CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033043	Bacillus litoralis strain Bac94 chromosome, complete genome	6 crisprs	NA	1	2	0	0

Cas Category Instructions

Results visualization

1. CP033043

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CRISPR-Cas detection and classification

Crispr_ID: CP033043_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033043_1

354905-354991

Orphan

Consensus_repeat	Method
GTTAAGCTTGTTATATTGTTGTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033043_1

>merge|CP033043|1|354905-354991|CRISPRCasFinder
GTTAAGCTTGTTATATTGTTGTTCTACGTCTTCGTTTATTTTATCTTGAACAAGTAACTTATTGTTAAGCTTGTTATAATGTTGTTC

>CP033043|1|1|354905-354991|CRISPRCasFinder
GTTAAGCTTGTTATATTGTTGTTC	TACGTCTTCGTTTATTTTATCTTGAACAAGTAACTTATT
GTTAAGCTTGTTATAATGTTGTTC

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Crispr_ID: CP033043_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033043_2

413898-414243

Orphan

Consensus_repeat	Method
AGATGTACTTCATCAAGGNNATGAAGACNATTA	CRT

6 spacers

The CRISPR arrays of CP033043_2

>merge|CP033043|2|413898-414243|CRT
AGATGTACTTCATCAAGGGAATGAAGACTATTACGAGTACGAAATGTATGGGAGATGTACTTCATCAAGGTGATGAAGACTATTAGGAGTGAGAAATGCTTGGGAGATGTACTTCATCAAGGGAATGAAGACCAATACGAGTACAAAATGCTTGAGAGATGTACTTCATCAAGGTGATGAAGACTATTAGGAGTGAGAAATGCTTGGGAGATGTACTTCATCAAGGTGATGAAGACCATTACAAGCACGAAATGTTTAAGAGATGTACTTCATCAAGGGAATGAAGACCAATACGAGTGCGAAATGCGATGAAAGATGTACTTCATCAAGATGATGAAGACCATTT

>CP033043|2|1|413898-414243|CRT
AGATGTACTTCATCAAGGGAATGAAGACTATTA	CGAGTACGAAATGTATGGG
AGATGTACTTCATCAAGGTGATGAAGACTATTA	GGAGTGAGAAATGCTTGGG
AGATGTACTTCATCAAGGGAATGAAGACCAATA	CGAGTACAAAATGCTTGAG
AGATGTACTTCATCAAGGTGATGAAGACTATTA	GGAGTGAGAAATGCTTGGG
AGATGTACTTCATCAAGGTGATGAAGACCATTA	CAAGCACGAAATGTTTAAG
AGATGTACTTCATCAAGGGAATGAAGACCAATA	CGAGTGCGAAATGCGATGAA
AGATGTACTTCATCAAGATGATGAAGACCATTT

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Crispr_ID: CP033043_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033043_3

3063567-3063752

Orphan

Consensus_repeat	Method
TTAACCGGAAAAACTCCGCTTAT	CRISPRCasFinder

3 spacers

The CRISPR arrays of CP033043_3

>merge|CP033043|3|3063567-3063752|CRISPRCasFinder
ATAAGCTTAGAAACTCCTCTTATTGAGGAAATAGCACAAAAAATAGATTAAATAGACGGAAAGATTCCGCCTATTTAATCGAAAAAGATGAAAATGGACCATTTTACTTTACTTAACCGGAAAAACTCCGCTTATATCCCTCAACCGAGTTCTATTCTTCAGTTTAACCGGAAGAACTCCGCTTAT

>CP033043|3|2|3063567-3063752|CRISPRCasFinder
ATAAGCTTAGAAACTCCTCTTAT	TGAGGAAATAGCACAAAAAATAGATTAA
ATAGACGGAAAGATTCCGCCTAT	TTAATCGAAAAAGATGAAAATGGACCATTTTACTTTAC
TTAACCGGAAAAACTCCGCTTAT	ATCCCTCAACCGAGTTCTATTCTTCAGT
TTAACCGGAAGAACTCCGCTTAT

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Crispr_ID: CP033043_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033043_4

4236913-4236986

Orphan

Consensus_repeat	Method
GATGAACGACAAACCCACTGGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033043_4

>merge|CP033043|4|4236913-4236986|CRISPRCasFinder
GATGAACGACAAACCCACTGGGAAAAAGAGCAGAAAGTCGTTCATAAACCGGATGAACGACAAACCCAATGGGA

>CP033043|4|3|4236913-4236986|CRISPRCasFinder
GATGAACGACAAACCCACTGGGA	AAAAGAGCAGAAAGTCGTTCATAAACCG
GATGAACGACAAACCCAATGGGA

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Crispr_ID: CP033043_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033043_5

4792637-4792711

Orphan

Consensus_repeat	Method
AATCGGGACAAATCCATGAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033043_5

>merge|CP033043|5|4792637-4792711|CRISPRCasFinder
AATCGGGACAAATCCATGAGAAAAGAGTTGTAAAGAGTCTCGATACTAAGATAATCGGGACAAATCCGTGAGAAA

>CP033043|5|4|4792637-4792711|CRISPRCasFinder
AATCGGGACAAATCCATGAGAAA	AGAGTTGTAAAGAGTCTCGATACTAAGAT
AATCGGGACAAATCCGTGAGAAA

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Crispr_ID: CP033043_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033043_6

4971785-4972334

Orphan

Consensus_repeat	Method
NTGNNNNTCATAAGNNGGATGAANNNCAAAA	CRT

10 spacers

The CRISPR arrays of CP033043_6

>merge|CP033043|6|4971785-4972334|CRT
GTGTCGTTCGTAAGGGGATGAACGACAAAAGGTTGGTGGAAAGAGCGGGCGGTGTCGTTCATAAGAGGGATGAACGACAAAAGGTTGGTGGAAAGATCGGACGGTGTCTTTCATAAGGGTGATGAACGACAAAAGGTTGGTGGAAAGAGCGGGCGGTGTCGTTCATAAGAGGGATGAATGACAAAAGGGTGATTGGAAACCTGCGCAAATGTCTTCATAAGGTGGATGAAGAACAAAATCAAGAAGGAAACCTGCGCAAATGGTCTTCATAAGGTGGATGAAGAACAAAATCAAGGAGGAAACCTGCGCAAATGGTCTTCATAAGGTGGATGAAGACCAAAATCCAGAAGGAAACCGTTCCAAATGGTCATCATAAGACGGATGGAGACCAAAATCAAGAAGGAAACCGTTCCAAATGGTCATCATATGACGGATGAAGACCAAAATCCAGACATAACCCTGCGCAAATGGTCATCATAAGACGGATGAAGACCAAAACCCAGAAGGAAACCGTTCCAAATGGTCATCATCAGGCGAATGAAGACCAAAA

>CP033043|6|2|4971785-4972334|CRT
GTGTCGTTCGTAAGGGGATGAACGACAAAA	GGTTGGTGGAAAGAGCGGGCGG
TGTCGTTCATAAGAGGGATGAACGACAAAA	GGTTGGTGGAAAGATCGGACGG
TGTCTTTCATAAGGGTGATGAACGACAAAA	GGTTGGTGGAAAGAGCGGGCGG
TGTCGTTCATAAGAGGGATGAATGACAAAA	GGGTGATTGGAAACCTGCGCAA
ATGTCTTCATAAGGTGGATGAAGAACAAAA	TCAAGAAGGAAACCTGCGCAAA
TGGTCTTCATAAGGTGGATGAAGAACAAAA	TCAAGGAGGAAACCTGCGCAAA
TGGTCTTCATAAGGTGGATGAAGACCAAAA	TCCAGAAGGAAACCGTTCCAAA
TGGTCATCATAAGACGGATGGAGACCAAAA	TCAAGAAGGAAACCGTTCCAAA
TGGTCATCATATGACGGATGAAGACCAAAA	TCCAGACATAACCCTGCGCAAA
TGGTCATCATAAGACGGATGAAGACCAAAA	CCCAGAAGGAAACCGTTCCAAA
TGGTCATCATCAGGCGAATGAAGACCAAAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP033043_3	3.1\|3063590\|28\|CP033043\|CRISPRCasFinder	3063590-3063617	28	CP033043.1	1370212-1370239	2	0.929
CP033043_3	3.1\|3063590\|28\|CP033043\|CRISPRCasFinder	3063590-3063617	28	CP033043.1	2385419-2385446	2	0.929
CP033043_3	3.1\|3063590\|28\|CP033043\|CRISPRCasFinder	3063590-3063617	28	CP033043.1	2893450-2893477	2	0.929
CP033043_3	3.1\|3063590\|28\|CP033043\|CRISPRCasFinder	3063590-3063617	28	CP033043.1	2997792-2997819	2	0.929
CP033043_3	3.1\|3063590\|28\|CP033043\|CRISPRCasFinder	3063590-3063617	28	CP033043.1	3144905-3144932	2	0.929
CP033043_3	3.1\|3063590\|28\|CP033043\|CRISPRCasFinder	3063590-3063617	28	CP033043.1	3973758-3973785	2	0.929
CP033043_3	3.1\|3063590\|28\|CP033043\|CRISPRCasFinder	3063590-3063617	28	CP033043.1	4606068-4606095	2	0.929
CP033043_3	3.1\|3063590\|28\|CP033043\|CRISPRCasFinder	3063590-3063617	28	CP033043.1	4979975-4980002	2	0.929

1. spacer 3.1|3063590|28|CP033043|CRISPRCasFinder matches to position: 1370212-1370239, mismatch: 2, identity: 0.929

tgaggaaatagcacaaaaaatagattaa	CRISPR spacer
tgaggaaatagcataaaaaattgattaa	Protospacer
*************.******* ******

2. spacer 3.1|3063590|28|CP033043|CRISPRCasFinder matches to position: 2385419-2385446, mismatch: 2, identity: 0.929

tgaggaaatagcacaaaaaatagattaa	CRISPR spacer
tgaggaggtagcacaaaaaatagattaa	Protospacer
******..********************

3. spacer 3.1|3063590|28|CP033043|CRISPRCasFinder matches to position: 2893450-2893477, mismatch: 2, identity: 0.929

tgaggaaatagcacaaaaaatagattaa	CRISPR spacer
tgaggaaatagtacgaaaaatagattaa	Protospacer
***********.**.*************

4. spacer 3.1|3063590|28|CP033043|CRISPRCasFinder matches to position: 2997792-2997819, mismatch: 2, identity: 0.929

tgaggaaatagcacaaaaaatagattaa	CRISPR spacer
tgaggaaatagcacgaaaaattgattaa	Protospacer
**************.****** ******

5. spacer 3.1|3063590|28|CP033043|CRISPRCasFinder matches to position: 3144905-3144932, mismatch: 2, identity: 0.929

tgaggaaatagcacaaaaaatagattaa	CRISPR spacer
tgaagaaatggcacaaaaaatagattaa	Protospacer
***.*****.******************

6. spacer 3.1|3063590|28|CP033043|CRISPRCasFinder matches to position: 3973758-3973785, mismatch: 2, identity: 0.929

tgaggaaatagcacaaaaaatagattaa	CRISPR spacer
tgaggaaatagaacgaaaaatagattaa	Protospacer
*********** **.*************

7. spacer 3.1|3063590|28|CP033043|CRISPRCasFinder matches to position: 4606068-4606095, mismatch: 2, identity: 0.929

tgaggaaatagcacaaaaaatagattaa	CRISPR spacer
tgaggaattagcacgaaaaatagattaa	Protospacer
******* ******.*************

8. spacer 3.1|3063590|28|CP033043|CRISPRCasFinder matches to position: 4979975-4980002, mismatch: 2, identity: 0.929

tgaggaaatagcacaaaaaatagattaa	CRISPR spacer
tgaggaaatagcacaaaaaaaagatgaa	Protospacer
******************** **** **

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP033043_6	6.8\|4972179\|22\|CP033043\|CRT	4972179-4972200	22	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	1155876-1155897	1	0.955
CP033043_3	3.1\|3063590\|28\|CP033043\|CRISPRCasFinder	3063590-3063617	28	NZ_CP040940	Cetia pacifica strain TB6 plasmid unnamed1, complete sequence	87370-87397	4	0.857
CP033043_3	3.1\|3063590\|28\|CP033043\|CRISPRCasFinder	3063590-3063617	28	NZ_CP033813	Staphylococcus haemolyticus strain FDAARGOS_517 plasmid unnamed2	13820-13847	5	0.821
CP033043_3	3.1\|3063590\|28\|CP033043\|CRISPRCasFinder	3063590-3063617	28	NZ_CP023496	Staphylococcus simulans strain FDAARGOS_383 plasmid unnamed, complete sequence	43102-43129	5	0.821
CP033043_3	3.1\|3063590\|28\|CP033043\|CRISPRCasFinder	3063590-3063617	28	NC_014502	Gloeothece verrucosa PCC 7822 plasmid Cy782203, complete sequence	70971-70998	6	0.786
CP033043_3	3.1\|3063590\|28\|CP033043\|CRISPRCasFinder	3063590-3063617	28	HM029250	Lactococcus phage 949, complete genome	17196-17223	6	0.786
CP033043_3	3.1\|3063590\|28\|CP033043\|CRISPRCasFinder	3063590-3063617	28	CP020755	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence	76749-76776	6	0.786

1. spacer 6.8|4972179|22|CP033043|CRT matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 1, identity: 0.955

tcaagaaggaaaccgttccaaa	CRISPR spacer
tcaagaaggaaaccgatccaaa	Protospacer
*************** ******

2. spacer 3.1|3063590|28|CP033043|CRISPRCasFinder matches to NZ_CP040940 (Cetia pacifica strain TB6 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.857

tgaggaaatagcacaaaaaatagattaa	CRISPR spacer
ttatgaaatagcgcaaaaaatagatgaa	Protospacer
* * ********.************ **

3. spacer 3.1|3063590|28|CP033043|CRISPRCasFinder matches to NZ_CP033813 (Staphylococcus haemolyticus strain FDAARGOS_517 plasmid unnamed2) position: , mismatch: 5, identity: 0.821

tgaggaaatagcacaaaaaatagattaa	CRISPR spacer
tgagaaaatagaacaaaaaatagagtct	Protospacer
****.****** ************ *

4. spacer 3.1|3063590|28|CP033043|CRISPRCasFinder matches to NZ_CP023496 (Staphylococcus simulans strain FDAARGOS_383 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

tgaggaaatagcacaaaaaatagattaa	CRISPR spacer
tgagaaaatagaacaaaaaatagagtct	Protospacer
****.****** ************ *

5. spacer 3.1|3063590|28|CP033043|CRISPRCasFinder matches to NC_014502 (Gloeothece verrucosa PCC 7822 plasmid Cy782203, complete sequence) position: , mismatch: 6, identity: 0.786

tgaggaaatagcacaaaaaatagattaa	CRISPR spacer
ccaggaaatagcacaaaaattaaatttg	Protospacer
. ***************** **.*** .

6. spacer 3.1|3063590|28|CP033043|CRISPRCasFinder matches to HM029250 (Lactococcus phage 949, complete genome) position: , mismatch: 6, identity: 0.786

tgaggaaatagcacaaaaaatagattaa	CRISPR spacer
aaaacaaatagcaaaaaaaatatattaa	Protospacer
 .*. ******** ******** *****

7. spacer 3.1|3063590|28|CP033043|CRISPRCasFinder matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 6, identity: 0.786

tgaggaaatagcacaaaaaatagattaa	CRISPR spacer
agaggaaaaaacacaaaaaatagaagat	Protospacer
 ******* *.*************  *

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage