CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033087	Commensalibacter sp. AMU001 chromosome, complete genome	0 crisprs	DinG,cas3	0	0	4	0
CP033088	Commensalibacter sp. AMU001 plasmid pCAMU, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

290592 : 296799

uncultured_Mediterranean_phage(83.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYN87652.1\|290592_291417_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.7e-19	26.5
AYN86227.1\|291413_291989_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	5.3e-28	37.5
AYN86228.1\|292058_292595_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
AYN87653.1\|292597_293383_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	6.4e-53	48.0
AYN86229.1\|293382_294663_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.0e-97	50.6
AYN87654.1\|294734_295592_-	ATP-binding protein	NA	NA	NA	NA
AYN86230.1\|295709_296156_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	7.7e-11	46.5
AYN86231.1\|296190_296799_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	4.9e-32	40.7

DBSCAN-SWA_2

300861 : 358462

Sinorhizobium_phage(13.33%)

tail,portal,capsid,terminase,head,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYN87655.1\|300861_302091_+\|tRNA	tyrosine--tRNA ligase	A0A1S6UA79	Serratia_phage	1.2e-66	37.3
AYN86236.1\|302325_304038_+	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	5.2e-39	30.7
AYN86237.1\|304155_305415_+	miniconductance mechanosensitive channel	NA	NA	NA	NA
AYN86238.1\|305486_306290_-	energy transducer TonB	NA	NA	NA	NA
AYN86239.1\|306294_306711_-	TonB system transport protein ExbD	NA	NA	NA	NA
AYN86240.1\|306707_307436_-	tonB-system energizer ExbB	NA	NA	NA	NA
AYN86241.1\|307778_308348_-	heme oxygenase	NA	NA	NA	NA
AYN87656.1\|308615_310910_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
AYN86242.1\|311585_312071_+	50S ribosomal protein L13	NA	NA	NA	NA
AYN86243.1\|312076_312574_+	30S ribosomal protein S9	NA	NA	NA	NA
AYN86244.1\|312686_313598_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
AYN86245.1\|313817_316433_-	hypothetical protein	NA	NA	NA	NA
AYN86246.1\|316844_320894_-	hypothetical protein	NA	NA	NA	NA
AYN86247.1\|321503_322676_+	phosphoserine transaminase	NA	NA	NA	NA
AYN86248.1\|322718_323864_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA
AYN86249.1\|323937_325227_+	adenylosuccinate synthase	A0A2P1EKE7	Megavirus	1.1e-60	34.8
AYN86250.1\|325697_326492_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
AYN86251.1\|326484_326793_+	AzlD family protein	NA	NA	NA	NA
AYN86252.1\|326828_327737_-	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	4.4e-37	32.9
AYN86253.1\|328110_329100_-	RluA family pseudouridine synthase	NA	NA	NA	NA
AYN86254.1\|329115_329493_+	hypothetical protein	NA	NA	NA	NA
AYN86255.1\|330368_331124_+	aspartyl/asparaginyl beta-hydroxylase domain-containing protein	A0A167R0X0	Powai_lake_megavirus	2.7e-24	31.5
AYN86256.1\|331279_332524_+	LarC family nickel insertion protein	NA	NA	NA	NA
AYN86257.1\|332677_333172_+	DUF3576 domain-containing protein	NA	NA	NA	NA
AYN86258.1\|333196_335809_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	4.5e-159	39.4
AYN86259.1\|335808_336525_+	hypothetical protein	NA	NA	NA	NA
AYN86260.1\|336559_337624_+	DNA polymerase III subunit delta	NA	NA	NA	NA
AYN86261.1\|338117_339344_+	DUF4102 domain-containing protein	Q8W6M6	Sinorhizobium_phage	9.3e-107	48.2
AYN86262.1\|339351_339609_-	hypothetical protein	NA	NA	NA	NA
AYN86263.1\|339664_339931_-	hypothetical protein	NA	NA	NA	NA
AYN86264.1\|340001_340295_-	MarR family transcriptional regulator	NA	NA	NA	NA
AYN86265.1\|340427_340784_-	hypothetical protein	NA	NA	NA	NA
AYN86266.1\|341079_341730_+	hypothetical protein	NA	NA	NA	NA
AYN86267.1\|341956_342289_-	XRE family transcriptional regulator	NA	NA	NA	NA
AYN86268.1\|342403_342601_+	hypothetical protein	NA	NA	NA	NA
AYN86269.1\|342607_343156_-	hypothetical protein	NA	NA	NA	NA
AYN87657.1\|343330_343582_+	hypothetical protein	NA	NA	NA	NA
AYN86270.1\|343563_343770_+	hypothetical protein	NA	NA	NA	NA
AYN86271.1\|344101_344989_+	hypothetical protein	NA	NA	NA	NA
AYN86272.1\|344985_345336_+	hypothetical protein	NA	NA	NA	NA
AYN86273.1\|345316_345631_+	hypothetical protein	NA	NA	NA	NA
AYN86274.1\|345632_346046_+	single-stranded DNA-binding protein	A0A0K1LLZ9	Caulobacter_phage	1.1e-27	45.8
AYN86275.1\|346055_346619_+	class I SAM-dependent methyltransferase	D5GVU5	Campylobacter_virus	7.5e-11	26.6
AYN86276.1\|346642_347170_+	hypothetical protein	NA	NA	NA	NA
AYN86277.1\|347635_348154_+	hypothetical protein	NA	NA	NA	NA
AYN86278.1\|348092_350078_+\|terminase	phage terminase large subunit family protein	G8EXZ6	Synechococcus_phage	3.4e-151	47.5
AYN86279.1\|350096_350759_+	hypothetical protein	NA	NA	NA	NA
AYN86280.1\|350759_351026_+\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
AYN86281.1\|351013_352702_+\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	6.8e-84	35.4
AYN86282.1\|352607_353507_+	S49 family peptidase	Q9JMP1	Wolbachia_phage	3.9e-46	46.5
AYN86283.1\|353508_354126_+	hypothetical protein	NA	NA	NA	NA
AYN86284.1\|354125_354536_+\|head	head decoration protein	A0A067ZIL6	Vibrio_phage	1.1e-08	42.5
AYN86285.1\|354546_355644_+\|capsid	major capsid protein	K4ICX6	Providencia_phage	5.5e-34	29.2
AYN86286.1\|355636_355942_+	hypothetical protein	NA	NA	NA	NA
AYN86287.1\|355941_356361_+	hypothetical protein	NA	NA	NA	NA
AYN86288.1\|356335_356779_+	hypothetical protein	NA	NA	NA	NA
AYN86289.1\|356796_356988_+	DUF2635 domain-containing protein	NA	NA	NA	NA
AYN86290.1\|356980_358462_+\|tail	phage tail protein	B5TK67	Pseudomonas_phage	1.6e-57	31.7

DBSCAN-SWA_3

1198004 : 1205611

Synechococcus_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYN86974.1\|1198004_1198667_+	ribonuclease D	K7XYU9	uncultured_Mediterranean_phage	3.2e-13	36.6
AYN86975.1\|1198755_1199748_+	KpsF/GutQ family sugar-phosphate isomerase	A0A0B6VSY5	Edwardsiella_phage	8.8e-23	34.0
AYN87708.1\|1199750_1200518_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
AYN86976.1\|1200523_1201486_+	hypothetical protein	NA	NA	NA	NA
AYN86977.1\|1201518_1202298_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.1e-24	30.1
AYN86978.1\|1202441_1203017_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
AYN86979.1\|1203075_1203342_-	DUF1150 family protein	NA	NA	NA	NA
AYN86980.1\|1203404_1203923_-	heat-shock protein Hsp20	A0A222YXB4	Synechococcus_phage	8.1e-12	34.3
AYN86981.1\|1204135_1204660_+	peptide deformylase	E3SLL2	Synechococcus_phage	5.5e-24	45.2
AYN86982.1\|1204681_1205611_+\|tRNA	methionyl-tRNA formyltransferase	M4QRX9	Synechococcus_phage	8.0e-10	28.6

DBSCAN-SWA_4

1241793 : 1251270

Moumouvirus(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYN87019.1\|1241793_1242909_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.8e-56	40.8
AYN87020.1\|1242928_1243546_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.3e-28	38.8
AYN87021.1\|1243586_1244009_-	nucleoside-diphosphate kinase	A0A2P1ELL9	Moumouvirus	4.6e-13	35.6
AYN87022.1\|1244125_1246015_+	ABC transporter ATP-binding protein	A0A2K9L0W2	Tupanvirus	3.7e-78	34.4
AYN87023.1\|1246081_1247584_-	proline/glycine betaine transporter ProP	Q6JIH2	Burkholderia_virus	3.2e-61	32.4
AYN87024.1\|1247681_1248188_-	hypothetical protein	NA	NA	NA	NA
AYN87025.1\|1248192_1249326_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2P1ELT3	Moumouvirus	8.2e-25	29.2
AYN87712.1\|1249383_1251270_-	polysaccharide biosynthesis protein	L7Y3T9	Megavirus	1.5e-18	27.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage