CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP032920	Agrobacterium tumefaciens strain 15955 plasmid pTi15955, complete sequence	0 crisprs	NA	2
CP032917	Agrobacterium tumefaciens strain 15955 chromosome circular, complete sequence	0 crisprs	WYL,csa3,cas3,DEDDh	2
CP032918	Agrobacterium tumefaciens strain 15955 chromosome linear, complete sequence	0 crisprs	DEDDh,csa3,RT	0
CP032919	Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence	0 crisprs	csa3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6051 : 59347

Stx2-converting_phage(33.33%)

integrase,transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM20265.1\|6051_7134_-\|integrase	integrase	NA	NA	NA	NA
AYM20266.1\|7135_7537_-	plasmid stabilization protein	NA	NA	NA	NA
AYM20267.1\|7536_7791_-	prevent-host-death protein	NA	NA	NA	NA
AYM20268.1\|8025_8979_+	hypothetical protein	NA	NA	NA	NA
AYM20269.1\|8981_9662_+	transcriptional regulator	A0A1B1IVT7	uncultured_Mediterranean_phage	5.3e-19	30.4
AYM20270.1\|9751_11854_+	ATP-binding protein	NA	NA	NA	NA
AYM20271.1\|11978_13121_+	hypothetical protein	NA	NA	NA	NA
AYM20272.1\|13311_14106_+	hypothetical protein	NA	NA	NA	NA
AYM20273.1\|14195_14780_+\|protease	serine protease	NA	NA	NA	NA
AYM20274.1\|14956_16072_+	molecular chaperone Tir	NA	NA	NA	NA
AYM20275.1\|16080_17406_+	hypothetical protein	NA	NA	NA	NA
AYM20276.1\|17486_19466_-	hypothetical protein	NA	NA	NA	NA
AYM20277.1\|19465_19972_-	hypothetical protein	NA	NA	NA	NA
AYM20278.1\|19968_21135_-	hypothetical protein	NA	NA	NA	NA
AYM20279.1\|21349_22150_-	TIGR02391 family protein	A0A1S5SBU1	Streptococcus_phage	1.1e-28	34.2
AYM20280.1\|22146_24483_-	hypothetical protein	NA	NA	NA	NA
AYM20281.1\|24491_25130_-	hypothetical protein	NA	NA	NA	NA
AYM20282.1\|25345_26281_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
AYM20283.1\|26270_27125_-	hypothetical protein	NA	NA	NA	NA
AYM20284.1\|27847_28270_+	hypothetical protein	NA	NA	NA	NA
AYM20285.1\|28827_29172_+	hypothetical protein	NA	NA	NA	NA
AYM20286.1\|29161_31027_+	VirL protein	NA	NA	NA	NA
AYM20287.1\|31306_31747_+\|transposase	transposase	NA	NA	NA	NA
AYM20288.1\|31730_32084_+\|transposase	transposase	S5VXZ8	Leptospira_phage	4.8e-16	39.8
AYM20289.1\|32125_33232_+\|transposase	transposase IS66	S5VTD3	Leptospira_phage	1.4e-37	37.2
AYM20290.1\|33228_33735_+\|transposase	transposase	A0A218MNE7	uncultured_virus	6.9e-24	35.8
AYM20291.1\|33962_35231_+	P-450 monooxygenase	NA	NA	NA	NA
AYM20292.1\|35299_36475_+	P-450 monooxygenase	NA	NA	NA	NA
AYM20293.1\|36746_37184_+	virulence protein VirK	NA	NA	NA	NA
AYM20294.1\|37232_37940_-\|transposase	transposase	NA	NA	NA	NA
AYM20295.1\|38498_40988_+	two-component VirA-like sensor kinase	Q8QKV7	Ectocarpus_siliculosus_virus	8.1e-09	25.1
AYM20296.1\|41566_42334_+	virulence protein	NA	NA	NA	NA
AYM20297.1\|44036_44756_+	type IV secretion system lytic transglycosylase VirB1	NA	NA	NA	NA
AYM20298.1\|44770_45136_+	type IV secretion system protein VirB2	NA	NA	NA	NA
AYM20299.1\|45228_45462_+	type IV secretion system protein VirB3	NA	NA	NA	NA
AYM20300.1\|45461_47831_+	type IV secretion system protein VirB4	NA	NA	NA	NA
AYM20301.1\|47845_48508_+	type IV secretion system protein VirB5	NA	NA	NA	NA
AYM20302.1\|48604_49492_+	type IV secretion system protein VirB6	NA	NA	NA	NA
AYM20303.1\|49525_49693_+	type IV secretion system protein VirB7	NA	NA	NA	NA
AYM20304.1\|49679_50393_+	type IV secretion system protein VirB8	NA	NA	NA	NA
AYM20305.1\|50389_51271_+	type IV secretion system protein VirB9	NA	NA	NA	NA
AYM20306.1\|51666_52401_+	type IV secretion system protein VirB10	NA	NA	NA	NA
AYM20307.1\|52440_53472_+	type IV secretion system protein VirB11	NA	NA	NA	NA
AYM20308.1\|53603_54407_+	two-component response regulator VirG	NA	NA	NA	NA
AYM20309.1\|54465_54849_+	hypothetical protein	NA	NA	NA	NA
AYM20310.1\|54904_55228_-\|transposase	transposase	NA	NA	NA	NA
AYM20311.1\|55231_56887_-\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	4.2e-102	47.0
AYM20312.1\|56932_57280_-\|transposase	transposase	A0A0P0ZDM8	Stx2-converting_phage	3.2e-36	61.7
AYM20313.1\|57276_57684_-\|transposase	transposase	NA	NA	NA	NA
AYM20314.1\|57747_58728_-\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	2.9e-66	43.3
AYM20315.1\|58679_58958_-\|transposase	transposase	NA	NA	NA	NA
AYM20316.1\|58954_59347_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

81775 : 100960

Lactococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM20342.1\|81775_82612_-\|transposase	transposase	NA	NA	NA	NA
AYM20343.1\|83250_83964_-\|transposase	IS21 family transposase	A0A059NT77	Lactococcus_phage	1.6e-26	33.8
AYM20344.1\|83953_84838_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	4.6e-07	30.5
AYM20345.1\|84951_85077_+	hypothetical protein	NA	NA	NA	NA
AYM20346.1\|85103_85781_+\|transposase	transposase	NA	NA	NA	NA
AYM20347.1\|85981_86107_-	hypothetical protein	NA	NA	NA	NA
AYM20348.1\|86106_86802_-\|transposase	transposase	NA	NA	NA	NA
AYM20349.1\|87406_87502_-	hypothetical protein	NA	NA	NA	NA
AYM20350.1\|87699_88380_+	indole-3-lactate synthase	NA	NA	NA	NA
AYM20351.1\|90099_91503_-	indole acetimide hydrolase	NA	NA	NA	NA
AYM20352.1\|91914_94116_+	tryptophan 2-monooxygenase	NA	NA	NA	NA
AYM20353.1\|94957_95533_+	isopentenyl transferase	NA	NA	NA	NA
AYM20354.1\|96049_96610_+	6a protein	NA	NA	NA	NA
AYM20355.1\|97094_97718_-	6b protein	NA	NA	NA	NA
AYM20356.1\|98596_99673_-	D-vitopine dehydrogenase	NA	NA	NA	NA
AYM20357.1\|100606_100960_-\|transposase	transposase	A0A218MNE7	uncultured_virus	2.6e-22	46.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP032917

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

575771 : 585421

Arthrobacter_phage(20.0%)

head,tail,protease,terminase,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM15554.1\|575771_577031_+\|terminase	large terminase phage packaging protein	A0A0U4IJ26	Arthrobacter_phage	7.9e-69	40.6
AYM15555.1\|577161_577269_-	hypothetical protein	NA	NA	NA	NA
AYM15556.1\|577481_578120_+	chitinase	R9U4A9	Rhizobium_phage	1.6e-38	43.9
AYM15557.1\|578163_578487_+	stress responsive protein	NA	NA	NA	NA
AYM15558.1\|578673_579840_+\|head,portal	phage head portal protein	W8ECU7	Geobacillus_phage	1.3e-65	39.3
AYM15559.1\|580027_580348_+	hypothetical protein	NA	NA	NA	NA
AYM15560.1\|580389_580980_+\|head,protease	phage prohead protease	A0A0U2BX10	Paracoccus_phage	2.0e-27	43.4
AYM15561.1\|581017_582286_+\|capsid	phage phi-C31 major capsid gp36-like protein	Q3HQT0	Burkholderia_phage	4.2e-78	42.6
AYM15562.1\|582398_582968_+	hypothetical protein	NA	NA	NA	NA
AYM15563.1\|582971_583307_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AYM15564.1\|583303_583699_+	hypothetical protein	NA	NA	NA	NA
AYM15565.1\|583706_584906_-	MFS permease	NA	NA	NA	NA
AYM15566.1\|585013_585421_+\|tail	tail protein	NA	NA	NA	NA

DBSCAN-SWA_2

1290918 : 1299290

uncultured_Mediterranean_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM16245.1\|1290918_1292391_-	lipoprotein	I3PV24	Clostridium_phage	1.4e-11	30.6
AYM16246.1\|1292829_1293483_-	protein-L-isoaspartate O-methyltransferase	A0A1J0MC37	Streptomyces_phage	4.6e-12	36.0
AYM16247.1\|1293479_1294250_-	stationary-phase survival protein	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.2e-24	29.9
AYM16248.1\|1294406_1295690_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.7e-98	46.3
AYM16249.1\|1295794_1296598_-	sec-independent protein translocase protein TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	8.9e-42	41.2
AYM16250.1\|1296594_1297314_-	sec-independent protein translocase protein TatB	NA	NA	NA	NA
AYM16251.1\|1297368_1297575_-	sec-independent protein translocase protein TatA	A0A1B1IVR9	uncultured_Mediterranean_phage	2.1e-08	69.8
AYM16252.1\|1297705_1298485_-	segregation and condensation protein B	A0A1B1IVT7	uncultured_Mediterranean_phage	2.4e-39	47.1
AYM16253.1\|1298441_1299290_-	segregation and condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	2.3e-35	34.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP032920

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP032917

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection