CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033019	Janthinobacterium agaricidamnosum strain BHSEK chromosome, complete genome	4 crisprs	RT,DEDDh,DinG,cas3,csa3,WYL	0	1	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP033019_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033019_1

1630710-1630810

Orphan

Consensus_repeat	Method
TTGCGCGGGGCTCTCCGAATCGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033019_1

>merge|CP033019|1|1630710-1630810|CRISPRCasFinder
TTGCGCGGGGCTCTCCGAATCGTCCAATTGGTTTTCACGCGTGCGCCAAGGTGGCGTCTACAAAGGCGAGCCGCGCCTTGCGCCGGGCTCTCCGAATCGTC

>CP033019|1|1|1630710-1630810|CRISPRCasFinder
TTGCGCGGGGCTCTCCGAATCGTC	CAATTGGTTTTCACGCGTGCGCCAAGGTGGCGTCTACAAAGGCGAGCCGCGCC
TTGCGCCGGGCTCTCCGAATCGTC

Protein	Signature genes	Signature genes Name	Protein_function
CP033019.1\|AYM75667.1\|1623967_1624597_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|178807
CP033019.1\|AYM75678.1\|1635646_1636966_+\|D-amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|234819
CP033019.1\|AYM75671.1\|1628770_1628974_+\|hypothetical-protein	unknown	unknown	unknown
CP033019.1\|AYM75669.1\|1625991_1626732_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
CP033019.1\|AYM75670.1\|1626728_1627073_-\|DUF2917-domain-containing-protein	unknown	unknown	gnl\|CDD\|378568
CP033019.1\|AYM75672.1\|1629109_1630399_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
CP033019.1\|AYM75666.1\|1621575_1623936_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
CP033019.1\|AYM75677.1\|1634565_1635630_+\|putative-sulfate-exporter-family-transporter	unknown	unknown	gnl\|CDD\|225411
CP033019.1\|AYM75668.1\|1624669_1625989_+\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
CP033019.1\|AYM75665.1\|1620405_1621359_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
CP033019.1\|AYM75673.1\|1631198_1631789_-\|hypothetical-protein	unknown	unknown	unknown
CP033019.1\|AYM75674.1\|1631928_1632984_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235440
CP033019.1\|AYM75675.1\|1632988_1633426_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
CP033019.1\|AYM75681.1\|1641197_1642199_+\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236609
CP033019.1\|AYM75676.1\|1633489_1634359_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
CP033019.1\|AYM75679.1\|1637889_1638900_+\|porin	unknown	unknown	gnl\|CDD\|238208
CP033019.1\|AYM79448.1\|1636925_1637807_+\|thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
CP033019.1\|AYM79447.1\|1627199_1628621_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
CP033019.1\|AYM75664.1\|1619723_1620398_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|225396
CP033019.1\|AYM75680.1\|1639125_1640940_+\|sulfoacetaldehyde-acetyltransferase	unknown	unknown	gnl\|CDD\|236042

Protein	Function_ID	Function_description	E-value
CP033019.1\|AYM75667.1\|1623967_1624597_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|178807	PRK00031, lolA, outer membrane lipoprotein chaperone LolA.	2.39305e-73
CP033019.1\|AYM75678.1\|1635646_1636966_+\|D-amino-acid-dehydrogenase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
CP033019.1\|AYM75668.1\|1624669_1625989_+\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
CP033019.1\|AYM75670.1\|1626728_1627073_-\|DUF2917-domain-containing-protein	gnl\|CDD\|378568	pfam11142, DUF2917, Protein of unknown function (DUF2917). This bacterial family of proteins appears to be restricted to Proteobacteria.	7.48776e-09
CP033019.1\|AYM75672.1\|1629109_1630399_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
CP033019.1\|AYM75666.1\|1621575_1623936_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
CP033019.1\|AYM75677.1\|1634565_1635630_+\|putative-sulfate-exporter-family-transporter	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	1.17258e-77
CP033019.1\|AYM75669.1\|1625991_1626732_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	2.22058e-29
CP033019.1\|AYM75665.1\|1620405_1621359_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	8.02478e-162
CP033019.1\|AYM75674.1\|1631928_1632984_+\|histidinol-phosphate-transaminase	gnl\|CDD\|235440	PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional.	0
CP033019.1\|AYM75675.1\|1632988_1633426_+\|N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.20966e-08
CP033019.1\|AYM75681.1\|1641197_1642199_+\|phosphate-acetyltransferase	gnl\|CDD\|236609	PRK09653, eutD, phosphotransacetylase.	4.16261e-149
CP033019.1\|AYM75676.1\|1633489_1634359_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	2.3001e-116
CP033019.1\|AYM75679.1\|1637889_1638900_+\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	6.40293e-66
CP033019.1\|AYM79448.1\|1636925_1637807_+\|thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	3.3262e-156
CP033019.1\|AYM79447.1\|1627199_1628621_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	2.13906e-119
CP033019.1\|AYM75664.1\|1619723_1620398_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|225396	COG2840, COG2840, Uncharacterized protein conserved in bacteria [Function unknown].	5.11434e-42
CP033019.1\|AYM75680.1\|1639125_1640940_+\|sulfoacetaldehyde-acetyltransferase	gnl\|CDD\|236042	PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated.	0

>CP033019.1|AYM75672.1|1629109_1630399_+|serine--tRNA-ligase
MIDIQLLRKDIANVAERLATRKFQLDVAGFTALEAERKAIQTRTEELQGKRNALSKQIGMLKGKGEDTSAVMAQVAGLGDELKADEAALTVVQAKLSDFIMAVPNLPHESAPVGTDESGNVEVRKVGTPRTFDFEVKDHVDVGAPLGLDFEVATKLTGSRFSVMKGGIARLHRALAQFMLNTHVDEHGYTECYTPYMVNADSLRGTGQLPKFEADLFSVKKGGVEGEGETFYLIPTSEVSLTNIARDEILALDQLPLKMTAHTPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQVVHPDTSYQVLEEMVGHAETILQRLGLPYRVMSLCTGDMGFTASKTFDLEVWLPAQNTYREISSLSNTEAFQARRMQARFRNAAGKPELAHTLNGSGLAVGRTLVAVLENYQQADGSVEIPPVLRPYMGGLTHLKA
>CP033019.1|AYM75671.1|1628770_1628974_+|hypothetical-protein
MNALKNMEIAFIAAAVLAIGSSFATAGANTVEVSATSTLIAQAADSTMPVVTVSARRLTAAEKAAFI
>CP033019.1|AYM79447.1|1627199_1628621_+|PLP-dependent-aminotransferase-family-protein
MSAPLNLYEHLANELGALIDARVFAPGDRLPSIRHLAQQKRISVSTVMQALRLMEDRGQVDARPQSGYFVRHRAPRRPCSADAQHLKEPAFVGINNLLMRVLKENEAPAIVQLGTAWPPDEILPIKRMQRTISAVARREPALLSKVSCYDVSEGNFLRQVTRRALDWGKLDPHEIVVTNSCTEAISLCLRAVAKPGDTIAIESATYFVLLQMIESLGMKALEIPTDPKTGPSLDALELALRAGLVQACLFVPNANNPLGCVMPEANKKRLAGLLSEFNIPLVEDDVYGDLCFAPQRPWPVKAYDTSGNVLLCSSFSKAITPASRVGYVLAGRFAQEVALLKTVSSGATSHFFQAVLADFLEGSSYDQQLRKMRRTLVQRIARMSDAVAASFPVDCMLSEPQGGFVLWVQMPPQVDALALHGHAIADGVAYMPGQLFSASGKFGNYLRLNCGNAWTPRIEQAIGRLGRLVHEAL
>CP033019.1|AYM75670.1|1626728_1627073_-|DUF2917-domain-containing-protein
MVQAQRLSCSCQHNRSDAMQTDHELRSERPLRLEKARARVIECLSGTAWITAYAQFEDCVLRSGERYTIPNDGLVLVEAVGNGRIRVHGTAAPRPALLRWLNLALPHTLNIRNT
>CP033019.1|AYM75669.1|1625991_1626732_-|NAD(P)-dependent-oxidoreductase
MTQAPPLRVLVTGAAGSIGTAFWKRRHGEFSLRLADLHTGKLAEAPCPPMQLDVSDYAACLAACTDTDVVLHLAGVPHASADFDAQLLQPNIIGTHNIFRAAQAQGVKRVVFASSAQAVEGYPLDVQVHESMPARPANMYGASKAFGEGVASAFAHQHGMTAIAVRIANVAQFEKGQQHSARDIAAFISERDVVQLLARCIAADVPPGYHVVHGVSDNRYKRLSIAATRQLVGYAPQDDGFSLLGL
>CP033019.1|AYM75668.1|1624669_1625989_+|replication-associated-recombination-protein-A
MADLFSTAPRQPLAEALRPATLNEVIGQTHLLGVGKPLRLAFEAGKAHSMILWGPPGVGKTTLARLMANAFDSEFIALSAVFAGVKDIRAAMDQARHSLDQFGKHTLLFVDEIHRFNKSQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLNEDEMKQLLAKAQSTALTHLTFDEAAADTLIGYADGDARRFLNLLEQAETAASSTGTTTIDAAFVDNALTLNSRRFDKGGDNFYDQISALHKSVRGSNPDAALYWFCRMIDGGADPRYLSRRIVRMAWEDIGLADPRALTMVNDAAETYERLGSPEGELALGQAVIYLAIAAKSNAGYNAFNTAMAFVKKDKSKEVPVHLRNAPTKLMKELGYGHAYRYAHDEPDAYAAGETYFPDGMAEPGWYQPVPRGLESKIADKLAWLRELDRKAGKPAGKG
>CP033019.1|AYM75667.1|1623967_1624597_+|outer-membrane-lipoprotein-chaperone-LolA
MIIGAASVACSMLFAASASASALEQFKSFAAGTKSAKGEFVQRQVKKADASGKAKVSTPASGTFEFARPGKFIWTYLKPYEQLLQADGDKLYIYDKDLSQVTVKKLGDALGSSPAAILFGSNDLEKNFTLAEAGTRDGLEWLKATPKAKDTTFDEITIGLRNGVPEAMELRDSFGQTSVLAFKNFQKNPALSANHFKFVMPKGADVINN
>CP033019.1|AYM75666.1|1621575_1623936_+|DNA-translocase-FtsK
MTKPAQANQNSYTRKPVERRPLPNRLVRLLSEARWFALAAFALYFVLILASFNKLDPGWSHATNVDKVANLGGKLGATFSDLLLYIFGFSAWWWCVWLLRTVWNGYRRLSKRFLLEEEEVEREHHVEMLIRIVGFSIMLIGSMGLEYLRMAKSLHVQLPRDPGGVLGQLVGHASKEAFGFTGATLLLLLLFGLGFSLFFHVSWLQVAERIGGAIEDAFNWFVLRYQDREDRRQGEVAAVRRDEVVVIERAKHVEKHVAAPPVKIEPQVVTVVKSERVEKERQAHLFENLGDGKLPPLSLLDEAPPVVETVSVETLEFTSRLIEKKLSDFGVDAKVVAAYPGPVVTRYEIEPATGVKGSQIVGLARDLARSLSLTSIRVVETIPGKNYMALELPNSKRQIVRLTEILGSKVYNDGVSSLTIALGKDIAGKPVVADLAKMPHLLVAGTTGSGKSVGINATILSLLYKSDPLDVRLILIDPKMLEMSVYEGIPHLLAPVVTDMRQAGHALNWAVNEMERRYKLMSKMGVRNLAGYNAKIADAKKREEHIPNPFSLTPDSPEPLEKLPTIVIIIDELADLMMVVGKKVEELIARIAQKARAAGLHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQMGAETLLGMGDMLYMPPGTGLPMRVHGAFVSDEEVHRVVSHLKLQGEPNYIEGILEGGTLEGDGAEGGAPGEGGGEADALYDQAVAVVLKNRRASISLVQRHLRIGYNRAARLLEQMEQSGVVSTMQSNGNREILVPAASSEQG
>CP033019.1|AYM75665.1|1620405_1621359_-|thioredoxin-disulfide-reductase
MTTTKHARVLILGSGPAGYSAAVYAARANLNPMLVTGVEQGGQLMTTTDVENWPGDPMGVQGPDLMQRLLQHAERFNTEIVFDHIHTTFLNEKPIRLKGDSHEYTCDTLIIATGASAQYLGLPSEAEFMGKGVSACATCDGFFYRNQEVAVVGGGNTAVEEALYLSNIANKVTLIHRRDKFRAEAILIDRLNAKVAEGKIVLKYNHTLDEVTGNEGGVTGLNIKSTIDGKVEALSVHGVFIAIGHKPNTGIFEGQLEMHNGYIKTKTGLEGMATATSAPGVFAAGDVQDHIYRQAITSAGTGCMAALDAQRYLEGQE
>CP033019.1|AYM75664.1|1619723_1620398_-|DNA-mismatch-repair-protein-MutS
MASMKDFADLKAVSKQLKEQADARAQAAAERAQQVKVQAVESNLFKASIGGVKRLPESDRYMPSLPKAGAASVQQPARKLSPEEDDAAVLRESLSDLFEVDHYLENDPALNYARPGVGPDVVKKMRKGHWPIQDELDLHGLRRDEARDGIGAFLNQATRRKLRCVRVIHGKGFGSKGQEPVLKSMVHSWLVQKDEVIAFCQARRSEGGDGALVVLLSAALQPIR
>CP033019.1|AYM75673.1|1631198_1631789_-|hypothetical-protein
MHKLSDTRVRHDALTQQARQRKIEAWMRVATSLGEQIAVELQTATEQLQGEGMADLQRVTALAQRLANNSKAMRDTLGTLFDSGEKSEEHAVTSTEDCAMDEQVNTLGKDMAGVKLDVADLKVDVAGIKVDVAGLKTDVGVLKTDVGGLKLDLAVVRSNYATKSDVAEAKSAVILSCVGTIIAMSGVAFAVAKLVH
>CP033019.1|AYM75674.1|1631928_1632984_+|histidinol-phosphate-transaminase
MSRFWSNIVSELTPYVPGEQPKLPDLVKLNTNENPYGPSPQVLAALREAANDSLRLYPDPTASELKQTLAAYHGLDSAQVFVGNGSDEVLALAFMALLKHDAPLLFPDISYSFYPVYCKLYGIDYRTVALDDTMRIRPEDYQGPCGAIIFPNPNAPTGVDLPLAGVETLLREHPDAVVVVDEAYVDFGGESAVALVDRYPNLLVVQTFSKSRSLAGLRVGCAFGHADLIEALERVKNSFNSYPLDRLALAGAVASLQDEAYFQQTRQAVIASREQLAADLAALGFEVLPSVANFVFARHPQHDAAQLAAGLRAKSVIVRHFNAPRISQYLRISIGNPAECAALMAALRAVL
>CP033019.1|AYM75675.1|1632988_1633426_+|N-acetyltransferase
MLTFVPASSADGEALASLRVAAMRDSLERIGRYDPQRARQRFLSTYDPACTWQLRHGGALAGFYVLRPQADYLLLDHLYLAPECQRQGMGASVLARVFAEADAARKSVRVGALRGSEANRFYMRHGFVPDGEEEFDLYYRRAPAP
>CP033019.1|AYM75676.1|1633489_1634359_+|NAD(P)-dependent-oxidoreductase
MAKVAFIGLGVMGFPMAGHLAAGGHDVTVYNRNPARAAAWLEQYKGSSAATPAAAAAGAEFVFTCIGNDNDLYQVILEEGGLLSTMAPGSILIDHTTASAEAARTIHAAAKEQGVFFLDAPVSGGQAGAENGKLTVMVGGDAQAYARAEPVIALFSRAVTYMGASGSGQLTKMVNQICIAGLVQALSEGIAFAENAGLDAALVVDVISKGAAQSWQLENRGKTMIERKFDFGFAVDLMRKDLGICLAEAKRNGSDLPVTTLTDQFYGEVQQAGGNRYDTSSLITRLNKK
>CP033019.1|AYM75677.1|1634565_1635630_+|putative-sulfate-exporter-family-transporter
MKTNSSAITRVVDKNIPYLSSAIAIWRPRAVLRSWPGVAIALVIALSATFISSNYGGPQLLYALFFGLAFHFLASDPTCKPGIEFCSKVLLRTGVALLGARITFNQIASVGVTPLLIVVGGLIATLGFGYLLAKWLKRPITEGILSGGSVAICGASAALAISAVLPQTKENEKFTLLTVVGVTSLSTLAMIVYPLLVKLLGFDPTEAGVFIGGTIHDVAQVVGAGYLVSNHTGDVATFVKLTRVACLVPVVLGLSIMFKRKDGKSEVDAPPLVPFFLIGFVWLVITNSLGLIPQEVNGWINNASRACLVIAIAALGVKTSFQSLASLGWRPVIMLVMETVWIAAFVAIAVLLTR
>CP033019.1|AYM75678.1|1635646_1636966_+|D-amino-acid-dehydrogenase
MKVLVLGAGVVGTASAWYLRQAGHDVRVLERQAGAAQETSFGNGGQISVSHAEPWANPATLRKVVSWLGKDDAPLLFRPRLDPLQWQWALHYLRECLPSRVARNMRQIVALAEYSRQSLQALRRETGITYDHLERGILHFYTDEQEFDKSQAGAALLRELGCPRNTVSADEVIRLEPALRHARSRIVGGDFTASDESGDVHLFTTALAARAAAAGVDFQYCTTVTRLLEDGANGARITGVECIDAQGRHRLEYADAVVVAMGSFSAPLLQPLGIRLMLYPGKGYSATYPILDSAAAPSVSLTDDGHKLVFSRLGERLRVAGTCELNGYTRELNPVRCAAITRRVQALFPDACDYGDPVYWAGLRPLTPSNVPYIGATRYRQLFLNTGHGTLGWTMGCGAGRAIADLVSGRRPEVDFAFCGQRLAPQSAAEEFRGQTRRV
>CP033019.1|AYM79448.1|1636925_1637807_+|thiazole-synthase
MRQRSSGVRPAGSDPSFNLGDHDERRRHPRPPASGLTLAGTTYQSRLLVGTGKYKDFEETRLAIEESGAEIVTVTIRRVNIGQEKGEPNLLDFIPPSKYTILPNTGGCYNARDAVYTLQLARELLGGHQLCKLEVLGDEKTLFPNMPETLKAAEQLVRDGFQVMVYCSDDPIQARMLEDLGCIAVMPLASLIGSGMGILNPWNLSLIIEQAKVPVLVDAGVGTASDAAIAMELGCDGILMNTAIAAAREPIRMARAMKLAVQGGREAYLAGRMPRRAGAMSASPSSPMAGLIA
>CP033019.1|AYM75679.1|1637889_1638900_+|porin
MKHTLVAAAILASFFAGNASAQSSVTVYGLLDAGFTSEHGGADGSVTKLATGVQSGSRIGFKGTEDLGNNLKANFLLENGLDVDTGANRQGALFGRKAYVGLSGGFGAVNLGLQHNPLFTALDNIDPFETGLTGASINLMSVASLRTKNSIMYETPKVKGLSASIMYGLGEKPDSNTLGRTIDFSIDYANGPLVLTLAHDNRKDTPLNTAKVTLLGGTYDFGPAKLHAAYETDKDDAGTDFRNYMLGASAPVGAAGSVMASYIRKDDRTNARRGGRQLAIGYTYALSKRTNLYTSYGRISNDGAGTNFVGDASSGGSVPLPGHNSSAFTAGMRLKF
>CP033019.1|AYM75680.1|1639125_1640940_+|sulfoacetaldehyde-acetyltransferase
MTDLSDQKAAAAAIPVGPQKMTPSEAFVETLAANGVTDMFGIMGSAFMDPMDIFAPAGIRLIPVVHEQGAGHMADGYARVSGRHGVVIGQNGPGISNCVTAIAAAYWAHTPVVIITPETGTMSMGLGGFQEANQLPMFEEFTKYQGHVTNPARMAEFTGRCFDRAMSEMGPTQLNIPRDYFYGEIKAEIPKPNRLDRGAGGEQSLNDAAELLAKAKFPVIISGGGVVMGEAIEECKALAERLGAPVVNSYLHNDSFPASHPLWCGPLGYQGSKAAMKLIAKADVVVALGSRLGPFGTLPQHGMDYWPKNAKIIQIDADNKMLGLVKKISVGICGDAKAAAKAILSRLDGKSLDCDATRDARYVTVQAEKAAWEEELTNWTHEKDAYSLDMIEEQKKEPGNYLHPRQVLRELEKAMPEDVMVSTDIGNINSVANSYLRFEKPRSFFAAMSFGNCGYAFPTIIGAKVAAPHRPAVSYAGDGAWGMSLMETMTCVRHNIPVTAVVFHNRQWGAEKKNQVDFYNRRFVAGELDNQSFAEIARAMGAEGITVDKLEDVGPALKKAIDMQMNEGKTTIIEIMCTRELGDPFRRDALSKPIRHLDKYKDYV
>CP033019.1|AYM75681.1|1641197_1642199_+|phosphate-acetyltransferase
MKALHRIIEQARAVPKNIVLCEGGDARVLQAAARAAAEGLAHITLVGQPAAILALAHEHGLDLDSVRLVDPATSDESEHYAQQLFVLRQAKGMTVEQARIAVQDPLCYANLMVRLGDADGCVAGAVHTTADVVRSAIQIIGVDPAFKLVSSFFLMMLCEPFHSLKGGFIFSDCALVVDPKAEELADIAMAAADSAQALLMEEPRVAMLSFSTSGSAHHAAVDKVHAATDRVKAQRPLLAIDGDVQLDAAIVAEISQRKVKDSVVNGRANVLVFPNLDAGNIGYKLAERMGGAVAIGPLLQGLNKPANDLSRGCSADDVYNVIAVTAVQAQGGR

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Crispr_ID: CP033019_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033019_2

3784916-3785059

Orphan

Consensus_repeat	Method
GGCGTAGGTCGGCTTAGCCCAACGGGCGTAAGCCGACAACATTGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033019_2

>merge|CP033019|2|3784916-3785059|CRISPRCasFinder
GGCGTAGGTCGGCTTAGCCCAACGGGCGTAAGCCGACAACATTGTTGGCCCGCCCGCGATGATGTTGGATTACGCGTCCCGCTAATCCAACCTACGGGGCGTAGGTCGGCTTAGCCCAACGGGCGTAAGCCGACAACATAGTTG

>CP033019|2|2|3784916-3785059|CRISPRCasFinder
GGCGTAGGTCGGCTTAGCCCAACGGGCGTAAGCCGACAACATTGTTG	GCCCGCCCGCGATGATGTTGGATTACGCGTCCCGCTAATCCAACCTACGG
GGCGTAGGTCGGCTTAGCCCAACGGGCGTAAGCCGACAACATAGTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP033019.1\|AYM77319.1\|3792743_3795566_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|274362
CP033019.1\|AYM77312.1\|3780775_3782491_+\|phosphotransferase	unknown	unknown	unknown
CP033019.1\|AYM77318.1\|3791879_3792509_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
CP033019.1\|AYM77314.1\|3785079_3785703_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
CP033019.1\|AYM79651.1\|3791341_3791917_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|214870
CP033019.1\|AYM77315.1\|3785955_3788661_+\|M1-family-peptidase	unknown	unknown	gnl\|CDD\|341064
CP033019.1\|AYM77306.1\|3771683_3772214_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|223603
CP033019.1\|AYM77321.1\|3796464_3799548_-\|acetoacetate-decarboxylase	unknown	unknown	gnl\|CDD\|225885
CP033019.1\|AYM77304.1\|3768762_3769680_+\|pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|107209
CP033019.1\|AYM77311.1\|3779133_3780441_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|177665
CP033019.1\|AYM77316.1\|3789164_3790043_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237907
CP033019.1\|AYM77322.1\|3799803_3800352_+\|phosphohydrolase	unknown	unknown	gnl\|CDD\|224808
CP033019.1\|AYM77317.1\|3790154_3791051_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP033019.1\|AYM77305.1\|3769683_3771666_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
CP033019.1\|AYM77307.1\|3772277_3774947_-\|nitrate-reductase	unknown	unknown	gnl\|CDD\|239155
CP033019.1\|AYM77310.1\|3776558_3779123_-\|nitrite-reductase-large-subunit	unknown	unknown	gnl\|CDD\|184951
CP033019.1\|AYM77309.1\|3776192_3776546_-\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|379380
CP033019.1\|AYM77320.1\|3795550_3796462_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
CP033019.1\|AYM77308.1\|3774969_3776196_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224171
CP033019.1\|AYM77313.1\|3782705_3784811_+\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224422

Protein	Function_ID	Function_description	E-value
CP033019.1\|AYM77319.1\|3792743_3795566_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	3.26493e-94
CP033019.1\|AYM77318.1\|3791879_3792509_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.28621e-44
CP033019.1\|AYM77314.1\|3785079_3785703_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	1.1776e-38
CP033019.1\|AYM79651.1\|3791341_3791917_+\|YceI-family-protein	gnl\|CDD\|214870	smart00867, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to polyisoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	2.00545e-11
CP033019.1\|AYM77315.1\|3785955_3788661_+\|M1-family-peptidase	gnl\|CDD\|341064	cd09601, M1_APN-Q_like, Peptidase M1 aminopeptidase N catalytic domain family which includes aminopeptidase N (APN), aminopeptidase Q (APQ), tricorn interacting factor F3, and endoplasmic reticulum aminopeptidase 1 (ERAP1). This M1 peptidase family includes eukaryotic and bacterial members: the catalytic domains of aminopeptidase N (APN), aminopeptidase Q (APQ, laeverin), endoplasmic reticulum aminopeptidase 1 (ERAP1) as well as tricorn interacting factor F3. Aminopeptidase N (APN; CD13; alanyl aminopeptidase; EC 3.4.11.2), a type II integral membrane protease, preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is considered a marker of differentiation since it is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. ERAP1, also known as endoplasmic reticulum aminopeptidase associated with antigen processing (ERAAP), adipocyte derived leucine aminopeptidase (A-LAP), or aminopeptidase regulating tumor necrosis factor receptor I (THFRI) shedding (ARTS-1), associates with the closely related ER aminopeptidase ERAP2, for the final trimming of peptides within the ER for presentation by MHC class I molecules. ERAP1 is associated with ankylosing spondylitis (AS), an inflammatory arthritis that predominantly affects the spine. ERAP1 also aids in the shedding of membrane-bound cytokine receptors. The tricorn interacting factor F3, together with factors F1 and F2, degrades the tricorn protease products, producing free amino acids, thus completing the proteasomal degradation pathway. F3 is homologous to F2, but not F1, and shows a strong preference for glutamate in the P1' position. APQ, also known as laeverin, is specifically expressed in human embryo-derived extravillous trophoblasts (EVTs) that invade the uterus during early placentation. It cleaves the N-terminal amino acid of various peptides such as angiotensin III, endokinin C, and kisspeptin-10, all expressed in the placenta in large quantities. APN is a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs are also putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established.	0
CP033019.1\|AYM77306.1\|3771683_3772214_-\|adenylyl-sulfate-kinase	gnl\|CDD\|223603	COG0529, CysC, Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism].	3.07132e-92
CP033019.1\|AYM77321.1\|3796464_3799548_-\|acetoacetate-decarboxylase	gnl\|CDD\|225885	COG3349, COG3349, Uncharacterized conserved protein [Function unknown].	5.13634e-17
CP033019.1\|AYM77304.1\|3768762_3769680_+\|pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|107209	cd06448, L-Ser-dehyd, Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.	3.45874e-129
CP033019.1\|AYM77311.1\|3779133_3780441_-\|MFS-transporter	gnl\|CDD\|177665	PLN00028, PLN00028, nitrate transmembrane transporter; Provisional.	3.72885e-133
CP033019.1\|AYM77316.1\|3789164_3790043_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|237907	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional.	6.12706e-48
CP033019.1\|AYM77322.1\|3799803_3800352_+\|phosphohydrolase	gnl\|CDD\|224808	COG1896, COG1896, Predicted hydrolases of HD superfamily [General function prediction only].	3.01351e-07
CP033019.1\|AYM77317.1\|3790154_3791051_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.93786e-22
CP033019.1\|AYM77305.1\|3769683_3771666_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.68127e-59
CP033019.1\|AYM77307.1\|3772277_3774947_-\|nitrate-reductase	gnl\|CDD\|239155	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
CP033019.1\|AYM77310.1\|3776558_3779123_-\|nitrite-reductase-large-subunit	gnl\|CDD\|184951	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.	0
CP033019.1\|AYM77309.1\|3776192_3776546_-\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|379380	pfam13806, Rieske_2, Rieske-like [2Fe-2S] domain.	4.77113e-52
CP033019.1\|AYM77320.1\|3795550_3796462_-\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	6.65874e-23
CP033019.1\|AYM77308.1\|3774969_3776196_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	0
CP033019.1\|AYM77313.1\|3782705_3784811_+\|S9-family-peptidase	gnl\|CDD\|224422	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism].	0

>CP033019.1|AYM77313.1|3782705_3784811_+|S9-family-peptidase
MSSYRTLAGSMLLGLAAAGLAHAQAPAPAAANTDPHLWLEEVLGDKPLAWVKQHNAVTTKELEAQPGFAALQTRLKTILNSKERIPYVSKEGAFYYNFWRDAQHVRGIWRRTTLAQYQLAEPAWETVIDLDQLAAGENENWVWGGASCLYPKGERCLISLSRGGGDAKVVREYDVVKRAFVDGGFTLPEAKGSVSWIDQDTLFVSTDFGPGSMTSSGYPRIIKQWQRGTPLALAHTLYEAKPDDLSAGAYKDFTPGHEHQFIERQIDFYSGEMFLREGADLKKVPKPDDATAFTVRDQLIITLRSDWKVNGKTYVQGSLLASDFKAFMQGKQELELLYAPTATSSLDNVTATKSAILVTTLDKVKNRLTELRHVNGKWQRRAVDAPKLGTLAVSALDPVDSDQYFLTVTDFLNPTTLYLATAQSDQRTKIKSLPAYYDAAPYKVEQFESTSKDGTKVPYFAIMSKKTKFDGSNPTVLYGYGGFEVSLKPSYSGTTGVAWLEKGGVYVLANIRGGGEFGPRWHQAALKENRQRAYDDFISVAQDLIKRKVTSPRHLGIMGGSNGGLLTGAVLVQRPDLFNAVVSQVPLLDMRRYNKMLAGASWMGEYGDPDVAEQWAYISKYSPYQNVFKDKKYPRVLFTTSTRDDRVHPGHARKMVAKMEEQGHDVLYWENTEGGHAGAANNDQQALMWALTYTFLHEQLK
>CP033019.1|AYM77312.1|3780775_3782491_+|phosphotransferase
MFGQLRQWQPRRGLARALACVCVGALLIAWSNTAAAQDGSPEPREHSELDATVFAPFHAARGERVTQARTFVVHLTYPDEGRAHAVRWTLTLSGPGPQGAVLRRWSGTEQVGAGGKRVNLPWDGRADADARERRMLAPDGLYELRLLAVVDAGTPHEAQVEQQWQIAVQRGASTAPRVPAFQAGLQQLSRLDEEPGYRIVYANLHSQTRHSDGGAALDACHGAQEPQTAPFGPIDAYKYAQDHGLDALLTSEHNHMYDGSDGTNPAATPAEAKALYQTGLAEAAAYTNAHPGFLALYGMEWGVINKGGHLNIFNSEQLLGWERNARGELLADLETPKSDYAALYALMRERGWIGQFNHPAYAGQFLVDSQPLGYTPDGDAAMVLCEVMNTSAFSTNDQETETRRSNYEAACNRALAAGYHVAFSSNQDNHCANWGASYGNRTAVLVASPAAGMPVSRDSFLDALRARRVFATMDKHAQLLFTANGKLMGERFDNHGPLQLSTHFSNSAGRQAAAVAIFHGVPGGNGSVTQLSDQAELTVTPAPGPHVYYARLTQDDGNIVWSAPVWVNQLP
>CP033019.1|AYM77311.1|3779133_3780441_-|MFS-transporter
MASQKATRIALFSLATPPMRAFHLTWMAFFVCFFAWFACAPLMPVIKGEFGLSLAQVANINIAAVAITILVRLIVGPLCDRYGPRKTYTGLLLLGAIPVLGVAASQSYESFLFFRLGIGAVGASFVITQYHTSVMFAPRVVGTANAAAAGWGNAGGGAAQALMPLLLGAVLMLGVSESLGWRVALLVPGVLMLVMAVLYWRYTQDCPEGNYSDLRAAGTAIEGGKGGGKSGGWDSFKAASSNYRVWLLFVTYGACFGIEIFIHNIAAVYYVDHFGLSLKSAGLAAGSFGLLALFARALGGWMSDKLALRGNLNSRVTLLFMLMIGEGVGLLWFAKVDSITWAVIAMLVFGLFTHMACGATYALVPFIDSKALGGVAGIIGAGGNVGAVAAGFLMKGTGDIRQTLIILSALVVISALCAIAARFTGLAAEPNMAAA
>CP033019.1|AYM77310.1|3776558_3779123_-|nitrite-reductase-large-subunit
MNHPLNIVVLGHGMVGHKFLERLALDNAPHLSVTVLCEEPRPAYDRVHLSEFFSGKSAEDLSLVAPGFFDKGNVVLKLNARAVSIDRAAKTVTASTGEVLSYDKLVFATGSTPFVPPLPGKERDGCFVYRTIEDLEAMLAWGAKSKTGVVIGGGLLGLECAKALRDLKLDTHVVEFAPRLMAVQVDEGGARVLRRKIEELGVTVHTQKNTLAIVEGESATHRMQFADGSHLEADMIVFSAGIRPRDELARACGLDVGPRGGIAIDDSCLTSDPDIYAIGECALWGGLVFGLVAPGYEMARIAARHLLQEEEGEAGEASFKGADMSTKLKLMGVDVASLGDPHGNAPGSRSYQFMDERKQIYKKIVVSDCGKYLLGGVMVGDASEYGTLLQMMLNKIELPASPEFLILPQADGQQKAGLGVDALPEAAQICSCNDVSKGALCAAVADGATSIGALKSCTKAGTACGGCVPLVTQIMKAEMQKQGLAVNNHVCEHFAYSRQELHHLVRVGKIRSFGALLSAHGQGLGCDVCKPVAANILASCWNDFVLSPVHASLQDSNDYFLGNIQKDGTYSVVPRMPGGEVTADGLIAVGMVAKKYGLYTKITGGQRVDLFGARVDQLPAIWEELIAAGFESGHAYGKSLRTVKSCVGSTWCRYGVADSVGFAIQLENRYKGLRTPHKIKFGVSGCTRECAEAQGKDIGLIATEKGWNLYVCGNGGMKPRHAELLASDLDEATLVRYVDRFLMFYVRTADRLQRTSVWRDNLEGGLDYLKAVVVADRLGIAHELEADMQHVVDTYACEWKEAVSNPAVRQRFRHFVNSGKNDENVVFVEERGQIRPATPLERRNTVIPILAVEA
>CP033019.1|AYM77309.1|3776192_3776546_-|nitrite-reductase-small-subunit-NirD
MNELNSASADNWVAICPLTDIVPDTGVCALLGGRHVAVFRVGDAAPRVYAIDNVDPNAGASVLSRGLVGSIGERVVVASPIYKQHFDLASGECIEAPEHSVAAWPARVFGGMVWVAL
>CP033019.1|AYM77308.1|3774969_3776196_-|NAD(P)/FAD-dependent-oxidoreductase
MNTAARPSLVVVGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRILLSPVLAGEKTVDDIMLHTRDWYAHNGITLHAGDPVVHIDRQARTVQALSGIEVRYDRLLLATGSTPFIVPVPGHELPGVIGFRDIDDVDTMLRAARQHRHAVVIGGGLLGLEAANGLQRQGMDVTVVHMSGALMNQQLDAPASMLLKSALEARGLRFLMQAQTAEILGTGRVQGVRFADGTSIPADLVVMTAGVRPNIALAQAAGLHCERAIVVDDCLQSYDPRVYAVGECVQHRRATFGLVAPIWEQARVCGAHLAGAGHRRYVQQASATKLKVTGIDLYSAGDIIGGEGSEDLVLRDPRRGVYKRLVVQGSRLAGAVLYGDVQDGPWYFDLIQQRRDISKLRAHLLFGQALCAQAA
>CP033019.1|AYM77307.1|3772277_3774947_-|nitrate-reductase
MTSCTPVKTTCPYCGVGCGVEATRLPDGAIRIAGDTTHPANLGRLCVKGSALGDTLDLEQRLLYPQVRADGVLRRASWDAALDQVAGGLRAIIDEHGPDAVALYVSGQLLTEDYYIANKFMKGYVGSANIDTNSRLCMSSAVAGHKRAFGEDIVPGCYEDLELADMVVLVGSNTAWCHPILFQRIARIRETRPEMKLVVIDPRRTATCELADLHLPVKPGTDVWLFNGLLCYLAKEGVIADAFVTRHSRGLDAALAAAHADCGDPLQVARICKVDPQALLAFYQAFAATRKVVTAFSQGVNQSSSGTDKVNSIINCHLATGRIGQPGMGPFSLTGQPNAMGGREVGGLANMLAAHLELDNPLHRDTVQTFWDSPRIAAKPGLKAVDLFHAIEAGKVKAVWIIATNPLVSMPDADQVRRALARCELVVVSDISAQSDTNVHADVLLPALGWGEKDGTVTNSERRISRQRAFLPAPGEARADWDVLCDVARRMGYDGFDFAAPQAIFAEHARLSTFRNGAEMARLFNLAGLDNLDAAQYDALAPQQWPQGRARLFGDGRFAHADGRARFVPTAPRAPHNMPGEDYPLILNTGRVRDQWHTMTRTGKAAKLSGHVVEAFIDLHPQDALLYGVREGELARISSAWGAMVARVVHGGGIARGQVFVPIHWSDANASDARVGAVVNPVVDPVSGEPEFKHTPVRIEQFRVHWHAFVLSRTPLTLDGVAHWTRIQGEQFLRYELAGRQRIEDLGAWARALLGVTDDNADWLDYADASAGVYRAVHLDEGRIAQCVYVSPRPDLPSRSWLASLFAHAQMDALDRAGVLLGQPIGKGVDAGPIVCSCFGVGRNTICAAIAGQKLETTAQVTACVKAGGNCGSCVPEIRQLLLEARSAA
>CP033019.1|AYM77306.1|3771683_3772214_-|adenylyl-sulfate-kinase
MTAGQYDTVWLTGLSGAGKSSIADALARQLKAQGCAVAVLDGDQLRHGLNRDLGFTPQDRHENIRRVAEVARLMNGAGLTVIAAFISPYRADRAMAAAIIGAAHFIEVHVSTPLAVCEARDPKGLYEKARAGQLVQFTGVSAPYEAPLAAALTLDTGTLALDESVERICRYLRQRP
>CP033019.1|AYM77305.1|3769683_3771666_-|diguanylate-cyclase
MRRRLPASLKARMSVVVFLLVLAAVASLALATLSVAERGMRDVTGRQQYVSLSSAAVFIDEELDAKRNVLRAIADSLPAGGAHDGASLQRYLAAQTVLRKEFYSAGVVGIDGAVLASVSPFKPQAGLNVKGRPYFEQTLATRRSVISAPLNGSISGMPIVVVTQPVFDAQGAVRYVLAASVNLRQPDFLGRLGALKPGTGGYLYIMTGEGIIVEHPDKSRIMQHIEAHGPISMSARRALQGFEGWLTGTTTQGVDALFAYHRIASTGWILASVYPMRDAFAPLHAIRSKILLAAVLLAALAGLAGWRVVLRLLLPLARLRHHVHEIRRQRLGIEALQIERRDEIGDLSRDFYSLMAEREIAVAQTRDSERRLKLLTDHVPVVIVYIDREHRYQFINATFEKWFGRSQQESMMQSIREVLGEEAYQLREQYLRRAFSGEEVEYEFTIGGDGDAGQRAFQTSYVPDVGESGAVEGVYGLIHEITKTRAVHTALQFAAATDILTGIANRRRFDEQLELSMQRTRAARAPMALAYLDIDRFKAINDSLGHKAGDEVLKEFAARLVRSVRASDLVARLAGDEFVIILEGVNGAAEVRQVGAKIVEAIRQPFALAGGPLPVTTSVGMAIFREGALTPAQLLDLADQALYAAKGQGRDGVALREAAP
>CP033019.1|AYM77304.1|3768762_3769680_+|pyridoxal-phosphate-dependent-enzyme
MALHIETPLLNSRALSLLSERAIWLKLEALQPPGSFKIRGIGLACEEYARRGASRFISSSGGNAGIAVAYAGRQLGIPVIVVVPETTSERAKALIAQEGAEVIVHGAAWQEANALAQSMLTPQDAFLHPFDDPLLWQGHAGMIDEVARAGLRPDAVVLSVGGGGLLAGVAEGLQRNGWDDVAIVAVETQGAASLAAAVSAREHVALPAVSSIATSLAARQVCAQAYAISQTRLLHSVVVSDRAAVDACQRFVADQRLVVEPACGAALAAVYGKAPELAPYRNVLVIVCGGVTATTQQLDHWSAIL
>CP033019.1|AYM77314.1|3785079_3785703_-|glutathione-S-transferase-family-protein
MKLTISPRTPNPRRVTMFIAEKGITGIEEVALDLMAGQHRDPAFLAKNPLGRVPVLELDDGRVLTETRAICTYLEGLQPQPNLMGEGFEERAFIEMADRRVELHLFSAAANWVRHGHPALVALENPQFPDFATAQAGKLRETAQWLDQVLAHQPYIAGERFTIADITAFCALEFVRGLMKYRPGAEGLSNLQAYRDRIAERPSAQAK
>CP033019.1|AYM77315.1|3785955_3788661_+|M1-family-peptidase
MHRTPTPRFRRSQLAAAVLALASITAAHADNAAPAARYVSASHAPGTTTQLPRGVTPLHYIVSITPDAAASTFKGEVAIRVAVDAPTASITFNALNLTFAAAAIEGAGGSKQVTRKIAFDADKQTATVHFAEPVAKGEYLLRIDYSGKIGTQATGLFSLDYDTPQGRQRALYTQFENSDARSMLPSWDEPDYKATFDLNVVVPSNQMAVGNMPIASSEELGNGMKHVYFATTPRMSTYLLFFGLGDFERATTMADGTEIGVITKKGALAQSRFALDESSALLREYNDYFGVRYPLPKLDNIAAPGRSQFFGAMENWGAVFTFEYGLLLDPAISTQADKENIYTTLSHEMAHQWFGDLVTMRWWDDLWLNEGFASWMESRTTERLHPEWNTALSSVGGRESAMSQDALRTTHPVVQRIATVEQASQAFDGITYQKGEAVIRMLEAYVGADTWRTAVRSYMRKHAYGNTVSDDLWREVDAAAGKPVSAIAHDFTLQPGVPMITVDNAVCRNGNTRVRLTQTEFSKDQPNKKPLSWKVPVIASTVGNGKLATVLVRNGKATLNVPGCGALLVNAGQSGYYRTVYAPANTRALARSFARLAPIDQLGLLADSQSLGLAGAQNLADFLELVKATPLSADPQVLGKVAASLGSLYEQYAGDSAESKARQQAFGRFAMARLAPMMAQTGWEARAGEASSVATLRGQLIAILGDMGEPGVIAEARRRHAASEQDPAAMPAPLRRTILGVVAQHADAATWEQLHARAQEEKTPLVKNQLYDLLASSNDPALARRALALALTDEPGVTNSPAMISRVSRTHPELAFDFALAHLEQVNARIDASSRSRYFPRLAAGSAQLDMIAKLEAYAQANLPAGARGDADSSVAGIKYRIKLRAERLPAVDAWLAKQAG
>CP033019.1|AYM77316.1|3789164_3790043_-|LysR-family-transcriptional-regulator
MHALPAMTLDIVLLRSLLEVVDTGGFALAAQNLALTPSAVSGHIKRLEHSAGKQLLARTTRSLELTAAGELLYMYARNIVDLEREARARLSGASVQGRLVLGASEDFAGTWLPQVLQTFQRWHPQASIELKVGITADLLRRQAHEQIDVIFGKQCSRTEGAGELLWAEPLVWAYAAGRLPDPQLPVPLALFPSPCVYREAALAALAQAGRAWRLAFDSGSMAGCVAAALAGFAVTPVARSQLRDGLRILGAEEGLPPLPDARFYAFPRNNTPAVLALVDAVRGAGQRHQFRA
>CP033019.1|AYM77317.1|3790154_3791051_+|alpha/beta-hydrolase
MQDYHYIATPLLDVAYLEWNAAGSRCAVLVHGWPDSPESWAKTATALAAAGYRVLAPALRGFAPTRFRHADTPRSGQLAALGRDLLDFIDAMQLDRPLLVGHDWGARAVANACGLRHDAASGLVMLSVGYGTNDPRQELSYQQARNYWYHWFMATPRGQHAVEHDRHAFARMMWDSWSPAGWYGEADFAQASRAFDGPDWAEVVLHSYRHRWAFAEGDPAYAADEARLHPAPVLPVPTLVLHGAADTCNHPDSSAGRERHFSGAYQRVLLEGIGHFPQREAPQVVASAILLFVDGQAR
>CP033019.1|AYM79651.1|3791341_3791917_+|YceI-family-protein
MHIAPDESLLTITVRRGGALARLGHDHVVASRSLQGIVVPAPGRAQLRFRLDEMTVDEESLRREAGLTTTPSADAIAGTRHNMLVRVLEAERYPWVSIEARRTGDQQVFDADITLHGVTRTVQLPVRIEQAADGRSLQASGSLLLKQSDFGIVPFAILGGAMAVQDQMELAFRITARQEVSAPGSGASPGR
>CP033019.1|AYM77318.1|3791879_3792509_-|LysE-family-translocator
MLSPDQFLAFLAAAVLITASPGPDNLMVLGVGMSRGRRQGMAFGLGCALGCLTHTVLATIGVSALLAASPTAFTALKVAGGLYLVWLGIGALRSRGGARVDGAAALPDESLLRLFGKGLFANSINPKVVLFFLSFLPQFIVAGQGNASWQTAQLGLVFTAQACVLFGLLGYFSGAVGLWLNRRPRAGLWLDRVAGTIFIGLGLRLILAR
>CP033019.1|AYM77319.1|3792743_3795566_+|hybrid-sensor-histidine-kinase/response-regulator
MLSLLFGLLGLAGAAQATPLPLSKQGLAHLGKGGQLFLAENEAAPADVAALPAWLARQRPADQVDLFGGAYWLHAQVRNDSSEAAWVIDPNDTLIDLVDVYVYGPGPHAAPRTLLTGYQRPHDYLLHYGMNVQLAPGATYDILIRFSSPYYARAPLFGVKTQHDYRKLVGKENFLMVASIGALLALGLFNFFIFSITLEKASAYYALYVLTYGLAWAMTFHVFADLFDWHQLQLHYVPFFLLPVFSTLFYMHFLRLRDYSLLLYRLSKVNLALPLLLLPSCFFALSYAHTLATIAISIWMLLALICGIVVWRRGYQPARFFVLAFVALMLPGFLILPANLGLMPAMVANAQLVTLLGGTFDGLLLAFALADQIRLLRNNLEQRVQERTLALTLSNDALLKAKEHAEVVSRHRIDFLSAMSHDIRTPLAGVIGMLKFALRDQSVKGRTQEYLRIGLHNGVSLLTILNDILDFSKIDAGKLTLETVDFDLLALIGDAAGIVQGQADAKSLLLRRELALDLPRYVRADPTRLRQILINLLGNALKFTANGEVLLEVRRARTPPRGDGRSDIEFIISDTGPGIDADTLPRLFQKFEQADHSTTRRYGGTGLGLAICKELVELMQGTIGVESRVGIGSRFHFTLPLTPGSAPAADARRPARQARHACRLRILCAEDVRTNQIIIGTLLESMGHDVTIVENGEQALRALGSGPYDCVLMDGRMPEMDGEQAARLIRDGGNAQFPIPDAHIPILALTANASEHDRQRYLAAGMDDFLSKPVDEALLFEKIDAIIDLLLARGHALPQAAPIDDDTLARQFGLADAEDAQAQTPAPPDPMTAPVHILPLAGLSAQHLQRIAQAFLTEAPRRLDLACHAVRDGNASAAAAAFHALKGSAGYLSRPTLHGLCHQMETLASNGQLDNVEQFLPQLQTALDVARRDLENQPGA
>CP033019.1|AYM77320.1|3795550_3796462_-|alpha/beta-hydrolase
MRGLMLLCLVLIHLHVGAAPPGAIVLWPGAPPGGAAPGPQRDSAKGSITQVEQPYLIAHRPARPDGTAILLVSGGGYAHIEAGKESGPAAAWLQAQGVTAFELVYRLPQEGGGASAPFQDGQRAMRVIRARAAEWGIDPARIGMLGFSAGAHLAGMTAVQPDAALYAPVDAIDGVSARPDFVVLLYPVLTMQPPFDTTHAKKELLGSHPTQAARDALSVEWQVDARTPPAFIAQALDDPISPPENSTLMAAALRRAGVPVELHQFRRGGHGWGLGKPGSEPAAWPQLLLAWLQSHGWMPQAPG
>CP033019.1|AYM77321.1|3796464_3799548_-|acetoacetate-decarboxylase
MMHSPLQLKQSEMYGYFVRGDLAKLQATVNTTLNQVAGSKMTLKALSPYVMLTFTRVNHADSANSVDQAKGWITEVDIVTWIMVGQMDEHGKLAHIYWYPCHIFVDDAMALINGRELFGYPKYLCDYEIPAAGSEPLRCSVAAKGFQHFSPETKLALHPLLEVNATVQTGPHKPVNSFLELIEQAFQIFLSIPDFFDMDQAGWADILSLLRNPRIDQIFLKQFPDSAGVKAVYQALVAAPAEINRLHSARLLGYEYECTMHAFDSFPLDQTLGLQLGPQAAILPFNVNFDFTAMPGEELVDNSRIAPEKIAILGGGVAAMTTAYYLTNQPGWQNRHAITVYQLGWRLGGKGASGRNAQAGQRIEEHGLHIWFGFYANAFRMIKEAYASLERPPGAPLATWRDAFKQHDYVALSEDVKGQWRNWSIVFPTLPGEPGEGGEDVTLWQMAIAMVGWIEQWIRQIRQVADADARIVRASASQGEGVWPGWLRRLADEVVGQADELGLDVGLSVGALVALVTDLAPDSTRHDQARHQLLASTLNGIRAWLRLRYRALIDGDDELRRLFTCLDLGITVMKGMFEDGVFKNGFDVINDIDFRAWLRKHGGDEQFSVNSAPVRGFYDLVFAYEGGDFAKPNIEAGTLLRSMARIGLAYKGGIMFKMQAGMGDTIFTPLYEVLRKRGVEFKFFQRVEELVPGAGDIDSIRITQQVQLKDPAAGYAPLVDVKGLACWPSAPDYAQIEPAQAALLQEQEVNLESYWSDWPQQYRQAFGRALPATVLKKGVDFDKVVFGISIGSLQALCPQLLAQSPALQLAADKVKTVATQAYQVWLNKDLSQMGWTTQPKGQQPVLSAFTEPYDTWAPMDQLLAHEDWPAGLEPKNVSYFCSAFPVDSYPPVTDTAFPARCADRAKQGAQHQLEREIGALWPEAGAPGAFPWQWLVDAKAGTGPARFDSQYWRANVDPSERYVMSVVGSTQYRLATDQSGFSNLFLTGDWIRTGLNAGCVEAAVMAGMQTSRAMTGYPAVIQGETDF
>CP033019.1|AYM77322.1|3799803_3800352_+|phosphohydrolase
MAMITTDYVSTYSGNRFYPLRPHIDKVAIEDIAHGLAYQCRFNGQTQVFYSVAQHSLIVAELVPPHLRLAALLHDAAEAYLGDMVKPLKVLLPEFAMLEDKVSAIIAATYGLDFSDYAPIKRADLIALATEKRDLMPHSAERWAYLDGIAPLPGIIEAMGPAEAKQRFLHAFAQLSGLGLAA

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Crispr_ID: CP033019_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033019_3

5381114-5381266

Orphan

Consensus_repeat	Method
GCGTACTGTCTTCGGCTTTGCGCCTGGCCCCAGACATTTTTCAGGCGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033019_3

>merge|CP033019|3|5381114-5381266|CRISPRCasFinder
GCGTACTGTCTTCGGCTTTGCGCCTGGCCCCAGACATTTTTCAGGCGCCAAATGGCTGCCTGCGAAAATGCCTGGGGCGTTGTTGCTTCGCCTCGCCGTACTAGCGTACTGTCTTCGGCTTTGCGCCTAGCCCCAGACATTTTTCAGGCGCCA

>CP033019|3|3|5381114-5381266|CRISPRCasFinder
GCGTACTGTCTTCGGCTTTGCGCCTGGCCCCAGACATTTTTCAGGCGCCA	AATGGCTGCCTGCGAAAATGCCTGGGGCGTTGTTGCTTCGCCTCGCCGTACTA
GCGTACTGTCTTCGGCTTTGCGCCTAGCCCCAGACATTTTTCAGGCGCCA

Protein	Signature genes	Signature genes Name	Protein_function
CP033019.1\|AYM78569.1\|5372166_5373099_+\|transcriptional-regulator-GcvA	unknown	unknown	gnl\|CDD\|182990
CP033019.1\|AYM78572.1\|5375314_5376160_+\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
CP033019.1\|AYM78567.1\|5370826_5371108_-\|hypothetical-protein	unknown	unknown	unknown
CP033019.1\|AYM78571.1\|5373998_5375147_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340951
CP033019.1\|AYM78582.1\|5385956_5387021_-\|phage-portal-protein	unknown	unknown	gnl\|CDD\|222860
CP033019.1\|AYM78577.1\|5381342_5382362_-\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|177883
CP033019.1\|AYM78578.1\|5382518_5383199_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
CP033019.1\|AYM78584.1\|5389801_5390821_+\|phage-major-capsid-protein,-P2-family	unknown	unknown	gnl\|CDD\|368296
CP033019.1\|AYM78574.1\|5377989_5378472_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276836
CP033019.1\|AYM78568.1\|5371168_5371942_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
CP033019.1\|AYM78579.1\|5383358_5383571_+\|hypothetical-protein	unknown	unknown	unknown
CP033019.1\|AYM79800.1\|5387017_5388829_-\|terminase	unknown	unknown	gnl\|CDD\|222859
CP033019.1\|AYM78575.1\|5378516_5379497_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182228
CP033019.1\|AYM78583.1\|5388965_5389754_+\|phage-capsid-protein	unknown	unknown	gnl\|CDD\|368675
CP033019.1\|AYM78576.1\|5379774_5381061_+\|Glu/Leu/Phe/Val-dehydrogenase	unknown	unknown	gnl\|CDD\|223411
CP033019.1\|AYM78580.1\|5383672_5384713_+\|hypothetical-protein	unknown	unknown	unknown
CP033019.1\|AYM78570.1\|5373196_5373967_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
CP033019.1\|AYM79799.1\|5384678_5385332_+\|NADAR-family-protein	unknown	unknown	gnl\|CDD\|271319
CP033019.1\|AYM78581.1\|5385744_5385960_-\|hypothetical-protein	unknown	unknown	unknown
CP033019.1\|AYM78573.1\|5376166_5377990_+\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594

Protein	Function_ID	Function_description	E-value
CP033019.1\|AYM78569.1\|5372166_5373099_+\|transcriptional-regulator-GcvA	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	6.58339e-111
CP033019.1\|AYM78572.1\|5375314_5376160_+\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	3.18246e-112
CP033019.1\|AYM78584.1\|5389801_5390821_+\|phage-major-capsid-protein,-P2-family	gnl\|CDD\|368296	pfam05125, Phage_cap_P2, Phage major capsid protein, P2 family.	0
CP033019.1\|AYM78571.1\|5373998_5375147_+\|MFS-transporter	gnl\|CDD\|340951	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters. The gene encoding Sinorhizobium meliloti membrane protein MosC is part of the mos locus, which encodes the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine. MosC belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.7329e-83
CP033019.1\|AYM78582.1\|5385956_5387021_-\|phage-portal-protein	gnl\|CDD\|222860	PHA02536, Q, portal vertex protein; Provisional.	0
CP033019.1\|AYM78577.1\|5381342_5382362_-\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|177883	PLN02240, PLN02240, UDP-glucose 4-epimerase.	0
CP033019.1\|AYM78578.1\|5382518_5383199_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	6.25282e-98
CP033019.1\|AYM78574.1\|5377989_5378472_+\|hypothetical-protein	gnl\|CDD\|276836	cd01385, MYSc_Myo9, class IX myosin, motor domain. Myosin IX is a processive single-headed motor, which might play a role in signalling. It has a N-terminal RA domain, an IQ domain, a C1_1 domain, and a RhoGAP domain. The catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. CyMoBase classifications were used to confirm and identify the myosins in this hierarchy. .	0.000314834
CP033019.1\|AYM78568.1\|5371168_5371942_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.35726e-63
CP033019.1\|AYM79800.1\|5387017_5388829_-\|terminase	gnl\|CDD\|222859	PHA02535, P, terminase ATPase subunit; Provisional.	0
CP033019.1\|AYM78575.1\|5378516_5379497_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182228	PRK10082, PRK10082, hypochlorite stress DNA-binding transcriptional regulator HypT.	1.03126e-39
CP033019.1\|AYM78583.1\|5388965_5389754_+\|phage-capsid-protein	gnl\|CDD\|368675	pfam05929, Phage_GPO, Phage capsid scaffolding protein (GPO) serine peptidase. This family consists of several bacteriophage capsid scaffolding proteins (GPO) and some related bacterial sequences. GPO is thought to function in both the assembly of proheads and the cleavage of GPN. The family is found to function as a serine peptidase, with a conserved Asp, His and Ser catalytic triad, as in subtilisin, and as represented in MEROPS:S73. The family includes capsid assembly scaffolding protein from Enterobacteria phage P2 which cleaves itself and then becomes the scaffold protein upon which the bacteriophage prohead is built - a mechanism quite common amongst phages.	3.64611e-115
CP033019.1\|AYM78576.1\|5379774_5381061_+\|Glu/Leu/Phe/Val-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	0
CP033019.1\|AYM78570.1\|5373196_5373967_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.57199e-71
CP033019.1\|AYM79799.1\|5384678_5385332_+\|NADAR-family-protein	gnl\|CDD\|271319	cd15457, NADAR, Escherichia coli swarming motility protein YbiA and related proteins. This family of uncharacterized domains was initially classified as Domain of Unknown Function (DUF1768). It contains members such as the E. coli swarming motility protein YbiA. Mutations in YbiA cause defects in Escherichia coli swarming, but not necessarily in motility. More recently, this family has been predicted to be involved in NAD-utilizing pathways, likely to act on ADP-ribose derivatives, and has been named the NADAR (NAD and ADP-ribose) superfamily.	1.66208e-45
CP033019.1\|AYM78573.1\|5376166_5377990_+\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0

>CP033019.1|AYM78576.1|5379774_5381061_+|Glu/Leu/Phe/Val-dehydrogenase
MTSKHALPSYLNPEDLGPWGVYLEQIDRVTPYLGNLSRWVETLKRPKRILTVDVPIERDDGTIAHYEGYRVQHNLSRGPGKGGVRFHQDVTLSEVMALSAWMTVKNAAVNVPYGGAKGGIRVDPKTLSRNELQRLTRRYTSEISMIIGPNKDIPAPDVNTNEQVMAWMMDSYAMIGGNMSTGVVTGKPISLGGSLGRRDATGRGVFVVGCDAAAKVGMSLEGAKVIVQGFGNVGGVAARMFAEAGSKVVAVQDHKTTVVHSGGLNIPQLLAHVAEVGSVEGFPGAEAFVPREDFWGIDCDILIPAALEQQITAERAQVIRAKIILEGANGPTLPAADDILTDRGVLIVPDVLANAGGVTVSYFEWAQNFSSFFWTEEEINSRLTRIMREAFDAVWQVSQEKKVSMRTATFILACTRVLQAREVRGLYP
>CP033019.1|AYM78575.1|5378516_5379497_+|LysR-family-transcriptional-regulator
METKWLEDFISLAETHNFSRSAALRHVTQPAFSRRIQSLENWLGIDLVDRTSYPTRLTPAGAVFYEQALEMLGQINGVRALLRGKRAATQTSVDFAVPHTLSLTFMPKWLTALEEGFAPINSRLMALNVHDAVLQLVDGGCDLLLCYHHPRQPVQLDPGRYDMLVMGRETLRAYARCGQDKVPDFVLPGSAREPLPFLSYTNNAYLGRMVELLLADAKAPLFLETCYETDMAEGLKMMALEGRGIAFLPESAVMRDVKYKHLARADGGAPGWEIELEIRLYRERPSSLRPGKQIVESLWQYLVQVQESAARGGKKRRRAAVTTIPS
>CP033019.1|AYM78574.1|5377989_5378472_+|hypothetical-protein
MEALSPDLIYQAVKILGAQPDAEDAVEAQVRTLVGDDLTVRRLADVVPEAFGLVLVSHLPGAENMTLPATFRAQDEDGEWVEFPLRREPIFVVAADIAQHTFHNGPRALIKNLADRSSLLSAINKALNAGGSLDGTTLGPPSFFGLPASLYRPAASAETP
>CP033019.1|AYM78573.1|5376166_5377990_+|DNA-helicase-RecQ
MNQDLNQRALHLLQTVFGYPAFRGQQADIVDHVSHGGDALVLMPTGGGKSLCYQIPALLRDGVGVVVSPLIALMQDQVDALEEVGVRAAFLNSTQTYEEASRIERLVRTGGIDVVYVAPERLMTQRCLDLFQASKISLFAIDEAHCVAQWGHDFRPEYIKLSVLHEQFPDVPRIALTATADPQTRAEIALRLQLEDARQFVSSFDRPNIRYQIVEKANGRKQLLDFINTEHAGDCGIVYCLSRKKVEETAEFLNQSGIRALPYHAGMEYAKRSANQARFLREENIVMVATIAFGMGIDKPDVRFVAHLDLPKSIEGYYQETGRAGRDGMAANAWMAYGLQDVVLQRRMIDESEADDTFKRVLGVKLDAMLGLCETLSCRRMRLLEYFGEPASPCGNCDTCLVPPVSFDGTVPVQKLLSAIYRVDQRFAGGHVIDVLRGVESERIKTWHHDSLSVFGIGSDLGEAEWKSILRQAIALGLVSVDHEQYSSLKLTDASRPVLKGGQKVQLRQYQKPVKTSKRSTSVAKGYVETDLSTSEQAIFDKLRWWRVETARTHNVPAYVIFVDATLREIAKAKPTSLEQMRGVSGVGEKKLASYGDEIVAMILEMI
>CP033019.1|AYM78572.1|5375314_5376160_+|undecaprenyl-diphosphate-phosphatase
MDLILALKAIIMGLVEGFTEFLPISSTGHLILAGSLLDFTKDVSKEVMDVFEIAIQAGAILAVCWEYRQRIGSVLSTFGSEAKSRKFVLNVAIAFLPLAVIGLAIGKMIKHALFKPVPVAMAFIIGGIVILLVERRARTNPVTVRVNSVDEMTPFDALKVGCAQAFALIPGTSRSGSTIIGGMLLGLSRKTATEFSFFLAIPTLLAATAYSLYKARDILSATDVPLFGLGTVAAFISAFLCVRWLLRYISSHDFTFFAWYRIVFGLLVLASAHYGWVVWAE
>CP033019.1|AYM78571.1|5373998_5375147_+|MFS-transporter
MHLTGTLQQRATRLVFFAAGLGMAAWAPLVPYAKSRLSLDEATLGILLLCLGAGSLCAMPFTGMLTARFGCRKVIVGAGLLLTAILPGLALAATPLQLGLVLLVFGAAMGTFDVAINIQAVIIEKANGGAMMSGFHALFSVGGFAGAACMALLLWLGLTPAWSCAVVMLLLCGVLGAAQGHLLPTASASGEKTPLFVMPHGAVIFIGLLCFIVFLAEGAILDWSALFLTTTRGVEEAKGGLGYAAFAIAMTVGRFTGDKVVTRFGGKRVLTIGGLCAAAGFFLAVLAPHASLAMAGFVLIGLGAANIVPILFTAAGQQHAMPASLAVAAITTIGYAGILAGPAVIGFVAHATSLNIAFAMLGAALLLVAASARLVAPAKQRS
>CP033019.1|AYM78570.1|5373196_5373967_+|DeoR/GlpR-transcriptional-regulator
MSATLLLKQRHALIQQQLHADGRVLALDLARQLDVSEDTIRRDLREMAAAGLCQRVYGGALPLAPDGGTLTQRKQEAPERKARLAQAAVSLVRAGQVLFLDAGSTNLAIAGALPQLALTVITNAPSIAMVLMERPEIELIMAGGRVDRRAGASLGPQALRTVERMHPDLCFLGACGADADAGVTAFNYDEAEFKRSIAGASKAVVVAVTSDKLGTAAPFGVLATGLLQHLVLEADADAAHAAAFERLGVQVLRARA
>CP033019.1|AYM78569.1|5372166_5373099_+|transcriptional-regulator-GcvA
MKTPIHLNALRAFEASARHQSFSAAAAELNVSPAAVGQLVRNLEDWLGAPLFHRHTAGKTRLVATQAAERALPDLRAGFDRLLLGLERLKEGSLNGVLTVTVSPAFAAKWLLPRIERFQSVCPETDVRLDTSLKPVDFVSQRIDIGVRYGTGNWPGLSADKLMDEEVYPVCSPAFLQQHAPLRQPADLARQTLIHDLSMDGHGDFPTWEAWLQKAGVRDSAASRGMKINNSAAVLQAAAEGHGVALARSVMAHDDIASGRLVRLCGAMTFLSPLAYYVVYRPESAGLPRLATFRGWLLEEAGKQAAAVAR
>CP033019.1|AYM78568.1|5371168_5371942_-|SDR-family-oxidoreductase
MSKQFEGKKLLVVGGTSGMGLATARVVLEQGGSAVIVGHRAEKTEEARKALSALGTVWAVTADLSSDAGLAALLKTLDEQHADIDLLVNAAGVFFPKPFLEHGAADYDQYMNLNKALFFITQKVAAHLVAGGRPGSIVNIGSMWGKQAIAATPSSAYSMAKAGLHSLTQHLAMELASKQIRVNAVSPAVVQTPIYEGFIPKAEVHEALQGFNGFHPIGRVGTPLDVAEVVAFLLSDKAAWVTGAVWDVDGGVMAGRN
>CP033019.1|AYM78567.1|5370826_5371108_-|hypothetical-protein
MAYLQITLKIANANRAAAAGVYQQYKAPFLAGIAGAQSKQLLIREEDVQVLHGFDSVGNANAYLQSALFNSDVVVALTPLLDAAPDVRIYTVA
>CP033019.1|AYM78577.1|5381342_5382362_-|UDP-glucose-4-epimerase-GalE
MSKKILVTGASGFIGSHTCVELLAAGFEVVAVDNLCNSAREAMARVERIAGKSVPFYEADVRDRTAMAAVLREHAIDAVIHFAGLKAVGESVAQPLMYMDNNVSGTVALLEVLAAANVKRFVFSSSATVYGDPEALPIVESSRLSVTNPYGRSKLMVEEILADLVHADAQWQVGVLRYFNPVGAHASGLIGEDPAGIPNNLMPFIAQVAVGRRERLAVFGNDYDTPDGTGVRDYIHVVDLALGHVAALNRLFSTEGGFTVNLGTGHGYSVLDTVRAFEAASGRKVPYDIVPRRPGDIASCYASADKAKQLLGWQAQKNIDDMCRDHWRWQHQNPQGYAA
>CP033019.1|AYM78578.1|5382518_5383199_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MMYDPTEHRIRSFVTRAGRLSVAQARALETLGPQFLLPFAKESMDFEQVFGRKAPVILEIGFGMGATTAHIAKAMPEKDFIGVEVHTPGVGSLLKLIGEESLTNLRLLQHDAVEVLTHMIPANSLAGIHVFFPDPWHKARHNKRRLIQSPFVKQLTDRLAPGGYLHCATDWEDYAVQMLDVLGAEPQLRNSADAYAPQPAYRPLTKFENRGLKLGHGVWDLVFIKK
>CP033019.1|AYM78579.1|5383358_5383571_+|hypothetical-protein
MRACDPFLLRKGDIIAALEAMNHAVDFMVVEQIFRLNDGFFCFICYLHLETHQSSKYYRPQVKNVQPLRP
>CP033019.1|AYM78580.1|5383672_5384713_+|hypothetical-protein
MAKRTNLMEAIANTIQSYRKGEIPVPTVDHVDRWISQFTPENQLPMLQEFSDVIESSFITHESFVRFLGGLMNNAALTGKTPKDFWSKVNFLRVQKDGVSQRAMLKLMAVQLKDTFGLDLAKCGADDGDFMYLDDIMCTGSRVGNDIVDWIKNDAPKECRLHIVLAVTHTTGEYYLRNTRLENAKKEAGKQGIKITVWRALELENTVYWNRNADVYWPSELPNLETVKSYAANGKFPFKPRELGGKSKIFKSEEGRKILEAEFLLAGMKIRSHHSTPKDSLRPLGFGPFGIGFGSTLVTYRNCPNTAPLAVWWGDGGASNTALQWYPLLPRKTYSSAENVFSKCFD
>CP033019.1|AYM79799.1|5384678_5385332_+|NADAR-family-protein
MRKMSSVNASTKFELLRTYTRSECVVFHRTKDPFGGLSNMAGGYAVTVNGVRFRTTEALYQACRFPQLPEVQRLVISEASPIVAKRKTMPFRDQTRKDWDSIRHKIMRWCLRVKLAQNYTEFGALLLSTGDGHIVEQSSKDTFWGARVIDQNTLAGENVLGRLLMELREDARIDEKQILRVVPPLPIPDFNLFGEPIEIVTAPNSEALHGYRSTMLF
>CP033019.1|AYM78581.1|5385744_5385960_-|hypothetical-protein
MSDHIDNTDKIIFAEVARGLAAVRGRPALAAHGCCHYCDEALAPALLFCGVDCRDDYDKVQAAKSRAGRPG
>CP033019.1|AYM78582.1|5385956_5387021_-|phage-portal-protein
MRKARHLRARGQQAQPAPDSPATAPATAGIEAFSFGDPTPVLEHADILDCFECWKNGHWYEPPVNLAGLAKSFNAGVHHSSAIHFKANVLTSTLMPTKYLSRDGFKRMALDYLTFGNAYLEDRPSRSGKALAYQHALAKYMRRGVDLDTYYFVNGYQAVHQFDKGRVFHLMEPDVNQELYGVPQYLSALQSAWLNEAATLFRRKYYKNGSHAGFVFYMTDAAANTQDVDNLRQAMRDSKGPGNFRNLFMYAPNGKKDGIQILPVSDVAAKDEFFNIKSVTRDDQLAAHRVPPQLMGILPNNAGGFGAVEPAARVFARNELVPLQAQFEAINEWAGVEVVKFAPYDLGLGKETAQ
>CP033019.1|AYM79800.1|5387017_5388829_-|terminase
MLTIEKTSEQTIDGIIGELAVPESEPRRAARALYWKGWRISSIARHLGIKRSTINSWKERDEWDKAQAIEHVEASAELRLVKLIEKEVKSGSDYKEIDLLARTIVQMARVRRYEQPGGNEVDLNPKLANRNAGPKKKPTRNDFSEEQKIQLLDAFQDSLFDYQKVWYRNGDQRTRAILKSRQIGATWYFAREALADAMATGRNQIFLSASKSQAHVFKQYIVQFAREAAGIELTGDPIVLPNGAHLYFLGTNARTAQGYHGNFYFDEFFWTQNFQELNKVASGMAIHKKWRKTYFSTPSSTTHQAYPFWTGELFNKRRAKADQVNIDVSHSRLSSGFTGEDKIWRQIVTILDAERGGCNLFDIDELRNFEYSPDQFDNLLMCNFIDDSASVFPLAELQRCMVDSWVEWDDYKPLLGLRPFGNRPVWIGYDPALNGDSAGCVVLAPPMTAGGKFRILERHQWRGQSFEDHADAIRQMTQRYNVEYIGIDTTGMGIGVLPIVRGFFPAVTALNYSPEVKTRMVLKAKNIISKGRLEFDAGWTDIAQSFMAIHKTLTPSGRHVTYIAGRSDETGHADLAWACMHALDHEPFEGTTDNHQSFMEIYS
>CP033019.1|AYM78583.1|5388965_5389754_+|phage-capsid-protein
MPKSQFFRVATEGATTDGRNIDRATIEQIAATYNPKTYAARIWLEHIRGILPDSQFKAYGDVIAVKAEEVDTDNGKKLALFAQIEPTPELVAINKAKQKLYTSLEIQPDFADSAQPYLVGLGVTDSPASLGTEALKFSASRKQQSANLFTSAVEVTLEFEEPQGTKLADAMKNLLSRFSNKSGADAAQFADISEAVQALAGHVVTANDNYTGTLARLEKTETALQATQDELAAFKAQMDEAPGNGPRRPAATGNDGAVQTEF
>CP033019.1|AYM78584.1|5389801_5390821_+|phage-major-capsid-protein,-P2-family
MKKQTRQVFGQYETRLGHLNDTDNVAKTFSVTPSVQQKLENKMQESSEFLSKVNIIGVGEQEGEKLGLGVSGPIASRTNTKDKERETRDLSTMDSTKYRCEQTNFDTHLSYAKLDAWAKFQDFQSRVANAILTRQALDRIVIGFNGVKVMATTDLAANPLLQDVNKGWLQHLREQAPDRVLGLVASGMPGKVIIGDVDGADYANLDAAVADAVNLLDPWYQEDTNLVAIVGRKLLNDKYFPLVNTKQAPTETLAADIIISQKRIGGLPAARVPYFPDNAILITRFDNLSIYFQDGARRRRVVDEPKRDRIENYESSNDAYVIEDLGLAALVENIELKDK

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Crispr_ID: CP033019_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033019_4

6250928-6251004

Orphan

Consensus_repeat	Method
GCGCAGCGTCATCCGACATTGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033019_4

>merge|CP033019|4|6250928-6251004|CRISPRCasFinder
GCGCAGCGTCATCCGACATTGCCAGCAAGCGGCCAATATCTGTAGGTGGGATTAGCGCAGCGTCATCCGACATTGCC

>CP033019|4|4|6250928-6251004|CRISPRCasFinder
GCGCAGCGTCATCCGACATTGCC	AGCAAGCGGCCAATATCTGTAGGTGGGATTA
GCGCAGCGTCATCCGACATTGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP033019.1\|AYM79249.1\|6254918_6256415_+\|peptidase-S41	unknown	unknown	gnl\|CDD\|143477
CP033019.1\|AYM79241.1\|6243814_6244342_-\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|274270
CP033019.1\|AYM79246.1\|6249055_6249580_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP033019.1\|AYM79245.1\|6248359_6249064_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP033019.1\|AYM79238.1\|6241004_6242429_+\|adenosylhomocysteinase	unknown	unknown	gnl\|CDD\|377487
CP033019.1\|AYM79257.1\|6265488_6267303_+\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
CP033019.1\|AYM79256.1\|6264819_6265404_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176885
CP033019.1\|AYM79247.1\|6249705_6250833_+\|4-hydroxyphenylpyruvate-dioxygenase	unknown	unknown	gnl\|CDD\|225726
CP033019.1\|AYM79239.1\|6242626_6242983_+\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|377198
CP033019.1\|AYM79255.1\|6264238_6264823_+\|protein-tyrosine-phosphatase	unknown	unknown	gnl\|CDD\|350378
CP033019.1\|AYM79244.1\|6247176_6248274_+\|multifunctional-CCA-addition/repair-protein	unknown	unknown	gnl\|CDD\|182810
CP033019.1\|AYM79254.1\|6263759_6264242_+\|hypothetical-protein	unknown	unknown	unknown
CP033019.1\|AYM79248.1\|6251197_6254794_+\|indolepyruvate-ferredoxin-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|236404
CP033019.1\|AYM79252.1\|6261380_6262526_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
CP033019.1\|AYM79253.1\|6262635_6263763_+\|galactosyldiacylglycerol-synthase	unknown	unknown	gnl\|CDD\|340861
CP033019.1\|AYM79251.1\|6259498_6261319_+\|peptidase-M14	unknown	unknown	gnl\|CDD\|349460
CP033019.1\|AYM79250.1\|6256580_6259304_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP033019.1\|AYM79243.1\|6246447_6247164_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|198303
CP033019.1\|AYM79242.1\|6244446_6246435_+\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381604
CP033019.1\|AYM79240.1\|6242969_6243800_+\|methylenetetrahydrofolate-reductase-[NAD(P)H]	unknown	unknown	gnl\|CDD\|273212

Protein	Function_ID	Function_description	E-value
CP033019.1\|AYM79249.1\|6254918_6256415_+\|peptidase-S41	gnl\|CDD\|143477	cd07561, Peptidase_S41_CPP_like, C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.	4.87632e-51
CP033019.1\|AYM79241.1\|6243814_6244342_-\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|274270	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism. [Central intermediary metabolism, One-carbon metabolism].	6.06401e-45
CP033019.1\|AYM79246.1\|6249055_6249580_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.2951e-50
CP033019.1\|AYM79245.1\|6248359_6249064_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.26234e-06
CP033019.1\|AYM79238.1\|6241004_6242429_+\|adenosylhomocysteinase	gnl\|CDD\|377487	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase.	0
CP033019.1\|AYM79257.1\|6265488_6267303_+\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
CP033019.1\|AYM79256.1\|6264819_6265404_+\|hypothetical-protein	gnl\|CDD\|176885	cd08876, START_1, Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, and autoimmune disease.	6.12932e-14
CP033019.1\|AYM79247.1\|6249705_6250833_+\|4-hydroxyphenylpyruvate-dioxygenase	gnl\|CDD\|225726	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only].	7.65202e-180
CP033019.1\|AYM79239.1\|6242626_6242983_+\|phage-holin-family-protein	gnl\|CDD\|377198	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV. These proteins are predicted transmembrane proteins with probably four transmembrane spans. The 1.E.40 is represented by the mycobacterial 4 phage holin, but it also contains many cyanobacterial. proteobacterial and firmicute proteins. Holins are encoded within the genomes of Gram-positive and Gram-negative bacteria as well as in those of the bacteriophage of these organisms. The primary function of holins appears to be transport of murein hydrolases across the cytoplasmic membrane to the cell wall where these enzymes hydrolyze the cell wall polymer as a prelude to cell lysis. When chromosomally encoded the enzymes are therefore autolysins. Holins may also facilitate leakage of electrolytes and nutrients from the cell cytoplasm, thereby promoting cell death. Some may catalyze export of nucleases.	2.51377e-23
CP033019.1\|AYM79255.1\|6264238_6264823_+\|protein-tyrosine-phosphatase	gnl\|CDD\|350378	cd14529, TpbA-like, bacterial protein tyrosine and dual-specificity phosphatases related to Pseudomonas aeruginosa TpbA. This subfamily contains bacterial protein tyrosine phosphatases (PTPs) and dual-specificity phosphatases (DUSPs) related to Pseudomonas aeruginosa TpbA, a DUSP that negatively regulates biofilm formation by converting extracellular quorum sensing signals and to Mycobacterium tuberculosis PtpB, a PTP virulence factor that attenuates host immune defenses by interfering with signal transduction pathways in macrophages. PTPs (EC 3.1.3.48) catalyze the dephosphorylation of phosphotyrosine peptides, while DUSPs function as protein-serine/threonine phosphatases (EC 3.1.3.16) and PTPs.	7.75149e-34
CP033019.1\|AYM79244.1\|6247176_6248274_+\|multifunctional-CCA-addition/repair-protein	gnl\|CDD\|182810	PRK10885, cca, multifunctional CCA addition/repair protein.	0
CP033019.1\|AYM79248.1\|6251197_6254794_+\|indolepyruvate-ferredoxin-oxidoreductase-family-protein	gnl\|CDD\|236404	PRK09193, PRK09193, indolepyruvate ferredoxin oxidoreductase; Validated.	0
CP033019.1\|AYM79252.1\|6261380_6262526_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	4.02208e-18
CP033019.1\|AYM79253.1\|6262635_6263763_+\|galactosyldiacylglycerol-synthase	gnl\|CDD\|340861	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins. beta-diglucosyldiacylglycerol synthase (processive diacylglycerol beta-glucosyltransferase EC 2.4.1.315) is involved in the biosynthesis of both the bilayer- and non-bilayer-forming membrane glucolipids. This family of glycosyltransferases also contains plant major galactolipid synthase (chloroplastic monogalactosyldiacylglycerol synthase 1 EC 2.4.1.46). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	4.31527e-102
CP033019.1\|AYM79251.1\|6259498_6261319_+\|peptidase-M14	gnl\|CDD\|349460	cd06241, M14-like, Peptidase M14-like domain; uncharacterized subgroup. Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavage. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.	8.42804e-78
CP033019.1\|AYM79250.1\|6256580_6259304_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	5.00205e-39
CP033019.1\|AYM79243.1\|6246447_6247164_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|198303	cd03194, GST_C_3, C-terminal, alpha helical domain of an unknown subfamily 3 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.	1.48215e-57
CP033019.1\|AYM79242.1\|6244446_6246435_+\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381604	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins. Catalytic domain of the 70kda soluble lytic transglycosylase (LT)-like proteins, which also have an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	1.73235e-62
CP033019.1\|AYM79240.1\|6242969_6243800_+\|methylenetetrahydrofolate-reductase-[NAD(P)H]	gnl\|CDD\|273212	TIGR00676, 510-methylenetetrahydrofolate_reductase., 5,10-methylenetetrahydrofolate reductase, prokaryotic form. The enzyme activities methylenetetrahydrofolate reductase (EC 1.5.1.20) and 5,10-methylenetetrahydrofolate reductase (FADH) (EC 1.7.99.5) differ in that 1.5.1.20 (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while 1.7.99.5 (assigned in many bacteria) is flexible with respect to the acceptor; both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as 1.5.1.20 and 1.7.99.5, this model describes the subset of proteins found in bacteria, and currently designated 1.7.99.5. This protein is an FAD-containing flavoprotein. [Amino acid biosynthesis, Aspartate family].	8.60755e-129

>CP033019.1|AYM79247.1|6249705_6250833_+|4-hydroxyphenylpyruvate-dioxygenase
MQFQPWDNPMGTDGFEFVEYAAPDPKALGKLFENMGFTAIARHRHKDVTLYRQGDINFIINAEQDSFAQRFARHHGPSVCAIAIRVDDAAFVYRRALELGAWGFDNKTGPMELNIPAIKGVGDSLLYFVDRWRGKGADKPDAAAPGGIGDISIYDVDFVAIPGAVANPVGHGLTYIDHLTHNVHRGRMKEWASFYENLFNFREVRYFDIEGKLTGLKSKAMTSPCGKIRIPINESSDDKSQIAEYLDQYHGEGIQHIALGTDNIYASVQGMRDTGIDFQDTIETYYELVNRRLPNHGEQLDELRRLRILIDGHSTENERELLLQIFTQTVIGPIFFEIIQRKGDQGFGEGNFRALFESIELDQIKRGVLKDTSAA
>CP033019.1|AYM79246.1|6249055_6249580_-|Lrp/AsnC-family-transcriptional-regulator
MSKITLDKTDRKILAVLQADGRLSNQDVAEQVSLSPSPCLRRVKRLEEAGVIRQYVALLDPEKIGLGLLAYVNVRLEKHSDATAHSTARVLAPNLVTNTSPRADFAVAVAHWPEVVACYAMTGEMDYLLRVHVEDMEHFSRFMMATLLRHPAVLDVKSSFALQRIKDTTALPLL
>CP033019.1|AYM79245.1|6248359_6249064_+|GNAT-family-N-acetyltransferase
MTLPKLFQNPFRRWLSRSGGGRPTVLVKQLHERDRRRMMKHFLSLEKSDRLLRFGSALPDELVAQYVQKMDFSRDMIYGVYNSLFKLVGVGHLAFAPKDQSPAKSVVTDKEQVAEFGVSVSKSMRGMGVGSKLFERAAIHCRNNDVDTLYMHCLSSNKTMMHIAKKAGMEIQRDYGEADAYLKLLPPNPTSMLQEAVQEQFAMFDYTFKANARAASKLFERLPGRKKQPGPPSQ
>CP033019.1|AYM79244.1|6247176_6248274_+|multifunctional-CCA-addition/repair-protein
MKIYTVGGAVRDQLLGLPVKDHDHVVVGATPEDMLRQGFRPVGKDFPVFLHPKTQEEYALARTERKTAPGYRGFVFHTAPDVTLEDDLVRRDLTINAIARAEDGTLTDPFGGVADIERRVFRHVSDAFGEDPVRILRLARFAARFHTFTVAPATMALMRQMVANGEVDALVAERVWQEVAKGLMESHPARMLTVLHECGALARIMGEIQLSERLVQVVDHAAAQGHDLPVRFAALMLHLSKDAIEQLSERLRVPNECRELAIMAARERDNINGALDLGAEAIVSLCERCDGLRKPQRFVQLLQAVACDGLVTGGFPQAARLQGGLDAARGVNAGALAQGCTEPKRIPEIIHAARVAAVAAFLAQA
>CP033019.1|AYM79243.1|6246447_6247164_+|glutathione-S-transferase-family-protein
MQTTILDPSLTQTLAAAREPGLTLIIGNKNYSSWSMRPWVAMTAFGIPFHEVRVLLDQSDTATKIAEYSACGRVPVLLAGEITIWDSLAICEYLAEQFPDKHLWPQDVAARAMARCVCAEMHSGFTGLRTDMSMNIKAKLPGRGRTAAAQADIGRISEIWEECLSRFGHHQFLFGEFSIADAYFAPVVMRFRTYGVSLAPALNAYCERVQAHPAVARWIAEALAETETAPKHDAELPD
>CP033019.1|AYM79242.1|6244446_6246435_+|lytic-transglycosylase-domain-containing-protein
MISPLKWIAGTMLCVASALSPLAALAQVSTTVPPAAPDTRSEDDAFLLLRDAARKDDVEKADFYAGRLTNYQIPSYVDYYRLKPRIKLLTEAQFRDYLNRYKGSAIADRFRNDWLLELGRKRDWVVFDEQYPQFALDDDTQLKCYALMSRAAKGQNVASEARKLLVSPPGYGEACGSLIAALAQNGQFDANDLWAQIRLAGQTNATGPARRIALLLGASDAKMAQAIDLPALVLAKGPGASRADHEMYLVAVGRMAKSTLKLGVVALQKASAQLTAQEQAIGWASLALQASYSLAPEAFEYWQKTNGAPLTQEQMQWKARIALREGNWPQVKTAIQAMPASLRADPTWVYWLARAQQAETPGRPNAQADALYRTISDQSNFYGLLANEELGNHLVLPPPGQPVTPAEIAAMAANPGLQRALKFFNMRLRFEGTREWNWELRSMTDRQHLAAAEFARQNNVLDRMVNTSDRTRLEVDYTQRYPTPHDDVMHPATQTLGLDKAWVYGLIRQESRFIMDAQSHVGASGLMQVMPSTARYVAKKIGLTDFVTETLSDVRTNVLLGTNYLNMVLGGLDGSQVLASAAYNAGPGRLRIWRATMTRPLEGAVFAEIIPYTETRGYVKNVMANATYYAALFEKSPQSLKARLGTVGPKNSAVAADLPSSN
>CP033019.1|AYM79241.1|6243814_6244342_-|5-formyltetrahydrofolate-cyclo-ligase
MRKALLAARRALPETTRARWDAAIAQRLLGWCAGENVKELGVYWPLHGEPDLHEAYAQLAARGVQLSLPVVLEKHAPLAFSDWTPGEPMVKDGMGVAVPAQLRLRQAPAALLVPCLGFNQERFRLGYGGGYYDRTLAATPRPHTLGVAYACLAANFPNGEYDIALDHIVTEGDLF
>CP033019.1|AYM79240.1|6242969_6243800_+|methylenetetrahydrofolate-reductase-[NAD(P)H]
MEKHNFSIEFFPPKTLEGAEKLRATRVKLSELHPKYFSVTFGAGGTTQQGTLDTVREILAAGEQAAPHLSCVGGSRESIRAVLADFKAAGVKRIVALRGDLPSGYGASGEFRYANELVEFIRAETGDHFHIEVAAYPEVHPQARSPQDDLNAFARKVQAGANAAITQYFYNADAYFQFVEQTQKMGINVPIVAGIMPITNYTQLMRFSDMCGAEIPRWVRLKLASFGDDSASIKAFGLDVVTGLCERLLEGGAPGLHFYSMNQAAPTTALWQRLVK
>CP033019.1|AYM79239.1|6242626_6242983_+|phage-holin-family-protein
MRLLLIWFINAAALFAVPYLMHSVTMSSGWTALLAAAVLGLVNALIRPLLILLTLPVTFLSLGLFILIINGFLFWLVAQVIDGFHVASFWSAVGGAILYSIISWALSTLLLSNDDGKA
>CP033019.1|AYM79238.1|6241004_6242429_+|adenosylhomocysteinase
MNAVLKSQHDYTIADITLAAWGDKEIKIAETEMPGLMAIREEFAAAQPLKGARITGSIHMTIQTAVLIQTLEALGAQVRWASCNIYSTQDHAAAAIAAAGTPVFAVKGESLDDYWEYTHRIFEWPDADGKAVYSNMILDDGGDATLLLHLGVRAETDLSVLANPGSDEEICLFNSIKKHLLADPTWYSKRLPEILGVTEETTTGVHRLYQMHKEGKLAFPAINVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKVAVIAGYGDVGKGSAQAMRALSAQVWVTEVDPICALQAAMEGYRVVTMDYACEHGDIFVTCTGNYHILTHDHLTRMKDQAIVCNIGHFDNEIDVASLKQYEWENIKPQVDHIIFPSGRRIILLAEGRLVNLGCGTGHPSYVMSSSFANQTIAQIELYANTANYPVGVYTLPKHLDEKVARLQLKKLNAQLTELTQEQADYIGVRTEGPYKPEHYRY
>CP033019.1|AYM79248.1|6251197_6254794_+|indolepyruvate-ferredoxin-oxidoreductase-family-protein
MNAPIKGSSLEPGAHASEISLNDKYTLERGRAFMTGTQALIRLPMLQRERDVKAGLNTAGYITGYRGSPVTSVDMTAIKAKKYLDEHHVKFHPGLNEDLAATAVWGTQQTNLFEDAKYDGVFGMWYGKGPGVDRCGDVFKHANNAGSAKHGGVLVLAGDDHAAKSSSTAHQSDHILNACGIPVLYPSSVQEYIDYGLHAWAMSRYTGLWVSMKCVTDIIESGAAVDFDPDRVQITLPTDFEMPAGGLNIRWPDTVLEQEVRMNSYKWYAALAYARANKLNKIIWDSPKARIGIITAGKSYLDTRQALADLGIDEQTASDIGIRLYKIGMTWPLEADGVHEFAKGLDEILVVEEKRQILEYALKEELYNLKDGERPRVVGKFDDTGEWSNQKGTGHGDWLLPATYELNPAMIARAIASRISRYYAGHPVEQRVKERIAYLEAKENVLKAISVKPDPQKDRTPFFCSGCPHNTSTKVPEGSRALAGIGCHYMVLWMDRETSTFTHMGAEGVTWVGQAPFTNEKHVFTNLGDGTYFHSGILAIRAAVSAKVNITYKILFNDAVAMTGGQEFDGPLSPAIISRQIAAEGVGPIIVVTDEPEKYPDDYAWAEGVTVRHRSELMDVQRELRDMPGVSAMIYDQTCASEKRRRRKRNEYPDPAKRAVINEAVCEGCGDCSVQSNCLSVEPLETELGRKRQINQSSCNKDFSCTTGFCPSFVTVEGGGLKKPKKAAAADKDAPAAPALPTPSIPSTAEPFGILVTGIGGTGVVTVGQILAMAAHVEGKGCSVLDMSGLAQKGGPVMSHVRLADRQEDIHSTRVGTGAADLVIGCDLIVTASRDALSRMGEGRSWAMINSTSSSTAAFVKNPDWQFPGASARMEIEKACGSDHVDFIDAGQIATALMGDSIATNMFMLGYAWQKGKVPLSEAAIMKAIDLNNVSVAFNKAAFNWGRAGAHDAASLVRMTTPAKVVEFKRIDTLDDIIEKRVALLTAYQDRAYAQQYLDFVGQVRAAESALNGPHLRLTEAVARYFYKLMAYKDEYEVARLYTDGAFQAKIASMFEGDIKLKFHLAPPIMAKTDAQGHLIKKEYGPWMLKAFGVLAKFKGLRGTAFDVFGHTAERKIERALIAEYRATVGGLLPKLTTAKLAQAVAIASIPEDIRGYGHVKERHLKAAKEKEASLLIAFNAPTPLPPVVAAPVAATVA
>CP033019.1|AYM79249.1|6254918_6256415_+|peptidase-S41
MHSLRLGSLAVSLVCVLSACGGGGGSSDSAPVVPPVTPTGPTALVASSTVANRCEAPRSGSSIDKPGSLLDEQTWVRSWIDETYLWYREVPTTYLPQSFSTAKAYFDVLKTTATTASGKPKDQFHFTYTTAEWEASLNGVELGYGMLLALTRTTPPRKAVISIVEPGSPADLAGLRRGDELQTVDGTDFVNAPDAASVKIINAGLFPAAQGTHTLAFSRNGSPLSANLQAVEVSTSAVQNERIIDTPTGKVGYLTFNTHNNVAERQLVETMRRFQAAGISDLVLDVRYNGGGYLDVASELAYMIAGPQVTTGKTFEQVLANDKTRPEAPVPFHTQSQGFAGPNPLPKGTPLPSLGLKRVTLLTTGNTCSASEAIINGLRGVDVQVNLIGGTTCGKPYGFYPTPNCGTTYFAVQFQGVNAKGFGDFADGMAPTCDVTDDYQHALGDPAEAMLAAALRYRGSGSCTPATGALRLPGSMASPAETAARLLRPAYKEIAVLK
>CP033019.1|AYM79250.1|6256580_6259304_+|TonB-dependent-receptor
MPIQFKLPPLTVAVLAILGGSAWQAHAQTQAPAADQQPAATPPAVVVTGSRIPRASLEGPSSVTILTGDEITKQGYKNVFDALTNQVQNSGFTQGEDFGNTFTPSANTISLRGLGPNHTLILLNGRRLADFPVAYEGTVNFTNLANIPSSIVDRIEILNGGASAIYGSDAIAGVVNVILKKQTEGFDINVKAGGTTRGGAGNQRVQLTGGGNFDKLHTLFSVELSQRDPLSSLQRDFMATRSGTPTNIASRRVVKAGSSGTYVDLGDTCTQFGDLFGGSTVKYQAKNGSYCASPKVGPTYWTTQTKNRSQNVFGSANYELSPETTLFADFLIGKNSTENNTRGPTWTSSSTGSSYFRNQNTDRYEAWTRYISPEEMGGVERYNRKWDDLATAISLGAKGRVPGTSSWQYEANYNASVYKSESHTPRALANIDSFFLGPKLGTDAAGVPVYAPDPARLSRRVTAAEFDSITGNSDSDDKAWTNTLSLATNGDLFQLPAGVAKIATIAEVGKQGFSNVPDARLNEGYFNVATKSDITAGTRTRYALGAEVNLPLHEKLTGTLAGRYDRYSFAGRHDGKFTYNGGLELRPTPELLFRANYATSFRAPDMNYIYKARGTGYYSSTTDYYRCGVAGQAIDDCDYANKSPGADYVQNGSKDLQSEKGKSFGVGAVWSPTSNFDVSVDYWNIKIDDLVTNLSSDKILRDEADCRLGKTDINSPTCVDTLNRVERFAANALNRAGEIKTITVNPINAAKQSSSGIDISVKYLLRTTDYGRFAFKANYAKVLSNKSQQFVGDEEIDELKSLNNSDWRDKLNLSVNWSAGDWSNTLLVSRYSKIPNAAGKAYLTPTALANISTVYRINDRATLSLIVNNVFDKIKRDDSGGWPYYPVGSYSPQGRQGWVEFNYHFGS
>CP033019.1|AYM79251.1|6259498_6261319_+|peptidase-M14
MLRLALLSAAILSVFASPAQAGAPLTTVAERSGFVSTGRYAEVEALCRQFQARYPKQVRCVEFGRTPENRPMLALAVSNTGALTPAEAARRKLPVLLVQGGIHAGEIDGKDAGFLALREVLEGKAAPGALDKQVLLFVPVFNVDGHERFGRWNRPNQRGPVEMGWRSTAQNYNLNREYMKADTPEMQHMLALVNAWDPLAYVDLHVTDGAQFEPDISIQVEPVHAGDAALRVAGTALRDQVLADLARQGSDPKPFYISFAENDNPQSGFVDSAPNPRFSHGYFQLRNRFGMLVETHSWKDYPTRVRITRNTIVSLLSQVAQHGAQWRQTALEADARAAQLAGATLPLTYKTTDKSRMIAFRGYAYTRTPSEVSGALMTRYDETTPQIWNVPLRDEIVPDLQQAAPKAGYLVPAAQAQMVAAKLRQHGVSYQVLATAPGTLPVETFRATLVKFGAQSFEGRQTAAVQGEWQKEERPVGAGALYVPVNQAKARLVVALLEPRAPDSLLAWGSFNTAFERKEYMEEYVAEDVARAQLAADPALAAQFHEKLASDPAFAKSPAARLEFFARRHASWDERLNLYPVLRTDAAPAGMASPPARTPKLSNRVD
>CP033019.1|AYM79252.1|6261380_6262526_+|ankyrin-repeat-domain-containing-protein
MGHSTLYNQHREAFFRVCDAVGENQVEQVRSLLEATPLLSTLRRYNMYDGESLLHLAAVSGSREVCALLVSLGMDIDLPLPGYRNHTPLSEAAGHGHVDTCRWLLDHGAAVDGLPDNILSPLDSACVDGHQDVVALLLQRGANPNRLHTRWNQAPVDIAAGWGFPAIVQMLATAGGVSILDVPQQAAASPQDVIRTFMHHSAGWVLPAVFSPDSGDARFSLGISCIGGKREFKLLFTAGLFQQSPMTELAVCLPARWPLTVHGFAEHSPWRFPVALLARLGRRTLDQASLAAGELLRRDDPYLADLAWPEGVDALLAIDKRWNPEPEEDDVADDDKVTIYLLVPVAYTKKGAPGASTLPALMERKLKGSWKVSALPFAIPR
>CP033019.1|AYM79253.1|6262635_6263763_+|galactosyldiacylglycerol-synthase
MTEKKQKKILLLSVSAGAGHLRAAQAIEAYAGLEQHTVASHLDVMDFVTPAFRKLYTDFYIKLVNKAPALWGYLYHATHDAPRDSSMQRLRRAVERLNTRALMAQIAAFQPDAIICTHFLPAELLSRALRQQQLACPVWVQVTDFDLHRMWVHEQMQGYFAATDEVAFRMRHEGIPAERIHVTGIPIMPAFAQAPGRAQCAQAFGLDPRRTTILLMGGGAGLGSLETVAARLLALPGDFQLIVLAGKNAAALAALQALAGQYPGRLLAQGFTSEVERLMACADLVITKPGGLTTSECLALGLPMIVNSPIPGQEERNADYLLEQGVALKAFDAVTLEYRVRLLLDHPEQLQAMRAKALALGRPRAALDVLAQVLA
>CP033019.1|AYM79254.1|6263759_6264242_+|hypothetical-protein
MTGGVVKPWQIALTLAWVALLGLFFAQVEIQIEGPAGWAANLPTWRIESHWLLDIFWGGRPMTGYHAWVFPFIALFFHFPMLFLAQWSPRLECRAIGCIMLFWIIEDYLWFVLNPAYGVAHFNPAHIAWHKHWLWWAPTDYWVSLLLAGVLLWFSYKRKS
>CP033019.1|AYM79255.1|6264238_6264823_+|protein-tyrosine-phosphatase
MTLSPLPHLLLLFLALAAGSAGAQAPGAPERNAEWATPLPHVSNLHQVTPVLFRSAKLDSADVAQLQTLGVKTVISLRSFHSDTQVLDGSGIRAVRIPINTWAIRDKHVIETMRSIRAAEQQGPVLLHCLHGADRTGLMAAMYRMLYQGWPRAKAIDELKNGGYGYHAVWKNIESYLKRVDVAALRAQIEQEKP
>CP033019.1|AYM79256.1|6264819_6265404_+|hypothetical-protein
MKTLLFALAACSACYPPAALAATPALDVRDVSKAGMPGKTFAATTSMPASVATVCAAIQDFAGYPQFMPNVDKIKVTAAGGGVSLVDVTLKLPMGEIKQYRLRMTPKVLDASCSLAWKLVPMEGLKVEDTIADTSGYWQLSPDPFDAGAAAVRYQVYTDPGPVPMGLGWIVDSMSRDSIPKMFDALRARVAARK
>CP033019.1|AYM79257.1|6265488_6267303_+|glutathione-regulated-potassium-efflux-system-protein-KefC
MEHHSFLINILFYLVAAIIMVPLAKRLGMGAVLGYLVAGVVIGPWGLGLIKNVEVILSFSEFGVVLLLFLIGLELEPRRLWLLRRPIFGWGGAQVGVVSAGLCAVAMAFGVDWRTALVGALGLSLSSTAIVLATLGERKLMSTPAGSAGFSILLFQDIAAIPMIALVPLLGGLVTHSGEPGWLRVAKLAAVLAALVIGGRFLVNPILRFIAKTDLREIFTAFALLLVIAICVLMESVGLSMALGTFMAGVLLADSEYRHELISDLEPFKGLLLGLFFIAVGMSVDFGVLRAQPLLILALVAGLLVVKIGLLYVLSKFFDIPRGQQLFFALLLSQGGEFAFVVFAAAEAAHVFAPQTAALLVVVVTLSMVATPLLLLAHDKFVAPRLQGEKKRRPDDHIEAQDNPIVIAGFGRFGQIIGRLLAANKIGVTVLDHDPDQIELLRKFGFKVFYGDATRVDLLVAAGIEKAKALVIAIDNVDDSLALVDAVRLRLPELTILARARNVTHYYELMKRGVTLIERETFAAALLLGEQTLQQVGFSAERAQRAAGIFGRHNLKTLLEVAPHFQDQQKVMSLTRQAREELEDMFESDAAAFAAAEAENGRSD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP033019_4	4.1\|6250951\|31\|CP033019\|CRISPRCasFinder	6250951-6250981	31	NZ_AP018687	Vibrio rumoiensis strain FERM P-14531 plasmid 1, complete sequence	156638-156668	7	0.774
CP033019_4	4.1\|6250951\|31\|CP033019\|CRISPRCasFinder	6250951-6250981	31	AP014939	Citrobacter freundii plasmid pKHM-1 DNA, complete sequence, strain: KHM 243	31178-31208	7	0.774
CP033019_4	4.1\|6250951\|31\|CP033019\|CRISPRCasFinder	6250951-6250981	31	NZ_LN681228	Xenorhabdus nematophila AN6/1 plasmid II, complete sequence	2810-2840	7	0.774

1. spacer 4.1|6250951|31|CP033019|CRISPRCasFinder matches to NZ_AP018687 (Vibrio rumoiensis strain FERM P-14531 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.774

agcaagcggccaatatctgtaggtgggatta	CRISPR spacer
agcaagcggccaatctctggaggggtgggga	Protospacer
************** **** *** * *.  *

2. spacer 4.1|6250951|31|CP033019|CRISPRCasFinder matches to AP014939 (Citrobacter freundii plasmid pKHM-1 DNA, complete sequence, strain: KHM 243) position: , mismatch: 7, identity: 0.774

agcaagcggccaatatctgtaggtgggatta	CRISPR spacer
agcaagcggccaatctctggaggggtgggga	Protospacer
************** **** *** * *.  *

3. spacer 4.1|6250951|31|CP033019|CRISPRCasFinder matches to NZ_LN681228 (Xenorhabdus nematophila AN6/1 plasmid II, complete sequence) position: , mismatch: 7, identity: 0.774

agcaagcggccaatatctgtaggtgggatta	CRISPR spacer
agcaagcggccaatctctggaggggtgggga	Protospacer
************** **** *** * *.  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1033086 : 1062753

Burkholderia_phage(33.33%)

head,portal,tail,terminase,integrase,plate,capsid

attL 1029725:1029755|attR 1065200:1065230

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1029725:1029755	attL	NA	NA	NA	NA
AYM75172.1\|1033086_1034094_+	2-hydroxyacid dehydrogenase	M1HUW8	Acanthocystis_turfacea_Chlorella_virus	2.7e-64	45.1
AYM75173.1\|1034196_1035342_-\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	5.2e-136	62.6
AYM75174.1\|1035221_1035500_-	excisionase	NA	NA	NA	NA
AYM75175.1\|1035648_1035888_-	hypothetical protein	NA	NA	NA	NA
AYM75176.1\|1036030_1037869_-	replication endonuclease	A4JWW0	Burkholderia_virus	1.9e-108	42.4
AYM75177.1\|1037858_1038212_-	hypothetical protein	NA	NA	NA	NA
AYM75178.1\|1038313_1038715_-	hypothetical protein	NA	NA	NA	NA
AYM75179.1\|1038837_1039101_-	transcriptional regulator	A4JWR6	Burkholderia_virus	2.0e-14	45.7
AYM75180.1\|1039097_1039286_-	hypothetical protein	NA	NA	NA	NA
AYM75181.1\|1039333_1039537_-	hypothetical protein	E5E3U0	Burkholderia_phage	9.2e-12	61.0
AYM75182.1\|1039832_1040276_+	XRE family transcriptional regulator	K4NXA8	Burkholderia_phage	2.8e-29	50.7
AYM75183.1\|1040272_1040680_+	hypothetical protein	NA	NA	NA	NA
AYM75184.1\|1041445_1042690_-	phage late control D family protein	K4PAY4	Burkholderia_phage	8.0e-82	48.6
AYM75185.1\|1042686_1043295_-	oxidoreductase	A0A2H4JG54	uncultured_Caudovirales_phage	6.5e-37	58.3
AYM75186.1\|1043309_1046186_-\|tail	phage tail protein	A4PE52	Ralstonia_virus	2.2e-231	49.6
AYM75187.1\|1046213_1046327_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
AYM75188.1\|1046335_1046644_-\|tail	phage tail assembly protein	A4PE51	Ralstonia_virus	4.1e-19	50.5
AYM75189.1\|1046684_1047194_-\|tail	phage major tail tube protein	E5E3U9	Burkholderia_phage	8.7e-51	56.2
AYM75190.1\|1047262_1048438_-\|tail	phage tail sheath protein	E5FFG9	Burkholderia_phage	5.3e-152	68.5
AYM75191.1\|1048475_1048958_-	hypothetical protein	NA	NA	NA	NA
AYM75192.1\|1048960_1050520_-	hypothetical protein	A0A0M3ULH6	Salmonella_phage	7.3e-56	63.9
AYM79406.1\|1050516_1051116_-\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	1.9e-65	58.4
AYM75193.1\|1051129_1052041_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	2.1e-79	55.2
AYM75194.1\|1052037_1052382_-	oxidoreductase	E5E3V5	Burkholderia_phage	5.5e-25	53.0
AYM75195.1\|1052378_1053041_-\|plate	phage baseplate assembly protein V	A0A2H4JFJ8	uncultured_Caudovirales_phage	4.9e-30	40.4
AYM79407.1\|1053917_1054385_-	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	8.9e-34	50.7
AYM75196.1\|1054381_1054870_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	6.6e-32	50.6
AYM79408.1\|1054853_1055342_-	lysozyme	NA	NA	NA	NA
AYM75197.1\|1055362_1055923_-	hypothetical protein	G0YQI3	Erwinia_phage	3.2e-46	54.0
AYM75198.1\|1055922_1056294_-	hypothetical protein	NA	NA	NA	NA
AYM75199.1\|1056358_1056568_-\|tail	phage tail protein	D5LGY2	Escherichia_phage	1.2e-06	46.3
AYM75200.1\|1056567_1057071_-\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	4.0e-32	49.7
AYM75201.1\|1057166_1057883_-\|integrase	integrase	A4PE31	Ralstonia_virus	5.0e-44	46.6
AYM75202.1\|1057882_1058902_-\|capsid	phage major capsid protein, P2 family	A4PE30	Ralstonia_virus	2.2e-117	63.1
AYM75203.1\|1058949_1059771_-\|capsid	phage capsid protein	E5FFI7	Burkholderia_phage	2.6e-57	48.2
AYM79409.1\|1059874_1061686_+\|terminase	terminase	A4JWQ1	Burkholderia_virus	1.7e-234	66.7
AYM75204.1\|1061748_1062753_+\|portal	phage portal protein	E5E3X1	Burkholderia_phage	3.0e-127	65.7
1065200:1065230	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1404552 : 1437701

Burkholderia_phage(34.48%)

head,portal,tail,terminase,integrase,plate,capsid

attL 1406740:1406757|attR 1437921:1437938

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM75463.1\|1404552_1405797_+	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	8.4e-55	34.4
AYM75464.1\|1405761_1405941_-	MerR family transcriptional regulator	NA	NA	NA	NA
AYM75465.1\|1405937_1406642_-	hypothetical protein	NA	NA	NA	NA
AYM75466.1\|1406679_1406889_-	hypothetical protein	NA	NA	NA	NA
1406740:1406757	attL	NA	NA	NA	NA
AYM79433.1\|1406892_1407093_-	hypothetical protein	NA	NA	NA	NA
AYM75467.1\|1407182_1407413_-	hypothetical protein	NA	NA	NA	NA
AYM75468.1\|1407555_1409394_-	replication endonuclease	A4JWW0	Burkholderia_virus	1.4e-106	44.2
AYM75469.1\|1409383_1409761_-	hypothetical protein	NA	NA	NA	NA
AYM75470.1\|1409862_1410282_-	hypothetical protein	NA	NA	NA	NA
AYM75471.1\|1410403_1410667_-	transcriptional regulator	A4JWR6	Burkholderia_virus	1.5e-14	46.9
AYM75472.1\|1410663_1410852_-	hypothetical protein	E5E3T9	Burkholderia_phage	3.0e-09	60.3
AYM75473.1\|1410900_1411098_-	hypothetical protein	E5E3U0	Burkholderia_phage	9.9e-11	60.4
AYM75474.1\|1411108_1411312_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
AYM75475.1\|1411385_1411829_+	XRE family transcriptional regulator	K4NXA8	Burkholderia_phage	2.2e-26	45.3
AYM75476.1\|1411975_1413100_+	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	2.0e-15	26.7
AYM75477.1\|1413092_1413755_+	hypothetical protein	NA	NA	NA	NA
AYM75478.1\|1413812_1415045_-	phage late control D family protein	K4PAY4	Burkholderia_phage	1.2e-82	48.9
AYM75479.1\|1415041_1415650_-	oxidoreductase	Q9ZXJ9	Pseudomonas_virus	1.5e-36	56.7
AYM75480.1\|1415665_1418518_-\|tail	phage tail protein	A4PE52	Ralstonia_virus	3.3e-224	48.7
AYM75481.1\|1418545_1418659_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
AYM75482.1\|1418667_1418976_-\|tail	phage tail assembly protein	A4PE51	Ralstonia_virus	3.1e-19	52.1
AYM75483.1\|1419015_1419525_-\|tail	phage major tail tube protein	E5E3U9	Burkholderia_phage	8.7e-51	55.0
AYM75484.1\|1419581_1420757_-\|tail	phage tail sheath protein	A0A2H4JCP8	uncultured_Caudovirales_phage	4.1e-152	67.8
AYM75485.1\|1420792_1421275_-	hypothetical protein	NA	NA	NA	NA
AYM75486.1\|1421277_1422837_-	hypothetical protein	A0A0M3ULH6	Salmonella_phage	1.5e-53	60.8
AYM79434.1\|1422833_1423433_-\|tail	phage tail protein I	A0A2H4JAU2	uncultured_Caudovirales_phage	8.4e-61	64.9
AYM75487.1\|1423446_1424358_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	5.5e-80	57.0
AYM75488.1\|1424354_1424699_-	oxidoreductase	E5E3V5	Burkholderia_phage	3.6e-24	52.1
AYM75489.1\|1424695_1425340_-\|plate	phage baseplate assembly protein V	A0A077K9S0	Ralstonia_phage	4.5e-28	40.9
AYM75490.1\|1425570_1426686_-	DUF2806 domain-containing protein	NA	NA	NA	NA
AYM75491.1\|1426793_1427261_-	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	1.0e-34	52.6
AYM75492.1\|1427257_1427746_-\|tail	phage tail protein	Q9ZXL3	Pseudomonas_virus	6.0e-33	45.6
AYM79435.1\|1427729_1428218_-	lysozyme	NA	NA	NA	NA
AYM75493.1\|1428238_1428799_-	hypothetical protein	G0YQI3	Erwinia_phage	4.2e-46	54.0
AYM75494.1\|1428798_1429170_-	hypothetical protein	NA	NA	NA	NA
AYM75495.1\|1429235_1429451_-\|tail	phage tail protein	D5LGY2	Escherichia_phage	2.1e-06	45.1
AYM75496.1\|1429450_1429954_-\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	3.1e-32	50.3
AYM79436.1\|1430048_1430765_-\|integrase	integrase	E5FFI5	Burkholderia_phage	2.3e-41	45.4
AYM75497.1\|1430764_1431784_-\|capsid	phage major capsid protein, P2 family	A4PE30	Ralstonia_virus	1.7e-117	62.6
AYM75498.1\|1431831_1432620_-\|capsid	phage capsid protein	E5FFI7	Burkholderia_phage	7.4e-57	47.3
AYM79437.1\|1432756_1434568_+\|terminase	terminase	A4JWQ1	Burkholderia_virus	7.7e-235	66.8
AYM75499.1\|1434483_1435620_+\|portal	phage portal protein	K4NZV0	Burkholderia_phage	3.8e-131	62.1
AYM75500.1\|1435616_1435832_+	hypothetical protein	NA	NA	NA	NA
AYM75501.1\|1437017_1437701_+	SOS response-associated peptidase	A0A218MNF5	uncultured_virus	1.3e-38	44.8
1437921:1437938	attR	NA	NA	NA	NA

DBSCAN-SWA_3

3259972 : 3267311

Pseudomonas_phage(83.33%)

coat,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM76909.1\|3259972_3261307_-\|coat	P22 coat - protein 5 family protein	W6EBZ8	Rhizobium_phage	1.6e-88	49.6
AYM76910.1\|3261463_3262261_-	hypothetical protein	A0A0S2SY92	Pseudomonas_phage	1.8e-47	50.9
AYM76911.1\|3262445_3262715_-	hypothetical protein	NA	NA	NA	NA
AYM76912.1\|3263491_3264853_-	DUF4055 domain-containing protein	A0A0H5AWC7	Pseudomonas_phage	7.4e-97	45.2
AYM76913.1\|3264867_3266193_-\|terminase	terminase	A0A1B0VP58	Pseudomonas_phage	8.6e-183	71.6
AYM76914.1\|3266161_3266638_-	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	4.6e-46	61.4
AYM76915.1\|3266669_3267311_-	hypothetical protein	A0A125RNL5	Pseudomonas_phage	6.6e-72	63.9

DBSCAN-SWA_4

3288592 : 3302213

Pseudomonas_phage(36.36%)

integrase

attL 3299402:3299417|attR 3306519:3306534

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM76944.1\|3288592_3289738_+	recombinase RecT	A0A0F6TJP0	Escherichia_coli_O157_typing_phage	5.9e-71	58.4
AYM76945.1\|3289734_3290382_+	hypothetical protein	F8TUK8	EBPR_podovirus	5.5e-26	38.7
AYM76946.1\|3290378_3291650_+	hypothetical protein	F8TUK9	EBPR_podovirus	1.2e-16	37.9
AYM79605.1\|3291969_3292392_+	hypothetical protein	NA	NA	NA	NA
AYM76947.1\|3292388_3292637_+	hypothetical protein	NA	NA	NA	NA
AYM76948.1\|3292633_3293269_+	hypothetical protein	A0A076G7C3	Sinorhizobium_phage	4.0e-37	40.3
AYM76949.1\|3293297_3293711_+	hypothetical protein	K4NZ61	Pseudomonas_phage	1.9e-11	34.6
AYM76950.1\|3295021_3295360_+	hypothetical protein	NA	NA	NA	NA
AYM76951.1\|3295486_3295723_-	hypothetical protein	NA	NA	NA	NA
AYM76952.1\|3295810_3296527_+	hypothetical protein	A0A0U1SZL2	Pseudomonas_phage	7.2e-27	37.6
AYM76953.1\|3296532_3296895_+	hypothetical protein	NA	NA	NA	NA
AYM76954.1\|3296891_3298646_+	DEAD/DEAH box helicase	A0A2K8IBK8	Pseudomonas_phage	9.6e-198	59.7
AYM76955.1\|3298774_3299095_+	hypothetical protein	Q7Y3W7	Yersinia_phage	3.6e-10	33.3
AYM76956.1\|3299091_3299334_+	hypothetical protein	NA	NA	NA	NA
3299402:3299417	attL	NA	NA	NA	NA
AYM76957.1\|3299607_3300612_+\|integrase	site-specific integrase	A0A0U4IBS1	Pseudomonas_phage	7.6e-06	35.8
AYM76958.1\|3300856_3301573_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	3.7e-39	42.7
AYM76959.1\|3301775_3302213_-	ribonuclease HI	A0A1P8DJF0	Virus_Rctr71	7.8e-32	48.2
3306519:3306534	attR	NA	NA	NA	NA

DBSCAN-SWA_5

5382518 : 5436512

Burkholderia_phage(26.47%)

head,portal,tail,terminase,integrase,plate,capsid,tRNA

attL 5383292:5383338|attR 5416716:5416762

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM78578.1\|5382518_5383199_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
5383292:5383338	attL	NA	NA	NA	NA
AYM78579.1\|5383358_5383571_+	hypothetical protein	NA	NA	NA	NA
AYM78580.1\|5383672_5384713_+	hypothetical protein	NA	NA	NA	NA
AYM79799.1\|5384678_5385332_+	NADAR family protein	E3PZ47	Roseovarius_sp._217_phage	2.8e-09	34.9
AYM78581.1\|5385744_5385960_-	hypothetical protein	NA	NA	NA	NA
AYM78582.1\|5385956_5387021_-\|portal	phage portal protein	E5E3X1	Burkholderia_phage	1.4e-127	64.2
AYM79800.1\|5387017_5388829_-\|terminase	terminase	A4JWQ1	Burkholderia_virus	2.7e-235	66.8
AYM78583.1\|5388965_5389754_+\|capsid	phage capsid protein	E5FFI7	Burkholderia_phage	4.3e-57	49.1
AYM78584.1\|5389801_5390821_+\|capsid	phage major capsid protein, P2 family	A4PE30	Ralstonia_virus	1.1e-118	63.2
AYM78585.1\|5390820_5391537_+\|integrase	integrase	A4JWP8	Burkholderia_virus	9.4e-43	45.5
AYM78586.1\|5391644_5392148_+\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	4.0e-32	49.7
AYM78587.1\|5392147_5392363_+\|tail	phage tail protein	D5LGY2	Escherichia_phage	1.2e-06	47.8
AYM78588.1\|5392427_5392799_+	hypothetical protein	NA	NA	NA	NA
AYM78589.1\|5392798_5393359_+	hypothetical protein	A0A0B5KTG2	Acinetobacter_phage	2.5e-43	50.8
AYM78590.1\|5393355_5393868_+	lysozyme	NA	NA	NA	NA
AYM78591.1\|5393851_5394340_+\|tail	phage tail protein	E5FFH7	Burkholderia_phage	1.5e-31	52.7
AYM78592.1\|5394336_5394804_+	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	1.5e-33	50.7
AYM79801.1\|5396269_5396932_+\|plate	phage baseplate assembly protein V	A0A2H4JFJ8	uncultured_Caudovirales_phage	1.0e-27	38.2
AYM78593.1\|5396928_5397273_+	oxidoreductase	E5E3V5	Burkholderia_phage	1.2e-24	52.1
AYM78594.1\|5397269_5398181_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	2.7e-79	55.5
AYM79802.1\|5398194_5398794_+\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	1.6e-67	60.9
AYM78595.1\|5400352_5400835_+	hypothetical protein	NA	NA	NA	NA
AYM78596.1\|5400868_5402044_+\|tail	phage tail sheath protein	A0A2H4JCP8	uncultured_Caudovirales_phage	4.2e-149	67.0
AYM78597.1\|5402097_5402607_+\|tail	phage major tail tube protein	E5E3U9	Burkholderia_phage	2.5e-50	55.6
AYM78598.1\|5402641_5402950_+\|tail	phage tail assembly protein	A4PE51	Ralstonia_virus	3.1e-19	52.1
AYM78599.1\|5402958_5403072_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
AYM78600.1\|5403102_5405952_+\|tail	phage tail protein	A4PE52	Ralstonia_virus	6.9e-222	48.3
AYM78601.1\|5405968_5406577_+	oxidoreductase	A0A2H4JG54	uncultured_Caudovirales_phage	1.1e-36	57.6
AYM78602.1\|5406573_5407845_+	phage late control D family protein	K4PAY4	Burkholderia_phage	2.2e-82	48.9
AYM78603.1\|5407938_5408187_-	hypothetical protein	NA	NA	NA	NA
AYM78604.1\|5408393_5408723_-	DUF1496 domain-containing protein	NA	NA	NA	NA
AYM78605.1\|5408667_5409114_-	XRE family transcriptional regulator	K4NXA8	Burkholderia_phage	5.0e-26	44.3
AYM78606.1\|5409426_5409624_+	hypothetical protein	E5E3U0	Burkholderia_phage	2.3e-12	52.3
AYM78607.1\|5409663_5409858_+	hypothetical protein	NA	NA	NA	NA
AYM78608.1\|5409854_5410118_+	transcriptional regulator	A4JWR6	Burkholderia_virus	2.0e-14	46.9
AYM78609.1\|5410241_5410655_+	hypothetical protein	NA	NA	NA	NA
AYM78610.1\|5410756_5411134_+	hypothetical protein	NA	NA	NA	NA
AYM78611.1\|5411123_5412962_+	replication endonuclease	A4JWW0	Burkholderia_virus	9.0e-106	44.4
AYM78612.1\|5413104_5413344_+	hypothetical protein	NA	NA	NA	NA
AYM79803.1\|5413409_5413955_+	hypothetical protein	NA	NA	NA	NA
AYM78613.1\|5413965_5414190_+	DUF4224 domain-containing protein	NA	NA	NA	NA
AYM78614.1\|5414167_5415199_+\|integrase	integrase	C8CLF4	Xylella_phage	2.3e-58	45.1
AYM78615.1\|5415217_5416375_-	Fic family protein	A0A1V0E025	Clostridioides_phage	4.2e-08	28.2
AYM78616.1\|5417035_5417908_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.2e-28	32.6
5416716:5416762	attR	NA	NA	NA	NA
AYM78617.1\|5417947_5418493_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.9e-52	56.4
AYM78618.1\|5418537_5419431_-	glucose-1-phosphate thymidylyltransferase	K7QKA7	Escherichia_phage	9.4e-101	62.9
AYM78619.1\|5419430_5420510_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.2e-87	48.5
AYM78620.1\|5420780_5422361_-	sel1 repeat family protein	NA	NA	NA	NA
AYM78621.1\|5422357_5424562_-	EAL domain-containing protein	NA	NA	NA	NA
AYM78622.1\|5424567_5426733_-	HDOD domain-containing protein	A0A1V0SGX0	Hokovirus	2.8e-05	29.9
AYM78623.1\|5426924_5428133_-	Bcr/CflA family efflux MFS transporter	NA	NA	NA	NA
AYM78624.1\|5428404_5429574_-	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
AYM78625.1\|5429824_5430439_-	2-hydroxychromene-2-carboxylate isomerase	NA	NA	NA	NA
AYM78626.1\|5430449_5430887_-	CopD family protein	NA	NA	NA	NA
AYM79804.1\|5430957_5432229_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	7.2e-86	44.6
AYM78627.1\|5432252_5433269_-	DNA polymerase III subunit delta	NA	NA	NA	NA
AYM78628.1\|5433279_5433870_-	hypothetical protein	NA	NA	NA	NA
AYM78629.1\|5433872_5436512_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	3.0e-171	39.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP033019

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection