CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP033031	Agrobacterium tumefaciens strain 12D1 chromosome circular, complete sequence	0 crisprs	WYL,csa3,cas3,DEDDh	3
CP033033	Agrobacterium tumefaciens strain 12D1 plasmid pTi12D1, complete sequence	0 crisprs	NA	1
CP033032	Agrobacterium tumefaciens strain 12D1 chromosome linear, complete sequence	0 crisprs	DEDDh,csa3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

632710 : 642495

Arthrobacter_phage(20.0%)

capsid,terminase,tail,protease,portal,head

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM80499.1\|632710_633970_+\|terminase	large terminase phage packaging protein	A0A0U4IJ26	Arthrobacter_phage	5.8e-72	42.5
AYM80500.1\|634100_634208_-	hypothetical protein	NA	NA	NA	NA
AYM80501.1\|634415_635054_+	chitinase	R9U4A9	Rhizobium_phage	5.3e-37	43.4
AYM80502.1\|635098_635422_+	stress responsive protein	NA	NA	NA	NA
AYM80503.1\|635677_636844_+\|head,portal	phage head portal protein	W8ECU7	Geobacillus_phage	5.1e-62	37.7
AYM80504.1\|637039_637360_+	hypothetical protein	NA	NA	NA	NA
AYM80505.1\|637388_637997_+\|head,protease	phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.8e-26	40.5
AYM80506.1\|638027_639296_+\|capsid	phage phi-C31 major capsid gp36-like protein	Q3HQT0	Burkholderia_phage	1.5e-75	42.2
AYM80507.1\|639489_640059_+	hypothetical protein	NA	NA	NA	NA
AYM80508.1\|640062_640398_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AYM80509.1\|640394_640790_+	hypothetical protein	NA	NA	NA	NA
AYM80510.1\|640797_641997_-	MFS permease	NA	NA	NA	NA
AYM80511.1\|642087_642495_+\|tail	tail protein	NA	NA	NA	NA

DBSCAN-SWA_2

1348492 : 1357188

uncultured_Mediterranean_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM81189.1\|1348492_1350025_+	long-chain acyl-CoA synthetase	A0A2K9L3I8	Tupanvirus	1.5e-21	23.1
AYM81190.1\|1350008_1351754_+	diaminopimelate decarboxylase	NA	NA	NA	NA
AYM81191.1\|1351778_1352936_-	para-aminobenzoate synthase component I	S4VT78	Pandoravirus	2.0e-42	43.9
AYM81192.1\|1352973_1354104_-\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	6.1e-105	53.3
AYM81193.1\|1354103_1355186_-\|tRNA	S-adenosylmethionine tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
AYM81194.1\|1355506_1356016_-	peptidyl-prolyl cis-trans isomerase B (cyclophilin B)	A0A1B1IVS0	uncultured_Mediterranean_phage	1.4e-45	58.8
AYM81195.1\|1356052_1356622_-	peptidyl-prolyl cis-trans isomerase A (cyclophilin A)	A0A1B1IVS0	uncultured_Mediterranean_phage	2.5e-46	58.5
AYM81196.1\|1356651_1357188_-	phosphopantetheine adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	9.2e-27	39.0

DBSCAN-SWA_3

1373565 : 1381988

uncultured_Mediterranean_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM81213.1\|1373565_1375035_-	lipoprotein	I3PV24	Clostridium_phage	1.0e-11	30.4
AYM81214.1\|1375474_1376128_-	protein-L-isoaspartate O-methyltransferase	A0A1J0MC37	Streptomyces_phage	1.0e-11	35.1
AYM81215.1\|1376124_1376895_-	stationary-phase survival protein	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.1e-23	29.8
AYM81216.1\|1377100_1378384_-\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.3e-98	46.0
AYM81217.1\|1378486_1379290_-	sec-independent protein translocase protein TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	6.8e-42	41.2
AYM81218.1\|1379286_1380024_-	sec-independent protein translocase protein TatB	NA	NA	NA	NA
AYM81219.1\|1380080_1380287_-	sec-independent protein translocase protein TatA	A0A1B1IVR9	uncultured_Mediterranean_phage	2.1e-08	69.8
AYM81220.1\|1380415_1381150_-	segregation and condensation protein B	A0A1B1IVT7	uncultured_Mediterranean_phage	6.5e-39	49.4
AYM81221.1\|1381139_1381988_-	segregation and condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.2e-33	35.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP033033

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

22435 : 83866

Paenibacillus_phage(14.29%)

holin,transposase,integrase

attL 69145:69160|attR 89143:89158

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYM84806.1\|22435_24061_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.5e-51	29.2
AYM84807.1\|24195_25092_-	haloalkane dehalogenase	B9U1C3	Vaccinia_virus	1.3e-28	30.7
AYM84808.1\|25106_25730_-	peroxidase	NA	NA	NA	NA
AYM84809.1\|25869_27075_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
AYM84810.1\|27128_27698_-	peroxidase	NA	NA	NA	NA
AYM84811.1\|27854_28889_-	ribose transport system permease protein	NA	NA	NA	NA
AYM84812.1\|28899_30480_-	ribose transport system ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.4e-09	26.4
AYM84813.1\|30482_31790_-	ribose transport system substrate-binding protein	NA	NA	NA	NA
AYM84814.1\|31922_32753_-	N-acyl homoserine lactone hydrolase	NA	NA	NA	NA
AYM84815.1\|32832_34020_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
AYM84816.1\|34136_35732_-	peptide/nickel transport system substrate-binding protein	NA	NA	NA	NA
AYM84817.1\|35788_37456_-	peptide/nickel transport system ATP-binding protein	G9BWD6	Planktothrix_phage	8.4e-18	28.3
AYM84818.1\|37455_38397_-	peptide/nickel transport system permease protein	NA	NA	NA	NA
AYM84819.1\|38396_39383_-	peptide/nickel transport system permease protein	NA	NA	NA	NA
AYM84820.1\|39379_40867_-	FAD-dependent urate hydroxylase	NA	NA	NA	NA
AYM84821.1\|40877_42104_-	dimethylsulfone monooxygenase	NA	NA	NA	NA
AYM84822.1\|42100_43393_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
AYM84823.1\|43564_44527_+	LysR family transcriptional regulator	NA	NA	NA	NA
AYM84824.1\|45322_46333_+	ATP-binding protein	A0A125SJ49	Acidianus_tailed_spindle_virus	5.6e-17	31.8
AYM84825.1\|46336_48847_+	hypothetical protein	NA	NA	NA	NA
AYM84826.1\|49069_49588_+	sulfonate transport system substrate-binding protein	NA	NA	NA	NA
AYM84827.1\|49600_50044_+	hypothetical protein	NA	NA	NA	NA
AYM84828.1\|50729_51464_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.8e-25	30.3
AYM84829.1\|51460_52825_+	hypothetical protein	NA	NA	NA	NA
AYM84830.1\|52946_53609_+	hypothetical protein	NA	NA	NA	NA
AYM84831.1\|53765_54137_+	hypothetical protein	NA	NA	NA	NA
AYM84832.1\|54250_54973_+	hypothetical protein	NA	NA	NA	NA
AYM84833.1\|55661_55811_+	Dabb family protein	NA	NA	NA	NA
AYM84834.1\|55939_56266_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.6e-18	50.0
AYM84835.1\|56262_56649_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	3.0e-19	44.2
AYM84836.1\|57125_57743_+	outer membrane immunogenic protein	O11861	Bartonella_henselae_phage	1.6e-11	37.6
AYM84837.1\|58454_59207_+	damage-inducible mutagenesis protein	NA	NA	NA	NA
AYM84838.1\|59220_60639_+	DNA polymerase Y family protein	NA	NA	NA	NA
AYM84839.1\|60635_63893_+	error-prone DNA polymerase	A0A0K1Y8T6	Streptomyces_phage	4.4e-87	26.7
AYM84840.1\|64627_65302_-	hypothetical protein	NA	NA	NA	NA
AYM84841.1\|65735_65918_+	helicase	NA	NA	NA	NA
AYM84842.1\|66136_67060_+	hypothetical protein	NA	NA	NA	NA
AYM84843.1\|67020_67617_-	mobile mystery protein B	NA	NA	NA	NA
AYM84844.1\|67613_68075_-	mobile mystery protein A	NA	NA	NA	NA
AYM84845.1\|68463_69066_+	hypothetical protein	NA	NA	NA	NA
AYM84846.1\|69077_69479_+	hypothetical protein	NA	NA	NA	NA
69145:69160	attL	NA	NA	NA	NA
AYM84847.1\|69607_74710_+	SNF2 family helicase	I6WLR1	Burkholderia_virus	0.0e+00	41.8
AYM84848.1\|75075_76815_+	plasmid partitioning protein	NA	NA	NA	NA
AYM84849.1\|76910_77387_+	hypothetical protein	NA	NA	NA	NA
AYM84850.1\|77383_78271_+	hypothetical protein	A0A1X9SH15	Bradyrhizobium_phage	2.1e-20	34.4
AYM84851.1\|78267_78597_+	hypothetical protein	NA	NA	NA	NA
AYM84852.1\|79058_79646_+	hypothetical protein	NA	NA	NA	NA
AYM84853.1\|79984_80809_+	antirestriction protein	A0A1V0EEV1	Caulobacter_phage	6.3e-51	47.5
AYM84854.1\|80694_81690_-\|integrase	integrase	A0A2K9VH72	Gordonia_phage	7.5e-14	28.0
AYM84855.1\|81686_82634_-\|integrase	integrase	NA	NA	NA	NA
AYM84856.1\|82630_83866_-\|integrase	integrase	NA	NA	NA	NA
89143:89158	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP033031

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP033033

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection