Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP033104 Pseudomonas sp. LTGT-11-2Z chromosome, complete genome 1 crisprs csa3,DEDDh,WYL,RT,DinG,cas3,PD-DExK 0 2 11 0

Results visualization

1. CP033104
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP033104_2 1669137-1669535 Orphan NA
5 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP033104_3 3.7|1670790|28|CP033104|PILER-CR 1670790-1670817 28 MN961670 Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence 592036-592063 6 0.786
CP033104_3 3.2|1670785|31|CP033104|CRISPRCasFinder 1670785-1670815 31 MN961670 Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence 592039-592069 7 0.774

1. spacer 3.7|1670790|28|CP033104|PILER-CR matches to MN961670 (Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence) position: , mismatch: 6, identity: 0.786

gaggggaagatctccctgtttcgctgag	CRISPR spacer
gtagggaagatttccctgcttcgctgcc	Protospacer
* .********.******.*******  

2. spacer 3.2|1670785|31|CP033104|CRISPRCasFinder matches to MN961670 (Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence) position: , mismatch: 7, identity: 0.774

gggaagatctccctgtttcgctgagttctca	CRISPR spacer
gggaagatttccctgcttcgctgccctcacc	Protospacer
********.******.*******  .** * 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1696196 : 1731317 56 Pseudomonas_phage(57.89%) portal,terminase,integrase,holin,capsid,head,protease,tail attL 1706616:1706636|attR 1721948:1721968
DBSCAN-SWA_2 1735449 : 1740548 8 uncultured_Caudovirales_phage(75.0%) NA NA
DBSCAN-SWA_3 2366753 : 2377065 13 uncultured_Caudovirales_phage(60.0%) transposase,tRNA NA
DBSCAN-SWA_4 2574094 : 2579660 7 uncultured_Caudovirales_phage(83.33%) NA NA
DBSCAN-SWA_5 3953707 : 3994591 57 uncultured_Caudovirales_phage(68.89%) terminase,coat,head,tail NA
DBSCAN-SWA_6 3997994 : 4009333 18 Pseudomonas_phage(35.71%) transposase NA
DBSCAN-SWA_7 4147539 : 4218440 79 uncultured_Caudovirales_phage(45.95%) transposase,tRNA,plate,portal,terminase,integrase,holin,lysis,capsid,head,tail attL 4162168:4162185|attR 4219016:4219033
DBSCAN-SWA_8 4674724 : 4682308 7 Escherichia_phage(33.33%) NA NA
DBSCAN-SWA_9 4694009 : 4765919 80 Pseudomonas_phage(45.24%) transposase,tRNA,portal,terminase,integrase,holin,capsid,head,protease,tail attL 4722396:4722414|attR 4765956:4765974
DBSCAN-SWA_10 5121259 : 5129038 10 Planktothrix_phage(16.67%) NA NA
DBSCAN-SWA_11 5857751 : 5949944 93 Pseudomonas_phage(75.68%) portal,terminase,integrase,holin,lysis,capsid,head,protease,tail attL 5887157:5887203|attR 5919326:5919372
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage