CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP033137	Vibrio owensii strain 1700302 chromosome 1, complete sequence	0 crisprs	DEDDh,cas3,WYL,csx1,DinG,cas2,csa3	0	5
CP033140	Vibrio owensii strain 1700302 plasmid pVOWZ2, complete sequence	0 crisprs	NA	0	0
CP033138	Vibrio owensii strain 1700302 chromosome 2, complete sequence	1 crisprs	csx1,csa3,cas3,cas5f,cas7f,cas6f	1	4
CP033139	Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

557593 : 575142

uncultured_Mediterranean_phage(18.18%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYO13406.1\|557593_559234_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.6e-154	52.1
AYO13407.1\|559312_560614_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	2.7e-136	60.3
AYO13408.1\|561313_561595_+	cell division protein FtsB	NA	NA	NA	NA
AYO16142.1\|561596_562304_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	1.1e-06	23.0
AYO13409.1\|562318_562795_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AYO13410.1\|562840_563884_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
AYO13411.1\|563883_564660_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.4e-68	54.1
AYO13412.1\|564659_565286_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.7e-38	53.9
AYO13413.1\|565300_566224_+	LysM peptidoglycan-binding domain-containing protein	D7RWE0	Brochothrix_phage	4.1e-06	35.2
AYO13414.1\|566304_567288_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.9e-36	35.2
AYO13415.1\|567376_569938_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	2.2e-33	22.7
AYO13416.1\|570023_570506_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.4e-26	48.7
AYO13417.1\|570706_571750_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	3.1e-111	60.4
AYO13418.1\|571949_572417_+	recombination regulator RecX	NA	NA	NA	NA
AYO13419.1\|572559_575142_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	4.2e-77	37.5

DBSCAN-SWA_2

1677730 : 1687307

Vibrio_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYO14386.1\|1677730_1679815_+	hypothetical protein	A0A2P9JZG7	Alteromonadaceae_phage	2.4e-62	31.0
AYO14387.1\|1679818_1680742_+	hypothetical protein	A0A2P9JZG8	Alteromonadaceae_phage	4.2e-35	31.0
AYO14388.1\|1680743_1681178_+	hypothetical protein	NA	NA	NA	NA
AYO14389.1\|1681168_1681411_+	hypothetical protein	NA	NA	NA	NA
AYO14390.1\|1681403_1681655_+	hypothetical protein	NA	NA	NA	NA
AYO14391.1\|1681670_1681871_+	ANR family transcriptional regulator	NA	NA	NA	NA
AYO14392.1\|1681867_1682824_+	DUF3164 family protein	A0A2D1GNM4	Pseudomonas_phage	2.5e-51	49.0
AYO14393.1\|1682836_1683883_+	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	3.5e-54	35.6
AYO14394.1\|1683879_1684107_+	hypothetical protein	NA	NA	NA	NA
AYO14395.1\|1684227_1684605_+	hypothetical protein	A0A2I7RZB2	Vibrio_phage	1.8e-37	63.4
AYO14396.1\|1684594_1685047_+	hypothetical protein	NA	NA	NA	NA
AYO14397.1\|1685037_1686018_+	hypothetical protein	A0A2I7RWK0	Vibrio_phage	4.0e-20	52.9
AYO14398.1\|1686014_1686251_+	hypothetical protein	NA	NA	NA	NA
AYO14399.1\|1686247_1686463_+	hypothetical protein	NA	NA	NA	NA
AYO14400.1\|1686740_1687307_+	hypothetical protein	Q71TC0	Escherichia_phage	2.0e-19	47.3

DBSCAN-SWA_3

2725861 : 2735438

Vibrio_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYO15252.1\|2725861_2726428_-	hypothetical protein	Q71TC0	Escherichia_phage	2.0e-19	47.3
AYO15253.1\|2726705_2726921_-	hypothetical protein	NA	NA	NA	NA
AYO15254.1\|2726917_2727154_-	hypothetical protein	NA	NA	NA	NA
AYO15255.1\|2727150_2728131_-	hypothetical protein	A0A2I7RWK0	Vibrio_phage	4.0e-20	52.9
AYO15256.1\|2728121_2728574_-	hypothetical protein	NA	NA	NA	NA
AYO15257.1\|2728563_2728941_-	hypothetical protein	A0A2I7RZB2	Vibrio_phage	1.8e-37	63.4
AYO15258.1\|2729061_2729289_-	hypothetical protein	NA	NA	NA	NA
AYO15259.1\|2729285_2730332_-	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	3.5e-54	35.6
AYO15260.1\|2730344_2731301_-	DUF3164 family protein	A0A2D1GNM4	Pseudomonas_phage	2.5e-51	49.0
AYO15261.1\|2731297_2731498_-	ANR family transcriptional regulator	NA	NA	NA	NA
AYO15262.1\|2731513_2731765_-	hypothetical protein	NA	NA	NA	NA
AYO15263.1\|2731757_2732000_-	hypothetical protein	NA	NA	NA	NA
AYO15264.1\|2731990_2732425_-	hypothetical protein	NA	NA	NA	NA
AYO15265.1\|2732426_2733350_-	hypothetical protein	A0A2P9JZG8	Alteromonadaceae_phage	4.2e-35	31.0
AYO15266.1\|2733353_2735438_-	hypothetical protein	A0A2P9JZG7	Alteromonadaceae_phage	2.4e-62	31.0

DBSCAN-SWA_4

2950534 : 2957221

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYO15454.1\|2950534_2951005_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	49.3
AYO15455.1\|2951174_2952284_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.0e-64	40.4
AYO15456.1\|2952442_2953096_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.9e-34	39.5
AYO15457.1\|2953107_2954232_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	9.3e-45	35.8
AYO15458.1\|2954239_2954689_-	transcriptional regulator NrdR	NA	NA	NA	NA
AYO15459.1\|2954815_2956066_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	7.3e-99	47.9
AYO15460.1\|2956081_2957221_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.3e-62	42.0

DBSCAN-SWA_5

3034865 : 3041931

Megavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYO15526.1\|3034865_3035291_-	nucleoside-diphosphate kinase	L7Y4C4	Megavirus	2.7e-21	40.6
AYO15527.1\|3035391_3036690_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	9.1e-36	34.7
AYO15528.1\|3036862_3037057_-	Fe-S assembly protein IscX	NA	NA	NA	NA
AYO15529.1\|3037101_3037440_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
AYO15530.1\|3037453_3039307_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	7.9e-110	40.0
AYO15531.1\|3039328_3039844_-	co-chaperone HscB	NA	NA	NA	NA
AYO15532.1\|3039899_3040223_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.0e-25	51.4
AYO15533.1\|3040295_3040679_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
AYO15534.1\|3040716_3041931_-	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	5.7e-32	30.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP033138

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CRISPR-Cas detection and classification

Crispr_ID: CP033138_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033138_3

1556076-1556158

Unclear

Consensus_repeat	Method
ACAGTGTACTGCCGAATAGGTAG	CRISPRCasFinder

1 spacers

cas6f,cas7f,cas5f

The CRISPR arrays of CP033138_3

>merge|CP033138|3|1556076-1556158|CRISPRCasFinder
ACAGTGTACTGCCGAATAGGTAGCTGATAATTATGGCGTTGGTGCTGCTAAACTTCCTCCACAGCGTACTGCCGAATAGGTAG

>CP033138|3|3|1556076-1556158|CRISPRCasFinder
ACAGTGTACTGCCGAATAGGTAG	CTGATAATTATGGCGTTGGTGCTGCTAAACTTCCTCC
ACAGCGTACTGCCGAATAGGTAG

Protein	Signature genes	Signature genes Name	Protein_function
CP033138.1\|AYO17537.1\|1549525_1551010_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226350
CP033138.1\|AYO17540.1\|1555349_1555949_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|187870
CP033138.1\|AYO17549.1\|1565377_1565818_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|366402
CP033138.1\|AYO17547.1\|1562253_1563297_-\|GMP-reductase	unknown	unknown	gnl\|CDD\|235343
CP033138.1\|AYO17535.1\|1544298_1545894_-\|SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223363
CP033138.1\|AYO17546.1\|1561416_1562106_-\|endonuclease	unknown	unknown	gnl\|CDD\|378037
CP033138.1\|AYO17542.1\|1556647_1557196_+\|hypothetical-protein	unknown	unknown	unknown
CP033138.1\|AYO17545.1\|1559612_1561424_-\|integrase	unknown	unknown	gnl\|CDD\|366234
CP033138.1\|AYO17532.1\|1537105_1538314_-\|IS4-like-element-ISVsa5-family-transposase	unknown	unknown	gnl\|CDD\|376573
CP033138.1\|AYO17548.1\|1563751_1565287_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	unknown	unknown	gnl\|CDD\|182554
CP033138.1\|AYO17544.1\|1558611_1559601_-\|transposase	unknown	unknown	gnl\|CDD\|377533
CP033138.1\|AYO17536.1\|1546013_1549463_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|226581
CP033138.1\|AYO17539.1\|1552384_1554286_+\|hypothetical-protein	cas5f	cd09736_cas5f_CAS-I-F	gnl\|CDD\|187867
CP033138.1\|AYO17541.1\|1556345_1556552_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP033138.1\|AYO18450.1\|1554291_1555347_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|274205
CP033138.1\|AYO17550.1\|1565817_1566822_-\|response-regulator	unknown	unknown	gnl\|CDD\|381124
CP033138.1\|AYO17543.1\|1557189_1558569_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|223989
CP033138.1\|AYO17533.1\|1538663_1539962_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
CP033138.1\|AYO17534.1\|1543111_1544302_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341172
CP033138.1\|AYO17538.1\|1551199_1552384_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377670

Protein	Function_ID	Function_description	E-value
CP033138.1\|AYO17537.1\|1549525_1551010_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	1.77733e-121
CP033138.1\|AYO17540.1\|1555349_1555949_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	6.75446e-41
CP033138.1\|AYO17549.1\|1565377_1565818_-\|PAS-domain-containing-protein	gnl\|CDD\|366402	pfam00989, PAS, PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.	2.18861e-05
CP033138.1\|AYO17535.1\|1544298_1545894_-\|SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	5.70195e-57
CP033138.1\|AYO17546.1\|1561416_1562106_-\|endonuclease	gnl\|CDD\|378037	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The N terminal domain of TnsA is catalytic.	1.66533e-11
CP033138.1\|AYO17543.1\|1557189_1558569_+\|diguanylate-cyclase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	2.0004e-27
CP033138.1\|AYO17545.1\|1559612_1561424_-\|integrase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	2.98057e-11
CP033138.1\|AYO17532.1\|1537105_1538314_-\|IS4-like-element-ISVsa5-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	6.93796e-11
CP033138.1\|AYO17548.1\|1563751_1565287_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	gnl\|CDD\|182554	PRK10565, PRK10565, putative carbohydrate kinase; Provisional.	2.32672e-155
CP033138.1\|AYO17544.1\|1558611_1559601_-\|transposase	gnl\|CDD\|377533	pfam05621, TniB, Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.	1.18384e-20
CP033138.1\|AYO17536.1\|1546013_1549463_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|226581	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
CP033138.1\|AYO17539.1\|1552384_1554286_+\|hypothetical-protein	gnl\|CDD\|187867	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	3.94972e-51
CP033138.1\|AYO17541.1\|1556345_1556552_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.23582e-12
CP033138.1\|AYO18450.1\|1554291_1555347_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|274205	TIGR02566, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	7.45157e-96
CP033138.1\|AYO17550.1\|1565817_1566822_-\|response-regulator	gnl\|CDD\|381124	cd17593, REC_CheC-like, phosphoacceptor receiver (REC) domain of uncharacterized response regulators containing a CheC domain. This subfamily is composed of uncharacterized proteins containing an N-terminal REC domain and a C-terminal CheC domain that may function as the output/effector domain of a response regulator. CheC is a CheY-P phosphatase, affecting the level of phosphorylated CheY which controls the sense of flagella rotation and determine swimming behavior of chemotactic bacteria. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	4.8751e-59
CP033138.1\|AYO17547.1\|1562253_1563297_-\|GMP-reductase	gnl\|CDD\|235343	PRK05096, PRK05096, guanosine 5'-monophosphate oxidoreductase; Provisional.	0
CP033138.1\|AYO17533.1\|1538663_1539962_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.83043e-47
CP033138.1\|AYO17534.1\|1543111_1544302_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341172	cd17283, RMtype1_S_Hpy180ORF7835P_TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Helicobacter pylori SJM180 S subunit (S.Hpy180ORF7835P) TRD2-CR2 and Haemophilus influenzae PittGG S subunit (S.HinGGORF3080P) TRD2-CR2. The recognition sequences of Helicobacter pylori SJM180 S subunit (S.Hpy180ORF7835P) and Haemophilus influenzae PittGG S subunit (S.HinGGORF3080P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	4.35334e-89
CP033138.1\|AYO17538.1\|1551199_1552384_+\|hypothetical-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	3.06391e-16

>CP033138.1|AYO17540.1|1555349_1555949_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNWYYKTVTFIPERCDNEVLAAKCLSILHGFNYKYETRSIGVSFPEWCDDTVGTKLTFISASKVELDLLLKQHYFIQMRRLGYFDISATAKIPEDCEYVLFVRNQSIDKSTAAGQVRKLKRLQKRAMARGESFNPALLRQEESMIVPHYHSLEVSSQSKNSIFRLNIQMKANHGFEGNSMFSSYGLSNTDDSYQAVPLI
>CP033138.1|AYO18450.1|1554291_1555347_+|type-I-F-CRISPR-associated-protein-Csy3
MELPTNLAYERSINPSDVCFLVVWPDGTKEPLRYTSRIALGQMETASLAYDSQGNIKEAVTAEKLAHGNPHAGDFCSVPFGANHIECFFSVSFSSELRKPYKCNSKEVKSTIIKLIELYEKRIGWEYLVSRYLINVCNGSWLWKNTKRAYRLDVELSPWPWSEKPVLFENIHKEYREESAFEAHQRWSAIRQLVVDAFSQSNGLAIFEVKATLVLPTSSEIYPSQAFTEKENKSTNNAGNKARTFQNTQIENVRSPIIGIYKVGAAIATIDDWYPNALEPLRVSRFGAHKGDVTCYRHPSTEKDLFTILQNAEQYIERLSAPGKLSQELTSDLHYLVANLIKGGMFQHKGD
>CP033138.1|AYO17539.1|1552384_1554286_+|hypothetical-protein
MESLKESLQSRPDDLNVELKRAFRPLTPHINIDGKELDALTVLVNLTDKTANQKNLLDRAKCKEKLRDEKWWHFCLNTIEYIQSHNLKFPDIRSGGVIRASTLGSLPEHLLSSSKLPQHFWAYSHDPKYVNKSAFLTSEFCWEGVISCLAIFLQDESHILWTKLLELGCYKKTQKAVLKKLRSFDAQKIDVALTGNYLTQLSLPNDEGSYVSFSPVASQSMQSHCYQTLSQNYQYSVTTRFSRITSMGVLPMTCGGAFRMFRSVPNFSQTPHCNLSNNERWLTKESIQSLKDYTHLNKRLITDNQKQAYRKSATDNIRKMIRAWLSHQNSEIDADTLTEYLNYDLSQMRTTKRFAYLPKLTRLLHSLLKQELKDPLFEPNNDSCNSKTGAFLLLPNIRVSGASALSSSMTVGIPSLTAFYGYVHSFECHLKESNSAAEIESFAVCIHQFHLDKRGLTKEFVEKANGTISPPSTHDDWQCDFTFSLVLKFSHQPNIPDDSIIKVLPKRLARGTAKISIADFHNIQSFDSLTSAIEHVPIQKGKWLSLYKSHLNSFDDLISSVREKRWLTPSCVGFHLLEKPSEKRGSLRGYKHAFSEPIIGLINPIVFGNKTDSNEILWRYKYHTDYISIQTEA
>CP033138.1|AYO17538.1|1551199_1552384_+|hypothetical-protein
MFLQRPKPYSDESLESFFIRVANKNGYSDVHRFLEATKGFLQDIDHNAYQTFPTNIAKINPCLAKDSSGARTASLLKLAQLTFNEPTELLGLAINRTNLKYSPSTSAVIRGSEVFPRSLLRTKSIPCCPLCLQENGYASYLWHFEGYDHCHIHDVPLLNSCRCGAEHDYRVSSLSGMCGSCEATLAIKSREKSHSATLSVANWLAGNECKNLPHVPRSYRWGLVHWWSHISDNEFDHFSFVQFFSNWPRAFHSMIDDEIEFNLEHAIVGKKELRVKDLFGRIFFSSIRLPERNLQQNIVLGELLRHVEAHLWDNEGLLANLRMNALEATVFLNCSLDEIASMVEQRILKPNRKPKPNMPLAVNDYLFYFGDIFCLWLAEFQTDEFNRSFYVSRW
>CP033138.1|AYO17537.1|1549525_1551010_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MATLLTWLGRTDLDQMRQDKPASIATIALKCKPLDSIIILASTWDDEWHDYKEWLERKLACVGRSKTLVTIQRVRLASPIDYSAITKVMQKQLSKISAGSEHIYLNLTSGTPAMAVISVLLGKSIAKCQLLQTSPKGEIIEVDIPVDFATEYAKSSINAIQSLTSDTPQLSSAFEAITAKSKIMQLLVNKAHRLALSDLPALVLGESGSGKEVMATAIHNASSRSDKPFRAVNCGALPENLVDSILFGHVKGAFTGADKDHTGLFEQANGGTLFLDEVGELPLNVQVKLLRALQQKEITRVGDVKSKVVDVRIIAATHQDLFQMISQGAFREDLFYRLAVGVIEMPPLRARTEDIPELISTLMGDINQQVEKHPLFESKKISTDAINFAQSYSWPGNIRELWNTLNRAVLWSESPTISAEDLQSSVLSAGRRQSSRGEFFVPGDIQQYIDTIKKDAVESALEYSRNNKSKAAEVLGLKSHQTLSGWMTKLGIEE
>CP033138.1|AYO17536.1|1546013_1549463_-|DEAD/DEAH-box-helicase
MKTSVNFEHLRKDWPELAELGAFAEAYAVTDPQSSMVKLRCYVEKIVGYLYRELRLPVLPNASVHDKLTSASFTAIIHKDILDKFHAVRKGGNKAAHDGYVNQHDALWLLKESYLIGCWLFIAYGDGSQEECPRYTQPDNAPLEGESKADFKRKNKQLQQKLAQNSEQLTQALKELEEAKEAQLLAQQAASKLKLQVDQTKAEKLKRNTLKLKNSFDFNEAETRKRLIDSELRSEGWDVALAEVSTEQVSKEYEVEGQPTQSGKGRCDYVLWDDNGKPLAVIEAKKTRVDARAGQEQAKIYADALEKQTGQRPVIFYTNGYDIWLWDDAQGYVPRKLFGYYSKDSLQYLIQQRALKKDLNSTPIDTEVAGRLYQMESITRVCERFSDKHRKALIVQATGTGKTRVSIALTKRLLDAGWAKRVLFLCDRKELRKQAANAFNEFTKEPLFVKGKSKKDLASKARIVIATYPGMMQTFEEFDVGHFDLIIADESHRSIYNKYGELFKYFDALQVGLTATPVEMISRSTSQLFGCDYKMPTANYPLEQAIEEGNLVPFKVVSHTTKFLRDGIKGNELTDEQIAELEDQGIDPNELDFDSKLVDKAIFNKDTNRQIIRNLMERGLKDADNQLPGKSIIFARSIKHAELIADLFGEMYPDLGGNFCRVIHSKYERADELIDNFKSAEGNKEEITIAVSVDMLDTGIDVPECINLVFAKPIKSKVKFWQMVGRGTRLCENLYGHGLDKKHFLIFDHWNNFEYFKMNPEEDEGAKGKSLAQKVFEARLNLADEALKRAEMDIFDSVIPQIKADIDSLNDKTIEVRESWQIKAQLSDEKTLHQMAPDTKELLRSTMAPLMQWKPITGESEALRLDLQFLELELIKLKQPSKVDIVAMPIMEKVTTLSMHLNEVRSKANSIKQVQQPNFWNDADHNVLETCRSELRTVIHLRDKGATPPTKPTPVLDVKEEAAEYRTEEVKTDIVTVDYQIYKQEVEKTLSPLFESNEVLRKIRAGQSVTEADLDTLNALVHTQNPSVDLEILKEFFPESTAGLDQILRTIVGMDAKAIEKEFTAFVQQVHTHLNSRQQRFIGMLKNHLCRYGSVDIEQLYDAPFNQIDDAGLDGVFPIQAQADVVEQFVRRFSVHLGEKQASVEKVVN
>CP033138.1|AYO17535.1|1544298_1545894_-|SAM-dependent-DNA-methyltransferase
MITSGALKSQIDKLWEEFWTGGITNPLTVVEQITYLMYARMLDMNERNDEKRSARTGKPFNRRFPVSEDKEKDKQHIRWENFRHLGAEQLYPLVKDELFPFFKELTSDDTLFAEFMKDAQLMIQKQSLLVKAVELVSELPLENKDVKGDLYEYLLSKLTTAGINGQFRTPRHIIRAMIEMLDVEETHRVCDPACGTGGFLSSTYEYLLEKYSSPEGVEKEQAFDIEGKPVLDVHGNPVFNYLYAGDLLENRAHIDYDMFHGFDFDSTMLRVAAMNLVMHGVKQPDIHYQDTLSQSFIERFPDEAKNGFDIILANPPFKGSLDEEDVDPAILKVVKTKKTELLFVALIQRMLKVGGRTATIVPDGVLFGSSKAHQTLRKHLVEDNQLEAVISLPSGVFKPYAGVSTAILIFTKGGSTNNVWFYDVQADGKSLDDKRTPIKDNDLPDLVKQYKAYQAAVAEGQSTEQWADKTQKAFLVAKDDIKTNKYDLSINRYKEVVYEQESYEEPKVILGKLKALENEILADLDELESML
>CP033138.1|AYO17534.1|1543111_1544302_-|restriction-endonuclease-subunit-S
MSWPIVKIEDIFDVARGGSPRPIDAFITDDPDGVNWIMIGDTKSGEKYISTTAKRIRPEGVKKSRVVKEGDFLLTNSMSFGRPYILKTSGCIHDGWLVLSPKSDNIYTDYFYYYLGSQEIKNKLAGKAAGAVVKNLNKDIVKGLEIPLPPLEEQKRIAAILDKADAIRQKRKQAIELADEFLRSVFLDMFGDPVSNPKGWDTSTLDELAIGKFQNGAYFPKDQYSTEGVEMVHMSDAFYDYVPRGSMKRVIVGDADLKKYEVNAKDLLISRRSLNYEGAAKPSLIEASDAPLLFESSLIRITPNPQLVNKLYLFSYLSNEIVKEHKIRKYVTGATIKGISQKNLEKVEVLVPPVELQEKFAQIFIKIEKIKTQLHQPLLNRDVFESLSQKAFSGQL
>CP033138.1|AYO17533.1|1538663_1539962_-|methyl-accepting-chemotaxis-protein
MAYIMSTKIKLILVSTIPALILVLVMTSLAIRDMNTIRTHLSETVASKVQSGEFNSKSISEIKAILEEVGSNKQEQLSQSSIPEIIIIMVVLVAISLLLVNRTFREISFIVQQVKVICDASTPLSFRIDLTKCKEFKALAIDLNRMQEQNANVLQNVQTMSDTLNSSSEELKATSSSNQVSNQKLLLNMDSVATSITEFQSSSLEIASNVQLAYQAIADVNQDGQNLSTNIQALNKRLTELREVTFAASNNVSELGEHVEGIDTIIRTIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASKTHQSTEEIASMIYGLREKSSISIQAMEHSSSATDELTNSMNATNSEVLSLFERLISVNDMNAQIASASEEQSLVIDEISRHIEEVKNLAGDTEKGSSITGSKANEMRKSSQELQGLISNFVF
>CP033138.1|AYO17532.1|1537105_1538314_-|IS4-like-element-ISVsa5-family-transposase
MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWLAGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNLFTHGYVLGKL
>CP033138.1|AYO17541.1|1556345_1556552_-|XRE-family-transcriptional-regulator
MRDLAKKFGAKLRGIRRDRGVSQDHLALTADIDRSYIGRIERGEVNITLEKAYQLAEVLECDVRDLLP
>CP033138.1|AYO17542.1|1556647_1557196_+|hypothetical-protein
MPKLHRIDSNIYQYISPPEATDFTILEVRDWVLKCSDMYGSKSAARLFVARQLEALVKVGLISVNSSGRKKTFSKTAYFNEDKIKIVTKKQRTKKEVLPVHSHDKSIFNELRNERADIEAELAITLAEVDEYKALMARSNALNTLLKASYSEATQKAATLMAKLNVWTHTISLMQLDRKSPC
>CP033138.1|AYO17543.1|1557189_1558569_+|diguanylate-cyclase
MLRVWQKECVNLALNNYQNGKKHFLAQATPGAGKTIMAANLAKQMLEKNLIDFVLCFSPSKIVSNSISACFSSVLGRSFDGRLGSVGCSMTYQYLQYLDEQFWQTLSRYRVLCVFDEIHHCAGDDDSNTNSWGHHILYDVQKVSTYTLALTGTPWRSNLTPIVLSSYTDPDGAIVCDYQYTLAQAVQDGVCRKPTIALIDCEESIIKANNQIRSFGSLDELISTGEINYSAILNDKSALLHIVEIAVDRLANIRTQSSSAGGLIVATSVNHAIEIASLLQDKYCQTTTIVTYKNEGSHEQIEQFKTSTTEWIVSVGMVSEGTDIPRLQVCCHLSNITTELYFRQILGRILRMTASPNQEAWLYTFAAPKLIAFAEEIEQDIPDCCTYLKLSNKTTDIKIQKTNRFSLNYHKLKGNTATLNFSQKSTHDVLPKLGSNTDKAIELSLISYKQRIIEAFQHR
>CP033138.1|AYO17544.1|1558611_1559601_-|transposase
MNETREARISKAKRAFVSTPSVTKILSYMDRCRDLSDFESEPTCMMVFGASGVGKTTVIKKYLSQNNRDSKVRGDVVPVLHIELPDNAKPVDAARELLLEMGDPLALYDTDLARLTQKLTDLIPVVGVKLIIIDEFQHLVEERSNRILTQVGNWLKMILNRTKCPIVLFGMPYSKVVLTANSQLHGRFSIQFELRPFNYQGGEGVFKNFLWNLDKALPFDKEIGLANDDLKKKLYAFSQGNMRSLRNLIYHASVEAIDNNHDTITIKDFVFAAKLTSGDKLSSWINPFEKGTKVTEQMLRPPPEDIGWEDYLRNKPKKNRKNQDSNMFD
>CP033138.1|AYO17545.1|1559612_1561424_-|integrase
MPKKSFSSFHRKSALQQEKLEQNDRVVDSNDVDEAIYQDISAFPENIANQITFRLSILRFLAGKCEKITPKTIEPYRVALQRLHDTNIPSSISIYRWWLVFRASGYNPVSLAPNFKSRGNRGAKVSPVVDSIMEQAVERVISGRKINISSAHRRVKRKVRQYNLTHGTNYSYPKYESVRIRVKKKTPFEVLVAKKGERVAKREFRRMGKKITTSAVLERVEIDHTMVDIFAVHPVHRVTLGRPWLTQLVDCYSKAVIGFYLGFEPPSYVSVSLALKNAIQRKDDLLSSYESIENEWLCYGIPDLLVTDNGKEFLSKAFDKACESLLINVHQNRVEVPDNKPDVERKYGTINTSLLDDLPGKAFSQYLQREGYDSVDEATLTLDEIQEIYLIWLVDIYHKGSNQRGTNCPNIAWRNGCQEWEPEEFSGPKDELDFKFAIVDSKQLTKAGVTVYKGLTYSSERLAGYRGKKGNHKVQFKYNPECMAVIWVLDEDVNEYFTVNAIDYEYASRVSLWQHKYNMKYLAELNSAEYDEDKEIDSEIKIEEIADRSILETKKIRSRRRGARHQENSARAKSISNTKLVPPQKDEEEIVIVDNEDWDIDYV
>CP033138.1|AYO17546.1|1561416_1562106_-|endonuclease
MSALPSLSTATLLELETAFDTPARNLTKSRGKNIHRYVSAKMGKRVTVESFLECAACYHFDFEPSIVRFCSQPIRFSYNLNGKTHTYVPDFLVQFDTGEYKLYEVKSDKESSNEEFHCEWEAKVQGAFDIGLELELVVEEDILDEVIFNNLKLLHRYASRDNLNDFHQILLTTLKRNGTQTAKSLGHHLGLNGRKILPFLCDLLSRNLLQTSLETPLSLESEFELGCYA
>CP033138.1|AYO17547.1|1562253_1563297_-|GMP-reductase
MRIEQELKLGFKDVLFRPKRSTLKSRSQVNLTRDFTFKHSGRQWSGVPVIAANMDSVGSFAMAKALAEHGVMTAVHKHYTVEDWAEFAKTADKTTLNNVMVSTGTSDADFQKTKDIMAISDEFIFICIDIANGYSEHLVEYVQRVRAAFPDKVISAGNVVTGDMCEELILAGADIVKVGIGPGSVCTTRVKTGVGYPQLSAIIECGDAAHGLGGMIIGDGGCSCAGDVAKAFGGGADFVMLGGMLAGHEESGGEVIEQDGKQFMKFYGMSSKSAMDKHSGGVAGYRAAEGKTVLLPFRGSVHGTIQDILGGVRSTCTYVGAAKLKELTKRTTFIRVQEQENNVFGKE
>CP033138.1|AYO17548.1|1563751_1565287_-|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase
MDFNLALKLYTAEQVRDGEILTAQMAGVSMYSLMQRAGMAVYERFLHLYPRARTVLVVCGKGNNGGDGYVFATLAKQAQLNVRVFQLGDITSLKGDALRAFEDWQSVDGENSSWDDWHTALLEADVIIDAMLGTGLSGEVRHEYRRYIDQVNQIHCPVISIDIPSGLSADTGSVLGDAIQADHTVTFIGVKQGLCTGQARDYVGELHFSGLGVNVEFESIEEESALGIDHQIIKRLLPKRKATAHKGNNGKLLCIGGNQGMSGAIRLCASAAVRTGAGLTAALSHPSSLLPLQVGSPEVMSQAITFDELKEADNELVKRTRWADVLAFGPGFGEDEWAHQAYQYLSQQHKLKVVDADGLNILAMLNQRNDVVVLRDELRVMTPHPGEAARLLNISTKDIEQDRFAAARQLHERYGGVVVLKGAGTLIYDGVRMYVCLAGNPGMASGGMGDVLSGVIAALLAKGLPIAVAARLGVMLHSHAADINVQQKGEIGLLASDVIESLRCAINVTES
>CP033138.1|AYO17549.1|1565377_1565818_-|PAS-domain-containing-protein
MLNLPAEFEQFHWMVDMVQNVDMGLVVIDKDYNVQVWNGFMTHHSGLQSHEAIGRSIFDIFPEIPQEWFKLKTKPVYDLGCRSFITWRQRPYLFRCRNVRPVTQQAEFMYQNVTLNPMRTPTGKINSLFLSIQDATAEALMSQQQK
>CP033138.1|AYO17550.1|1565817_1566822_-|response-regulator
MSFPVLICDDSALARKQMARSLPATLNADVTFAIHGKNALEELAQKEFKLMFLDLTMPEMDGFETLENMKRLGIQTPVVVVSGDIQPKAKERVFALGAKAFIQKPIGKDELKATLKELIEPNDRPQVITPTTIELPILRRRDIYMEVANVSIGRAADALARHFDVFVQLPLPNVNIFEVSELHMALRDLASHDNVSGVCQGFCGEGIAGEALVILSDSSVSDLKKLMKVPADSEELEELELLMDISNILVGSFLNGLGEQSEVRFFQSSPVLLGQHISIDSIIESTTGAFSRTMTFEVSYNIEGTSIRCDLLFMFVDESLPLLDNKLSYLMEDF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP033138_3	3.1\|1556099\|37\|CP033138\|CRISPRCasFinder	1556099-1556135	37	NZ_AP019800	Vibrio rotiferianus strain AM7 plasmid pAM7, complete sequence	27654-27690	7	0.811

1. spacer 3.1|1556099|37|CP033138|CRISPRCasFinder matches to NZ_AP019800 (Vibrio rotiferianus strain AM7 plasmid pAM7, complete sequence) position: , mismatch: 7, identity: 0.811

ctgataattatggcgttggtgctgctaaacttcctcc	CRISPR spacer
aaataaactatggcgttcgtgctgctaaacttcctcc	Protospacer
  .  **.********* *******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

930608 : 940880

Vibrio_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYO17041.1\|930608_931799_+	DUF4102 domain-containing protein	A0A2H4JB45	uncultured_Caudovirales_phage	2.1e-47	30.4
AYO17042.1\|931801_932104_+	DUF4156 domain-containing protein	NA	NA	NA	NA
AYO17043.1\|932148_932409_-	hypothetical protein	NA	NA	NA	NA
AYO17044.1\|932377_932641_-	hypothetical protein	NA	NA	NA	NA
AYO17045.1\|932642_933083_-	hypothetical protein	NA	NA	NA	NA
AYO17046.1\|933075_933693_-	adenine methylase	M4MB46	Vibrio_phage	5.1e-61	59.1
AYO17047.1\|933712_934138_-	hypothetical protein	NA	NA	NA	NA
AYO17048.1\|934128_934422_-	hypothetical protein	NA	NA	NA	NA
AYO17049.1\|934418_934616_-	hypothetical protein	NA	NA	NA	NA
AYO17050.1\|934626_935154_-	hypothetical protein	A0A2I7R812	Vibrio_phage	7.7e-10	42.7
AYO17051.1\|935163_936273_-	hypothetical protein	M4MHC3	Vibrio_phage	7.5e-31	34.2
AYO17052.1\|936321_937155_-	DUF2303 family protein	R9TRN9	Vibrio_phage	3.5e-57	42.7
AYO17053.1\|937167_937575_-	hypothetical protein	R9TMP0	Vibrio_phage	5.5e-24	45.3
AYO17054.1\|937870_938515_-	XRE family transcriptional regulator	NA	NA	NA	NA
AYO17055.1\|938860_939193_+	hypothetical protein	NA	NA	NA	NA
AYO17056.1\|939319_940117_+	hypothetical protein	A0A2I7RQ62	Vibrio_phage	2.3e-18	39.2
AYO17057.1\|940022_940880_+	hypothetical protein	A0A2I7S8I6	Vibrio_phage	9.6e-34	34.3

DBSCAN-SWA_2

948740 : 962938

Vibrio_phage(69.23%)

portal,terminase,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYO17079.1\|948740_949295_+	hypothetical protein	A0A023W5J8	Serratia_phage	2.1e-05	27.9
AYO17080.1\|949281_949635_+	hypothetical protein	A0A2I7S3K8	Vibrio_phage	4.7e-11	45.6
AYO17081.1\|950026_950764_+	hypothetical protein	A0A2H4N7C2	Pectobacterium_phage	8.7e-60	54.9
AYO17082.1\|950855_951266_+	hypothetical protein	M4M9H1	Vibrio_phage	9.5e-32	55.9
AYO17083.1\|951327_952260_+	hypothetical protein	NA	NA	NA	NA
AYO17084.1\|952249_953980_+\|terminase	terminase	M4MCI5	Vibrio_phage	7.0e-193	58.8
AYO17085.1\|953997_956106_+\|portal	portal protein	M4MB09	Vibrio_phage	7.6e-250	67.4
AYO17086.1\|956118_956409_+	hypothetical protein	NA	NA	NA	NA
AYO17087.1\|956408_956627_+	hypothetical protein	NA	NA	NA	NA
AYO17088.1\|956623_956839_+	hypothetical protein	NA	NA	NA	NA
AYO17089.1\|956849_957464_+	hypothetical protein	M4MH83	Vibrio_phage	8.1e-11	41.7
AYO17090.1\|957456_957942_+	hypothetical protein	M4MH86	Vibrio_phage	9.2e-42	52.5
AYO17091.1\|958221_959346_+	hypothetical protein	M4M9I4	Vibrio_phage	1.2e-47	42.8
AYO17092.1\|959362_960583_+\|capsid	N4-gp56 family major capsid protein	M4M9G4	Vibrio_phage	1.3e-169	73.9
AYO17093.1\|960639_961044_+	hypothetical protein	NA	NA	NA	NA
AYO17094.1\|961171_961666_+	hypothetical protein	M4MB04	Vibrio_phage	4.4e-15	35.8
AYO17095.1\|961669_962260_+	hypothetical protein	A0A1B1ITE9	uncultured_Mediterranean_phage	2.8e-16	32.5
AYO17096.1\|962272_962938_+	hypothetical protein	A0A1B1ITG1	uncultured_Mediterranean_phage	3.2e-29	32.1

DBSCAN-SWA_3

1491903 : 1524296

Bacillus_virus(28.57%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYO17496.1\|1491903_1493088_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.6e-26	35.8
AYO17497.1\|1493089_1493932_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
AYO17498.1\|1493994_1494933_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
AYO17499.1\|1494962_1496663_-\|holin	choline dehydrogenase	A0A1V0S9J5	Catovirus	6.7e-47	28.5
AYO17500.1\|1496682_1498143_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
AYO17501.1\|1498159_1498759_-	transcriptional regulator BetI	NA	NA	NA	NA
AYO17502.1\|1499305_1500757_+	coniferyl aldehyde dehydrogenase	NA	NA	NA	NA
AYO17503.1\|1500804_1501803_-	AraC family transcriptional regulator	NA	NA	NA	NA
AYO17504.1\|1501950_1503039_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	3.5e-17	32.7
AYO17505.1\|1503245_1503566_+	hypothetical protein	NA	NA	NA	NA
AYO17506.1\|1504459_1505722_-	amidohydrolase family protein	NA	NA	NA	NA
AYO17507.1\|1505905_1507042_+	hypothetical protein	G9IA57	Pseudomonas_phage	1.9e-29	39.8
AYO17508.1\|1507084_1508092_-	XRE family transcriptional regulator	NA	NA	NA	NA
AYO17509.1\|1508357_1508633_-	ANR family transcriptional regulator	NA	NA	NA	NA
AYO17510.1\|1508893_1510009_-	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA
AYO17511.1\|1510035_1510473_-	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA
AYO17512.1\|1511112_1512027_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	2.6e-170	96.7
AYO17513.1\|1512394_1513645_-	maltoporin	NA	NA	NA	NA
AYO17514.1\|1513791_1515858_-	beta-galactosidase	NA	NA	NA	NA
AYO17515.1\|1515857_1517090_-	galactosidase	NA	NA	NA	NA
AYO17516.1\|1517108_1517951_-	sugar ABC transporter permease	NA	NA	NA	NA
AYO17517.1\|1517955_1519260_-	ABC transporter permease subunit	NA	NA	NA	NA
AYO17518.1\|1519356_1520592_-	extracellular solute-binding protein	NA	NA	NA	NA
AYO17519.1\|1520584_1520791_-	hypothetical protein	NA	NA	NA	NA
AYO17520.1\|1520807_1521911_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G3M9Y6	Bacillus_virus	8.5e-27	34.3
AYO17521.1\|1521989_1522997_+	LacI family transcriptional regulator	NA	NA	NA	NA
AYO17522.1\|1523381_1524296_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	2.6e-170	96.7

DBSCAN-SWA_4

2152149 : 2194342

Vibrio_phage(37.5%)

tail,capsid,head,plate,integrase

attL 2143089:2143106|attR 2178586:2178603

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2143089:2143106	attL	NA	NA	NA	NA
AYO18054.1\|2152149_2152950_-\|integrase	integrase	NA	NA	NA	NA
AYO18055.1\|2153477_2153909_-	hypothetical protein	NA	NA	NA	NA
AYO18056.1\|2154115_2154442_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
AYO18057.1\|2154511_2157262_-	insulinase family protein	NA	NA	NA	NA
AYO18058.1\|2157579_2159466_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.2e-15	57.0
AYO18059.1\|2159699_2160632_+	hypothetical protein	V9LZ18	Vibrio_phage	3.8e-12	29.7
AYO18060.1\|2160638_2161088_-	DUF302 domain-containing protein	NA	NA	NA	NA
AYO18061.1\|2161306_2163298_+	U32 family peptidase	NA	NA	NA	NA
AYO18062.1\|2163340_2163727_+	hypothetical protein	NA	NA	NA	NA
AYO18469.1\|2165341_2166139_-	hypothetical protein	NA	NA	NA	NA
AYO18063.1\|2166341_2166614_+	transcriptional regulator	F6MII4	Haemophilus_phage	8.0e-11	50.7
AYO18064.1\|2166613_2168686_+	hypothetical protein	M4M9R2	Vibrio_phage	8.7e-65	30.0
AYO18065.1\|2168689_2169613_+	hypothetical protein	A0A2P9JZG8	Alteromonadaceae_phage	9.3e-35	30.8
AYO18066.1\|2169614_2169914_+	hypothetical protein	NA	NA	NA	NA
AYO18067.1\|2170046_2170397_+	hypothetical protein	NA	NA	NA	NA
AYO18068.1\|2170570_2170768_+	ANR family transcriptional regulator	NA	NA	NA	NA
AYO18069.1\|2170772_2171300_+	hypothetical protein	NA	NA	NA	NA
AYO18070.1\|2171217_2171907_+	DUF3164 family protein	A0A2D1GNM4	Pseudomonas_phage	1.1e-45	45.5
AYO18071.1\|2171919_2172975_+	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	3.2e-55	36.4
AYO18072.1\|2172967_2173195_+	hypothetical protein	NA	NA	NA	NA
AYO18073.1\|2173315_2173687_+	hypothetical protein	A0A2I7RZB2	Vibrio_phage	4.1e-42	70.2
AYO18074.1\|2173686_2174142_+	hypothetical protein	NA	NA	NA	NA
AYO18075.1\|2174132_2175149_+	hypothetical protein	A0A2I7RWK0	Vibrio_phage	5.7e-17	50.6
AYO18076.1\|2175145_2175367_+	hypothetical protein	M4MCS5	Vibrio_phage	5.0e-11	53.0
AYO18077.1\|2175611_2176088_+	hypothetical protein	NA	NA	NA	NA
AYO18078.1\|2176201_2176636_+	regulatory protein GemA	NA	NA	NA	NA
AYO18079.1\|2176628_2176901_+	hypothetical protein	NA	NA	NA	NA
AYO18080.1\|2177128_2177338_-	hypothetical protein	NA	NA	NA	NA
AYO18081.1\|2177330_2177543_-	hypothetical protein	NA	NA	NA	NA
AYO18082.1\|2177546_2178515_-	hypothetical protein	D6QWP0	uncultured_phage	2.7e-32	44.8
AYO18083.1\|2178511_2179675_-\|plate	phage baseplate protein	NA	NA	NA	NA
2178586:2178603	attR	NA	NA	NA	NA
AYO18084.1\|2179675_2180683_-	hypothetical protein	NA	NA	NA	NA
AYO18085.1\|2180670_2180892_-	hypothetical protein	NA	NA	NA	NA
AYO18086.1\|2180875_2181292_-	hypothetical protein	NA	NA	NA	NA
AYO18087.1\|2181272_2181926_-	hypothetical protein	NA	NA	NA	NA
AYO18088.1\|2181922_2182543_-	hypothetical protein	NA	NA	NA	NA
AYO18089.1\|2182685_2183228_+	DUF3486 family protein	NA	NA	NA	NA
AYO18090.1\|2183224_2184865_+	hypothetical protein	H7BVL4	unidentified_phage	2.8e-34	30.0
AYO18091.1\|2184861_2185587_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
AYO18092.1\|2185706_2186069_+	hypothetical protein	NA	NA	NA	NA
AYO18093.1\|2186140_2187925_+\|tail	phage tail protein	A4JWK5	Burkholderia_virus	2.2e-24	26.0
AYO18094.1\|2187924_2188443_+	hypothetical protein	NA	NA	NA	NA
AYO18095.1\|2188452_2189427_+	hypothetical protein	NA	NA	NA	NA
AYO18096.1\|2189427_2189859_+	hypothetical protein	NA	NA	NA	NA
AYO18097.1\|2189858_2190497_+	hypothetical protein	NA	NA	NA	NA
AYO18098.1\|2190541_2191558_+\|capsid	minor capsid protein E	A0A248XCX5	Klebsiella_phage	3.4e-06	24.7
AYO18099.1\|2191561_2192005_+	hypothetical protein	NA	NA	NA	NA
AYO18100.1\|2191940_2193050_+	DUF935 family protein	A4JWJ5	Burkholderia_virus	1.7e-06	23.0
AYO18101.1\|2193040_2194342_+\|head	phage head morphogenesis protein	Q6QIB9	Burkholderia_phage	1.8e-12	30.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP033137

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP033138

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection