CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP031652	Pantoea agglomerans strain TH81 plasmid unnamed3, complete sequence	0 crisprs	NA	0	0
CP031649	Pantoea agglomerans strain TH81 chromosome, complete genome	2 crisprs	DEDDh,cas3,DinG	1	5
CP031650	Pantoea agglomerans strain TH81 plasmid unnamed1, complete sequence	2 crisprs	csa3	3	0
CP031651	Pantoea agglomerans strain TH81 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP031649_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031649_1

1623736-1623827

Orphan

Consensus_repeat	Method
AGGCGCATCAATGAAACTCTCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031649_1

>merge|CP031649|1|1623736-1623827|CRISPRCasFinder
AGGCGCATCAATGAAACTCTCTTATCCTGGCACCGGCGGTGACAGTCCGGCATCGACATCCGCTACCGAAGGCGCATCAATGAAACTCACTT

>CP031649|1|1|1623736-1623827|CRISPRCasFinder
AGGCGCATCAATGAAACTCTCTT	ATCCTGGCACCGGCGGTGACAGTCCGGCATCGACATCCGCTACCGA
AGGCGCATCAATGAAACTCACTT

Protein	Signature genes	Signature genes Name	Protein_function
CP031649.1\|AYP22812.1\|1620604_1621366_+\|phosphonate-C-P-lyase-system-protein-PhnK	unknown	unknown	gnl\|CDD\|183280
CP031649.1\|AYP22817.1\|1625520_1626447_+\|phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|132472
CP031649.1\|AYP22821.1\|1630998_1632513_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
CP031649.1\|AYP22806.1\|1616325_1616724_+\|fosfomycin-resistance-glutathione-transferase	unknown	unknown	gnl\|CDD\|319908
CP031649.1\|AYP22814.1\|1622076_1623213_+\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|237967
CP031649.1\|AYP22810.1\|1618697_1619774_+\|carbon-phosphorus-lyase-complex-subunit-PhnI	unknown	unknown	gnl\|CDD\|377563
CP031649.1\|AYP22808.1\|1617676_1618123_+\|phosphonate-C-P-lyase-system-protein-PhnG	unknown	unknown	gnl\|CDD\|377702
CP031649.1\|AYP22807.1\|1616963_1617677_+\|phosphonate-metabolism-transcriptional-regulator-PhnF	unknown	unknown	gnl\|CDD\|182227
CP031649.1\|AYP22811.1\|1619766_1620615_+\|carbon-phosphorus-lyase-complex-subunit-PhnJ	unknown	unknown	gnl\|CDD\|226154
CP031649.1\|AYP22809.1\|1618122_1618698_+\|phosphonate-C-P-lyase-system-protein-PhnH	unknown	unknown	gnl\|CDD\|236655
CP031649.1\|AYP22820.1\|1628235_1630851_-\|response-regulator	unknown	unknown	gnl\|CDD\|237425
CP031649.1\|AYP22805.1\|1615440_1616070_-\|Vat-family-streptogramin-A-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100040
CP031649.1\|AYP22818.1\|1626540_1627401_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
CP031649.1\|AYP22824.1\|1634778_1635462_+\|D-lyxose/D-mannose-family-sugar-isomerase	unknown	unknown	gnl\|CDD\|377827
CP031649.1\|AYP22823.1\|1633594_1634533_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|380544
CP031649.1\|AYP22819.1\|1627397_1628282_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
CP031649.1\|AYP22825.1\|1635477_1636221_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|223816
CP031649.1\|AYP22816.1\|1624663_1625494_+\|phosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226164
CP031649.1\|AYP22822.1\|1632523_1633504_+\|ribose-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226633
CP031649.1\|AYP22813.1\|1621366_1622080_+\|phosphonate-C-P-lyase-system-protein-PhnL	unknown	unknown	gnl\|CDD\|227118

Protein	Function_ID	Function_description	E-value
CP031649.1\|AYP22812.1\|1620604_1621366_+\|phosphonate-C-P-lyase-system-protein-PhnK	gnl\|CDD\|183280	PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional.	3.09656e-179
CP031649.1\|AYP22817.1\|1625520_1626447_+\|phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|132472	TIGR03431, PhnD, phosphonate ABC transporter, periplasmic phosphonate binding protein. This model is a subset of the broader subfamily of phosphate/phosphonate binding protein ABC transporter components, TIGR01098. In this model all members of the seed have support from genomic context for association with pathways for the metabolims of phosphonates, particularly the C-P lyase system, GenProp0232. This model includes the characterized phnD gene from E. coli. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.	2.70972e-103
CP031649.1\|AYP22821.1\|1630998_1632513_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
CP031649.1\|AYP22806.1\|1616325_1616724_+\|fosfomycin-resistance-glutathione-transferase	gnl\|CDD\|319908	cd07244, FosA, fosfomycin resistant protein subfamily FosA. This subfamily family contains FosA, a fosfomycin resistant protein. FosA is a Mn(II) and K(+)-dependent glutathione transferase. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.	2.85462e-65
CP031649.1\|AYP22814.1\|1622076_1623213_+\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	gnl\|CDD\|237967	PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional.	0
CP031649.1\|AYP22810.1\|1618697_1619774_+\|carbon-phosphorus-lyase-complex-subunit-PhnI	gnl\|CDD\|377563	pfam05861, PhnI, Bacterial phosphonate metabolism protein (PhnI). This family consists of several Proteobacterial phosphonate metabolism protein (PhnI) sequences. Bacteria that use phosphonates as a phosphorus source must be able to break the stable carbon-phosphorus bond. In Escherichia coli phosphonates are broken down by a C-P lyase that has a broad substrate specificity. The genes for phosphonate uptake and degradation in E. coli are organized in an operon of 14 genes, named phnC to phnP. Three gene products (PhnC, PhnD and PhnE) comprise a binding protein-dependent phosphonate transporter, which also transports phosphate, phosphite, and certain phosphate esters such as phosphoserine; two gene products (PhnF and PhnO) may have a role in gene regulation; and nine gene products (PhnG, PhnH, PhnI, PhnJ, PhnK, PhnL, PhnM, PhnN, and PhnP) probably comprise a membrane-associated C-P lyase enzyme complex.	0
CP031649.1\|AYP22808.1\|1617676_1618123_+\|phosphonate-C-P-lyase-system-protein-PhnG	gnl\|CDD\|377702	pfam06754, PhnG, Phosphonate metabolism protein PhnG. This family consists of several bacterial phosphonate metabolism protein PhnG sequences. In Escherichia coli, the phn operon encodes proteins responsible for the uptake and breakdown of phosphonates. The exact function of PhnG is unknown, however it is thought likely that along with six other proteins PhnG makes up the the C-P (carbon-phosphorus) lyase.	2.97194e-66
CP031649.1\|AYP22807.1\|1616963_1617677_+\|phosphonate-metabolism-transcriptional-regulator-PhnF	gnl\|CDD\|182227	PRK10079, PRK10079, phosphonate metabolism transcriptional regulator PhnF; Provisional.	1.52821e-158
CP031649.1\|AYP22811.1\|1619766_1620615_+\|carbon-phosphorus-lyase-complex-subunit-PhnJ	gnl\|CDD\|226154	COG3627, PhnJ, Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism].	0
CP031649.1\|AYP22809.1\|1618122_1618698_+\|phosphonate-C-P-lyase-system-protein-PhnH	gnl\|CDD\|236655	PRK10147, phnH, phosphonate C-P lyase system protein PhnH.	5.60955e-77
CP031649.1\|AYP22820.1\|1628235_1630851_-\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	6.10044e-91
CP031649.1\|AYP22805.1\|1615440_1616070_-\|Vat-family-streptogramin-A-O-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	1.68935e-74
CP031649.1\|AYP22818.1\|1626540_1627401_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	5.16204e-86
CP031649.1\|AYP22824.1\|1634778_1635462_+\|D-lyxose/D-mannose-family-sugar-isomerase	gnl\|CDD\|377827	pfam07385, Lyx_isomer, D-lyxose isomerase. Members of this family of sugar isomerases belong to the cupin superfamily. The enzyme from Cohnella laevoribosii has been shown to be specific for D-lyxose, L-ribose, and D-mannose. E. coli sugar isomerase (EcSI) has been structurally and functionally characterized and shows a preference for D-lyxose and D-mannose.	1.00899e-134
CP031649.1\|AYP22823.1\|1633594_1634533_+\|transcriptional-regulator	gnl\|CDD\|380544	cd06321, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.	2.82871e-127
CP031649.1\|AYP22819.1\|1627397_1628282_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	8.69292e-82
CP031649.1\|AYP22825.1\|1635477_1636221_-\|DNA-binding-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.16502e-72
CP031649.1\|AYP22816.1\|1624663_1625494_+\|phosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226164	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	6.62346e-113
CP031649.1\|AYP22822.1\|1632523_1633504_+\|ribose-ABC-transporter-permease	gnl\|CDD\|226633	COG4158, COG4158, Predicted ABC-type sugar transport system, permease component [General function prediction only].	8.44839e-160
CP031649.1\|AYP22813.1\|1621366_1622080_+\|phosphonate-C-P-lyase-system-protein-PhnL	gnl\|CDD\|227118	COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	5.35675e-133

>CP031649.1|AYP22814.1|1622076_1623213_+|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase
MIINNVRLVLENEVVTGSLEFRDERISSFSETTSQQPGALDGEGAWLMPGLVELHTDNLDKFFTPRPKVDWPAHSAMSSHDALMVSSGITTVLDAIGVGDVRDGGHRLDNLSKMIDAIRDSNRKGLNRAEHLLHLRCELPHPTTAPLFEALMGTPELALVSLMDHSPGQRQYASLTKYREYYQGKYQLNDAEMDQFEHDQLTLAAEWSQPNRQAIAGLCREHGIAIASHDDATAAHVEESHAAGSRIAEFPTTLEAARASRYRNMQVLMGAPNIVRGGSHSGNVAAWELASHGLLNILSSDYYPASLLDAAFRLADDERNSLGMAQAIALVTCNPARALGLEDRGVIAEGCRADLVLAHTAHGYPHVRHVWSKGRQVY
>CP031649.1|AYP22813.1|1621366_1622080_+|phosphonate-C-P-lyase-system-protein-PhnL
MTTITPRLRVENLCKTFVLHNQNGAALPVLHNASLTAGEGECVVLHGHSGSGKSTLLRALYGNYQPDSGHIRVAHQGEWIDMAQASARQIIALRRDTLGWVSQFLRVIPRVPTLEIVMQPLLERGVERAFCEARAAELLTRLNVPQRLWSLAPSTFSGGEQQRVNIARGFIADYPVLLLDEPTASLDSVNSEAVVSLIEQARARGAAIVGIFHDRAVRERVADRLHLMHPIETGAQA
>CP031649.1|AYP22812.1|1620604_1621366_+|phosphonate-C-P-lyase-system-protein-PhnK
MHSEQPLLAVNQLTHLYAPGKGFEQVSFDLFPGEVLGIVGESGSGKTTLLQSLSARLTPQQGSILYQNRDLYQMSESDRRRLLRTEWGVVHQHPMDGLRSQVSAGGNIGERLMATGQRHYGDIRAEASRWLQAVEIDAGRIDDLPTTFSGGMQQRLQIARNLVTQPQLMFMDEPTGGLDVSVQARLLDLLRTLVRELNLAVVIVTHDLGVARLLAHRLLVMKQGRVVESGLTDRVLDDPHHPYTQLLVSSVLN
>CP031649.1|AYP22811.1|1619766_1620615_+|carbon-phosphorus-lyase-complex-subunit-PhnJ
MAELTGYNNGYLDEQTKRTIRRAILKAVAIPGYQVPFAGREMPMPYGWGTGGIQITASVIGDQDVLKVIDQGADDTTNAVSIRQFFKRVSNAATTERTADATLIQTRHRIPETPLEEDQILIFQVPIPEPLRFIEPRETETRTMHALEEYGIMQVKLYEDIARYGHIATTYAYPVRVNDRYVMDPSPIPKFDNPKMHMMPALQLFGAGREKRIYALPPYTRVESLDFDDHPFTVQQWDEPCALCGSRHSYLDEVVMDDQGTRMFVCSDTDFCHQQQEQQHAQ
>CP031649.1|AYP22810.1|1618697_1619774_+|carbon-phosphorus-lyase-complex-subunit-PhnI
MYVAVKGGEKAISNAHQLQADLRRGDRAVAELGCDQVAQQLGLAVDRVMTEGGIYDPELAALAIKQASGDLVEAIFLLRAYRTTLPRLAESTPLATGAMRIERRISAVYKDLPGGQVLGPTYDYSHRLLDFTLLANGETPAAPRDDRSVPDQCPHMFSMMSDEGLAAAEMDDGSEPVDITREPMSFPASRAARLQQLVRGDEGFLLALGYSTQRGYGRTHPFAGEIRTGTLSVSICPEELGFELEIGELLLTECEMVNGVAHSDDTAPHFTRGYGLVFGRAERKAMAMALVDRALQSREQHERVTSPAQDEEFVLSHADNVEAAGFVSHLKLPHYVDFQAELELLKQLQHDYQERNHG
>CP031649.1|AYP22809.1|1618122_1618698_+|phosphonate-C-P-lyase-system-protein-PhnH
MTLLASFNHPVADAQRAFRRILKAMSEPGVMVSLPLQQGWGALSPAATALLLTLVDQESPVWLDAEIDNEQLRNNLRFHTGAPITTQQDAPFALSHAAAQPDPTQFAAGDNMSPEKSTTLIIEVPSLNGGLTLRLSGPGLRETRAIAPQLPESVLEYLRTRPHPFPQGVDLIFTCGEAIMAVPRTTVVEVC
>CP031649.1|AYP22808.1|1617676_1618123_+|phosphonate-C-P-lyase-system-protein-PhnG
MEQQTDRQRWLSVLAHSSAALLETHWQALNLQPAFTLIRPAEIGLTRLQARMGATGKRFVMGDATVTRAVVQLSDGTLGYSYLLGRDKAHAERCALLDALLQQPETRQLLEEKIITPLAAWRDEQRQLRAREIASSKVDFFTLVRGDN
>CP031649.1|AYP22807.1|1616963_1617677_+|phosphonate-metabolism-transcriptional-regulator-PhnF
MELSRHPTTVYQAVAAQLEQALKERYRCGDYLPSEQQLADHYEVNRHTLRRAVDELVNKGLLQRRHGVGILVLMRPYDYPLHAQARFSQNLLEQGSHPTSERLLAVLRPASNDVANALGVKEGDNVIHLRTLRRANGVPLCLINHFLADLSWWPQLQQFNSGSLHDFLVEHTGKQLVRTQTRISTRRAQAKECRQLDIALHSPLLCVRTLNKTSDGAVAEYSVSLTRGDMIELTLEH
>CP031649.1|AYP22806.1|1616325_1616724_+|fosfomycin-resistance-glutathione-transferase
MLTGLNHLTLAVSNLASSLNFYTETLGFTPKAAWDHGAYLSLGELWLCLSVDTVSAGNDYTHYAFTIPGDEFDAFVERLRAAGVTEWKRNKSEGNSFYFLDPDGHRLEIHDGDLESRIRACLAQPYQGMTFF
>CP031649.1|AYP22805.1|1615440_1616070_-|Vat-family-streptogramin-A-O-acetyltransferase
MYGPDPANPHPMEGFPQVCFIKNTVKNPNIIIGDFTYYDDPEDSENFERNVLYHFPFIGDKLIMGKFCAIARGVQFIMNGANHNMAGFSTFPFYIFGNGWETAQPQAGDLPYKGDTVIGNDVWMGYQALIMPGVKIGNGAIISSRSVVTSDVPAYSIVGGNPARVIRQRFTDETISRLEKLAWWDWPVEKITQNLPAIISADLEALPDE
>CP031649.1|AYP22816.1|1624663_1625494_+|phosphonate-ABC-transporter-ATP-binding-protein
MAQALLKTVVDNDLPPASLSGQKVLSVQKLSKAYGDTQVLDQVSFDLHAGELVAVIGRSGAGKSTLLHMLNGTIEATSGAIISLHHGEADRNVVTLNSRQLREWRSQCGMIFQDFCLVPRLDVLTNVLLGRLSQTGTLKSFFKIFSDNDRAHAIELLQWMNMLPQALQRAENLSGGQMQRVAICRALMQNPKILLADEPVASLDPKNTKRIMDVLRQVSEQGISVMVNLHSIELVKSYCTRVIGIQRGVVLFDGHPSGLTDSLLHQLYGDELNQIH
>CP031649.1|AYP22817.1|1625520_1626447_+|phosphonate-ABC-transporter-substrate-binding-protein
MKLTSLALLTSVMAFGVSAADAPKQLNLGILGGQNATQQIGDNQCVKTFFDKELGVDTQMRNASDYSGVIQGLLGGKIDMVLSMSPASFASVYIQDPKAVDVVGIVVDDKDQSRGYHSVVIVKADSPYKKLEDLKGKSFGMADPDSTSGFLMPNQAFKKMFGGSVDDKYNNTFSSVTFSGGHEQDILGVLNNQFDGAVTWTSLVGDYNSGYTSGAFGRLIRMDHPDLMKQIRIIWQSPLIPNGPVLVSNKLPADFKAKVVSAIKKLDKEDHACFVKAVGGEQHIGQATVADYQNIIDMKRDLMKGSRG
>CP031649.1|AYP22818.1|1626540_1627401_+|phosphonate-ABC-transporter,-permease-protein-PhnE
MTEFEHYYQRIRRQQKRDTLLWSLLLVALYLAAGRVAEFNLLTVWQSLPHFFDYLHEILPVLHLPLLFADGKTEGSLAYWGYRLPIQLPLIWETLQLALASTLVAVALAAVLAFFAADNTQTPVSVRMTIRAFVAFLRTMPELAWAVMFVMAFGIGAIPGFLALALHTVGSLTKLFYEAIESASDKPVRGLAACGASKLQRMRFAFWPQVKPVFLSYSFMRLEINFRSSTILGLVGAGGIGQELMTNIKLDRYDQVSITLLLILIVVSLLDTLSGQLRRRVTGDRT
>CP031649.1|AYP22819.1|1627397_1628282_+|phosphonate-ABC-transporter,-permease-protein-PhnE
MISTVPDIALMKQQHRELFAAQPRYLRRLALMTLAVLLYYLFFFSVFGLEWSHLLMGCQQLGRYFLRMFVWHDFLNWPFGYYLSQVGITLGIVFAGTLTASLLALPLSFLAARNVMHSRTAKPLAFLMRRLFDVLRGIDMAIWGLIFVRAVGMGPLAGVLAIILQDVGLLGKLYAEGHEAVERSPGRGLGAVGANSLQKHRFGIFTQSFPQFLALSLYQIESNTRSAAVLGFVGAGGVGLVYAENMRLWNWDVVMFLTLILVVVVMVMDVISSRLRKRYISGKPVPLWQPAARD
>CP031649.1|AYP22820.1|1628235_1630851_-|response-regulator
MQRTYPWQAGARGRLLLFNLLVVSVTLMVSVVAILGFRHAGAIQEQAQAQTLADMNGSLALARDTANVATAAVRLSQVVGALEYQSESQRLQQNQQALQQSLSLLASAPLAARQPERIARIRARSLMLEQTINSLLLTGHQRHLQRNNMLSDLWQTQILLSHIDQLVQREQRTLPDAALREQTERLITIAIRTPSPIAVIEQLQQVMAQWRNVPLTGVTGENVQRLLATQQRLLPLAEALEQSDLAIAYATYRIKALVAMLNEDISASVQQVALQSEARTLATHRELDSIIGFIALFALLALAITGYAGIYIYRNLGSSLTAIAGAMTRLAQGEQNVSVPGLQRRDELGELARAFNVFARNTASLAHTSRLLKEKSNQLESTFLAMRDGFALFDNNGQLVVWNAQYAELLGIAPHELHRGVPWQQLLAPLAVDLHDPGEPQEIRLADGRTLELRFSPIPRRGMVNTVLDRTSRKTLEEALQHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLALTEGQLTPGPLASRIDRARQAADRAAQLTQRLLAFSRKQALYPRAVSVVTLVDNLQGLLQHSLLPGQQLIIDAQRPGWPAWIDASQLENALMNLVVNARDAMHQQSGEIRLRIWNQRRLEGDEKRDRVTIEVIDHGCGMSAGVREQVFEPFFTTKATGSGSGLGLSMVYGFVRQSGGQIELETAPGQGTTVRLLLPRAPEAAVAVVIAPPSPVHIETDIAAASNRLVLVLDDEPAVRQTLCEHLHQLGYLTLECGDGEEALALLRQTPDIDLLISDLMLPGEINGAEVIRQAQQNWPQLATLLISGQDLRHQPVTLPLCERLAKPWQQAQLVQALQRAWQRSERLNRAQQAATTAPASR
>CP031649.1|AYP22821.1|1630998_1632513_+|sugar-ABC-transporter-ATP-binding-protein
MTATPILEMRGITRRFGSFYALKGVDLTVYPGEVHALMGENGAGKSTLMKILAGAYTASSGEILIEGKPWALKGPKEALAAGITLIYQEINLAPNLTVAENIFLGSEIAPGGLVKRRQMAEEAQRVIDRLGAQFSAWDLVSRLSIAEQQQVEIARALQRNSRILVMDEPTAALSNRETEQLFALIKRLRSEGMAIIYISHRMAEVYELSDRVSVLRDGEYVGSLTRDQLNASELVRMMVGRPLSDLFNKDRAIPLGDIRLAVNHLTDGGKVHPSSLEVRAGEIVGLAGLVGAGRSELAQLIFGVHKPKEGEIWIDGEKVTIHSPRDAIARGIGFLTENRKEQGLFLEMAAQENIVMATLERDASYGMLNRRKGQTIASEAIASLNIRVPHAQVRAGGLSGGNQQKLLISRWVAIGPRILILDEPTRGVDVGAKSEIYRMMQEMARQGVAILMISSELPEVVGMSDRVYVMHEGTIVGELEGSHISQENIMTLATGAHSASAGEI
>CP031649.1|AYP22822.1|1632523_1633504_+|ribose-ABC-transporter-permease
MTQLARTKAPTLKRALMGDLLQTVGILPILILIVAIFGFVTPNFFTEANLLNITRQASINIVLAAGMTFVILTGGIDLSVGSMLGTTAVVALVASLDPMLASMTIPMALGAGLVMGLFNGILVAWAGLPPFIVTLGTYTALRGAAYLLADGTTVINSDINFEWIGNGYLGPVPWLIVIAFAVIAICWFILRRTTLGVHIYAVGGNIQAARLTGIKVGMVLLFVYGMSGLLSGLGGLMSASRLYSANGNLGVGYELDAIAAVILGGTSFVGGIGTITGTLIGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIAVLIDKYRTRHHVS
>CP031649.1|AYP22823.1|1633594_1634533_+|transcriptional-regulator
MRFNPIVTGLLAATLFSTGLAQAKELKSIGVTVGDLANPFFVQITKGAEMKARQLAGDKVNVTLVSSGYDLGQQVGQIDNFIAAKVDMIILNAADSKGIAPAVKRARDAGIVVVAVDVAADGANATITSDNTEAGAMACKYIADRLKNKGNVVIINGPPVSAVQNRVEGCMTELKTHPDIKLLSYNQNAKGSREGGLEVMTGLLSANPKIDAVFAINDPTAIGADLAAKQAQRSEFFIVGVDGSPDGEEALKRKNSLFVATPAQDPQVMAAKAVEIGYDILQGKPAPDKPVLIPVKLIDRNNIGSYQGWTVK
>CP031649.1|AYP22824.1|1634778_1635462_+|D-lyxose/D-mannose-family-sugar-isomerase
MQRSEVNYYLQHTREFFRQQDVHLPPWADFDVSQWRAQDREVAQEILALRLGWDLTSFGAADFLQTGLTLFTLRNGSPGGQPWHKPYAEKIMHVREGQQTPMHYHPHKMEDIINRGGGNLIVELHNRDGDGLADSLVAVSLDGLRQTHAAGSLLRLSPGESVTLEAGIWHSFWGESGFGDVLVGEVSMPNDDENDNLFLTPLARFNPLEEDEAPRWLLCNDYAHWLS
>CP031649.1|AYP22825.1|1635477_1636221_-|DNA-binding-response-regulator
MKPAILVVDDDPAVCDVLQDALSEHLLTVYRCHQGREALSMLSEHPEISLVMLDMMLPDTNGLLVLQQLQRQRPEVLVIMLTGMGSEAEMVVGLEMGADDYIAKPFNPRVVVARTRAALRRSGRIAQADPEQEGWRFGGWQLDDGRCQLFNPQRELVPLTQGEYSLLRALVRHARKVLTRDQLLELTHSESLDVFDRTIDVLIMRLRRKIEINPHQPNLIRTIRGLGYVFSADVVKPDSTTRASQIA

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Crispr_ID: CP031649_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031649_2

1725043-1725187

Orphan

Consensus_repeat	Method
AGAGATAACAGCGGGTGGGTTGAATAACATTCGGTCTGCTGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031649_2

>merge|CP031649|2|1725043-1725187|CRISPRCasFinder
AGAGATAACAGCGGGTGGGTTGAATAACATTCGGTCTGCTGAGCAAAAATTCAGAGGCAATCCCAAAAAACCACAGCGATAAAGTTCCCGACATAACAAGAAGAGATAACAGCGGGTAGGTTGAATAACATTCGGTCTGCTGAGC

>CP031649|2|2|1725043-1725187|CRISPRCasFinder
AGAGATAACAGCGGGTGGGTTGAATAACATTCGGTCTGCTGAGC	AAAAATTCAGAGGCAATCCCAAAAAACCACAGCGATAAAGTTCCCGACATAACAAGA
AGAGATAACAGCGGGTAGGTTGAATAACATTCGGTCTGCTGAGC

Protein	Signature genes	Signature genes Name	Protein_function
CP031649.1\|AYP22900.1\|1721516_1722185_+\|cystine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|185055
CP031649.1\|AYP22897.1\|1718894_1719398_+\|flagella-biosynthesis-regulatory-protein-FliZ	unknown	unknown	gnl\|CDD\|183213
CP031649.1\|AYP22906.1\|1732542_1733658_+\|iron-uptake-system-protein-EfeO	unknown	unknown	gnl\|CDD\|236677
CP031649.1\|AYP22910.1\|1738291_1739350_-\|two-component-system-sensor-histidine-kinase-PmrB	unknown	unknown	gnl\|CDD\|236751
CP031649.1\|AYP22911.1\|1739346_1740027_-\|response-regulator	unknown	unknown	gnl\|CDD\|182612
CP031649.1\|AYP22907.1\|1733660_1734938_+\|deferrochelatase/peroxidase-EfeB	unknown	unknown	gnl\|CDD\|273606
CP031649.1\|AYP22903.1\|1725592_1729540_-\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
CP031649.1\|AYP22905.1\|1731665_1732490_+\|FTR1-family-protein	unknown	unknown	gnl\|CDD\|272930
CP031649.1\|AYP22896.1\|1718121_1718844_+\|RNA-polymerase-sigma-factor-FliA	unknown	unknown	gnl\|CDD\|235901
CP031649.1\|AYP22899.1\|1720716_1721517_+\|cystine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|183061
CP031649.1\|AYP22895.1\|1717008_1717977_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379157
CP031649.1\|AYP22893.1\|1714030_1715341_+\|FliC/FljB-family-flagellin	unknown	unknown	gnl\|CDD\|235867
CP031649.1\|AYP22909.1\|1736821_1737355_-\|peptide-methionine-(S)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|376578
CP031649.1\|AYP22898.1\|1719616_1720603_+\|D-cysteine-desulfhydrase	unknown	unknown	gnl\|CDD\|179673
CP031649.1\|AYP22901.1\|1722181_1722934_+\|L-cystine-ABC-transporter-ATP-binding-protein-YecC	unknown	unknown	gnl\|CDD\|183063
CP031649.1\|AYP25013.1\|1737414_1737969_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|224766
CP031649.1\|AYP22904.1\|1729991_1731476_+\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|185317
CP031649.1\|AYP22908.1\|1735509_1736298_+\|phosphate-starvation-inducible-protein-PhoH	unknown	unknown	gnl\|CDD\|182529
CP031649.1\|AYP22894.1\|1715467_1716703_+\|lysine-N-methylase-fliB	unknown	unknown	unknown
CP031649.1\|AYP22902.1\|1723398_1724484_+\|acyltransferase	unknown	unknown	gnl\|CDD\|227104

Protein	Function_ID	Function_description	E-value
CP031649.1\|AYP22900.1\|1721516_1722185_+\|cystine-ABC-transporter-permease	gnl\|CDD\|185055	PRK15100, PRK15100, cystine ABC transporter permease.	6.16307e-149
CP031649.1\|AYP22897.1\|1718894_1719398_+\|flagella-biosynthesis-regulatory-protein-FliZ	gnl\|CDD\|183213	PRK11582, PRK11582, flagella biosynthesis regulatory protein FliZ.	2.16376e-118
CP031649.1\|AYP22906.1\|1732542_1733658_+\|iron-uptake-system-protein-EfeO	gnl\|CDD\|236677	PRK10378, PRK10378, inactive ferrous ion transporter periplasmic protein EfeO; Provisional.	0
CP031649.1\|AYP22910.1\|1738291_1739350_-\|two-component-system-sensor-histidine-kinase-PmrB	gnl\|CDD\|236751	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB.	0
CP031649.1\|AYP22911.1\|1739346_1740027_-\|response-regulator	gnl\|CDD\|182612	PRK10643, PRK10643, two-component system response regulator PmrA.	7.55838e-133
CP031649.1\|AYP22907.1\|1733660_1734938_+\|deferrochelatase/peroxidase-EfeB	gnl\|CDD\|273606	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme. This model represents a small family of proteins with a typical Tat (twin-arginine translocation) signal sequence, suggesting that the family is exported in a folded state, perhaps with a bound redox cofactor. Members of this family show homology to Dyp, a dye-decolorizing peroxidase from Geotrichum candidum that lacks any typical heme-binding site.	0
CP031649.1\|AYP22903.1\|1725592_1729540_-\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
CP031649.1\|AYP22905.1\|1731665_1732490_+\|FTR1-family-protein	gnl\|CDD\|272930	TIGR00145, Uncharacterized_protein_slr0964, FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species. [Unknown function, General].	2.09787e-83
CP031649.1\|AYP22896.1\|1718121_1718844_+\|RNA-polymerase-sigma-factor-FliA	gnl\|CDD\|235901	PRK06986, fliA, flagellar biosynthesis sigma factor; Validated.	5.38e-131
CP031649.1\|AYP22899.1\|1720716_1721517_+\|cystine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|183061	PRK11260, PRK11260, cystine ABC transporter substrate-binding protein.	0
CP031649.1\|AYP22895.1\|1717008_1717977_+\|HNH-endonuclease	gnl\|CDD\|379157	pfam13391, HNH_2, HNH endonuclease.	1.52193e-06
CP031649.1\|AYP22893.1\|1714030_1715341_+\|FliC/FljB-family-flagellin	gnl\|CDD\|235867	PRK06819, PRK06819, FliC/FljB family flagellin.	4.01222e-135
CP031649.1\|AYP22909.1\|1736821_1737355_-\|peptide-methionine-(S)-S-oxide-reductase	gnl\|CDD\|376578	pfam01625, PMSR, Peptide methionine sulfoxide reductase. This enzyme repairs damaged proteins. Methionine sulfoxide in proteins is reduced to methionine.	1.4969e-87
CP031649.1\|AYP22898.1\|1719616_1720603_+\|D-cysteine-desulfhydrase	gnl\|CDD\|179673	PRK03910, PRK03910, D-cysteine desulfhydrase; Validated.	0
CP031649.1\|AYP22901.1\|1722181_1722934_+\|L-cystine-ABC-transporter-ATP-binding-protein-YecC	gnl\|CDD\|183063	PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional.	3.11789e-171
CP031649.1\|AYP25013.1\|1737414_1737969_-\|flavin-reductase-family-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	1.81007e-28
CP031649.1\|AYP22904.1\|1729991_1731476_+\|sodium/proline-symporter-PutP	gnl\|CDD\|185317	PRK15419, PRK15419, sodium/proline symporter PutP.	0
CP031649.1\|AYP22908.1\|1735509_1736298_+\|phosphate-starvation-inducible-protein-PhoH	gnl\|CDD\|182529	PRK10536, PRK10536, phosphate starvation-inducible protein PhoH.	0
CP031649.1\|AYP22902.1\|1723398_1724484_+\|acyltransferase	gnl\|CDD\|227104	COG4763, COG4763, Predicted membrane protein [Function unknown].	5.95813e-24

>CP031649.1|AYP22902.1|1723398_1724484_+|acyltransferase
MNQTKSDQILWVDTLKGACILLVVLYHTVLPGFEGTMKYLSAGWIPAEIWIQFNTVLSPLRMPAFFFVSGLLATNGILNRPWKQVFTSRITNLFYLYILWGFIQWWSIIGISTEITGQRISQNLNAAYAGSLFEFLKLTFMAMSTSWYLYGLGLYFLCAKVFRQYKLALVAVAILLNYLAAEKVIPFWGPQSLAQYFVFFLLGAFWSQTMLRLSEWRRENLMPWALLAAAAGIHVLFGLDKSLFLCVLAVLFSIAACRWLNQHFSMRYLNWVGRNTLQIYVIHRIFIEFFGMSAILFAQRHHLFEQAWFSFLWACFYPVAIVGLCSLCSVAIWSLTNRGVGQSLFVFPTLMKRAPGGASGG
>CP031649.1|AYP22901.1|1722181_1722934_+|L-cystine-ABC-transporter-ATP-binding-protein-YecC
MSAIEVRKLVKSFNGQTVLHDIDLDVAAGEVVAIIGPSGSGKTTLLRSINLLEVPDSGTIRVGEITVDAALAQSKQKEQVRRLRQQVGFVFQNFNLFPHRSVMENIIEGPVIVKGEAKADAVARARTLLEKVGLHGKEESYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLSTIRALAEEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGEAKALFSNPQQPRTRQFLDKFLNQ
>CP031649.1|AYP22900.1|1721516_1722185_+|cystine-ABC-transporter-permease
MQESLQLVLDSAPFLLKGALFTLQLSIGGMFFGLLLGFILALMRLSRFWPVRWLARIYVSIFRGTPLIAQLFMIYYGLPQFGIELDPIPSAMIGLSLNTAAYASESLRGAISSIERGQWEAAASIGMTRWQTLRRVILPQAARTALPPLGNSFISLVKDTSLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNRLEQHVNRQDSESK
>CP031649.1|AYP22899.1|1720716_1721517_+|cystine-ABC-transporter-substrate-binding-protein
MSFSRAGRQMMMGVMAVALIAGVNVKTFAAENLLNKIKERGTLLVGLEGTYPPFSFQDEKGKLTGFEVEFAEQLAQHMGVKASLKPTKWDGMLASLDAKRIDVVINQVTISDERKKKYDFSTPYTVSGIQALTMKANANTITKPADLAGKKVGVGLGTNYEQWLRENVKGVDIRTYDDDPTKYQDLRSGRLNAILVDRLAALDLVKKTGDTMAVAGDAFSRQESGVAVRKGNEDLLKAIDQAIAEMQKDGSLSKLSQKWFGADVTK
>CP031649.1|AYP22898.1|1719616_1720603_+|D-cysteine-desulfhydrase
MSLHLLHQFPRLELLGAPTPLEHLPRLSDYLGRDIFIKRDDFTPVAMGGNKLRKLEFLAADALREGADVLLTAGAIQSNHVRQTAAVAARLGLKCVALLENPIGTHAENYLSNGNRLLLDLMDAEVVMVDALNNPAEQLAEQATRLEAQGYRPYIVPVGGSNALGALGYVECAQEIAHQSEGVVDFAAVVVASGSAGTHAGLAVGLEHLLPETELVGVTVSRQVEAQLPLVERLRQSLAETLEVQAKAPINLWDDYFAPRYGEPNDEGMAAVKLLARLEGILLDPVYTGKAMAGLLDGVSQNRFRREGPLLFIHTGGAPALFAYHPSV
>CP031649.1|AYP22897.1|1718894_1719398_+|flagella-biosynthesis-regulatory-protein-FliZ
MGAKTKARPLSRYLKDYKHSQSNCSHCGKVLDRMALVFRGQIINKEAIARMDQMIDEQLWLKLQPELTALCRFCSDIFCNTHPNYFDIMAFKQYLFEQTEMSPSTIREYVVRLRRLDEMLKARNFPADRLQGNSWHQCLESDLPDAGNNNYRIALRKYDQFLGWQQG
>CP031649.1|AYP22896.1|1718121_1718844_+|RNA-polymerase-sigma-factor-FliA
MNDFYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVAGAMHRVEQSLGRSASEQEVAQQLNVSMEEYRQILLDTNNSQLFSYDEYREEHGDSAELVTEGHEEANPLHQLLEGSLRERVIEAIEALPDREKMVLTLYYQEELNLKEIGAVLDVGESRVSQLHSQAIKRLRARLAGAR
>CP031649.1|AYP22895.1|1717008_1717977_+|HNH-endonuclease
MRFNYDLLPGERLTFEEIARRYALQYPDDKELTARALLSPSTGLRTLKIRAVFAQEESNSPLEDLLFISHDNERKNYLRRFEHYLKQNLSFLYFRRSDSEKRDNLWKVMGSSQVFAMIDPQSATAQNLLNSRGYKLVLMHQDDEDAYWQLFNPQADPCFPQSQRIQFIVVLSTPQHKVPAAVMPGTEVGRRVKARVLQRASQAEFSAGVKARYGACVMTGTELTERHNWPWVEACHIDTQEGDDGVLADNSIDNGLFLRSDLQRLFINRLISIDGESGEILVHPGEEAQQHLAPWYQELEGRICSLWAAVPPATRQRLRARR
>CP031649.1|AYP22894.1|1715467_1716703_+|lysine-N-methylase-fliB
MLFSTLVEQVKMKNITVVEPLFVTAFKCIGSECRDHCCKGWNINLDKPTVRRYLKSSQIEIKTLATENIVITRKSFVNWGTMKLNSSGNCAFMDEDLLCKVHSSLGAVALSNTCATYPRAARNFKYEQQKTLMLSCPEATRQLLASPEAMLFEQTTQTQAEGNKGKDLDQQKKLLNLMCLNIVKMSGERLDEAMYALASFLLGADKLNPGGDWLEQMERHFSGVLNSLAQGQIRQQLDQIKPDHNLQWSLLLRLQTWFGGMTYMRAFPTLDHYLNKLIYILSEGAKTDDVSQPMIRLDNVWQKQVMPWLAERPWIMNNYIQYRIYDDFFPNNENRSPLLSLYLLTAEWFLLKSLIAANVELVGTVSEEDIINIIYSYHSITKHTPQSVMAFLAEIDKVKVNDDLSLIYLLK
>CP031649.1|AYP22893.1|1714030_1715341_+|FliC/FljB-family-flagellin
MAQVINTNSLSLITQNNINKNQSALSTSMERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISAAQTTEGALSEINNNLQRVRELTVQAQNGTNSDSDLGSIQDEIKSRLGEIDRVSGQTQFNGVNVLAKDGAMKIQVGANDGETISIDLKKIDSSTLGLSGFSVSKNSLSISEPITQINGAAAAAPVKVDLSSAATDLKVDASTLTLSNVLNKDGTASATYVVKSGSDTYAASVDRDSGKVILNKADVDYTDSDNGLTTAATQAGQLVKVSADKDGNATAYVTFQGKNFAAVAASQVDTGDDSAANQTTAATTNKVTVALSGAGKTAEFAGAATNDPLAMLDKAIASVDTFRSSLGAVQNRLNSAVTNLNNTTTNLSAAQSRIQDADYATEVSNMSKAQIVQQAGNSVLSKANQVPQQVLSLLQG
>CP031649.1|AYP22903.1|1725592_1729540_-|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MATTTMGVKLDDATRERIKLAAQRIDRTPHWLIKQAIFNYLGQLETGDTVPEIPLSAQAAAESDDTQPEETHQPFLDFAEQILPQSVTRSAVTAAWRRPETDAVPMMLEQARLPAALAEKTHQLAYQLADKLRHQKGATGRAGMVQSLLQEFSLSSHEGVALMCLAEALLRIPDKPTRDALIRDKISNGNWQSHLGRSPSLFVNAATWGLLFTGRLVSTHNESNLSSSLNRIIGKGGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAGDAKAYLLSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYERVMEELYPILKSLTLLARSYDIGINIDAEEADRLELSLDMLEKLCFEPELEGWNGIGFVIQAYMKRCPFVIDELIDLAQRSRRRLMIRLVKGAYWDSEIKRAQMEGLEGYPVYTRKVYTDISYLACARKLLAVPSLIYPQFATHNAHTLAAIYQLAGNNYYPGQYEFQCLHGMGEPLYEQVVGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPIDELVTDPVSAVEKLGASEGAIGLPHPKIPLPRDLYGDNRVNSAGLDMANEHRLASLSSALLSSAAQPCLAEPMIDGEAGAGELRDILNPAAPGDRVGQVREATEQEVSVALDAAVNSGPIWFATPPQERAAILERAAQIMEGQMQQLLGILVREAGKTYNNAIAEVREAVDFLYYYAGMVRDDFDNETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQAVQILLDAGVPPGVLQLLPGQGETVGAQLTGDVRVRGVMFTGSTAVATLLQRNLAGRLDQHGRPVPLIAETGGMNAMIVDSSALTEQVVIDIVASAFDSAGQRCSALRLLCIQEDVADHTLKMLRGAMAECRMGNPERFSTDIGPVIDAEAKANIDRHIQAMRNKGFTVYQAVQENPQDSKEWNSGTFVKPTLIELDQVSDLDKEIFGPVLHVVRFTRNNLPQLVEQINASGYGLTLGVHTRIDETIAQVTANARVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLAHRPDSALRLTFDRQDAERPADSTLRQSLLAPHLALSNWAKDKPELAELCQHYGDLAQAGVVRLLPGPTGERNTFSLLPRDQVLCLADNEQDALIQLAAVTSVGSKALWQDDELHRALLASMPDAVKARITLARDPLAAEFDAVIYHGDADQLRTLCEQIAAREGAIVSVQGFARGETNLLLERLLIERSLSVNTAAAGGNASLMTIG
>CP031649.1|AYP22904.1|1729991_1731476_+|sodium/proline-symporter-PutP
MSVSTPLLVTFLVYILGMVLIGFVAYRSTKNFDDYILGGRSLGSVVTALSAGASDMSGWLLMGLPGAIFISGISESWIAIGLTIGAWLNWKIVAGRLRVQTEHHNNALTLPDFFTSRFEDHSKILRVISAIVILVFFTIYCASGVVAGARLFESTFGMSYQTALWAGAAATILYTLVGGFLAVSWTDTVQASLMIFALILTPVFVIIAVGGWSDSLAVIEAKSLENLDMLKGLNFVAVISLLGWGLGYFGQPHILARFMAADSHRSIRTARRIGMTWMVLCLAGAVAVGFFGIAYFQNNPTLAVGVNANAERVFIELARILFNPWIAGILLSAILAAVMSTLSCQLLVCSSALTEDLYKGLLRKNASQKELVWVGRLMVLLVALIAIALAANPENRVLGLVSYAWAGFGAAFGPVVLFGVCWKRMNRNGALAGMIVGALTVLVWKQYGWLGLYEIIPGFIFASIAIVVFTLMGREPSAEAQQRFAAAEAEFQTK
>CP031649.1|AYP22905.1|1731665_1732490_+|FTR1-family-protein
MFVPFLIMLREGLEAALIVSLIASYLKRTQRTQWFPAMWAGVFIAAGLCLGLGLFINATTGEFPQKEQELFEGIVALIAVVILTSMVFWMRKVARNIRVELEQAVDQALQRSGRGGLALVLMVFLAVAREGLESVFFLLAAFTQDVGYAPPIGAVLGLATAVVLGMLLYWGGIRLNMAHFFRWTSVFILFVAAGLAAGAIRAFHEAGLWNRFQDVAFDLSNTLSTHSLFGTLLEGVLGYQESPSVSEVTVYFAYLIPALILFFMPARSAASATV
>CP031649.1|AYP22906.1|1732542_1733658_+|iron-uptake-system-protein-EfeO
MTMRFRRKALLLPLLAISATAAAAVPQVTVSVTDKQCEPMSLTVKAGKTQFLIKNNSQKALEWEILKGVMVVEERENIAPGFSQKLTANLEAGEYEMTCGLLSNPKGKLIVQAGEGAAKSGTSARMQLEGPITEYKAYVTDQVKQLVSNTQAFTDAVKAGDVEKAKALFAPTRQYYERIEPIAELFSDLDGSIDAREDDYEKKAADPKFTGFHRLEKALFADNSTKGMADYAEQLNKDVKDLQVRISELAFPPAKVVGGAAGLIEEVASSKISGEEDRYSRTDLWDFQANIDGAQKIVELLRPMVSKANPQLLAKVDANFKKVDAILSKYRTQIGFESYEKLTSADRNALKGPITALAEDLSLLRGTLGLD
>CP031649.1|AYP22907.1|1733660_1734938_+|deferrochelatase/peroxidase-EfeB
MSRKEDDAQPARRRLLKGLGLLGGAAALGGGCPFHAAAADSFSPGTVTPQARQQMQPFYGQHQAGITTPQQASMMLVAFDLLSSDKTELVRLFRLLTQRIAFLTTGGPAPVVTNPRLPPMDSGILGATIAPDNLTITVSVGNSLFDERFGLAPHKPKKLQPMTRFPNDSLDASQCHGDLLLQFCANTQDTVIHALRDIIKHTPDLLGVRWRREGFISDHAARSQGQETPINLLGFKDGTANPDTHNPALMNQLLWVTDDQDEPVWARNGSYQAVRLIRFHVEMWDRTPLGEQQTIFGREKLSGAPLGMQHERDVPDYARDPDGEVIALDAHIRLANPRTPETASSLMLRRGYSYSAGISASGQLEMGLLFVCYQHDLERGFLTVQRRLNGEALEEYIRPFGGGYFFVLPGVPDASHYLAQSLLEA
>CP031649.1|AYP22908.1|1735509_1736298_+|phosphate-starvation-inducible-protein-PhoH
MGRQKAVIKARREARRVLRSDSRSHRQREEESVTSLVHMSGLDAIGMARDTRDRLPIEARNEAQAHYLNAIERKQLIFATGEAGCGKTWISAAKAAEALINKDIDRIIVTRPVLQADEDLGFLPGDISEKFAPYFRPVYDILVKRLGASFMQYCLRPEIAKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLPAGVPSGLADALARFEEDEMVGIVRFGKEDCVRSALCQRTLHAYS
>CP031649.1|AYP22909.1|1736821_1737355_-|peptide-methionine-(S)-S-oxide-reductase
MAIEYAVIAGGCFWCTEAVFKDVIGVESVESGYTGGARPNPTYEQVCSGATGHAEAIRIGFDPEKVSFGDLLDISFVTHDPTQLNRQGNDIGTQYRSAIFPANAEQEAEARAAIARAQVDHDVPVVTTIEPLKEWYPAEAYHQDYWEGAGQRNGYCMAVIPPKLQKLRKSFANRVKS
>CP031649.1|AYP25013.1|1737414_1737969_-|flavin-reductase-family-protein
MHKYAFPVSKARKYLEPGPVLLLSSQYKDQHDIMTLGWHTVLEFSPSLVGCMIAGMNHSHELIRNSGQCVLNIPSASLIDEVVAIGNSHGDSIDKFEAFGLTPEPAQVVGAPMIAECFASFECQLYDDSMVANYNLFIFEIVKAHVAEQPEYPTTLHYTGEGRFSVMSDKILDKSGDFKPEMLI
>CP031649.1|AYP22910.1|1738291_1739350_-|two-component-system-sensor-histidine-kinase-PmrB
MIRRFDHRSMRFRLILTIGLILLVFQVISVVWLWHESKEQIQFLVEAQLQKRNMDSHVKREVHEAVASLAVPSLVMITLTLLLCYQAVKWITRPLYQLQRELESRSEENLDPVACHSQVQEIDAVTQAINQLVARLNSSLERERLFTADVAHELRTPLAGLRLHLELIERNSDVKVQPLVQRLDQMTHSVSQLLNLARAGQSFTSGTYQNVGLIEDVILPMEAELSIMLEAHQQTLILDLPHEQFVRGDATLLKMLLRNLVENAHRYSPDNSTISVQLVLAPQPMLVVEDQGPGIDESKSGELSKAFIRMDSRYGGIGLGLSIVSRIVQLHRFQFFLENRRDRSGCRAVVKF
>CP031649.1|AYP22911.1|1739346_1740027_-|response-regulator
MKILIVEDDALLLQGLMLALEGEGYVCDGVTRVRDAEAHFASGLYSLVVLDLGLPDEDGLHFLIRLRRQKKMTPVLILTARDTISERIAGLDAGADDYLIKPFSLDELLARIRALIRRHVNQGDSHVRVGALALDMTHRQITLSDVLLDLTPKEFAILSRLMLKAGNPVHREILYQDIYNWETEPSTNTLEVHIHNLRDKIGKSAIRTVRGFGYALVTQDGAREAT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031649_3	3.1\|3137132\|36\|CP031649\|CRISPRCasFinder	3137132-3137167	36	NZ_CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	450705-450740	3	0.917
CP031649_3	3.1\|3137132\|36\|CP031649\|CRISPRCasFinder	3137132-3137167	36	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	539547-539582	3	0.917
CP031649_3	3.1\|3137132\|36\|CP031649\|CRISPRCasFinder	3137132-3137167	36	NZ_CP016890	Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence	15104-15139	3	0.917
CP031649_3	3.1\|3137132\|36\|CP031649\|CRISPRCasFinder	3137132-3137167	36	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	267195-267230	3	0.917
CP031649_3	3.1\|3137132\|36\|CP031649\|CRISPRCasFinder	3137132-3137167	36	NC_014258	Pantoea vagans C9-1 plasmid pPag3, complete sequence	116013-116048	3	0.917
CP031649_3	3.1\|3137132\|36\|CP031649\|CRISPRCasFinder	3137132-3137167	36	NZ_CP016890	Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence	160153-160188	4	0.889

1. spacer 3.1|3137132|36|CP031649|CRISPRCasFinder matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 3, identity: 0.917

cggctacgggcgcacctcagggatgaggtgcgtact	CRISPR spacer
cgggaacgggcgcacctcagggatgaggtgcgtaat	Protospacer
***  ***************************** *

2. spacer 3.1|3137132|36|CP031649|CRISPRCasFinder matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 3, identity: 0.917

cggctacgggcgcacctcagggatgaggtgcgtact	CRISPR spacer
cgggaacgggcgcacctcagggatgaggtgcgtaat	Protospacer
***  ***************************** *

3. spacer 3.1|3137132|36|CP031649|CRISPRCasFinder matches to NZ_CP016890 (Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.917

cggctacgggcgcacctcagggatgaggtgcgtact	CRISPR spacer
cgggaacgggcgcacctcagggatgaggtgcgtaat	Protospacer
***  ***************************** *

4. spacer 3.1|3137132|36|CP031649|CRISPRCasFinder matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 3, identity: 0.917

cggctacgggcgcacctcagggatgaggtgcgtact	CRISPR spacer
cgggaacgggcgcacctcagggatgaggtgcgtaat	Protospacer
***  ***************************** *

5. spacer 3.1|3137132|36|CP031649|CRISPRCasFinder matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 3, identity: 0.917

cggctacgggcgcacctcagggatgaggtgcgtact	CRISPR spacer
cgggaacgggcgcacctcagggatgaggtgcgtaat	Protospacer
***  ***************************** *

6. spacer 3.1|3137132|36|CP031649|CRISPRCasFinder matches to NZ_CP016890 (Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.889

cggctacgggcgcacctcagggatgaggtgcgtact	CRISPR spacer
ccggaacgggcgcacctcagggatgaggtgcgtaat	Protospacer
* *  ***************************** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

882614 : 890637

uncultured_Mediterranean_phage(33.33%)

integrase

attL 875629:875641|attR 897168:897180

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
875629:875641	attL	NA	NA	NA	NA
AYP22227.1\|882614_883376_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.9e-66	53.3
AYP22228.1\|883369_883996_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	9.7e-36	49.1
AYP22229.1\|884158_885259_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.8e-05	35.2
AYP22230.1\|885316_886309_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.6e-32	37.6
AYP22231.1\|886448_889010_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.6e-28	22.1
AYP22232.1\|889167_890637_+\|integrase	integrase	A0A0R6PGY7	Moraxella_phage	2.4e-24	28.1
897168:897180	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1485462 : 1495865

Synechococcus_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYP22694.1\|1485462_1486365_+	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	4.8e-44	39.6
AYP22695.1\|1486407_1487421_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	2.9e-74	43.1
AYP22696.1\|1487508_1488663_-	acyltransferase	Q9MC93	Pseudomonas_phage	4.3e-05	29.5
AYP22697.1\|1488705_1489569_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	3.0e-112	67.7
AYP25003.1\|1489568_1490651_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.8e-96	51.6
AYP25004.1\|1491197_1491524_+	hypothetical protein	A0A222YXE6	Synechococcus_phage	2.1e-13	37.4
AYP22698.1\|1491525_1492281_+	glycosyl transferase family 2	A0A1D8KNV9	Synechococcus_phage	8.4e-58	48.5
AYP22699.1\|1492283_1493927_+	glycosyltransferase	NA	NA	NA	NA
AYP22700.1\|1494079_1494946_+	hypothetical protein	NA	NA	NA	NA
AYP22701.1\|1494932_1495865_+	NAD-dependent epimerase/dehydratase family protein	M4R1H4	Synechococcus_phage	2.3e-12	23.8

DBSCAN-SWA_3

2304498 : 2314721

Bacillus_phage(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYP23405.1\|2304498_2304957_-	endopeptidase	A0A217EQL1	Bacillus_phage	5.5e-12	37.5
AYP23406.1\|2305025_2305775_-	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	NA	NA	NA
AYP23407.1\|2305775_2306321_-	glutathione peroxidase	A0A1S7DM81	Molluscum_contagiosum_virus	3.5e-13	37.4
AYP23408.1\|2306371_2307355_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
AYP23409.1\|2307534_2307837_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.3e-13	40.0
AYP23410.1\|2307841_2310229_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	4.1e-10	32.0
AYP23411.1\|2310243_2311227_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	2.2e-34	37.6
AYP23412.1\|2311541_2311898_-	50S ribosomal protein L20	NA	NA	NA	NA
AYP23413.1\|2311940_2312138_-	50S ribosomal protein L35	NA	NA	NA	NA
AYP23414.1\|2312237_2312789_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.4e-15	32.4
AYP23415.1\|2312792_2314721_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.7e-126	36.9

DBSCAN-SWA_4

3202668 : 3210394

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYP24203.1\|3202668_3203139_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.2e-30	48.7
AYP24204.1\|3203229_3204330_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.1e-47	34.6
AYP24205.1\|3204333_3204783_-	transcriptional regulator NrdR	NA	NA	NA	NA
AYP24206.1\|3204971_3205409_+	peptidoglycan-binding protein LysM	G3MBQ1	Bacillus_virus	7.3e-06	50.0
AYP24207.1\|3205425_3205995_+	DUF3251 domain-containing protein	NA	NA	NA	NA
AYP24208.1\|3206061_3207030_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	3.6e-45	39.9
AYP24209.1\|3207040_3208888_-	protein translocase subunit SecD	NA	NA	NA	NA
AYP24210.1\|3208913_3209246_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	5.7e-11	36.3
AYP24211.1\|3209245_3210394_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.9e-90	46.4

DBSCAN-SWA_5

3272407 : 3281778

Streptococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYP24266.1\|3272407_3272620_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	9.3e-23	71.4
AYP24267.1\|3273001_3274756_-	amylovoran biosynthesis protein AmsF	A0A1S6L3G8	Erwinia_phage	1.7e-154	46.4
AYP24268.1\|3274959_3275253_-	hypothetical protein	NA	NA	NA	NA
AYP24269.1\|3275249_3275597_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	4.1e-20	45.6
AYP24270.1\|3275593_3276061_-	lysozyme	H9C148	Vibrio_phage	6.8e-26	44.0
AYP24271.1\|3276265_3276544_-	hypothetical protein	NA	NA	NA	NA
AYP24272.1\|3276967_3277699_-	chromophore lyase	A0A2I6PIE7	Escherichia_phage	1.1e-46	37.1
AYP24273.1\|3278059_3279313_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	5.1e-92	44.6
AYP24274.1\|3279323_3280427_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.7e-59	42.4
AYP24275.1\|3280665_3281778_+	porin	Q1MVN1	Enterobacteria_phage	6.7e-112	57.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP031650

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP031650_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031650_1

1438-1616

Orphan

Consensus_repeat	Method
TACTGATTACAGTGAACGTTCT	PILER-CR

2 spacers

The CRISPR arrays of CP031650_1

>merge|CP031650|1|1438-1616|PILER-CR
TACTGACTACAGTGAATGTCTGCTGATGGGCACTATCCTTGCCTCACCATTGAATCTCTTTAACGGCTTTCCGAATCACTACTGATTACAGTGAACGTTGTTGCCAGATGCCCGGTCTGAGGCGAGTCATAACTGCCATGGCGGGATGCTAATCTTGTACTGATTACAGTGAACGTTCT

>CP031650|1|1|1438-1616|PILER-CR
TACTGACTACAGTGAATGTCTG	CTGATGGGCACTATCCTTGCCTCACCATTGAATCTCTTTAACGGCTTTCCGAATCACTACTGA
TTACAGTGAACGTTGTTGCCAG	ATGCCCGGTCTGAGGCGAGTCATAACTGCCATGGCGGGATGCTAATCTTGTACTGA
TTACAGTGAACGTTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP031650.1\|AYP25567.1\|2737_3937_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|376033
CP031650.1\|AYP25111.1\|10231_11134_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
CP031650.1\|AYP25107.1\|6064_7075_-\|transketolase-family-protein	unknown	unknown	gnl\|CDD\|226467
CP031650.1\|AYP25110.1\|9284_10034_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
CP031650.1\|AYP25105.1\|0_930_+\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	unknown
CP031650.1\|AYP25109.1\|7931_9230_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
CP031650.1\|AYP25106.1\|3944_4916_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|370113
CP031650.1\|AYP25112.1\|11333_12785_+\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
CP031650.1\|AYP25114.1\|13709_15209_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|225176
CP031650.1\|AYP25108.1\|7076_7919_-\|transketolase	unknown	unknown	gnl\|CDD\|238970
CP031650.1\|AYP25113.1\|13130_13691_+\|phospholipid:lipid-A-palmitoyltransferase	unknown	unknown	gnl\|CDD\|236829

Protein	Function_ID	Function_description	E-value
CP031650.1\|AYP25567.1\|2737_3937_+\|ParA-family-protein	gnl\|CDD\|376033	pfam18607, HTH_54, ParA helix turn helix domain. The accurate segregation of DNA is essential for the faithful inheritance of genetic information. Segregation of the prototypical P1 plasmid par system requires two proteins, ParA and ParB, and a centromere. When bound to ATP, ParA mediates segregation by interacting with centromere-bound ParB, but when bound to ADP, ParA fulfills a different function: DNA-binding transcription autoregulation. ParA consists of an elongated N-terminal alpha-helix which mediates dimerization, a winged-HTH and a Walker-box containing C-domain. This entry describes the N-terminal alpha helix domain combined with the winged HTH region.	8.72058e-55
CP031650.1\|AYP25111.1\|10231_11134_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	1.45219e-64
CP031650.1\|AYP25107.1\|6064_7075_-\|transketolase-family-protein	gnl\|CDD\|226467	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	6.89696e-138
CP031650.1\|AYP25110.1\|9284_10034_-\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	4.55376e-87
CP031650.1\|AYP25113.1\|13130_13691_+\|phospholipid:lipid-A-palmitoyltransferase	gnl\|CDD\|236829	PRK11045, pagP, lipid IV(A) palmitoyltransferase PagP.	3.313e-96
CP031650.1\|AYP25109.1\|7931_9230_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.67612e-101
CP031650.1\|AYP25106.1\|3944_4916_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|370113	pfam08775, ParB, ParB family. ParB is a component of the par system which mediates accurate DNA partition during cell division. It recognizes A-box and B-box DNA motifs. ParB forms an asymmetric dimer with 2 extended helix-turn-helix (HTH) motifs that bind to A-boxes. The HTH motifs emanate from a beta sheet coiled coil DNA binding module. Both DNA binding elements are free to rotate around a flexible linker, this enables them to bind to complex arrays of A- and B-box elements on adjacent DNA arms of the looped partition site.	8.80772e-50
CP031650.1\|AYP25112.1\|11333_12785_+\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.32443e-124
CP031650.1\|AYP25114.1\|13709_15209_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	3.09009e-23
CP031650.1\|AYP25108.1\|7076_7919_-\|transketolase	gnl\|CDD\|238970	cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.	1.47885e-124

>CP031650.1|AYP25105.1|0_930_+|RepB-family-plasmid-replication-initiator-protein
MADKDNENKALLEPFLSVTKNSGEVIQLHPNKNNTVQPVALMRLGLFVPTLKSTARGKSGAMASTDATKELKNLTLVKAEGYEKITITGARLDMDNDFKTWAGIIQSFSRYPTKGDTVTLPFIDFVKMCGIPSANSSAALRKRLDASLRRIATNTLSFEGNGKAYHTHLVQSAYYDREKDIVRIQADPKLFELYNFDHKVLLQLRAISRLKRKESAQALYTFLESLPTNPAPISLARLRMRLNLGSKTTTQNHVVRRAMEQLKEIGYLDYSEVKRGRSVFFIIHSRTPKLDGISNLESIDSLDEIEFDD
>CP031650.1|AYP25567.1|2737_3937_+|ParA-family-protein
MANDDKQVMKVAQRSERMLLSLTEQIQAQKQELHENTYYQVYAKAALAKLPKLTRASVDYAVNEMEESGYQFDKRAAGSSVKYAMSIQNIIDIYHHRGVPKYRDRHSDAYTLFVGNLKGGVSKTVSTVSLAHALRAHPHLLFEDLRILVIDLDPQSSATMFLNHERSVGLVEATAAQAMLQNVSRDELVNEFIVPSIIPGVDVLPASIDDAFIASSWDQLCAEHLPQQNVHAVLYDNVIAKLKKDYDFIFIDSGPHLDAFLKNAIAASDLLMTPVPPAQVDFHSTLKYLTRLPELIAIIEDSGATCRLQGNIGFMSKLSNKADHKLCHSLAKEIFGGDMLDAALPRLDGFERCGESFDTVISANPSTYVGSSEALKNARSAAEDFAKAVFDRIEFIRLN
>CP031650.1|AYP25106.1|3944_4916_+|ParB/RepB/Spo0J-family-partition-protein
MSAKRITIGRTFSQTPLENDTPDSQHNQTFVLATGKRALFRFERIAASDVESKTFVTMETNGRDQAGLTPDSLRDIIRTIKLQQFFPAIGVMRDDRIEILDGSRRRAAALYCKTGLDVLITDAAITADEARRLAQDIQTAREHNLREVGMRLLTLKDGGLSQKEIAENQGLSQAKVTRALQAASVPSDLISLFPNHAELTYPDYKALLQAADKLSESGQSVEALIKSISREIDVVCAREGLAEDELKNHILRLIRQGSQTLIKEPEKDKTQATALWSFADKDRFARKKVRGRMFSYEFNRQSKELQEELDKVIAETLKKYLNP
>CP031650.1|AYP25107.1|6064_7075_-|transketolase-family-protein
MSSQPQKKRLTTSAMIASIAAEGQPTVSAPFGHALVSLAEQRSDVVGLTADLSKYTDLHLFAEAFPKRFYQMGMAEQLLMSAAAGMAREGFMPFVTTYAVFASRRAYDFICMAIAEENLNVKIACALPGLTTGYGPSHQATDDLAIFRGMPNLTIIDPCDALEISQVIPAIAEHQGPVYLRLLRGKVPLVLDKYDYRYQHGKAQRLRGGKHAIIISSGLMTMRALEAAEALEKQGIEVGVVHSPMIKPLDEETILREAGVALHHNQLVITAENHSITGGLGEAIAGLLMRNHVTPRFKQIALPDAFLAAGALPTLHDRYGISTDAMVKQITAWLEA
>CP031650.1|AYP25108.1|7076_7919_-|transketolase
MTDSRHASHVLSLQQRATNIRRHALLMGQIQGQGYIGQALGAADLLAVSYFHAMNYRPDQPEWEDRDRFYLSIGHYAIALYAALLEAGVIPEEERETYGTDESRLPMSGMAAYTPGMEITGGSLGHGLGIAVGACLGLKQKGSQARVYNLLSDGELNEGSTWEAAMSASHWQLDNLIALIDVNNQQADGHSSEILAFEPIVDRWQAFGWYTQRVDGNDISALQAAFDAARNWPEPQPRVIICDTRMGKGVPFLESREKTHFIRVDADEWDKALTALEQGV
>CP031650.1|AYP25109.1|7931_9230_-|MFS-transporter
MTTLNLSAASAARDITYRKIAWRLMPWLMLCYLCAYLDRVNVGFAKLQMMDDLSLSETVYGLGAGIFFIGYFFFEVPSNLILHRVGARRWIARIMITWGIISALFAFVETAWQFYLLRFLLGVAEAGLAPGLLLYLTYWFPSHRRARMTVLWFVAIPLSGMIGGPLSGWIMATFAGFHGWAGWQWMFMLEAIPTLIMGLVVLLVLKDRVEQAEWLDEDEKRRVRADLDEDNQQKACHGTVKAFVADRRLWLLALIYFCVVMGQYALTFWLPTLVRNSGVSEPLHIGLLTSLPYLCAIIFMLLAGRSGDRYRERRWHLIVPMLIGLTGLTLATLLSHSVSLSLLSLCIAAAGILSASSLFWMLPTNLLGGVSAAAGIAAVNCIANLAGFFSPWLIGTITTATGTPASGMYFIAAVLLGGALCVLRIRAADVNR
>CP031650.1|AYP25110.1|9284_10034_-|SDR-family-oxidoreductase
MLLENKVAIITGAASQRGIGRATAACFAQHDARVVVLDLDLQAAQASAQSCGEGHLGLATDVTDPLSVRRAIDQVLEHFGRIDVLVNNAGITQPVKTLEIGIEDYNRILDVNLRGTLLMSQAVIPTMQQQKGGSIICLSSVSAQRGGGIFGGPHYSAAKAGVLGLTKAMAREFGPDQIRINALTPGLIQTDITGGLLQDERRHAILDGIPLGRLGSASDVANAALFLASDLSGYLTGITLDVNGGMLIH
>CP031650.1|AYP25111.1|10231_11134_+|LysR-family-transcriptional-regulator
MEKQSDHLPSIKSLRVFEQVAHFGNVARAAEELSITPSAASHQLAKLERELGCILFNRSAKGVVLTLSGEHYLREIGPILLSLTQATARISNEKARSNLRIHCAPSFGLLWLLPRIHKFRDSYPEFQLTLSCSYENLSFSRDNIDIAIRHGFPDWNSFEIKTIRHERMSVLASPEYLKKHPVNQAADLIHHALILSESPLIQWPQWFASQQLPQPDKEWLFRFDRSYMSLEAAMLGHGLIFESELLAEDYLRSGKLVRVLSEQESLPVSAHHLVFPRGFAQFPRVAHFLSWIQQELKVLT
>CP031650.1|AYP25112.1|11333_12785_+|sugar-porter-family-MFS-transporter
MSTNTPDSGEAGDHAPADTVRQRIFLVVLVATMGALAFGYDTGIISGALPYMTSPPDQGGLGLNSFTEGLVASSLVFGAAIGSFLSGFFSDRFGRRITLRSLAVIFVLGSLGTALAPSVNVMVAMRFLLGIAVGGGSSTVPVFIAEIAGPRLRAPLVSRNELMIVTGQLIAYVASTLLSYLLHDEHLWRYMLAIAMVPGLLLFIGTFFVPASPHWLVAEGRLKEAKKILKYLRETPREVRHEMAQMKKQARAAERGPDAKTLIREKWVIRLMVIGVGLGFVAQFTGVNGFMYYTPIILKQTGLGTSASIAATIGNGVVSVVAAIVGIWAVSRFPRRTMLITGLCLVVASQIMLGSVMTFIAPSLMQSYLALACILLFLFCMQMCISPVYWLMMSELFPMQLRGVLTGGAVSLQWIFNAIVAFGFPPIMEYAGSTTFFIFAAINVGSLIFVMAMVPETRGKSLEEIESHMKEKFGEKPKEAEAS
>CP031650.1|AYP25113.1|13130_13691_+|phospholipid:lipid-A-palmitoyltransferase
MKISTTTAVFAALLTAAPLHAENTPISSWWNGFTDDVAQTWNAPQHTDLYLPFISWHARFMYDKEKTDNYNENPWGGGLGISRYSDSGNWSALYAMAFKDSHNEWQPIVGYGWEKGWYPGSNQDFRLGAGLTAGITAREDFGNYIPLPIILPLFSAGYKALNVQFTYIPGTYNNGNVLFAWFRYAF
>CP031650.1|AYP25114.1|13709_15209_+|alpha/beta-fold-hydrolase
MTRRWKTVTRRLWRLAIVSGVLLLLLLIIRIYEAERGPELHRWHTWVPHELTVEQLDNATYADYLKAENHQFDEMKQQVSNRLDAEDKTPLNRYYAGSMIYPGHFAQDWNRSYILQPTGRPRGAVVLLHGLTDSPYSLRHVAEAYRQQGYVAVAIRLPGHGTVPAGLTDVDWQDWMAATRLAVREATRLAGTQTPLHLVGFSNGGALAIKYALDSLGDHTLRRPQQLILLSPMIGVTRFARFAGVAGLPSVFPAFSKTAWLNIVPEFNPFKYNSFPVHAARQTYLLTQALQKEILQYARNQQLSGFPPVLTFQSVMDSTVSTPSVIRSLYNYLPVNGSELVLFDINQAVSVSPLFRHSSYTAVNQLLPAARRNYSSTVITNASATSLEMVTKSVPAGEMQERIQPLAIAYPAGLYSLSHVAIPFPAEDGLYGSAPAQKNEFGISFGTLSLRGESAVLIVGLDSIMRATSNPFYPYMINRIDHHISCSDKRQLAACLSSF

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Crispr_ID: CP031650_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031650_2

1820-1932

Orphan

Consensus_repeat	Method
CTGATGCAGAACAGAATCGCCTCTGTCTACTTACTGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031650_2

>merge|CP031650|2|1820-1932|CRISPRCasFinder
CTGATGCAGAACAGAATCGCCTCTGTCTACTTACTGCTATCTACTGACTCATATTACGACCCCGTCGGCACGCGCTGATGCAGAACAGAATCGCTTCTGTCTACTTACTGCTA

>CP031650|2|1|1820-1932|CRISPRCasFinder
CTGATGCAGAACAGAATCGCCTCTGTCTACTTACTGCTA	TCTACTGACTCATATTACGACCCCGTCGGCACGCG
CTGATGCAGAACAGAATCGCTTCTGTCTACTTACTGCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP031650.1\|AYP25567.1\|2737_3937_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|376033
CP031650.1\|AYP25111.1\|10231_11134_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
CP031650.1\|AYP25107.1\|6064_7075_-\|transketolase-family-protein	unknown	unknown	gnl\|CDD\|226467
CP031650.1\|AYP25110.1\|9284_10034_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
CP031650.1\|AYP25105.1\|0_930_+\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	unknown
CP031650.1\|AYP25109.1\|7931_9230_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
CP031650.1\|AYP25106.1\|3944_4916_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|370113
CP031650.1\|AYP25112.1\|11333_12785_+\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
CP031650.1\|AYP25114.1\|13709_15209_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|225176
CP031650.1\|AYP25108.1\|7076_7919_-\|transketolase	unknown	unknown	gnl\|CDD\|238970
CP031650.1\|AYP25113.1\|13130_13691_+\|phospholipid:lipid-A-palmitoyltransferase	unknown	unknown	gnl\|CDD\|236829

Protein	Function_ID	Function_description	E-value
CP031650.1\|AYP25567.1\|2737_3937_+\|ParA-family-protein	gnl\|CDD\|376033	pfam18607, HTH_54, ParA helix turn helix domain. The accurate segregation of DNA is essential for the faithful inheritance of genetic information. Segregation of the prototypical P1 plasmid par system requires two proteins, ParA and ParB, and a centromere. When bound to ATP, ParA mediates segregation by interacting with centromere-bound ParB, but when bound to ADP, ParA fulfills a different function: DNA-binding transcription autoregulation. ParA consists of an elongated N-terminal alpha-helix which mediates dimerization, a winged-HTH and a Walker-box containing C-domain. This entry describes the N-terminal alpha helix domain combined with the winged HTH region.	8.72058e-55
CP031650.1\|AYP25111.1\|10231_11134_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	1.45219e-64
CP031650.1\|AYP25107.1\|6064_7075_-\|transketolase-family-protein	gnl\|CDD\|226467	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	6.89696e-138
CP031650.1\|AYP25110.1\|9284_10034_-\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	4.55376e-87
CP031650.1\|AYP25113.1\|13130_13691_+\|phospholipid:lipid-A-palmitoyltransferase	gnl\|CDD\|236829	PRK11045, pagP, lipid IV(A) palmitoyltransferase PagP.	3.313e-96
CP031650.1\|AYP25109.1\|7931_9230_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.67612e-101
CP031650.1\|AYP25106.1\|3944_4916_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|370113	pfam08775, ParB, ParB family. ParB is a component of the par system which mediates accurate DNA partition during cell division. It recognizes A-box and B-box DNA motifs. ParB forms an asymmetric dimer with 2 extended helix-turn-helix (HTH) motifs that bind to A-boxes. The HTH motifs emanate from a beta sheet coiled coil DNA binding module. Both DNA binding elements are free to rotate around a flexible linker, this enables them to bind to complex arrays of A- and B-box elements on adjacent DNA arms of the looped partition site.	8.80772e-50
CP031650.1\|AYP25112.1\|11333_12785_+\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.32443e-124
CP031650.1\|AYP25114.1\|13709_15209_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	3.09009e-23
CP031650.1\|AYP25108.1\|7076_7919_-\|transketolase	gnl\|CDD\|238970	cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.	1.47885e-124

>CP031650.1|AYP25105.1|0_930_+|RepB-family-plasmid-replication-initiator-protein
MADKDNENKALLEPFLSVTKNSGEVIQLHPNKNNTVQPVALMRLGLFVPTLKSTARGKSGAMASTDATKELKNLTLVKAEGYEKITITGARLDMDNDFKTWAGIIQSFSRYPTKGDTVTLPFIDFVKMCGIPSANSSAALRKRLDASLRRIATNTLSFEGNGKAYHTHLVQSAYYDREKDIVRIQADPKLFELYNFDHKVLLQLRAISRLKRKESAQALYTFLESLPTNPAPISLARLRMRLNLGSKTTTQNHVVRRAMEQLKEIGYLDYSEVKRGRSVFFIIHSRTPKLDGISNLESIDSLDEIEFDD
>CP031650.1|AYP25567.1|2737_3937_+|ParA-family-protein
MANDDKQVMKVAQRSERMLLSLTEQIQAQKQELHENTYYQVYAKAALAKLPKLTRASVDYAVNEMEESGYQFDKRAAGSSVKYAMSIQNIIDIYHHRGVPKYRDRHSDAYTLFVGNLKGGVSKTVSTVSLAHALRAHPHLLFEDLRILVIDLDPQSSATMFLNHERSVGLVEATAAQAMLQNVSRDELVNEFIVPSIIPGVDVLPASIDDAFIASSWDQLCAEHLPQQNVHAVLYDNVIAKLKKDYDFIFIDSGPHLDAFLKNAIAASDLLMTPVPPAQVDFHSTLKYLTRLPELIAIIEDSGATCRLQGNIGFMSKLSNKADHKLCHSLAKEIFGGDMLDAALPRLDGFERCGESFDTVISANPSTYVGSSEALKNARSAAEDFAKAVFDRIEFIRLN
>CP031650.1|AYP25106.1|3944_4916_+|ParB/RepB/Spo0J-family-partition-protein
MSAKRITIGRTFSQTPLENDTPDSQHNQTFVLATGKRALFRFERIAASDVESKTFVTMETNGRDQAGLTPDSLRDIIRTIKLQQFFPAIGVMRDDRIEILDGSRRRAAALYCKTGLDVLITDAAITADEARRLAQDIQTAREHNLREVGMRLLTLKDGGLSQKEIAENQGLSQAKVTRALQAASVPSDLISLFPNHAELTYPDYKALLQAADKLSESGQSVEALIKSISREIDVVCAREGLAEDELKNHILRLIRQGSQTLIKEPEKDKTQATALWSFADKDRFARKKVRGRMFSYEFNRQSKELQEELDKVIAETLKKYLNP
>CP031650.1|AYP25107.1|6064_7075_-|transketolase-family-protein
MSSQPQKKRLTTSAMIASIAAEGQPTVSAPFGHALVSLAEQRSDVVGLTADLSKYTDLHLFAEAFPKRFYQMGMAEQLLMSAAAGMAREGFMPFVTTYAVFASRRAYDFICMAIAEENLNVKIACALPGLTTGYGPSHQATDDLAIFRGMPNLTIIDPCDALEISQVIPAIAEHQGPVYLRLLRGKVPLVLDKYDYRYQHGKAQRLRGGKHAIIISSGLMTMRALEAAEALEKQGIEVGVVHSPMIKPLDEETILREAGVALHHNQLVITAENHSITGGLGEAIAGLLMRNHVTPRFKQIALPDAFLAAGALPTLHDRYGISTDAMVKQITAWLEA
>CP031650.1|AYP25108.1|7076_7919_-|transketolase
MTDSRHASHVLSLQQRATNIRRHALLMGQIQGQGYIGQALGAADLLAVSYFHAMNYRPDQPEWEDRDRFYLSIGHYAIALYAALLEAGVIPEEERETYGTDESRLPMSGMAAYTPGMEITGGSLGHGLGIAVGACLGLKQKGSQARVYNLLSDGELNEGSTWEAAMSASHWQLDNLIALIDVNNQQADGHSSEILAFEPIVDRWQAFGWYTQRVDGNDISALQAAFDAARNWPEPQPRVIICDTRMGKGVPFLESREKTHFIRVDADEWDKALTALEQGV
>CP031650.1|AYP25109.1|7931_9230_-|MFS-transporter
MTTLNLSAASAARDITYRKIAWRLMPWLMLCYLCAYLDRVNVGFAKLQMMDDLSLSETVYGLGAGIFFIGYFFFEVPSNLILHRVGARRWIARIMITWGIISALFAFVETAWQFYLLRFLLGVAEAGLAPGLLLYLTYWFPSHRRARMTVLWFVAIPLSGMIGGPLSGWIMATFAGFHGWAGWQWMFMLEAIPTLIMGLVVLLVLKDRVEQAEWLDEDEKRRVRADLDEDNQQKACHGTVKAFVADRRLWLLALIYFCVVMGQYALTFWLPTLVRNSGVSEPLHIGLLTSLPYLCAIIFMLLAGRSGDRYRERRWHLIVPMLIGLTGLTLATLLSHSVSLSLLSLCIAAAGILSASSLFWMLPTNLLGGVSAAAGIAAVNCIANLAGFFSPWLIGTITTATGTPASGMYFIAAVLLGGALCVLRIRAADVNR
>CP031650.1|AYP25110.1|9284_10034_-|SDR-family-oxidoreductase
MLLENKVAIITGAASQRGIGRATAACFAQHDARVVVLDLDLQAAQASAQSCGEGHLGLATDVTDPLSVRRAIDQVLEHFGRIDVLVNNAGITQPVKTLEIGIEDYNRILDVNLRGTLLMSQAVIPTMQQQKGGSIICLSSVSAQRGGGIFGGPHYSAAKAGVLGLTKAMAREFGPDQIRINALTPGLIQTDITGGLLQDERRHAILDGIPLGRLGSASDVANAALFLASDLSGYLTGITLDVNGGMLIH
>CP031650.1|AYP25111.1|10231_11134_+|LysR-family-transcriptional-regulator
MEKQSDHLPSIKSLRVFEQVAHFGNVARAAEELSITPSAASHQLAKLERELGCILFNRSAKGVVLTLSGEHYLREIGPILLSLTQATARISNEKARSNLRIHCAPSFGLLWLLPRIHKFRDSYPEFQLTLSCSYENLSFSRDNIDIAIRHGFPDWNSFEIKTIRHERMSVLASPEYLKKHPVNQAADLIHHALILSESPLIQWPQWFASQQLPQPDKEWLFRFDRSYMSLEAAMLGHGLIFESELLAEDYLRSGKLVRVLSEQESLPVSAHHLVFPRGFAQFPRVAHFLSWIQQELKVLT
>CP031650.1|AYP25112.1|11333_12785_+|sugar-porter-family-MFS-transporter
MSTNTPDSGEAGDHAPADTVRQRIFLVVLVATMGALAFGYDTGIISGALPYMTSPPDQGGLGLNSFTEGLVASSLVFGAAIGSFLSGFFSDRFGRRITLRSLAVIFVLGSLGTALAPSVNVMVAMRFLLGIAVGGGSSTVPVFIAEIAGPRLRAPLVSRNELMIVTGQLIAYVASTLLSYLLHDEHLWRYMLAIAMVPGLLLFIGTFFVPASPHWLVAEGRLKEAKKILKYLRETPREVRHEMAQMKKQARAAERGPDAKTLIREKWVIRLMVIGVGLGFVAQFTGVNGFMYYTPIILKQTGLGTSASIAATIGNGVVSVVAAIVGIWAVSRFPRRTMLITGLCLVVASQIMLGSVMTFIAPSLMQSYLALACILLFLFCMQMCISPVYWLMMSELFPMQLRGVLTGGAVSLQWIFNAIVAFGFPPIMEYAGSTTFFIFAAINVGSLIFVMAMVPETRGKSLEEIESHMKEKFGEKPKEAEAS
>CP031650.1|AYP25113.1|13130_13691_+|phospholipid:lipid-A-palmitoyltransferase
MKISTTTAVFAALLTAAPLHAENTPISSWWNGFTDDVAQTWNAPQHTDLYLPFISWHARFMYDKEKTDNYNENPWGGGLGISRYSDSGNWSALYAMAFKDSHNEWQPIVGYGWEKGWYPGSNQDFRLGAGLTAGITAREDFGNYIPLPIILPLFSAGYKALNVQFTYIPGTYNNGNVLFAWFRYAF
>CP031650.1|AYP25114.1|13709_15209_+|alpha/beta-fold-hydrolase
MTRRWKTVTRRLWRLAIVSGVLLLLLLIIRIYEAERGPELHRWHTWVPHELTVEQLDNATYADYLKAENHQFDEMKQQVSNRLDAEDKTPLNRYYAGSMIYPGHFAQDWNRSYILQPTGRPRGAVVLLHGLTDSPYSLRHVAEAYRQQGYVAVAIRLPGHGTVPAGLTDVDWQDWMAATRLAVREATRLAGTQTPLHLVGFSNGGALAIKYALDSLGDHTLRRPQQLILLSPMIGVTRFARFAGVAGLPSVFPAFSKTAWLNIVPEFNPFKYNSFPVHAARQTYLLTQALQKEILQYARNQQLSGFPPVLTFQSVMDSTVSTPSVIRSLYNYLPVNGSELVLFDINQAVSVSPLFRHSSYTAVNQLLPAARRNYSSTVITNASATSLEMVTKSVPAGEMQERIQPLAIAYPAGLYSLSHVAIPFPAEDGLYGSAPAQKNEFGISFGTLSLRGESAVLIVGLDSIMRATSNPFYPYMINRIDHHISCSDKRQLAACLSSF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031650_1	1.2\|1545\|56\|CP031650\|PILER-CR	1545-1600	56	NZ_CP031650	Pantoea agglomerans strain TH81 plasmid unnamed1, complete sequence	1539-1594	0	1.0
CP031650_2	2.1\|1859\|35\|CP031650\|CRISPRCasFinder	1859-1893	35	NZ_CP034149	Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence	538562-538596	0	1.0
CP031650_2	2.1\|1859\|35\|CP031650\|CRISPRCasFinder	1859-1893	35	NZ_CP031650	Pantoea agglomerans strain TH81 plasmid unnamed1, complete sequence	1859-1893	0	1.0
CP031650_1	1.2\|1545\|56\|CP031650\|PILER-CR	1545-1600	56	NZ_CP034149	Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence	538856-538911	1	0.982
CP031650_2	2.1\|1859\|35\|CP031650\|CRISPRCasFinder	1859-1893	35	NZ_CP016890	Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence	475907-475941	1	0.971
CP031650_2	2.1\|1859\|35\|CP031650\|CRISPRCasFinder	1859-1893	35	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	175379-175413	1	0.971
CP031650_2	2.1\|1859\|35\|CP031650\|CRISPRCasFinder	1859-1893	35	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	18351-18385	1	0.971
CP031650_1	1.1\|1460\|63\|CP031650\|PILER-CR	1460-1522	63	NZ_CP031650	Pantoea agglomerans strain TH81 plasmid unnamed1, complete sequence	1454-1516	3	0.952
CP031650_2	2.1\|1859\|35\|CP031650\|CRISPRCasFinder	1859-1893	35	NZ_CP046723	Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence	519762-519796	3	0.914

1. spacer 1.2|1545|56|CP031650|PILER-CR matches to NZ_CP031650 (Pantoea agglomerans strain TH81 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgccagatgcccggtctgaggcgagtcataactgccatggcgggatgctaatcttg	CRISPR spacer
tgccagatgcccggtctgaggcgagtcataactgccatggcgggatgctaatcttg	Protospacer
********************************************************

2. spacer 2.1|1859|35|CP031650|CRISPRCasFinder matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 0, identity: 1.0

tctactgactcatattacgaccccgtcggcacgcg	CRISPR spacer
tctactgactcatattacgaccccgtcggcacgcg	Protospacer
***********************************

3. spacer 2.1|1859|35|CP031650|CRISPRCasFinder matches to NZ_CP031650 (Pantoea agglomerans strain TH81 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tctactgactcatattacgaccccgtcggcacgcg	CRISPR spacer
tctactgactcatattacgaccccgtcggcacgcg	Protospacer
***********************************

4. spacer 1.2|1545|56|CP031650|PILER-CR matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 1, identity: 0.982

tgccagatgcccggtctgaggcgagtcataactgccatggcgggatgctaatcttg	CRISPR spacer
tgccagatgcccggtctgaggcgagtcataactgccatggcgagatgctaatcttg	Protospacer
******************************************.*************

5. spacer 2.1|1859|35|CP031650|CRISPRCasFinder matches to NZ_CP016890 (Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.971

tctactgactcatattacgaccccgtcggcacgcg	CRISPR spacer
tctactgactcatattacgaccccgtcggcacgcc	Protospacer
**********************************

6. spacer 2.1|1859|35|CP031650|CRISPRCasFinder matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 1, identity: 0.971

tctactgactcatattacgaccccgtcggcacgcg	CRISPR spacer
tctactgactcatattacgaccccgtcggcacgcc	Protospacer
**********************************

7. spacer 2.1|1859|35|CP031650|CRISPRCasFinder matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 1, identity: 0.971

tctactgactcatattacgaccccgtcggcacgcg	CRISPR spacer
tctactgactcatattacgaccccgtcggcacgcc	Protospacer
**********************************

8. spacer 1.1|1460|63|CP031650|PILER-CR matches to NZ_CP031650 (Pantoea agglomerans strain TH81 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.952

tgtctgctgatgggcactatccttgcctcaccattgaatctctttaacggctttccgaat	CRISPR spacer
tgtctgctgatgggcactatccttgcctcaccattgaatctctttaacggctttccgaat	Protospacer
************************************************************

9. spacer 2.1|1859|35|CP031650|CRISPRCasFinder matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 3, identity: 0.914

tctactgactcatattacgaccccgtcggcacgcg	CRISPR spacer
actactgactcatattacgaccctgtcggcacgcc	Protospacer
 **********************.**********

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031649

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP031650

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection