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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP033229 Sphingobium yanoikuyae strain SJTF8 plasmid pF3, complete sequence 0 crisprs NA 0 0 0 0
CP033227 Sphingobium yanoikuyae strain SJTF8 plasmid pF1, complete sequence 1 crisprs csa3 0 3 2 0
CP033230 Sphingobium yanoikuyae strain SJTF8 chromosome, complete genome 0 crisprs csa3,WYL,DEDDh,cas3,DinG,RT,cas14j 0 0 13 0
CP033228 Sphingobium yanoikuyae strain SJTF8 plasmid pF2, complete sequence 0 crisprs RT 0 0 1 0

Results visualization

1. CP033227
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP033227_1 16490-16707 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP033227_1 1.1|16507|50|CP033227|PILER-CR 16507-16556 50 NZ_CP033227 Sphingobium yanoikuyae strain SJTF8 plasmid pF1, complete sequence 16507-16556 0 1.0
CP033227_1 1.2|16574|50|CP033227|PILER-CR 16574-16623 50 NZ_CP033227 Sphingobium yanoikuyae strain SJTF8 plasmid pF1, complete sequence 16574-16623 0 1.0
CP033227_1 1.3|16641|50|CP033227|PILER-CR 16641-16690 50 NZ_CP033227 Sphingobium yanoikuyae strain SJTF8 plasmid pF1, complete sequence 16641-16690 0 1.0

1. spacer 1.1|16507|50|CP033227|PILER-CR matches to NZ_CP033227 (Sphingobium yanoikuyae strain SJTF8 plasmid pF1, complete sequence) position: , mismatch: 0, identity: 1.0

gccgccctttgcatatgaagattgcaattccaggggttgaattggtcagc	CRISPR spacer
gccgccctttgcatatgaagattgcaattccaggggttgaattggtcagc	Protospacer
**************************************************

2. spacer 1.2|16574|50|CP033227|PILER-CR matches to NZ_CP033227 (Sphingobium yanoikuyae strain SJTF8 plasmid pF1, complete sequence) position: , mismatch: 0, identity: 1.0

atgccgatgcggtgagagaattcgtgcaattggagcgtggtgggcagcat	CRISPR spacer
atgccgatgcggtgagagaattcgtgcaattggagcgtggtgggcagcat	Protospacer
**************************************************

3. spacer 1.3|16641|50|CP033227|PILER-CR matches to NZ_CP033227 (Sphingobium yanoikuyae strain SJTF8 plasmid pF1, complete sequence) position: , mismatch: 0, identity: 1.0

cccctattgcgccaactagaagaccaatttgaagcctggaattccaccgg	CRISPR spacer
cccctattgcgccaactagaagaccaatttgaagcctggaattccaccgg	Protospacer
**************************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2266 : 50576 41 Gordonia_phage(16.67%) transposase,integrase attL 27472:27517|attR 31239:31284
DBSCAN-SWA_2 236311 : 330965 94 Escherichia_phage(20.0%) transposase,integrase attL 318161:318175|attR 337572:337586
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP033230
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 287041 : 308095 11 Klebsiella_phage(33.33%) tail NA
DBSCAN-SWA_2 313809 : 330212 17 Erwinia_phage(27.27%) capsid,terminase NA
DBSCAN-SWA_3 998419 : 1068709 59 Acidithiobacillus_phage(18.18%) protease,transposase NA
DBSCAN-SWA_4 1126206 : 1149350 15 Thermus_phage(25.0%) integrase,transposase attL 1130224:1130258|attR 1134015:1134049
DBSCAN-SWA_5 1232619 : 1304444 58 Synechococcus_phage(14.29%) transposase NA
DBSCAN-SWA_6 1388795 : 1445854 47 Aureococcus_anophage(20.0%) integrase,transposase attL 1413189:1413206|attR 1449844:1449861
DBSCAN-SWA_7 1509130 : 1518054 9 Synechococcus_phage(16.67%) tRNA,protease NA
DBSCAN-SWA_8 2352348 : 2357972 8 uncultured_Mediterranean_phage(66.67%) NA NA
DBSCAN-SWA_9 2665013 : 2676842 11 Burkholderia_phage(33.33%) capsid,tail,head,portal,terminase,protease NA
DBSCAN-SWA_10 3135891 : 3194763 56 uncultured_virus(16.67%) integrase,transposase attL 3158080:3158096|attR 3188169:3188185
DBSCAN-SWA_11 4813084 : 4819715 8 Burkholderia_phage(25.0%) capsid,tail,head,portal,terminase,protease NA
DBSCAN-SWA_12 4910658 : 4961270 46 Sinorhizobium_phage(18.18%) transposase NA
DBSCAN-SWA_13 4968945 : 4981396 14 Synechococcus_phage(25.0%) capsid,tail,head,portal,integrase,terminase,tRNA,protease attL 4966706:4966721|attR 4977636:4977651
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP033228
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 9978 : 51791 41 Caulobacter_phage(25.0%) transposase,integrase attL 35461:35477|attR 53105:53121
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage