CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP031060	Xanthomonas axonopodis pv. commiphoreae strain LMG26789 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	0	0
CP031059	Xanthomonas axonopodis pv. commiphoreae strain LMG26789 chromosome, complete genome	0 crisprs	cas3,WYL,DinG,csa3,DEDDh,RT	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

480500 : 569748

Enterobacteria_phage(14.29%)

transposase,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYO93986.1\|480500_481004_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AYO93987.1\|481008_482892_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AYO93988.1\|482855_483896_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AYO93989.1\|483952_486691_+	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	2.3e-81	29.6
AYO93990.1\|488627_489784_-\|transposase	IS3-like element ISXc8 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.6e-39	37.5
AYO93991.1\|492694_493771_-	DUF4880 domain-containing protein	NA	NA	NA	NA
AYO97234.1\|493761_494289_-	RNA polymerase sigma factor	NA	NA	NA	NA
AYO93992.1\|494638_495178_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA
AYO93993.1\|495156_497676_+	serine/threonine protein kinase	A0A2P1EMR8	Moumouvirus	8.0e-12	30.2
AYO93994.1\|497719_498034_+	type VI secretion protein	NA	NA	NA	NA
AYO93995.1\|498269_499601_+	methyltransferase domain-containing protein	NA	NA	NA	NA
AYO93996.1\|499750_501718_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	2.5e-37	27.9
AYO93997.1\|501714_502263_+	hypothetical protein	NA	NA	NA	NA
AYO93998.1\|502582_503917_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
AYO97235.1\|503975_504857_-	LysR family transcriptional regulator	NA	NA	NA	NA
AYO93999.1\|505106_505997_+	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA
AYO97236.1\|506496_507831_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AYO94000.1\|507812_509090_+	type VI secretion system protein TssL	NA	NA	NA	NA
AYO94001.1\|509086_512617_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
AYO94002.1\|512613_513189_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
AYO94003.1\|513185_513902_+	serine/threonine-protein phosphatase	NA	NA	NA	NA
AYO94004.1\|513906_517596_+	protein kinase	Q0N495	Clanis_bilineata_nucleopolyhedrovirus	1.2e-08	29.2
AYO94005.1\|517592_518054_+	hypothetical protein	NA	NA	NA	NA
AYO94006.1\|518050_519727_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
AYO94007.1\|519738_527922_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
AYO94008.1\|527971_529015_+	type VI secretion system protein TssA	NA	NA	NA	NA
AYO94009.1\|529370_529661_-	DUF2782 domain-containing protein	NA	NA	NA	NA
AYO94010.1\|529737_532539_+	DNA polymerase I	A0A218MKQ4	uncultured_virus	6.2e-66	30.1
AYO94011.1\|533381_534281_-	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA
AYO97237.1\|534478_534661_+	hypothetical protein	NA	NA	NA	NA
AYO94012.1\|534698_535268_-	hypothetical protein	NA	NA	NA	NA
AYO94013.1\|535264_535981_-	hypothetical protein	NA	NA	NA	NA
AYO94014.1\|536413_538774_-	S9 family peptidase	NA	NA	NA	NA
AYO94015.1\|539402_540710_+	AMP-ligase	NA	NA	NA	NA
AYO97238.1\|541018_541912_-	pteridine-dependent deoxygenase	NA	NA	NA	NA
AYO94016.1\|542022_543372_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
AYO94017.1\|543675_543945_+	acyl carrier protein	NA	NA	NA	NA
AYO94018.1\|543919_544666_+	ketosynthase	NA	NA	NA	NA
AYO94019.1\|544719_545469_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
AYO94020.1\|545480_545768_+	hypothetical protein	NA	NA	NA	NA
AYO94021.1\|545764_546739_+	acyltransferase	NA	NA	NA	NA
AYO97239.1\|546662_547310_+	fatty acyl CoA synthetase	NA	NA	NA	NA
AYO97240.1\|547448_549815_+	hypothetical protein	NA	NA	NA	NA
AYO94022.1\|549801_550233_+	phosphotransferase	NA	NA	NA	NA
AYO94023.1\|550242_550782_-	hypothetical protein	NA	NA	NA	NA
AYO94024.1\|550964_551696_+	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	3.1e-09	27.4
AYO94025.1\|551836_552298_-	hypothetical protein	NA	NA	NA	NA
AYO94026.1\|552322_553945_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
AYO94027.1\|553941_554763_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
AYO94028.1\|554759_555533_-	hypothetical protein	NA	NA	NA	NA
AYO94029.1\|556949_557210_+	YcgL domain-containing protein	NA	NA	NA	NA
AYO94030.1\|557202_560523_+	hypothetical protein	NA	NA	NA	NA
AYO94031.1\|560911_562711_+	glycoside hydrolase family 15 protein	NA	NA	NA	NA
AYO97241.1\|568645_569748_-\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1119588 : 1131388

Escherichia_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYO94459.1\|1119588_1120545_-	glycosyltransferase	A0A192Y8W7	Salmonella_phage	1.8e-25	27.4
AYO94460.1\|1120525_1121254_-	hypothetical protein	NA	NA	NA	NA
AYO94461.1\|1121417_1122362_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
AYO94462.1\|1122361_1123108_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
AYO94463.1\|1123343_1124399_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	6.8e-82	48.3
AYO94464.1\|1124454_1125342_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.6e-95	58.5
AYO94465.1\|1125338_1125896_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.5e-43	47.8
AYO94466.1\|1125892_1126795_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.2e-25	36.3
AYO94467.1\|1127135_1128302_+	nucleotide sugar dehydrogenase	M1HV26	Paramecium_bursaria_Chlorella_virus	4.7e-116	57.6
AYO94468.1\|1128591_1129995_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	5.5e-47	29.6
AYO94469.1\|1130041_1131388_-	phosphomannomutase	A0A127AWJ1	Bacillus_phage	5.7e-33	27.1

DBSCAN-SWA_3

3090284 : 3102283

uncultured_Caudovirales_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYO95864.1\|3090284_3092243_-	PAS domain S-box protein	A0A2H4J162	uncultured_Caudovirales_phage	1.6e-12	42.9
AYO95865.1\|3094785_3094998_-	carbon storage regulator	J7I430	Pseudomonas_phage	1.3e-13	76.5
AYO95866.1\|3095137_3097786_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	4.8e-84	39.8
AYO95867.1\|3097887_3098376_-	regulatory protein RecX	NA	NA	NA	NA
AYO95868.1\|3098672_3099707_-	DNA recombination/repair protein RecA	A0A0S2MVG1	Bacillus_phage	1.1e-113	61.0
AYO95869.1\|3099879_3100521_-	transcriptional repressor LexA	A0A1W6JNS2	Morganella_phage	2.4e-13	40.2
AYO95870.1\|3100606_3102283_-	2-polyprenylphenol 6-hydroxylase	G8DDN0	Micromonas_pusilla_virus	4.2e-41	29.4

DBSCAN-SWA_4

3695119 : 3766499

Acinetobacter_phage(11.11%)

protease,transposase,integrase

attL 3763497:3763514|attR 3768466:3768483

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYO96353.1\|3695119_3696224_+\|transposase	IS3 family transposase	NA	NA	NA	NA
AYO96354.1\|3696310_3696850_+	type I restriction endonuclease subunit S	NA	NA	NA	NA
AYO96355.1\|3696886_3698689_+	DUF262 domain-containing protein	NA	NA	NA	NA
AYO96356.1\|3699465_3700056_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AYO96357.1\|3700127_3700841_+	oxidoreductase	NA	NA	NA	NA
AYO96358.1\|3701561_3704234_-	M1 family peptidase	A0A0P0IY26	Acinetobacter_phage	2.5e-80	28.6
AYO96359.1\|3704608_3705901_-	adenylosuccinate synthetase	A0A2R8FF47	Brazilian_cedratvirus	5.8e-75	38.4
AYO96360.1\|3706436_3706901_-\|transposase	transposase	NA	NA	NA	NA
AYO96361.1\|3707151_3708015_-\|protease	protease modulator HflC	NA	NA	NA	NA
AYO96362.1\|3708014_3709142_-\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
AYO96363.1\|3709821_3710208_-	response regulator	W8CYM9	Bacillus_phage	5.6e-10	31.8
AYO96364.1\|3710704_3711604_-	J domain-containing protein	A0A2L0UZR4	Agrobacterium_phage	3.5e-18	27.7
AYO96365.1\|3712016_3712493_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
AYO96366.1\|3712655_3713138_+	peroxiredoxin	A0A1D8KSL1	Synechococcus_phage	5.4e-26	38.9
AYO96367.1\|3713178_3713739_+	bacterioferritin	NA	NA	NA	NA
AYO96368.1\|3714087_3716508_-	penicillin-binding protein 1C	NA	NA	NA	NA
AYO96369.1\|3716899_3717847_-	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	1.7e-07	36.8
AYO96370.1\|3717991_3720994_-	TonB-dependent receptor	NA	NA	NA	NA
AYO96371.1\|3721319_3726242_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA
AYO96372.1\|3726738_3727743_-	nucleoside hydrolase	NA	NA	NA	NA
AYO96373.1\|3727819_3730036_-	TonB-dependent receptor	NA	NA	NA	NA
AYO96374.1\|3730552_3731752_-	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA
AYO96375.1\|3731864_3732422_-	hypothetical protein	NA	NA	NA	NA
AYO96376.1\|3732431_3735026_-	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA
AYO96377.1\|3735185_3736340_-	2-methylcitrate synthase	NA	NA	NA	NA
AYO96378.1\|3736414_3737311_-	methylisocitrate lyase	NA	NA	NA	NA
AYO97457.1\|3737439_3739059_+	propionate catabolism operon regulatory protein PrpR	NA	NA	NA	NA
AYO96379.1\|3739286_3739613_-	hypothetical protein	NA	NA	NA	NA
AYO96380.1\|3740195_3740378_-	hypothetical protein	NA	NA	NA	NA
AYO96381.1\|3740694_3741048_-	pilus assembly protein PilZ	NA	NA	NA	NA
AYO96382.1\|3741044_3742004_-	DNA polymerase III subunit delta'	NA	NA	NA	NA
AYO96383.1\|3742000_3743074_-	endolytic transglycosylase MltG	NA	NA	NA	NA
AYO96384.1\|3743134_3744490_-	aminodeoxychorismate synthase component I	NA	NA	NA	NA
AYO96385.1\|3744655_3745891_-	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA
AYO96386.1\|3746032_3746272_-	acyl carrier protein	B2ZXV3	Ralstonia_phage	5.9e-10	44.6
AYO96387.1\|3746476_3747220_-	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	6.2e-13	29.7
AYO96388.1\|3747302_3748247_-	[acyl-carrier-protein] S-malonyltransferase	NA	NA	NA	NA
AYO96389.1\|3748535_3748976_-	MEKHLA domain-containing protein	NA	NA	NA	NA
AYO96390.1\|3749223_3750201_-	3-oxoacyl-ACP synthase III	NA	NA	NA	NA
AYO96391.1\|3750291_3750486_-	50S ribosomal protein L32	NA	NA	NA	NA
AYO96392.1\|3750583_3751093_-	DUF177 domain-containing protein	NA	NA	NA	NA
AYO96393.1\|3751204_3751780_+	septum formation inhibitor Maf	NA	NA	NA	NA
AYO96394.1\|3753360_3755199_-	glycosyltransferase family 39 protein	NA	NA	NA	NA
AYO96395.1\|3755236_3756190_+	MoxR family ATPase	NA	NA	NA	NA
AYO96396.1\|3756194_3757151_+	DUF58 domain-containing protein	NA	NA	NA	NA
AYO96397.1\|3757143_3759096_+	DUF3488 domain-containing protein	NA	NA	NA	NA
AYO96398.1\|3759092_3759626_+	hypothetical protein	NA	NA	NA	NA
AYO96399.1\|3759743_3760094_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA
AYO96400.1\|3760194_3760788_-	recombination protein RecR	NA	NA	NA	NA
AYO96401.1\|3760885_3761206_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
AYO96402.1\|3761212_3763285_-	DNA polymerase III subunit gamma/tau	E7DN81	Pneumococcus_phage	1.8e-46	41.0
3763497:3763514	attL	NA	NA	NA	NA
AYO96403.1\|3763598_3765119_+\|integrase	integrase	NA	NA	NA	NA
AYO96404.1\|3765394_3766499_+\|transposase	IS3 family transposase	NA	NA	NA	NA
3768466:3768483	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage