CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP028480	Klebsiella pneumoniae strain 2e plasmid unnamed2	0 crisprs	NA	1
CP028478	Klebsiella pneumoniae strain 2e chromosome, complete genome	3 crisprs	csa3,WYL,cas3,DEDDh,DinG,RT	8
CP028479	Klebsiella pneumoniae strain 2e plasmid unnamed1, complete sequence	0 crisprs	csa3	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

39137 : 64311

Escherichia_phage(37.5%)

transposase,integrase

attL 39074:39133|attR 52528:53348

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
39074:39133	attL	NA	NA	NA	NA
AYO70604.1\|39137_39842_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYO70605.1\|39787_39991_-	hypothetical protein	NA	NA	NA	NA
AYO70606.1\|40002_40572_-	recombinase family protein	E5FFF9	Burkholderia_phage	5.2e-36	43.2
AYO70607.1\|40711_41026_-\|transposase	transposase	NA	NA	NA	NA
AYO70608.1\|40964_41978_-\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AYO70609.1\|42133_42607_+	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
AYO70610.1\|42853_43558_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYO70611.1\|45454_46459_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
AYO70612.1\|46640_46817_-	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
AYO70613.1\|48046_48349_+	phosphoglucosamine mutase	NA	NA	NA	NA
AYO70614.1\|48242_48494_-	hypothetical protein	NA	NA	NA	NA
AYO70615.1\|48524_50018_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AYO70616.1\|50228_50453_-	hypothetical protein	NA	NA	NA	NA
AYO70617.1\|50449_51187_-	resolvase	NA	NA	NA	NA
AYO70618.1\|51293_51785_+	hypothetical protein	NA	NA	NA	NA
AYO70619.1\|51818_52523_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYO70620.1\|52513_52669_+	replication initiator protein	NA	NA	NA	NA
AYO70621.1\|52700_53378_-	TetR family transcriptional regulator	NA	NA	NA	NA
52528:53348	attR	NA	NA	NA	NA
AYO70622.1\|54686_55571_-	EamA family transporter	NA	NA	NA	NA
AYO70648.1\|55708_56101_-	cysteine hydrolase	NA	NA	NA	NA
AYO70623.1\|59029_59887_+	class A beta-lactamase LAP-2	Q1MVP3	Enterobacteria_phage	2.0e-92	61.1
AYO70624.1\|61483_62140_+	quinolone resistance pentapeptide repeat protein QnrS1	NA	NA	NA	NA
AYO70625.1\|62919_64311_-\|transposase	ISKra4 family transposase ISKpn19	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP028478

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CRISPR-Cas detection and classification

Crispr_ID: CP028478_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028478_1

466528-466626

Orphan

Consensus_repeat	Method
AACTCGCCACCACTCGCCACCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028478_1

>merge|CP028478|1|466528-466626|CRISPRCasFinder
AACTCGCCACCACTCGCCACCACTTTTCCTTGTAAGCCAGGCGTGGCGCGGGTTTGAGCGTGGTGACGAGTGTTTTGACTCGCCACCACTCGCCACCAC

>CP028478|1|1|466528-466626|CRISPRCasFinder
AACTCGCCACCACTCGCCACCAC	TTTTCCTTGTAAGCCAGGCGTGGCGCGGGTTTGAGCGTGGTGACGAGTGTTTT
GACTCGCCACCACTCGCCACCAC

Protein	Signature genes	Signature genes Name	Protein_function
CP028478.1\|AYO65926.1\|466051_466273_+\|hypothetical-protein	unknown	unknown	unknown
CP028478.1\|AYO70215.1\|468952_469150_+\|hypothetical-protein	unknown	unknown	unknown
CP028478.1\|AYO65935.1\|474064_475516_-\|sodium/panthothenate-symporter	unknown	unknown	gnl\|CDD\|236519
CP028478.1\|AYO65921.1\|456769_459880_-\|hydrophobe/amphiphile-efflux-1-family-RND-transporter	unknown	unknown	gnl\|CDD\|185081
CP028478.1\|AYO65923.1\|461410_462061_+\|acrEF/envCD-operon-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182177
CP028478.1\|AYO65925.1\|464085_464367_+\|hypothetical-protein	unknown	unknown	unknown
CP028478.1\|AYO65932.1\|471848_472814_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|182440
CP028478.1\|AYO65933.1\|472971_473166_-\|hypothetical-protein	unknown	unknown	unknown
CP028478.1\|AYO65924.1\|463897_464077_+\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|225848
CP028478.1\|AYO65928.1\|467919_468234_+\|hypothetical-protein	unknown	unknown	unknown
CP028478.1\|AYO70214.1\|464749_466042_+\|P-loop-ATPase	unknown	unknown	gnl\|CDD\|283041
CP028478.1\|AYO65931.1\|471527_471824_-\|Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|179020
CP028478.1\|AYO65929.1\|468623_468944_+\|hypothetical-protein	unknown	unknown	unknown
CP028478.1\|AYO65927.1\|467005_467917_+\|hypothetical-protein	unknown	unknown	unknown
CP028478.1\|AYO65919.1\|449726_450281_-\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|223735
CP028478.1\|AYO70213.1\|462329_463559_+\|integrase	unknown	unknown	gnl\|CDD\|271182
CP028478.1\|AYO65922.1\|459892_461032_-\|MexX-family-efflux-pump-subunit	unknown	unknown	gnl\|CDD\|184990
CP028478.1\|AYO65934.1\|473171_474053_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
CP028478.1\|AYO65920.1\|456255_456477_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227920
CP028478.1\|AYO65930.1\|469164_471444_+\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|273790

Protein	Function_ID	Function_description	E-value
CP028478.1\|AYO65935.1\|474064_475516_-\|sodium/panthothenate-symporter	gnl\|CDD\|236519	PRK09442, panF, sodium/pantothenate symporter.	0
CP028478.1\|AYO65921.1\|456769_459880_-\|hydrophobe/amphiphile-efflux-1-family-RND-transporter	gnl\|CDD\|185081	PRK15127, PRK15127, multidrug efflux RND transporter permease subunit AcrB.	0
CP028478.1\|AYO65923.1\|461410_462061_+\|acrEF/envCD-operon-transcriptional-regulator	gnl\|CDD\|182177	PRK09975, PRK09975, DNA-binding transcriptional regulator EnvR; Provisional.	1.49444e-138
CP028478.1\|AYO65931.1\|471527_471824_-\|Fis-family-transcriptional-regulator	gnl\|CDD\|179020	PRK00430, fis, DNA-binding transcriptional regulator Fis.	6.84357e-55
CP028478.1\|AYO70214.1\|464749_466042_+\|P-loop-ATPase	gnl\|CDD\|283041	pfam05272, VirE, Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins. These proteins contain a P-loop motif.	9.51511e-33
CP028478.1\|AYO65930.1\|469164_471444_+\|phage-tail-tape-measure-protein	gnl\|CDD\|273790	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions].	4.08916e-45
CP028478.1\|AYO65924.1\|463897_464077_+\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	5.6831e-12
CP028478.1\|AYO65919.1\|449726_450281_-\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|223735	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only].	2.26306e-80
CP028478.1\|AYO70213.1\|462329_463559_+\|integrase	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	7.87615e-41
CP028478.1\|AYO65922.1\|459892_461032_-\|MexX-family-efflux-pump-subunit	gnl\|CDD\|184990	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA.	2.1537e-173
CP028478.1\|AYO65934.1\|473171_474053_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	2.16618e-157
CP028478.1\|AYO65920.1\|456255_456477_-\|hypothetical-protein	gnl\|CDD\|227920	COG5633, COG5633, Predicted periplasmic lipoprotein [General function prediction only].	0.00120139
CP028478.1\|AYO65932.1\|471848_472814_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|182440	PRK10415, PRK10415, tRNA-dihydrouridine synthase B; Provisional.	0

>CP028478.1|AYO65926.1|466051_466273_+|hypothetical-protein
MRYQAEITIFCEGRDPFSILFNEIFDSKIEAFNHGQKQITDFTSKTEKRVLHIDCDVIEVPEIGNAEILPFKK
>CP028478.1|AYO70214.1|464749_466042_+|P-loop-ATPase
MMSEPVECIPLDKPLPTPGDIYHPDHIDWKRDKVTQEWVFHKAKGTAENLSRLLKAYGVRVRYNELSRDVEISVNGSLPIGDLARNVSLSKIEDICRINDYPYTAAASHLDNLASADSYNPALDWVKSQPWDGTSRLRELFDCLTLADQDKTEISWTLFRKWFFGAIALLSGKTSKFEHVLILVDPMGGLGKTRFFNTLCPKDFQADGVTLNPDDKDSVLQVVSKWLVELGEIGATFSKSDIESLKAFLSKDKDELRPAYARAANRYQRRTAFFGSVNNVQFLMDDTNNRRFWPIQVAAVNYQHSIDMQQVWAEALARINAGETWHLDQQENCVIGEHNDAFRSKDRIEEMILSSYDPGALPSRYVSASEVLNEIGVLNPKQTDTRKASALLRKMFGHKISRGLTVYHMPSAKGFRHLVSVNTEYKEGPF
>CP028478.1|AYO65925.1|464085_464367_+|hypothetical-protein
MKQVTTAEAIRNYNGLLRNPLRQLTVGELTAQRMAVAQSLLQACIREGVNRPWTIVSRHAAMADSLVPFRISDSESWAMYLELKRGVRNEKRA
>CP028478.1|AYO65924.1|463897_464077_+|AlpA-family-phage-regulatory-protein
MEMLTTKQVCALTTLSRVTIWRYEVSGMFPARVQLGPKRVAWHKAEVEAWMKSRQPVQR
>CP028478.1|AYO70213.1|462329_463559_+|integrase
MANDKLSDMKLRALMRADVTKPKTIADGAGLSIRVTPSQKQTGNDDKRPTNNLLWLFRYRNPHKSTNPLTLVLGRYPDLSLSAARVQRDKCKSWLADNLDPKDQYKLTSTETLNPVTVRQALQYWVDNYAVHNRANYQRHLAQLDKHIFPYIGDMPLSLCETKHWLSCFDRTKKKSPVAAGYIFQMCKQALKYCRVRRYAFSNALDDLAIPDVGQKQAKRDRVHSEAELADICNAITSETFFLPYYNALLKTLLVFGARTNEVRLSETKEWDVKTWIWTVPKEHAKGGEKIVRPVPESIRPFILDLIEQHKDTGLLLGELKNPEAVSQWGRSIYKRLGHSEPWTLHDLRRTFSTTLNDMGVAPHIVEGLLGHALGGVMAIYNRSQYLPEKLDALNKWVDKLSDLQKITN
>CP028478.1|AYO65923.1|461410_462061_+|acrEF/envCD-operon-transcriptional-regulator
MARKTKEEAQRTRQLLIESAIQQFALRGVTNTTLTDIADAAGVTRGAVYWHFASKTELFNEMWQQQPPLRDLIQPSQAIEYEHEPLNALRERFIAGLRYIAANPRQRALMQILYQRCEFSSDMLSEYEIRQRIGFNYSLIGGILQCCVRNNILPAETNIEMILIVLHSAFSGLIKNWLLDPQRFDLYQQAPALVDNIMAVVCAARLSGGPALRLVN
>CP028478.1|AYO65922.1|459892_461032_-|MexX-family-efflux-pump-subunit
MTTHARVTLLSGLIISALLLTGCDNSDNQQPHAQAPQVTVHVVNSAPLSVTTELPGRTSAFRVAEVRPQVSGIILKRNFVEGSDVEAGQSLYQIDPATYQAAWNSAKGDEAKAEAAAAIAHLTVKRYVPLLGTKYISQQEYDQAVATARQADADVIATKAAVETARINLAYTKVTSPISGRIGKSSVTEGALVTNGQSDALATVQQLDPIYVDVTESSNDFMRLKQESLQRGGDTKSVELVMENGQAYPLKGSLQFSDVTVDESTGSITLRAIFPNPQHVLLPGMFVRARIDEGVDPQAILVPQQGVTRTPRGDASVMLVNDKNQVETREVVATQAVGDKWLITSGLKPGDKVIVSGLQKVRPGVTVKAEAERAAPAVQ
>CP028478.1|AYO65921.1|456769_459880_-|hydrophobe/amphiphile-efflux-1-family-RND-transporter
MSKFFIHRPVFAWVLAIIMMIAGGLAILQLLIAQYPTIAPPAVAISATYPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFKSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSFLLVAGFISDNPTTTQDDISDYVASNVKDPISRLNGVGDVQLFGAQYAMRVWLDGNLLNKYNLTPVDVINALQVQNDQIAAGQLGGTPALKGQQLNASIIAQTRLKDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVARINGKPASGLGIKLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALVLTPALCATLLKPASAEHHEKKGFFGWFNARFDQSVNHYTNSVSGILRGTGRYLVIYLLIVVGMAVLFMRLPTSFLPDEDQGVFLTMIQLPSGATQERTQKVLDTVTDYYLHNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEARSGDENSVESIIKRATVAFSQIKDAMVFPFNMPAIIELGTATGFDFELIDQGGLGHTALTQARNQLLGMVKQHPDQLVRVRPNGLEDTPQFKLDVDQEKAQALGVSLSDINETISAALGGYYVNDFIDRGRVKKVYVQADAHFRMLPSDINNMYVRSANGEMVPFSAFVTSRWIYGSPRLERYNGLPSMEILGEASPGKSTGEAMALMETLASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGIIEATLEASRMRLRPILMTSLAFILGVMPLVISHGAGSGAQNAVGTGVMGGMLTATLLAIFFVPVFFVVVRRRFTRHAE
>CP028478.1|AYO65920.1|456255_456477_-|hypothetical-protein
MKKYLIVALLASLLAGCAHDSPCVPVYDSQGRLVHTNTCMKGTTEDNWDTAGAIAGGAAAVAGLTLGIVALTR
>CP028478.1|AYO65919.1|449726_450281_-|gamma-carbonic-anhydrase-family-protein
MSAQLRPYKAFFPQIGLRVMIDASSVVIGDVRIADDVSVWPLVAIRGDVNYVSIGQRSNIQDGSVLHVTHKSSYKPEGNPLIIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGVVVGDDVMIGAGSLVPQNKQLESGYLYFGNPVKQIRPLTEAEREGLKYSANNYVKWKNEYLDQDNQIQP
>CP028478.1|AYO65927.1|467005_467917_+|hypothetical-protein
MNDVLSELVRGALEHQGAHIRFDGNGDVNQVIPVEPAVVRYLSLNEVLTPKAGSQTTFNGIIAARSLVAAAGAEIIRIPGPMTQQADIDAEGNRRPLKQQEVPRHYIVVAPGKFAAVADDAEITLSGAPYLVATYEDATAPSYGIGYTLTRQQLKHTFADPDTVLRAVNSAIEQGIARLADSVLLTDLNTKAATLTDATVDAVAKAAAAKGCRWADLSAIAGTSAAGVTLGGDGTLRVCAVKAELTDTIATTIVGDFSRAAVAIDDELRVTAKRINNGAVEIVVWCNAQALVPDSAYFWKYGA
>CP028478.1|AYO65928.1|467919_468234_+|hypothetical-protein
MGWGIRKVAAERAALSGEVLAAIEGAAMYTRHGDAEAPRIIVQPAGYTGFIYSEQAAEKWVRRAFIELTPYQVERAVNYLASLVREHHREHQPKRQRNSWVNRW
>CP028478.1|AYO65929.1|468623_468944_+|hypothetical-protein
MKNNDLYESMKEEARLILSETKRFQTISEKNPICHEAADLLASLRNRLNAFEHMTDEAGRAMRNEAESHASTIERKKWKPSSRISSGERAKRQAVKRGATLIRDAF
>CP028478.1|AYO70215.1|468952_469150_+|hypothetical-protein
MDPQPQTENGLWDSFVELALPRVMVMDTREEMEEQREEIKRQALLLAAAALRAAGEFTLADNLLN
>CP028478.1|AYO65930.1|469164_471444_+|phage-tail-tape-measure-protein
MANKKMNAVITIGGAVSGSLRGAFGTVKKSTVEIGSAITHLSREQRQLNEAMKRYGQNSVMVDRLRGRYDAIVGQVERLRKAQERLNAVERASAANLAKRAELRGQMLDTVALGAAVAAPIKIAADRESHAVGIAKQLQGARDEAGKLTPVFWQMRKAVTDLGHEIPLATNDLYDMAAAGLRMGVASNDILGFTRNTAKLAAALELDPGETAERFAKLGTVFKLSQDQLMGLGDAINYLDDQTTAKGGEIIDFMARVGGSAGLVKITAGQVAAIGTALISMGETAETAGTSTAALFSKLAMGDKNTKAAREAFKELGLSAGQMSKAVQKDAIGAMEMLFDRVRKLPEASRTGVLVDIFGQEHVGKIAKLVTGTKELASALEAVNGEAAKGSVQKEFQNTIGTTNAQMVLLSNRMADVADNIGTVLLPSVNDAASTIGRFTTVVANFAQEHPGVTKAVVGTAVALTSLKVATLAGGYAFTFLKGGALTLAKGLAGARAEMALTATGARLLGASAAVAQGGVIGLGRALVMNPIGAIAAGIAVAGLAIYKNWDMVKAAAIGFGRGMVEGLQPVSDAISTVRQALHPLEPAFVAVGDAVKGVFNWFSDLLTPTKHTADQLKSATDAGQTFGRVVGDAISFVLTPLTALVDGFKWISEHGGQIMNSVGATIDKAKSWLPSWAGGTDDEKEAPKAPAGLVAPPAPAMANRTGSTTVNTNDQYHISVKAEPGMNEDALARKVAETLKRQQAVRGRSMMTDGAYQP
>CP028478.1|AYO65931.1|471527_471824_-|Fis-family-transcriptional-regulator
MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN
>CP028478.1|AYO65932.1|471848_472814_-|tRNA-dihydrouridine-synthase-DusB
MRIGHHQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSVPEEMAAAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDQVKSILTAVVNAVDVPVTLKIRTGWEPEHRNCVEIAQLAEECGIQALTIHGRTRACLFNGDAEYDSIRAVKQKVSIPIIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGQAKGYRIARKHVSWYLQEHAPDDQFRRTFNAIEDASEQLEALEAYFENFA
>CP028478.1|AYO65933.1|472971_473166_-|hypothetical-protein
MRPTGRIFVSSSHQIMPGNERQIALQSTFLATKTAFYIAMRPVYPRKIEKFYDFINGHKLSTTH
>CP028478.1|AYO65934.1|473171_474053_-|50S-ribosomal-protein-L11-methyltransferase
MPWIQLKLNTTGANAEDLSDALMEAGSVSITFQDTHDTPVFEPLPGETRLWGDTDVIGLFDAETDMKAVVAQLEQHPLLGAGFAHKIEQLEDKDWEREWMDNFHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDGLDLNGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAQRNGVSERLELYLPQDQPESMKADVVVANILAGPLRELAPLISVLPVSGGLLGLSGILASQAESVCEAYADLFTLDPVVEKEEWCRITGRKN
>CP028478.1|AYO65935.1|474064_475516_-|sodium/panthothenate-symporter
MQFEVIIPLIAYLVVVFGLSLYAMRKRASGSFLNEYFLGSRSMGGFVLAMTLTATYISASSFIGGPGAAYKYGLGWVLLAMIQLPAIWLSLGVLGKKFAILARRYNAVTLNDMLFARYQSRLLVWLASLSLLVAFVGAMTVQFIGGARLLETAAGIPYDTGLLIFGVSIALYTAYGGFRASVLNDTMQGMVMLIGTIVLLVGVIHAAGGVGHAVETLQSIDVKLVSPQGAEDILSPTFMASFWVLVCFGVIGLPHTAVRCISYKDSKAVHRGIIIGTIVVAILMFGMHLAGALGRAVIPDLTVPDLVIPTLMVKVLPPFAAGIFLAAPMAAIMSTINAQLLQSSATIIKDLYLNWRPDQATNEKRLKRMSAGITLLLGVLLLLAAWRPPEMIIWLNLLAFGGLEAVFLWPLVLGLYWERANAAGALSAMIVGGVLYAVLATLKVQFLGFHPIVPALLLSLLAFVAGNRFGRPAPQSPILTTDK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP028478_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028478_2

4130503-4130642

Orphan

Consensus_repeat	Method
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028478_2

>merge|CP028478|2|4130503-4130642|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAGCCCCAGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACTGAAGCAGCAG

>CP028478|2|2|4130503-4130642|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CCCCAGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTA
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACTGAAGCAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
CP028478.1\|AYO69250.1\|4123116_4123809_+\|DNA-binding-transcriptional-regulator-CsiR	unknown	unknown	gnl\|CDD\|183181
CP028478.1\|AYO69259.1\|4130887_4132111_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
CP028478.1\|AYO69256.1\|4128371_4129427_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
CP028478.1\|AYO69248.1\|4120251_4121535_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236149
CP028478.1\|AYO69254.1\|4126416_4127874_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
CP028478.1\|AYO69255.1\|4127916_4128369_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
CP028478.1\|AYO69258.1\|4130669_4130885_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538
CP028478.1\|AYO69251.1\|4123894_4124293_-\|Crl-family-RNA-polymerase-assembly-factor	unknown	unknown	gnl\|CDD\|182882
CP028478.1\|AYO69260.1\|4132123_4132720_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
CP028478.1\|AYO69267.1\|4137852_4138620_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
CP028478.1\|AYO69249.1\|4121670_4123071_+\|GABA-permease	unknown	unknown	gnl\|CDD\|182297
CP028478.1\|AYO69253.1\|4125700_4126159_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
CP028478.1\|AYO69261.1\|4132726_4133365_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
CP028478.1\|AYO69264.1\|4135386_4136730_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	unknown	unknown	gnl\|CDD\|235426
CP028478.1\|AYO69263.1\|4134144_4135383_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
CP028478.1\|AYO69257.1\|4129586_4130447_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176522
CP028478.1\|AYO69262.1\|4133357_4134152_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-C	unknown	unknown	gnl\|CDD\|235423
CP028478.1\|AYO69265.1\|4136686_4136896_+\|hypothetical-protein	unknown	unknown	unknown
CP028478.1\|AYO69252.1\|4124350_4125595_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
CP028478.1\|AYO69266.1\|4137141_4137882_+\|transpeptidase	unknown	unknown	gnl\|CDD\|225577

Protein	Function_ID	Function_description	E-value
CP028478.1\|AYO69250.1\|4123116_4123809_+\|DNA-binding-transcriptional-regulator-CsiR	gnl\|CDD\|183181	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional.	8.2323e-151
CP028478.1\|AYO69259.1\|4130887_4132111_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
CP028478.1\|AYO69256.1\|4128371_4129427_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
CP028478.1\|AYO69248.1\|4120251_4121535_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236149	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase.	0
CP028478.1\|AYO69254.1\|4126416_4127874_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
CP028478.1\|AYO69255.1\|4127916_4128369_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	3.92264e-85
CP028478.1\|AYO69258.1\|4130669_4130885_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	4.00668e-29
CP028478.1\|AYO69251.1\|4123894_4124293_-\|Crl-family-RNA-polymerase-assembly-factor	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	3.74492e-83
CP028478.1\|AYO69260.1\|4132123_4132720_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.25239e-127
CP028478.1\|AYO69249.1\|4121670_4123071_+\|GABA-permease	gnl\|CDD\|182297	PRK10197, PRK10197, GABA permease.	0
CP028478.1\|AYO69253.1\|4125700_4126159_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.19173e-113
CP028478.1\|AYO69261.1\|4132726_4133365_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	1.0782e-142
CP028478.1\|AYO69264.1\|4135386_4136730_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
CP028478.1\|AYO69263.1\|4134144_4135383_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
CP028478.1\|AYO69257.1\|4129586_4130447_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176522	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.	5.84196e-129
CP028478.1\|AYO69262.1\|4133357_4134152_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.16359e-153
CP028478.1\|AYO69267.1\|4137852_4138620_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.08772e-144
CP028478.1\|AYO69252.1\|4124350_4125595_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
CP028478.1\|AYO69266.1\|4137141_4137882_+\|transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.01465e-109

>CP028478.1|AYO69257.1|4129586_4130447_+|glycerophosphodiester-phosphodiesterase
MKKILTALCLLATAGAWAAPQLIAHRGGTGDAPENTLPAIKLALENNAEAIWVTVQLSRDGVPVLYRSSDLSALTNSEGKVSSLTAAELAKVDAGWKWGDDSHPWRGKQATIPTLQSVLQQWPQTFFYIDIKSPDADPTVMGQRLLEVLKTTDSLDRVRVYSTEDRYIAALPPAIPRFVTRSETRTRLANISLSHQCQPASQRDGEQWYGLELKRKVEVVEKFTLGEGISPATLTWDKEAMDCFRSQDKAHIIFFGINSAEDYRTAIELGADGVMVDSPAQAKSWQ
>CP028478.1|AYO69256.1|4128371_4129427_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVSDSEHCHGSATLIAQEIRQTIERELRLTASAGVAPVKFLAKIASDMNKPNGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGRILWERSHGIDEREIHNDRQRKSVGVERTLAEDIHEWPECEAIIENLYPELERRLAKVKPDLLIARQGIKLKFNDFQLTTQEHVWPRLNKEDLIATAHKAWDERRGGRGVRLVGLHVTLLDPQLERQLLLGI
>CP028478.1|AYO69255.1|4127916_4128369_-|GNAT-family-N-acetyltransferase
MHIRAYRDSDLPLLCQIFLRAVRETASRDYTPGQIAAWAQVDETRWRQKLADSIGLVAVVNSQPVGFITAIGTHIDLLFVSPDRARQGIGGALIEALCVQYPAQILTVDASITAKPCFTAHGFKVVAEQRVAARGEWFINYRMEKRVALR
>CP028478.1|AYO69254.1|4126416_4127874_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLHAERDQVGNILIRKGATAGMENRKPVALQAHLDMVPQKNNDTVHDFVKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVAHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGCAGGIDFTSNLALTREAIPAGFQSFKVTLKGLKGGHSGGDIHLGLGNANKLLSRFLAGHADELDLRLVDFNGGTLRNAIPREAYATVAVAADKADALKALVNTYQALLKNELEAKEKNLVVLVEAVDNDKAALTQASRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>CP028478.1|AYO69253.1|4125700_4126159_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPIAGR
>CP028478.1|AYO69252.1|4124350_4125595_-|esterase-FrsA
MSQANLSETLFKPRFKHPETSTLVRRFSAGKPQAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIFEWAKEAMQWQQKAGQEADPLLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTIPGGSPITGFLHMPKGEGPFPTVLMCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLGPVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLLGRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVYRNFDHALRQIARWINHRFG
>CP028478.1|AYO69251.1|4123894_4124293_-|Crl-family-RNA-polymerase-assembly-factor
MTLPSGHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIGDPEVSDRLEKTLREFHERAAALLTTFNLKLEPADDFSEPVRLRA
>CP028478.1|AYO69250.1|4123116_4123809_+|DNA-binding-transcriptional-regulator-CsiR
MTAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYALGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLDIFDARANMEAMLVRLAIERGGDEWEAELLARAHLLNKLESCEASEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVEMLEDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG
>CP028478.1|AYO69249.1|4121670_4123071_+|GABA-permease
MGQLSQSQDLGAGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAIILHSWVPGVPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIVLGAVAITGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFIVVALIPWNMPGLKSIGSYRSVLELLHIPYAKLIMDGVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGRTNRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILQAQGGEIRLRMWLYPYLTWLVIAFITFVLVVMLFRPAQQLEVISTGLLALGIICTVPIMSRWKKLVLWQKLPLQNTR
>CP028478.1|AYO69248.1|4120251_4121535_+|4-aminobutyrate--2-oxoglutarate-transaminase
MNSNKAMMARRSDAVPRGVGQIHPIFAERAENCRVWDVEGREYLDFAGGIAVLNTGHLHPQIVAAVEDQLKKLSHTCFQVLAYEPYLALCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATGRSGAIAFTGAYHGRTHYTLSLTGKVNPYSAGMGLMPGHVYRALYPCALHGVSDDEAIASIHRIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLQIFEQENLLEKANQLGDTLRQGLLAIAEDHPEIGDVRGLGAMIAIELFEEGDHSRPNARLTADIVARARDKGLILLSCGPYYNVLRILVPLTIEEAQIEQGLKIIADCFSEAKQA
>CP028478.1|AYO69258.1|4130669_4130885_-|(Na+)-NQR-maturation-NqrM
MLTVFIATFVIFALVIFGMSLGYLVKRKSIQGSCGGISALGLEKVCDCPEPCDARKKRLAREAQRQQRRIL
>CP028478.1|AYO69259.1|4130887_4132111_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MEIILGVVMFTLIVLVLSGLILAARSKLVNAGDVVIEINNEADKQIRTPAGDKLLNTLSSNGIFVSSACGGGGSCGQCRVTVKEGGGDILPTELSHITKRDAKAGCRLACQVAVKQNMKIELPEEIFGVKKWECEVISNDNKATFIKELKLRIPEGEVVPFRAGGYIQIECPPHKVAYADFDVPDEYRSDWDKFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPPKVPDAPPGIMSSYIWSLKPGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDEEFEQLARDNPNFTFHVALSDPLPEDNWTGHTGFIHNVLYENYLRDHPAPEDCEFYMCGPPVMNAAVIKMLKDLGVEDENILLDDFGG
>CP028478.1|AYO69260.1|4132123_4132720_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MAHYISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRDGALVEGVDLSFLNFITFIGVIAALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGIGWMLAIVAMAGIREKMKYANVPAGLRGLGITFITTGLMALGFMSFSGVQL
>CP028478.1|AYO69261.1|4132726_4133365_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MAEQSDMKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>CP028478.1|AYO69262.1|4133357_4134152_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-C
MAEKKSNDSIGKTLLVVLVLCLVCSIVVAGSAVGLKSRQQAQRALDKQRNILAVSGLMHPGMDADAVADTFAARITPRLVNLATGELLEKDPGKFNQAQALKDPQQSMALDASQDPAGIKRRSNLAEIYLVRDAQQKIEQVVLPIYGNGLWSMMYAFVALDVDGRTVKGITYYDQGETPGLGGEVENPNWRQQFVGKQVLDDNGMPALKVVKGGARADDLHAVDGLSGATLTSNGVQHSFDFWMGELGFGPFLKKVREGELNNG
>CP028478.1|AYO69263.1|4134144_4135383_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKHLIEKLEPHFTHGGKLEKYYPLYEAAATIFYTPGQVTRGAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTIPALHKLYGAEQLQQAIANNWHYSVAQWLGVSFSADAGWLSMMTLGAVFFLPIYLTVFIVGGFWEVLFAIVRKHEINEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGFSGATPLSQWASGGGEALVNVATGVPVSWMDAFLGNIPGSIGEVSTLMIFIGGAIILFGRVASWRIVAGVMIGMIATATLFNVIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKSRG
>CP028478.1|AYO69264.1|4135386_4136730_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A
MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGERRVLQSVVIDIEGNDAVAFTRYAADALAELPRDTVQQQLLASGQWTALRTRPFSKTPLPGSTPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSGGKLGGHPLGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGKLFLDGELYCERIIALGGPQVTSPRLVKTTLGASLEDLLAGELQEGENRVISGSVLSGARAHGPHAFLGRFHLQVSVVKEGREKELFGWVMPGKEKFSITRTTLGHFFKRKRFHFSTDTNGGERAMVPIGNYERVMPLDILPTILLRDLLAGDTDSAQALGCLELDEEDLALCTYVCPGKYEYGPALRSVLTRIEQEG
>CP028478.1|AYO69265.1|4136686_4136896_+|hypothetical-protein
MPAMGKSSPFVILIISLAGIRNLNPDAGQGQLIDRMAEKKGRNGASSAQDGREASFLTLMMNRRKCNIS
>CP028478.1|AYO69266.1|4137141_4137882_+|transpeptidase
MRKIALFIAMLLLPCVSFAGLLSSNSPTTPVSKEYKQQLMGSPVYIEIFKEERMLDLYVKMGETYQLLDSYRICNYSGGLGPKQRQGDFKSPEGFYNVTRSQLKPDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSVGCYAMTDSGIDEIFQFVTGALVFGQPSVQVSIYPFRMTNANMERHKYSYYADFWKQLKPGYDYFQQTHKPPVVSVTDGRYVVSKPLSHEVVQPQLASNYTLPETK
>CP028478.1|AYO69267.1|4137852_4138620_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFQSPIAKLVQDYPIKSCSVVAHIRQANRGRVALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAFCSTNLHWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWALFCLGERVV

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Crispr_ID: CP028478_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028478_3

4347436-4347530

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028478_3

>merge|CP028478|3|4347436-4347530|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>CP028478|3|3|4347436-4347530|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
CP028478.1\|AYO69443.1\|4353491_4354778_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
CP028478.1\|AYO70388.1\|4345765_4345954_+\|hypothetical-protein	unknown	unknown	unknown
CP028478.1\|AYO69448.1\|4358075_4358555_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
CP028478.1\|AYO69447.1\|4356975_4357824_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
CP028478.1\|AYO69446.1\|4356593_4356971_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
CP028478.1\|AYO69437.1\|4345263_4345803_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
CP028478.1\|AYO69435.1\|4341610_4344517_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
CP028478.1\|AYO69438.1\|4345982_4347347_-\|malate-permease	unknown	unknown	gnl\|CDD\|377030
CP028478.1\|AYO69441.1\|4350017_4350845_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
CP028478.1\|AYO69436.1\|4344529_4345189_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
CP028478.1\|AYO69431.1\|4334834_4336544_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
CP028478.1\|AYO69442.1\|4351088_4353437_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
CP028478.1\|AYO69433.1\|4338194_4338890_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
CP028478.1\|AYO69444.1\|4354783_4355773_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
CP028478.1\|AYO69445.1\|4355769_4356591_+\|ribosomal-RNA-small-subunit-methyltransferase-A	unknown	unknown	gnl\|CDD\|234708
CP028478.1\|AYO69430.1\|4333651_4334497_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
CP028478.1\|AYO69440.1\|4349286_4349985_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
CP028478.1\|AYO69434.1\|4339065_4341423_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
CP028478.1\|AYO69432.1\|4336554_4338057_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
CP028478.1\|AYO69439.1\|4347671_4349297_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827

Protein	Function_ID	Function_description	E-value
CP028478.1\|AYO69443.1\|4353491_4354778_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
CP028478.1\|AYO69442.1\|4351088_4353437_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
CP028478.1\|AYO69448.1\|4358075_4358555_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
CP028478.1\|AYO69447.1\|4356975_4357824_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
CP028478.1\|AYO69446.1\|4356593_4356971_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
CP028478.1\|AYO69437.1\|4345263_4345803_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
CP028478.1\|AYO69435.1\|4341610_4344517_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
CP028478.1\|AYO69438.1\|4345982_4347347_-\|malate-permease	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
CP028478.1\|AYO69441.1\|4350017_4350845_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
CP028478.1\|AYO69436.1\|4344529_4345189_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.90078e-161
CP028478.1\|AYO69431.1\|4334834_4336544_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
CP028478.1\|AYO69433.1\|4338194_4338890_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
CP028478.1\|AYO69444.1\|4354783_4355773_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
CP028478.1\|AYO69445.1\|4355769_4356591_+\|ribosomal-RNA-small-subunit-methyltransferase-A	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
CP028478.1\|AYO69430.1\|4333651_4334497_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
CP028478.1\|AYO69439.1\|4347671_4349297_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
CP028478.1\|AYO69434.1\|4339065_4341423_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
CP028478.1\|AYO69432.1\|4336554_4338057_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
CP028478.1\|AYO69440.1\|4349286_4349985_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66

>CP028478.1|AYO69438.1|4345982_4347347_-|malate-permease
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>CP028478.1|AYO70388.1|4345765_4345954_+|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKYDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFCSGK
>CP028478.1|AYO69437.1|4345263_4345803_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>CP028478.1|AYO69436.1|4344529_4345189_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>CP028478.1|AYO69435.1|4341610_4344517_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>CP028478.1|AYO69434.1|4339065_4341423_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGTEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>CP028478.1|AYO69433.1|4338194_4338890_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQRIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>CP028478.1|AYO69432.1|4336554_4338057_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>CP028478.1|AYO69431.1|4334834_4336544_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLPQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>CP028478.1|AYO69430.1|4333651_4334497_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>CP028478.1|AYO69439.1|4347671_4349297_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>CP028478.1|AYO69440.1|4349286_4349985_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>CP028478.1|AYO69441.1|4350017_4350845_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>CP028478.1|AYO69442.1|4351088_4353437_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>CP028478.1|AYO69443.1|4353491_4354778_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>CP028478.1|AYO69444.1|4354783_4355773_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIGQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>CP028478.1|AYO69445.1|4355769_4356591_+|ribosomal-RNA-small-subunit-methyltransferase-A
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>CP028478.1|AYO69446.1|4356593_4356971_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>CP028478.1|AYO69447.1|4356975_4357824_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>CP028478.1|AYO69448.1|4358075_4358555_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

462329 : 507301

Pseudomonas_phage(33.33%)

tail,tRNA,protease,integrase

attL 460655:460670|attR 478976:478991

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
460655:460670	attL	NA	NA	NA	NA
AYO70213.1\|462329_463559_+\|integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.2e-146	60.6
AYO65924.1\|463897_464077_+	AlpA family phage regulatory protein	NA	NA	NA	NA
AYO65925.1\|464085_464367_+	hypothetical protein	NA	NA	NA	NA
AYO70214.1\|464749_466042_+	P-loop ATPase	A0A1B0Z1F4	Shewanella_phage	4.7e-77	40.8
AYO65926.1\|466051_466273_+	hypothetical protein	NA	NA	NA	NA
AYO65927.1\|467005_467917_+	hypothetical protein	NA	NA	NA	NA
AYO65928.1\|467919_468234_+	hypothetical protein	NA	NA	NA	NA
AYO65929.1\|468623_468944_+	hypothetical protein	NA	NA	NA	NA
AYO70215.1\|468952_469150_+	hypothetical protein	NA	NA	NA	NA
AYO65930.1\|469164_471444_+\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	1.1e-142	40.8
AYO65931.1\|471527_471824_-	Fis family transcriptional regulator	NA	NA	NA	NA
AYO65932.1\|471848_472814_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
AYO65933.1\|472971_473166_-	hypothetical protein	NA	NA	NA	NA
AYO65934.1\|473171_474053_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
AYO65935.1\|474064_475516_-	sodium/panthothenate symporter	NA	NA	NA	NA
AYO65936.1\|475505_475748_-	hypothetical protein	NA	NA	NA	NA
AYO65937.1\|475858_477208_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
AYO65938.1\|477218_477686_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
AYO65939.1\|477708_478161_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
AYO65940.1\|478384_478993_-	sulfoxide reductase heme-binding subunit YedZ	NA	NA	NA	NA
478976:478991	attR	NA	NA	NA	NA
AYO65941.1\|478992_479994_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
AYO65942.1\|480223_480415_+	hypothetical protein	NA	NA	NA	NA
AYO65943.1\|480494_482435_+	RNase E specificity factor CsrD	NA	NA	NA	NA
AYO65944.1\|482556_482763_-	hypothetical protein	NA	NA	NA	NA
AYO65945.1\|482740_483784_+	rod shape-determining protein	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
AYO65946.1\|483854_484847_+	rod shape-determining protein MreC	NA	NA	NA	NA
AYO65947.1\|484846_485335_+	rod shape-determining protein MreD	NA	NA	NA	NA
AYO65948.1\|485342_485924_+	septum formation inhibitor Maf	NA	NA	NA	NA
AYO65949.1\|485926_487396_+	ribonuclease G	NA	NA	NA	NA
AYO65950.1\|487433_491231_+	AsmA2 domain-containing protein	NA	NA	NA	NA
AYO65951.1\|491319_492765_+\|protease	metalloprotease TldD	NA	NA	NA	NA
AYO65952.1\|492800_493730_-	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
AYO65953.1\|493861_494065_+	protein AaeX	NA	NA	NA	NA
AYO65954.1\|494072_495005_+	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
AYO65955.1\|495010_496978_+	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
AYO65956.1\|497057_497333_+	hypothetical protein	NA	NA	NA	NA
AYO65957.1\|497383_497650_-	DUF1471 domain-containing protein	NA	NA	NA	NA
AYO65958.1\|497748_498012_-	DUF1471 domain-containing protein	NA	NA	NA	NA
AYO65959.1\|498387_498858_-	arginine repressor	NA	NA	NA	NA
AYO65960.1\|499272_500211_+	malate dehydrogenase	NA	NA	NA	NA
AYO65961.1\|500347_501406_-\|protease	serine endoprotease DegS	NA	NA	NA	NA
AYO65962.1\|501493_502861_-\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	6.0e-22	25.3
AYO70216.1\|503034_503433_-	DUF1043 domain-containing protein	NA	NA	NA	NA
AYO65963.1\|503623_504751_+	cell division protein ZapE	NA	NA	NA	NA
AYO65964.1\|505016_505445_+	50S ribosomal protein L13	NA	NA	NA	NA
AYO65965.1\|505460_505853_+	30S ribosomal protein S9	NA	NA	NA	NA
AYO65966.1\|505962_506166_-	hypothetical protein	NA	NA	NA	NA
AYO65967.1\|506164_506803_+	stringent starvation protein A	NA	NA	NA	NA
AYO65968.1\|506806_507301_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.5e-26	54.8

DBSCAN-SWA_2

1310678 : 1326749

Enterobacter_phage(31.82%)

terminase,integrase

attL 1302218:1302232|attR 1316631:1316645

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1302218:1302232	attL	NA	NA	NA	NA
AYO66725.1\|1310678_1312145_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
AYO66726.1\|1312212_1313790_+	GMP synthase (glutamine-hydrolyzing)	NA	NA	NA	NA
AYO66727.1\|1313981_1315232_+\|integrase	integrase	A0A1X9TCT6	Enterobacter_phage	4.0e-206	85.1
AYO66728.1\|1315248_1315440_-	hypothetical protein	NA	NA	NA	NA
AYO66729.1\|1315436_1316030_-	adenine methylase	T1SA14	Salmonella_phage	1.9e-110	92.9
AYO66730.1\|1316026_1316683_-	morphogenetic protein	H2BDG4	Pseudomonas_virus	4.6e-44	46.6
1316631:1316645	attR	NA	NA	NA	NA
AYO66731.1\|1316679_1316838_-	DUF1317 domain-containing protein	T1SAR0	Salmonella_phage	8.7e-18	80.8
AYO66732.1\|1316830_1317124_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	4.0e-32	71.1
AYO66733.1\|1317233_1317482_-	transcriptional regulator	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	4.9e-31	76.8
AYO66734.1\|1317530_1318466_-	recombinase RecT	A0A193GYL3	Enterobacter_phage	2.0e-141	76.7
AYO66735.1\|1318462_1319284_-	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	3.6e-131	80.6
AYO66736.1\|1319280_1319580_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	9.4e-21	55.6
AYO66737.1\|1319946_1320528_-	XRE family transcriptional regulator	Q858D7	Salmonella_phage	7.1e-65	64.3
AYO66738.1\|1320682_1320916_+	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
AYO66739.1\|1321062_1321272_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.0e-26	79.7
AYO66740.1\|1321271_1322039_+	primosomal protein	A0A193GZ86	Enterobacter_phage	2.0e-139	91.0
AYO66741.1\|1322035_1322821_+	replication protein	A0A193GYX1	Enterobacter_phage	3.7e-133	87.7
AYO66742.1\|1322940_1323285_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	6.9e-52	85.1
AYO66743.1\|1323477_1323891_+	hypothetical protein	R9TME7	Aeromonas_phage	4.9e-12	37.7
AYO66744.1\|1323887_1324088_+	hypothetical protein	A0A1U8QWK2	Salmonella_phage	1.4e-09	60.0
AYO66745.1\|1324696_1325161_+	hypothetical protein	A0A248SKW5	Klebsiella_phage	5.7e-09	75.0
AYO66746.1\|1325326_1325665_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	3.2e-49	85.5
AYO66747.1\|1325741_1326071_+	hypothetical protein	K7PGV5	Enterobacterial_phage	7.9e-29	57.0
AYO66748.1\|1326128_1326749_+\|terminase	terminase small subunit	G9L6B7	Escherichia_phage	7.3e-76	72.2

DBSCAN-SWA_3

1330050 : 1355062

Salmonella_phage(40.91%)

tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYO66752.1\|1330050_1330257_+	hypothetical protein	T1SA67	Salmonella_phage	4.8e-08	88.2
AYO66753.1\|1330271_1331954_+\|tail	phage tail protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	2.3e-265	84.8
AYO66754.1\|1331950_1332247_+	hypothetical protein	T1SBI9	Salmonella_phage	9.6e-34	70.4
AYO66755.1\|1332249_1332933_+	peptidase	T1SAP9	Salmonella_phage	7.8e-63	75.5
AYO66756.1\|1332947_1333934_+	hypothetical protein	A0A193GZ49	Enterobacter_phage	1.9e-179	93.9
AYO66757.1\|1333987_1334425_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	1.3e-66	91.7
AYO66758.1\|1334435_1334777_+	hypothetical protein	G9L6C7	Escherichia_phage	4.0e-36	70.8
AYO66759.1\|1334827_1335151_+	hypothetical protein	G9L6C8	Escherichia_phage	3.1e-46	85.0
AYO66760.1\|1335150_1335756_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	2.5e-89	79.0
AYO66761.1\|1335755_1338233_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	84.5
AYO66762.1\|1338232_1338697_+	hypothetical protein	Q858G2	Salmonella_phage	3.8e-69	80.5
AYO66763.1\|1338696_1339236_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	5.6e-72	79.5
AYO66764.1\|1339246_1341868_+	Lytic transglycosylase, catalytic	T1SBJ1	Salmonella_phage	1.6e-55	53.1
AYO66765.1\|1341869_1343576_+	hypothetical protein	NA	NA	NA	NA
AYO66766.1\|1343575_1346122_+	hypothetical protein	W6MWW8	Pseudomonas_phage	1.4e-210	45.8
AYO66767.1\|1346123_1346495_+	hypothetical protein	NA	NA	NA	NA
AYO66768.1\|1346541_1346919_-	hypothetical protein	NA	NA	NA	NA
AYO70244.1\|1346915_1347128_-	hypothetical protein	NA	NA	NA	NA
AYO66769.1\|1347370_1348069_-	anti-repressor protein	G9L6E2	Escherichia_phage	4.8e-76	61.6
AYO70245.1\|1348385_1348682_-	hypothetical protein	A0A0F6R8M4	Escherichia_coli_O157_typing_phage	6.2e-25	65.1
AYO66770.1\|1348838_1351169_+	hypothetical protein	A0A249Y258	Klebsiella_phage	1.9e-201	60.1
AYO66771.1\|1351176_1351584_+	hypothetical protein	T1SA79	Salmonella_phage	1.4e-54	82.7
AYO66772.1\|1351570_1351876_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	9.5e-37	78.4
AYO66773.1\|1351865_1352495_+	endolysin	Q858F0	Salmonella_phage	1.4e-90	76.9
AYO66774.1\|1352491_1352974_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	1.1e-60	80.0
AYO66775.1\|1353193_1355062_-	phosphatase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6

DBSCAN-SWA_4

1439255 : 1502995

Klebsiella_phage(28.89%)

tail,holin,integrase,portal,head,tRNA,protease

attL 1462261:1462284|attR 1501955:1501978

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYO66852.1\|1439255_1440674_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
AYO66853.1\|1440725_1441118_-	hypothetical protein	NA	NA	NA	NA
AYO66854.1\|1441121_1441475_-	hypothetical protein	NA	NA	NA	NA
AYO66855.1\|1442096_1444268_+	hypothetical protein	NA	NA	NA	NA
AYO66856.1\|1444316_1445519_-	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA
AYO70248.1\|1445865_1447107_+	divalent metal cation transporter	NA	NA	NA	NA
AYO66857.1\|1447164_1447524_-	DUF2502 domain-containing protein	NA	NA	NA	NA
AYO66858.1\|1447654_1448620_-	L-glyceraldehyde 3-phosphate reductase	NA	NA	NA	NA
AYO70249.1\|1448826_1450488_+	indolepyruvate decarboxylase	NA	NA	NA	NA
AYO66859.1\|1450484_1451720_-	ion channel protein	NA	NA	NA	NA
AYO66860.1\|1451983_1452949_+	glucokinase	NA	NA	NA	NA
AYO70250.1\|1453002_1453740_-	DNA-binding response regulator	A0A2R2ZGH8	Clostridioides_phage	1.5e-14	26.3
AYO66861.1\|1453751_1455449_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.7e-47	28.5
AYO66862.1\|1455557_1455743_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA
AYO66863.1\|1455831_1457046_+	alanine transaminase	NA	NA	NA	NA
AYO70251.1\|1457116_1457188_-	membrane protein YpdK	NA	NA	NA	NA
AYO66864.1\|1457526_1458723_-	cyanate transporter	NA	NA	NA	NA
AYO66865.1\|1458719_1459178_-	nucleoside deaminase	A0A0B5J096	Pandoravirus	5.5e-12	33.1
AYO66866.1\|1459310_1460219_+	transcriptional regulator CynR	A0A2P0ZL89	Lactobacillus_phage	3.9e-09	23.8
AYO66867.1\|1460228_1461110_-	hypothetical protein	A0A2H4JEC4	uncultured_Caudovirales_phage	1.5e-05	56.8
AYO66868.1\|1461477_1461960_-	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
1462261:1462284	attL	NA	NA	NA	NA
AYO66869.1\|1462478_1463645_+\|integrase	integrase	A0A2R2Z2Y0	Escherichia_phage	7.8e-204	86.6
AYO66870.1\|1463757_1464129_+	hypothetical protein	NA	NA	NA	NA
AYO66871.1\|1464134_1464467_+	hypothetical protein	A0A0P0IE45	Acinetobacter_phage	2.8e-05	33.3
AYO66872.1\|1464553_1464808_-	hypothetical protein	G3CFG7	Escherichia_phage	1.6e-13	61.8
AYO66873.1\|1464743_1465265_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	3.2e-40	77.6
AYO66874.1\|1465257_1465458_-	hypothetical protein	A0A1U8QWK2	Salmonella_phage	7.9e-08	52.5
AYO66875.1\|1465454_1465694_-	hypothetical protein	A0A2R2Z309	Escherichia_phage	3.2e-32	86.1
AYO66876.1\|1465686_1465890_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	1.5e-30	94.0
AYO66877.1\|1465886_1466672_-	hypothetical protein	C7BGF1	Burkholderia_phage	1.8e-63	53.7
AYO66878.1\|1466671_1466971_-	hypothetical protein	NA	NA	NA	NA
AYO66879.1\|1467359_1468004_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	8.2e-38	40.7
AYO66880.1\|1468098_1468308_+	cell division protein	NA	NA	NA	NA
AYO66881.1\|1468333_1468795_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
AYO66882.1\|1469032_1469212_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.6e-15	73.1
AYO66883.1\|1469201_1470155_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	2.8e-90	69.3
AYO66884.1\|1470151_1470961_+	DNA methylase	A0A1C9II58	Salmonella_phage	3.2e-108	68.5
AYO66885.1\|1470970_1471348_+	hypothetical protein	A0A1C9IIA0	Salmonella_phage	3.3e-47	72.8
AYO66886.1\|1471360_1472341_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.1e-134	67.2
AYO66887.1\|1472354_1472933_+	DUF1133 domain-containing protein	A0A0U2S606	Escherichia_phage	7.6e-51	57.2
AYO66888.1\|1473152_1473578_+	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	2.5e-59	83.0
AYO66889.1\|1473574_1473730_+	DUF3927 domain-containing protein	A0A0A0YRI9	Escherichia_phage	2.5e-09	68.8
AYO66890.1\|1473894_1474119_+	hypothetical protein	NA	NA	NA	NA
AYO66891.1\|1474163_1474622_+	hypothetical protein	G8C7V8	Escherichia_phage	4.9e-45	72.3
AYO66892.1\|1474608_1474890_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.3e-32	73.1
AYO66893.1\|1474889_1475519_+	endolysin	F1C591	Cronobacter_phage	2.2e-88	75.8
AYO66894.1\|1475521_1475797_+	hypothetical protein	G8C7W1	Escherichia_phage	6.0e-06	37.1
AYO66895.1\|1475747_1475939_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	2.9e-23	94.6
AYO66896.1\|1476026_1476272_+	DUF2560 domain-containing protein	A0A286N2R1	Klebsiella_phage	1.6e-31	92.6
AYO66897.1\|1476343_1476547_+	DUF551 domain-containing protein	NA	NA	NA	NA
AYO66898.1\|1476629_1476863_+	hypothetical protein	NA	NA	NA	NA
AYO66899.1\|1479777_1480971_+\|portal	phage portal protein	Q8SBI0	Shigella_phage	7.9e-204	85.6
AYO66900.1\|1480963_1481560_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	3.2e-89	82.5
AYO66901.1\|1483264_1483462_+	hypothetical protein	A0A286S2A5	Klebsiella_phage	2.4e-25	96.9
AYO66902.1\|1485282_1485666_+\|tail	phage tail protein	A0A286S1N4	Klebsiella_phage	1.4e-53	86.3
AYO66903.1\|1485668_1485932_+\|tail	phage tail protein	A0A286S1P2	Klebsiella_phage	3.0e-39	91.9
AYO66904.1\|1486416_1488951_+\|tail	phage tail tape measure protein	A0A286S1S3	Klebsiella_phage	0.0e+00	74.9
AYO66905.1\|1488950_1489430_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.7e-93	98.7
AYO66906.1\|1489416_1489899_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	5.7e-84	96.9
AYO66907.1\|1489908_1490289_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	4.6e-73	100.0
AYO66908.1\|1490285_1493354_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	97.7
AYO66909.1\|1493430_1496385_+	hypothetical protein	A0A286S1P0	Klebsiella_phage	2.7e-43	65.5
AYO66910.1\|1496388_1497120_+	hypothetical protein	NA	NA	NA	NA
AYO66911.1\|1497116_1497311_+	hypothetical protein	NA	NA	NA	NA
AYO70252.1\|1497391_1500526_-	SGNH/GDSL hydrolase family protein	A0A1I9SEN3	Klebsiella_phage	9.3e-103	32.0
AYO66912.1\|1500635_1501187_+	DNA-invertase	A0A286S1P7	Klebsiella_phage	1.6e-87	91.2
AYO66913.1\|1501292_1501532_+	DNA polymerase V	I6PD82	Cronobacter_phage	1.5e-21	55.7
AYO66914.1\|1501488_1501860_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.2e-25	50.9
AYO66915.1\|1502065_1502995_-	hypothetical protein	E7DYY8	Enterobacteria_phage	4.4e-133	81.1
1501955:1501978	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2650350 : 2661237

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYO67941.1\|2650350_2653458_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
AYO67942.1\|2653512_2654778_+	MFS transporter	NA	NA	NA	NA
AYO67943.1\|2654808_2655897_-	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	5.2e-210	99.7
AYO67944.1\|2655983_2656244_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
AYO67945.1\|2656541_2657402_+	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
AYO67946.1\|2657422_2658184_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AYO67947.1\|2658444_2659347_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
AYO67948.1\|2659358_2660624_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.9e-233	99.5
AYO67949.1\|2660616_2661237_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_6

3053350 : 3094152

Enterobacteria_phage(54.55%)

tail,integrase,portal,plate,terminase,capsid

attL 3053238:3053255|attR 3090418:3090435

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3053238:3053255	attL	NA	NA	NA	NA
AYO68306.1\|3053350_3053602_-	hypothetical protein	A0A2I8TV89	Erwinia_phage	3.4e-08	49.2
AYO68307.1\|3053645_3054785_-	phage late control D family protein	B9A7A9	Serratia_phage	9.4e-146	72.3
AYO68308.1\|3054939_3056112_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	5.0e-158	70.7
AYO68309.1\|3056111_3056627_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.2e-57	61.2
AYO68310.1\|3056672_3056990_+\|tail	phage tail protein	B9A7B2	Serratia_phage	1.0e-17	54.8
AYO70328.1\|3056989_3057148_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	3.5e-11	63.3
AYO68311.1\|3057134_3060110_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	4.0e-220	46.5
AYO68312.1\|3060125_3060599_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	6.6e-53	66.9
AYO68313.1\|3061062_3061725_-	hypothetical protein	NA	NA	NA	NA
AYO68314.1\|3061742_3062966_-	DUF262 domain-containing protein	A0A1V0S9I8	Catovirus	7.8e-05	27.5
AYO68315.1\|3063565_3064663_-\|tail	phage tail protein	G4KKN6	Yersinia_phage	5.2e-08	47.8
AYO68316.1\|3064662_3064875_-	hypothetical protein	NA	NA	NA	NA
AYO68317.1\|3064871_3067898_-\|tail	phage tail protein I	D5LGZ2	Escherichia_phage	6.4e-24	40.7
AYO68318.1\|3067887_3068811_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	7.6e-53	43.6
AYO68319.1\|3068812_3069163_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	1.8e-23	58.2
AYO68320.1\|3069159_3069747_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	6.9e-60	60.5
AYO68321.1\|3069743_3070379_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	4.6e-57	51.9
AYO68322.1\|3070375_3070843_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	4.5e-46	58.8
AYO70329.1\|3071024_3071354_-	DUF2570 domain-containing protein	NA	NA	NA	NA
AYO68323.1\|3071365_3071911_-	lysozyme	Q1I0Z1	Pasteurella_virus	6.3e-31	43.0
AYO68324.1\|3071907_3072192_-\|tail	phage tail protein	NA	NA	NA	NA
AYO68325.1\|3072182_3072383_-\|tail	phage tail protein	A0A0A7NV57	Enterobacteria_phage	1.6e-16	63.1
AYO68326.1\|3072382_3072898_-\|capsid	capsid assembly protein	A0A0A7NPU2	Enterobacteria_phage	2.7e-39	48.8
AYO68327.1\|3073010_3073868_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	2.8e-70	61.3
AYO68328.1\|3073917_3074952_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	3.6e-96	50.0
AYO68329.1\|3074961_3075801_-\|capsid	phage capsid protein	A0A0A7NRY7	Enterobacteria_phage	4.3e-95	66.3
AYO68330.1\|3075957_3077685_+	oxidoreductase	A0A0A7NV54	Enterobacteria_phage	1.0e-228	67.1
AYO68331.1\|3077678_3078740_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	9.1e-143	68.1
AYO68332.1\|3079588_3080380_+	hypothetical protein	NA	NA	NA	NA
AYO68333.1\|3080379_3082650_+	DNA helicase UvrD	NA	NA	NA	NA
AYO68334.1\|3085539_3086496_-	DNA adenine methylase	A0A0M4QWR0	Salmonella_phage	1.5e-83	54.4
AYO68335.1\|3086492_3086720_-	hypothetical protein	A0A286S1P6	Klebsiella_phage	2.5e-05	41.0
AYO68336.1\|3086728_3087295_-	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	2.8e-13	33.2
AYO68337.1\|3087291_3087516_-	hypothetical protein	NA	NA	NA	NA
AYO68338.1\|3087584_3087857_-	hypothetical protein	NA	NA	NA	NA
AYO68339.1\|3087872_3088250_-	hypothetical protein	NA	NA	NA	NA
AYO68340.1\|3088265_3088484_-	DUF4761 domain-containing protein	A0A0M5M1I3	Salmonella_phage	3.6e-06	49.1
AYO68341.1\|3088504_3088783_-	hypothetical protein	Q1JS60	Enterobacteria_phage	6.2e-43	88.9
AYO68342.1\|3088903_3089203_+	XRE family transcriptional regulator	Q1JS61	Enterobacteria_phage	6.5e-38	77.8
AYO68343.1\|3089318_3090302_+\|integrase	integrase	Q83VS6	Escherichia_phage	1.4e-150	79.8
AYO68344.1\|3090566_3091580_+	diguanylate cyclase	G3MA91	Bacillus_virus	1.1e-12	33.8
3090418:3090435	attR	NA	NA	NA	NA
AYO68345.1\|3091637_3091739_+	hypothetical protein	NA	NA	NA	NA
AYO70330.1\|3091738_3091813_+	hypothetical protein	NA	NA	NA	NA
AYO68346.1\|3091930_3092056_+	hypothetical protein	NA	NA	NA	NA
AYO68347.1\|3092115_3092379_-	DUF2534 domain-containing protein	NA	NA	NA	NA
AYO68348.1\|3092509_3093148_-	leucine efflux protein	NA	NA	NA	NA
AYO68349.1\|3093237_3094152_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4

DBSCAN-SWA_7

3373311 : 3382775

Brazilian_cedratvirus(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYO68592.1\|3373311_3375033_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
AYO68593.1\|3375077_3375779_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AYO68594.1\|3376132_3376351_+	translation initiation factor IF-1	NA	NA	NA	NA
AYO68595.1\|3376471_3378751_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	7.4e-166	42.2
AYO68596.1\|3378781_3379099_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
AYO68597.1\|3379424_3379646_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
AYO68598.1\|3379579_3379783_-	hypothetical protein	NA	NA	NA	NA
AYO68599.1\|3379722_3381663_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	5.0e-38	41.0
AYO68600.1\|3381659_3382775_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_8

4569038 : 4576700

Stx2-converting_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYO69631.1\|4569038_4569260_+	hypothetical protein	A0A1V0E8E5	Vibrio_phage	9.1e-05	39.3
AYO69632.1\|4569299_4569419_-	hypothetical protein	NA	NA	NA	NA
AYO69633.1\|4569432_4569597_-	hypothetical protein	A0A1B0Z042	Pseudomonas_phage	6.5e-08	66.7
AYO69634.1\|4569597_4569969_-	hypothetical protein	NA	NA	NA	NA
AYO69635.1\|4570043_4570484_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	2.6e-19	60.3
AYO69636.1\|4570480_4570831_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8
AYO69637.1\|4570861_4572454_+\|transposase	IS66-like element ISKox1 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.4e-174	61.4
AYO69638.1\|4572509_4573478_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AYO69639.1\|4574822_4575227_-	hypothetical protein	Q76S41	Shigella_phage	1.0e-22	48.3
AYO69640.1\|4575446_4576700_+	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	1.1e-62	44.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP028479

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

116213 : 124946

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYO70545.1\|116213_116969_+	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	3.4e-136	95.6
AYO70546.1\|117672_118878_+	ParA family protein	A0A077SL49	Escherichia_phage	2.4e-163	69.6
AYO70547.1\|118874_119852_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.4e-86	53.5
AYO70548.1\|119933_121205_-	DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	9.2e-150	63.3
AYO70549.1\|121204_121636_-	peptidase	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
AYO70550.1\|121870_122842_+	StbA family protein	A0A222YXF2	Escherichia_phage	8.2e-74	47.1
AYO70551.1\|122844_123516_+	Mediator of plasmid stability	NA	NA	NA	NA
AYO70552.1\|123578_123809_+	hypothetical protein	NA	NA	NA	NA
AYO70553.1\|124244_124946_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.2e-26	36.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP028480

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP028478

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP028479

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection