CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033427	Mycobacterium avium subsp. paratuberculosis strain MAPK_CN9/15 chromosome, complete genome	4 crisprs	DinG,DEDDh,cas3,csa3,WYL,cas4	1	3	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP033427_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033427_2

561767-561837

Orphan

Consensus_repeat	Method
GGTGGGACGCAGTCGGACGCAGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033427_2

>merge|CP033427|2|561767-561837|CRISPRCasFinder
GGTGGGACGCAGTCGGACGCAGTCGCAGTCCGCTTGAACGCCACTGCGTCCGGACGCGGTGGGACGCAGTC

>CP033427|2|2|561767-561837|CRISPRCasFinder
GGTGGGACGCAGTCGGACGCAGTC	GCAGTCCGCTTGAACGCCACTGC
GTCCGGACGCGGTGGGACGCAGTC

Protein	Signature genes	Signature genes Name	Protein_function
CP033427.1\|AYQ67263.1\|567743_568052_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227505
CP033427.1\|AYQ67259.1\|563005_563482_-\|DUF2742-domain-containing-protein	unknown	unknown	gnl\|CDD\|371285
CP033427.1\|AYQ67252.1\|559333_559573_-\|hypothetical-protein	unknown	unknown	unknown
CP033427.1\|AYQ67249.1\|558195_558378_-\|hypothetical-protein	unknown	unknown	unknown
CP033427.1\|AYQ67255.1\|560495_560720_-\|hypothetical-protein	unknown	unknown	unknown
CP033427.1\|AYQ67254.1\|560055_560496_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|378935
CP033427.1\|AYQ67251.1\|558906_559341_-\|hypothetical-protein	unknown	unknown	unknown
CP033427.1\|AYQ67256.1\|561062_561353_-\|hypothetical-protein	unknown	unknown	unknown
CP033427.1\|AYQ67266.1\|571168_571972_-\|acetoacetate-decarboxylase	unknown	unknown	gnl\|CDD\|377649
CP033427.1\|AYQ67250.1\|558607_558838_-\|hypothetical-protein	unknown	unknown	unknown
CP033427.1\|AYQ67248.1\|557908_558217_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214989
CP033427.1\|AYQ67258.1\|561845_562736_-\|hypothetical-protein	unknown	unknown	unknown
CP033427.1\|AYQ67253.1\|559708_559987_+\|hypothetical-protein	unknown	unknown	unknown
CP033427.1\|AYQ67262.1\|567252_567552_+\|hypothetical-protein	unknown	unknown	unknown
CP033427.1\|AYQ67257.1\|561349_561664_-\|hypothetical-protein	unknown	unknown	unknown
CP033427.1\|AYQ67261.1\|563785_564337_-\|hypothetical-protein	unknown	unknown	unknown
CP033427.1\|AYQ67264.1\|568128_568650_+\|hypothetical-protein	unknown	unknown	unknown
CP033427.1\|AYQ67260.1\|563478_563691_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|200128
CP033427.1\|AYQ67265.1\|569950_571165_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|368185
CP033427.1\|AYQ70825.1\|568657_569926_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|368185

Protein	Function_ID	Function_description	E-value
CP033427.1\|AYQ67263.1\|567743_568052_+\|hypothetical-protein	gnl\|CDD\|227505	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification].	6.45961e-05
CP033427.1\|AYQ67266.1\|571168_571972_-\|acetoacetate-decarboxylase	gnl\|CDD\|377649	pfam06314, ADC, Acetoacetate decarboxylase (ADC). This family consists of several acetoacetate decarboxylase (ADC) proteins (EC:4.1.1.4).	1.23325e-49
CP033427.1\|AYQ67254.1\|560055_560496_-\|DNA-binding-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	2.45589e-07
CP033427.1\|AYQ67260.1\|563478_563691_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|200128	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General].	5.74266e-11
CP033427.1\|AYQ70825.1\|568657_569926_-\|amidohydrolase	gnl\|CDD\|368185	pfam04909, Amidohydro_2, Amidohydrolase. These proteins are amidohydrolases that are related to pfam01979.	1.16311e-17
CP033427.1\|AYQ67265.1\|569950_571165_-\|amidohydrolase	gnl\|CDD\|368185	pfam04909, Amidohydro_2, Amidohydrolase. These proteins are amidohydrolases that are related to pfam01979.	2.60652e-22
CP033427.1\|AYQ67259.1\|563005_563482_-\|DUF2742-domain-containing-protein	gnl\|CDD\|371285	pfam10888, DUF2742, Protein of unknown function (DUF2742). Members in this family of phage proteins are the product of the gene phiRv1, however no function is known.	2.64148e-35
CP033427.1\|AYQ67248.1\|557908_558217_+\|hypothetical-protein	gnl\|CDD\|214989	smart01040, Bro-N, BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.	2.50981e-26

>CP033427.1|AYQ67257.1|561349_561664_-|hypothetical-protein
MTALHHLLEALAAAPSLPGARCRGRHHLFDEAAPNEAPEVVEQRHAQVLGLCSRCPAADRCRAWFNALPARHRPHGVVAGQLRTQQRGRPRKQHPIHPNPKGTP
>CP033427.1|AYQ67256.1|561062_561353_-|hypothetical-protein
MTTDNPTPSDDQALAALYATALGVLLAGLVNDGRLTTEIERIIAAGEKVTAGVLGFLTAAAANAYEYEHGSREAAIDAVTADLATVLLAAGEGQPS
>CP033427.1|AYQ67255.1|560495_560720_-|hypothetical-protein
MTALTALRDVLAAAIDECGSKRDLAALLRQFTAVLAQIEAARVRPPQRRIADEIAARRTARQAAAAADAKSADR
>CP033427.1|AYQ67254.1|560055_560496_-|DNA-binding-protein
MSDELRQRYKVIFDAVRVSEIEITPDLARCLVHWLGDYIRLKQQPGQPGVPEGLVAAQTALAEAYAAVTHSPRSERDRPIGAGFVFSAHDAWVGTAEAAEMLGIKAGSVGWLCRESHLEHRKVGRQYMISTASIEDYKRRKAERSA
>CP033427.1|AYQ67253.1|559708_559987_+|hypothetical-protein
MDMFDLRVSRELFRRGQSRRQSREDSPVAGAVSLHCFAPEVDAALRNPAFVVGSDDDSPVIRAGPLLGRRHRVSVLFGLILRELGIDGLLQR
>CP033427.1|AYQ67252.1|559333_559573_-|hypothetical-protein
MRIVHGKDPATWSKEERDNALLYGLGPRFAAAAAARGIPRPPGGSGYYQPTGIEPYEPVDLGGGQIEWRAKPDYRPRGD
>CP033427.1|AYQ67251.1|558906_559341_-|hypothetical-protein
MTDMAYRMSPRVEMLAVKDQNGIIWHHYQRPVGGARNLGPIIAWIGPDYRDRWLRMGLIEEIPDDAAAALSQPPPSDAVAGPNTDLVDECIAALDRFDVPADAGAPTARKALRDRGQAWGNETIAAAVRARKARAAPSGTPAGS
>CP033427.1|AYQ67250.1|558607_558838_-|hypothetical-protein
MQVLNSSEGLGDAAGVDIVVNNSGGCSLDPQTGIRLKPGEFFVFSLRQPSNGRPLPLYAVAAGPGGQLTITIVSQE
>CP033427.1|AYQ67249.1|558195_558378_-|hypothetical-protein
MDSDAIQCQRLVALATHHALDGMSEHPGQLRQDPITALLNQCRRARAGQDAGMDYMHVPF
>CP033427.1|AYQ67248.1|557908_558217_+|hypothetical-protein
MDGKRWAVAADICAALDIRNSRDAVTRLDEADVATTDIRSGGQIRKVTVVSENGATDLILDSRKPEARRFRRWLTHEVWPAIRDTGSYSTAPPLTDQNGTCM
>CP033427.1|AYQ67258.1|561845_562736_-|hypothetical-protein
MGCAAAELNAGNDVVYIHYEEPDATSTVEKLCLLGVDPAVIKARFRFVAPSRPVREEWLNALLDPSPTLVIHDGVNEAMALHGDEIKAVEGAAAFRRRLILPCLRVGAATLACDHLPMVRDGSRRDAYGSVHKGNALDGARFVLENSAPFGRRLRGVSYVFVTKDRPGHLRANGRATKSPGKTFMGTLVVDDSQAFGPDFTMRFFAPRDDDVPESDPNAELADAVFRVVAAAPDHAVGSMRLLFAELRNVDIQFRDDDVRDVVDDLVVSGRLVEISGKRGAKGFRAVVEDADGDST
>CP033427.1|AYQ67259.1|563005_563482_-|DUF2742-domain-containing-protein
MTQNRNGPPIEVEGRAPHHRDRPSTSKVGSHATAYNRTTELTAPSAETPGTTNSRQVSWWETHQFIEALITQANTGPLPPAGTPAWSALADGDPRKLLALAVAGEHHVLRVETAQTAMAEASQAVSAAADWTRIGRRNRDHEDIHRQRPWLRRKAPRC
>CP033427.1|AYQ67260.1|563478_563691_-|helix-turn-helix-domain-containing-protein
MPSSSTISPARQARRWASLQQAAEYLGVTDRTVRQMIADGRLAGYRSGNRLVRVDLNELDAAMKPFGGAS
>CP033427.1|AYQ67261.1|563785_564337_-|hypothetical-protein
MADDNLDYLLPEQREWWLTNAAMPPTLVLRCGIGGCGICVGIVKSDKTDPGVAIALMHHKSGKTTVPHYEPIDDERLAALGLPPATELYDASGITLAEHIQRRQREVDSLTIRSVDKTRRVSRRHADPSVAMPLEWIGYIVCPDHGTVALPDPATTVAAMRGQLIPTTHAKRRTFRIFRGTSV
>CP033427.1|AYQ67262.1|567252_567552_+|hypothetical-protein
MRFTSAAAAAGMALTALIGASAAQADTGVNGYVQCVGGDAKPPPPGQQAEFWFPSVHVIDVDLSSGVPPEQVVQRLVDMGVKPEDAATRVRCFMANAPH
>CP033427.1|AYQ67263.1|567743_568052_+|hypothetical-protein
MAMHRIRRVVITLVAAAAAMFPVAAFASAPPASADPICGTPGTPPCAGPSPLTPEQQCALIAWRSMLPCNWLGMQVPAGTPGSWDNPPAPPPPAEPPPPPPP
>CP033427.1|AYQ67264.1|568128_568650_+|hypothetical-protein
MSTLAAALALTACLTAPGATADPTPQQSPFPTGKSGTTIHVTEYSTATADVTLNSATWVSSGCPGGGGCNVIELTIAGKSDKPFTYSQASITAASTPWRQDPYRDTQGGSSLADYQQLNKTPPLRVGSVTNGQTAHGFIAYDGAIRQGDVYIEFNDPDAPAAPTPLAGWKVHT
>CP033427.1|AYQ70825.1|568657_569926_-|amidohydrolase
MDPYIIISADTHAELPTERYREYVDPEYREDFETYLAEKTAAAQAGGFIDEEFAQEWFSEHGEGIAGGWDVALRDKELDGDGVVGEVIFPDADAVTGVAGAPFGAGLGQSGDLDPGRAMAGARAHNRWLAELCSHSPERRAGVAVVPILADVDAAVAEITRAAESGLRGGILIPARWVGYPPYHDRRYDKVWAACQDLQMPVHTHSGPAPQEEYGGHLGIYVTEVRWWGARPLWFALWSGVFERFPGLRWGVTECGAFWANDLLWLMDTRYLREHSAKKMSHLMEGDLTMPPSAYFDRNCFIGATTTERRELARRYEIGVSNILWGNDFPHPEGTWPHTRDWLRRSFWDIPVEETRQMLGLAAAELYNFDLGALAPLAARIGPVPADLGQDDAVSIPKWEAARRTGRHWLTDAEPMPDLVQS
>CP033427.1|AYQ67265.1|569950_571165_-|amidohydrolase
MDRYTVISADCHAGADLLDYRDYLDPQYRDEFDGWAKTYVNPFGDLSEPDAERNWNSARRNCELDTEGIAGEVIYPNTVPPFFPHASLAAPPPETARELELRWAGLRAHNRWLADFCSLSPERRAGVGQILLGDLDEAVAEVGQIAKLGLRGGVLLPGIAPGTGIPPLYAEHWEPLWAACAEAGVVVNHHGGNAGPSPTDGWGSSFAVWVYETHWWAHRALWHLIFSGALDRHPDLTVVFTEQGAGWIPATLASLDVAAARYARANSAIARFAGPTAGSLSLKPSQYWARQCYVGASFMRPVECAERHGIGVEKVMWGSDYPHYEGTAPYTREALRHTFSDVPPDEVAAMVGGNAARVYGFDLDALAPLVDRIGPSVAEVAEPLAAVPADASSTVFEPDPIRTW
>CP033427.1|AYQ67266.1|571168_571972_-|acetoacetate-decarboxylase
MSSNVIRYGPRPPEAQVDHEIDATKAPIATEAVTVIYLTEPDIVAAVLPKPLQPADEPLVRIQLQRVRIEGMAPFGSAVFSVTARHGDRYGDYPLFMPQSTEQSVTGGRETFGEPKKLAQITVERDGDRVTAGVDRLGYRLIRLSGQVSGRAELPPDQMNTEFYFKFLRAPDGSGITDPHLVYGEYHRHYELLENIDGTLELGESPLDPVADIVIRQVTSITWCRRRTVQVGRIAARVPQEWLLPYVHQRYDDVALLAAPRPEPARA

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Crispr_ID: CP033427_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033427_3

590966-591046

Orphan

Consensus_repeat	Method
GGCGCAGCGGGTCACCGCCATTAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033427_3

>merge|CP033427|3|590966-591046|CRISPRCasFinder
GGCGCAGCGGGTCACCGCCATTAGCGGCGCGGCGATCGCAAGCGCGGCGCAGCCGGGCGCAGCGGGTCACCGCCATTAGCG

>CP033427|3|3|590966-591046|CRISPRCasFinder
GGCGCAGCGGGTCACCGCCATTAGCG	GCGCGGCGATCGCAAGCGCGGCGCAGCCG
GGCGCAGCGGGTCACCGCCATTAGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP033427.1\|AYQ70827.1\|597436_598054_+\|DUF3000-domain-containing-protein	unknown	unknown	gnl\|CDD\|378665
CP033427.1\|AYQ67295.1\|598055_599342_+\|ribonuclease-D	unknown	unknown	gnl\|CDD\|223426
CP033427.1\|AYQ67289.1\|591649_592498_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380141
CP033427.1\|AYQ67292.1\|594014_595370_-\|protoporphyrinogen-oxidase	unknown	unknown	gnl\|CDD\|237009
CP033427.1\|AYQ67283.1\|586170_587292_-\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|281902
CP033427.1\|AYQ67291.1\|593313_594009_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225792
CP033427.1\|AYQ67284.1\|587290_588055_+\|pyrimidine-reductase-family-protein	unknown	unknown	gnl\|CDD\|184482
CP033427.1\|AYQ67296.1\|599386_601312_-\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|235470
CP033427.1\|AYQ67280.1\|584355_585108_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616
CP033427.1\|AYQ67282.1\|585662_586193_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP033427.1\|AYQ67278.1\|583346_583691_-\|DUF732-domain-containing-protein	unknown	unknown	gnl\|CDD\|368380
CP033427.1\|AYQ67286.1\|589657_590944_+\|DUF2029-domain-containing-protein	unknown	unknown	gnl\|CDD\|378217
CP033427.1\|AYQ67288.1\|591111_591516_+\|peptide-methionine-(R)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|376583
CP033427.1\|AYQ67285.1\|588069_589629_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|312032
CP033427.1\|AYQ67279.1\|583890_584259_-\|DUF732-domain-containing-protein	unknown	unknown	gnl\|CDD\|368380
CP033427.1\|AYQ67281.1\|585147_585675_+\|hypothetical-protein	unknown	unknown	unknown
CP033427.1\|AYQ67293.1\|595366_596440_-\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
CP033427.1\|AYQ67277.1\|582388_583318_-\|cytochrome-c-oxidase-assembly-protein	unknown	unknown	gnl\|CDD\|378238
CP033427.1\|AYQ67294.1\|596487_597309_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|235991
CP033427.1\|AYQ67290.1\|592564_593317_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312

Protein	Function_ID	Function_description	E-value
CP033427.1\|AYQ70827.1\|597436_598054_+\|DUF3000-domain-containing-protein	gnl\|CDD\|378665	pfam11452, DUF3000, Protein of unknown function (DUF3000). This is a bacterial family of uncharacterized proteins.	4.78428e-92
CP033427.1\|AYQ67295.1\|598055_599342_+\|ribonuclease-D	gnl\|CDD\|223426	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis].	1.50099e-104
CP033427.1\|AYQ67292.1\|594014_595370_-\|protoporphyrinogen-oxidase	gnl\|CDD\|237009	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.	0
CP033427.1\|AYQ67283.1\|586170_587292_-\|cell-division-protein-ZapE	gnl\|CDD\|281902	pfam03969, AFG1_ATPase, AFG1-like ATPase. This P-loop motif-containing family of proteins includes AFG1, LACE1 and ZapE. ATPase family gene 1 (AFG1) is a 377 amino acid yeast protein with an ATPase motif typical of the family. LACE1, the mammalian homolog of AFG1, is a mitochondrial integral membrane protein that is essential for maintenance of fused mitochondrial reticulum and lamellar cristae morphology. It has also been demonstrated that LACE1 mediates degradation of nuclear-encoded complex IV subunits COX4 (cytochrome c oxidase 4), COX5A and COX6A, and is required for normal activity of complexes III and IV of the respiratory chain. ZapE is a cell division protein found in Gram-negative bacteria. The bacterial cell division process relies on the assembly, positioning, and constriction of FtsZ ring (the so-called Z-ring), a ring-like network that marks the future site of the septum of bacterial cell division. ZapE is a Z-ring associated protein required for cell division under low-oxygen conditions. It is an ATPase that appears at the constricting Z-ring late in cell division. It reduces the stability of FtsZ polymers in the presence of ATP in vitro.	2.03101e-109
CP033427.1\|AYQ67291.1\|593313_594009_-\|hypothetical-protein	gnl\|CDD\|225792	COG3253, ywfI, Predicted heme peroxidase involved in anaerobic stress response [General function prediction only].	1.15157e-106
CP033427.1\|AYQ67284.1\|587290_588055_+\|pyrimidine-reductase-family-protein	gnl\|CDD\|184482	PRK14059, PRK14059, pyrimidine reductase family protein.	7.9616e-122
CP033427.1\|AYQ67296.1\|599386_601312_-\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|235470	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
CP033427.1\|AYQ67289.1\|591649_592498_+\|hypothetical-protein	gnl\|CDD\|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	5.95391e-07
CP033427.1\|AYQ67280.1\|584355_585108_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	9.9331e-17
CP033427.1\|AYQ67282.1\|585662_586193_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.60086e-19
CP033427.1\|AYQ67278.1\|583346_583691_-\|DUF732-domain-containing-protein	gnl\|CDD\|368380	pfam05305, DUF732, Protein of unknown function (DUF732). This family consists of several uncharacterized Mycobacterium tuberculosis and leprae proteins of unknown function.	1.40033e-26
CP033427.1\|AYQ67286.1\|589657_590944_+\|DUF2029-domain-containing-protein	gnl\|CDD\|378217	pfam09594, GT87, Glycosyltransferase family 87. The enzymes in this family are glycosyltransferases. PimE is involved in phosphatidylinositol mannoside (PIM) synthesis, a major class of glycolipids in all mycobacteria. PimE is a polyprenol-phosphate-mannose-dependent mannosyltransferase that transfers the fifth mannose of PIM. The family also includes alpha(1-->3) arabinofuranosyltransferase, invloved in the synthesis of of mycobacterial arabinogalactan.	1.90819e-35
CP033427.1\|AYQ67288.1\|591111_591516_+\|peptide-methionine-(R)-S-oxide-reductase	gnl\|CDD\|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	4.50437e-76
CP033427.1\|AYQ67285.1\|588069_589629_+\|alpha/beta-hydrolase	gnl\|CDD\|312032	pfam08386, Abhydrolase_4, TAP-like protein. This is a family of putative bacterial peptidases and hydrolases that bear similarity to a tripeptidyl aminopeptidase isolated from Streptomyces lividans. A member of this family is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterized from Propionibacterium freudenreichii.	1.11251e-18
CP033427.1\|AYQ67279.1\|583890_584259_-\|DUF732-domain-containing-protein	gnl\|CDD\|368380	pfam05305, DUF732, Protein of unknown function (DUF732). This family consists of several uncharacterized Mycobacterium tuberculosis and leprae proteins of unknown function.	1.87569e-30
CP033427.1\|AYQ67293.1\|595366_596440_-\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
CP033427.1\|AYQ67277.1\|582388_583318_-\|cytochrome-c-oxidase-assembly-protein	gnl\|CDD\|378238	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG). Members of this family are the CtaG protein required for assembly of active cytochrome c oxidase of the caa3 type, as found in Bacillus subtilis.	1.88345e-49
CP033427.1\|AYQ67294.1\|596487_597309_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|235991	PRK07327, PRK07327, enoyl-CoA hydratase/isomerase family protein.	8.26517e-171
CP033427.1\|AYQ67290.1\|592564_593317_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	4.91508e-21

>CP033427.1|AYQ67286.1|589657_590944_+|DUF2029-domain-containing-protein
MYGALVTAAESTGLRDWIQAAFRPRTSAPSVATVLRSALWPIAIFSVLHRSIVVTTNGNITDDFKPVYRAVLNFRRGWDIYNEHFDYVDPHYLYPPGGTLLMAPFGYLPEYPSRYLFILINTVAILIAWYLLLRLFGYTLSSVAAPALLLAMFCTETVTNTLVFTNINGCVLLAEMLFLRWLLDGRVGRQWWAGVAIGLTLTLKPVLGPLLLLPLLNRQWRALVPAFAIPILINAAAWPLVSDPMDFVTRTLPYIGGVRDYFNSSIEGNGVYFGLPTWLIVFMRILFTLIAIGALWLLYRYYRTRDPRFWFTNSAGVLLLWSWLVLPLAQGYYSMMLFPFLMTVVLPNSLIRNWPAWLGIYGFMTLDRWLLFNWMRYGRALEYLKITYGWSLLLIVVFSVLCYRYLDAKAEDRLDRGIDPAWLTAGRE
>CP033427.1|AYQ67285.1|588069_589629_+|alpha/beta-hydrolase
MSRPHPCATILVAVTALLAGCVPGLAADPRFATNSGARPQGAATSKPAPGGPPPLAAPKNDLAWHDCTSRVFADAAVPPAPGIQLDCANYDADLDPVNGGGGALSIGVVRARSNQTPRDAGPLVFTTGSDLPSSAQLPVWLSRAGADVLAAHPIVAVDRRGIGMSSPIDCRDKFDRQQMRDQSQFQAGDDPVANLSEVANTATTNCTDAIAPGASAYDDAHAASDIERLRSTWDVPALALIGIGNGAQVALAYAGSRPDKVARLILDSPVALGVNAEAAAEQQVKGQQAALDAFAAQCIAVNCALGPDPKGAVSALLADARAGKGPGGVSVAQVANAITVALGFPSGGRVNATTDLANALASARSGDTNALNNLINHANAMQDSDGQFVNVCSDAVNRPTPDRVRELVVAWGKLYPQFGTVAALNMVKCVHWPTGSPPPSPKSLKVDVLLLGVQNDPIVGTDGVAATAAGIINANAASKRVMWQGIGHGASIYSGCAVPPLIGYLGSGKLPNTDTYCPA
>CP033427.1|AYQ67284.1|587290_588055_+|pyrimidine-reductase-family-protein
MALPETPLSLLGSVREVDDGELPGLYDYPDGHAGTWVRANFIASVDGGATADGSSGAMGGPGDRFVFNLLRELADVIVVGAGTVRIEGYSGAQLGVAQRQQRQARGQSEVPPLGIVTKSGHLNRDMAVFTRTEVPPLVLTCAAAADQTRRLLSGLCEVLDCSAGDPERVDEATMLALLGKRGMRRILTEGGPTLLNSLLERQLLDELCLTIAPYLVGGHARRIATGPGQLLTRMRCAHVLTDDAGYLYTRYVRC
>CP033427.1|AYQ67283.1|586170_587292_-|cell-division-protein-ZapE
MRLIAARGYSACMHGSGSASASAGVAHLVDRHPTVSPQRLIAQLRPPPTFADVSFATYQPDPAEPTQATAVAACREFCRQAVQRRAGRRKLLGRREILPGVGLYLDGGFGVGKTHLLASAYYELPGDGPVRSPDGPAPKAFATFGELTQLAGVFGFAECVDLLADYTAVCIDEFELDDPGNTTLVARLLSSLVERGVSVAATSNTLPEQLGEGRFAAQDFLREINTLASIFTTVRIEGPDYRHRDLAPAPPPLSDAQVAARAAVVPGATLDDFDALCAHLATMHPSRYLTLIEGVTAVFLTGVHRIDDQNVALRLVSLTDRLYDAGVPVLASGEKLDTIFSAEMLSGGYRKKYLRAMSRLLALTAGANEAYGS
>CP033427.1|AYQ67282.1|585662_586193_+|GNAT-family-N-acetyltransferase
MESLTPAPATHAVRIITTESVDVQQLADLAARTFPLACPTSAAREDIAAFIDANLSAECFARYLADPHRAILAAELDGRIVGYAMLIHDLAGDAAELSKIYVAPEQHGAGTAAALMRLAVDTAGRWGVSRVWLGVNQKNQRAQRFYAKHGFTVSGTRTFQLGAGREDDYLMSRTLR
>CP033427.1|AYQ67281.1|585147_585675_+|hypothetical-protein
MRRWLRVVSAFLIGFPVAAAGVGAVPLPRAWAGDAPIGHIGDTLRVDNGTFIADVTVSSVAPCDPPPGFGYTREGTYKGFPGSTVDRADVTIRAIRVPNPYILATVFSFNGVTPNADAYKPRASDAPDALDNVLVNAPNGAIVRGGVYWDAYRDPVSNVVLLDKKTGYHLAQWNL
>CP033427.1|AYQ67280.1|584355_585108_+|ATP-dependent-Clp-protease-ATP-binding-subunit
MSEPIRIVHPVRLDELIDAIKTTHPDVLDQLADAVLAAEHLGEVADHLIGHFVDQARRSGASWTDIGKSMGVSKQAAQKRFVPREATILDPGQGFQRFTPRARGAVVAAQNAAHQAGNREITPDHLLIGVLSDPAALATVLLRLQHVDTDALRDAATAAIAALRADGDPPALIPFSGPARKVLELTVREALRLGHNYVGTEHQLLALLELEDGDGPLHRGGVDKERVEVDLIRALESLGNGKNVGAGEDG
>CP033427.1|AYQ67279.1|583890_584259_-|DUF732-domain-containing-protein
MLCKNHRFMKLFLIVAGFAAVIGLAVPARADSTDDAFVASLDKAGIKYGDADKAAGAGKWVCTTLQGGKQMSDVVSTLQSKNSNLSDDHANTFAAIAVNAYCPDQASSITPATPTDTPPSTS
>CP033427.1|AYQ67278.1|583346_583691_-|DUF732-domain-containing-protein
MRLFLGLCALAATIGLAAPAHADIDNDQDFLKDLRDAGITYQDAGNAITIGKSVCELLDDGQSDAKIVTDLRNQNPAFQGASAAKFTYLSAAHYCPKYITGEDRGPKPEGAVGN
>CP033427.1|AYQ67277.1|582388_583318_-|cytochrome-c-oxidase-assembly-protein
MRVDPGPLTWDTAVQTWHLDPVSAVVVVALAAGYAWCYRRAGASARVAPAAYFAAGLLAWVAATCSAVGTYAYLLFWVRALQVLLLLYVVPFFLAQATPVTMLRDALGPSGRDRLDRLLASPIARVLAHPATTSLGMLATPWLLYLTPWYTAALHNEWVGAPTRILLVALGFGYFYARLQEDPVPRRYPQSISLLITVVEALGDGLLGLVIWQGSLIGASYYAGLHRVWGPDPRLDQTIGAGVLWILGDLVGWPFVLLLMRAMSRDERAHAVAVDAELDEAESHDAGGAAASGLWWENDPQLRERFGRG
>CP033427.1|AYQ67288.1|591111_591516_+|peptide-methionine-(R)-S-oxide-reductase
MTSPKVQLTDDEWRQRLTPEEFHVLRQAGTERPFTGEYTDTKTEGVYQCRACGAELFRSTEKFESHCGWPSFYDPANSDAVILRPDHSLGTTRTEVLCANCHSHLGHVFTGEGYPTPTDQRYCINSICLRLAPS
>CP033427.1|AYQ67289.1|591649_592498_+|hypothetical-protein
MDDAFVGSDAVRRGTLSRHRLRAQFRAIYPDIYLPAHAARSLRTRSVAAWLWSGRRGVLAGLAAAALHGSSWIDDDEPIELIWRNPHPPAGVITRNQRLEPDEITRVAGLPVTTPARTAFDLARQRPRGEAVARLDALMRATPFSTAEVLMLAERRPRARGLRKLRAALPLVDPGAASPKETWLRLLLIDAGIPVPATQIPVQQNWRLIAVLDMGWEDYLVAAEYDGDHHRTNRRQYARDQARLRTLQKLGWIVVRVIAEDKPDDVVRRTRDALTRRGYRDT
>CP033427.1|AYQ67290.1|592564_593317_-|class-I-SAM-dependent-methyltransferase
MTASFDPADPARFEEMYRDQRTSHGLPAATPWDIGGPQPVVRQLVALGAVKGEVLDPGTGPGHHAIYYASQGFSATGIDGSAAAIERARANARKAGVSVNFELADATKLDGFDGRFDTVVDCAFYHVFATEPELRSSYARALHRATKPGARLYMFEFGEHDVNGFKMMRSLSENDFRDVLPAAGWEISYLGPTTYQVNLSAETIQMMAARNPDMADEAAKLLERFRAMEPWLQGGRVHAPFWEVHATRVD
>CP033427.1|AYQ67291.1|593313_594009_-|hypothetical-protein
MAKLDYDALNSAIRYLMFSVFAVRPGALGDQRDEVVDDASRFFKQQEERGVVVRGLYDVAGMRADADFMIWTHAETVEALQATYADFRRTTALGRVCSPVWSSVALHRPAEFNKSHIPAFLAGEEPGAYICVYPFVRSYEWYLLPDEERRRMLAEHGMAAREYKDVRANTVPAFALGDYEWILAFEAPELHRIVDLMRELRATDARRHTRAETPFFTGPRVPVEQLVNSLP
>CP033427.1|AYQ67292.1|594014_595370_-|protoporphyrinogen-oxidase
MTARSYCVVGGGISGLTAAYRLRVAAGDDAVITLLDPAPQLGGILRTEPVGGVPMDLGAEAFVLRRPELPALLSEVNLTGRQRVSTGARPLIYSRGRLHPLPTGTVVGIPSSAASMARLVDEATLARIDAEPRRPLHWRPGSDPAVADLVGDRFGEQVVSRSVDPLLSGVYAGSAATIGLRAAAPTVAAALDRGAASLTDAVRRALPPATGAPVFGALDGGYRVLVDELVARARPRRVRAAAARLEPAGPGWAVVDDAGARRHADAVILAVPAREVARLLAGIAPRSAAAAGRVVAASSVVLALAVPGDTAFPDCSGVLVATGERLRAKAITLSSKKWGTRADVQLLRLSFGRFGDQVAARTPDEELRGWALADLAAVFGLDVRPVDVRVQRWLDAMPQYGPGHAELVGELRAGLPPTLAVAGGYLDGIGVPACVGAAGRAVEALQAEVAP
>CP033427.1|AYQ67293.1|595366_596440_-|uroporphyrinogen-decarboxylase
MNSSARTRRDLPESPYLAAVNGRKPHRVPVWFMRQAGRSLPEYRALRAQHDMLSACFDAELVCEITLQPVRRHDVDAAILFSDIVVPLLGAGIDLDIVAGVGPVIASPVRTAADVAAMKPLERQRVQPIADAVRLLVSALVEVPLIGFAGAPFTLASYLIEGGPSRHHARTKAMMLADPDSWHALMEKLTDITVGFLRVQLDAGVDAVQVFDSWAGALSLANYRSYVQPHSARVFAALADYGVPMTHFGVGTAELLGAMSAALKPAPATVVGVDWRTALADAATRVMPGTALQGNLDPVVLLAGWPVVETAARAVVDDGRRAVDAGAAGHVFNLGHGVLPETDPGVLTELVSLVHSL
>CP033427.1|AYQ67294.1|596487_597309_+|enoyl-CoA-hydratase/isomerase-family-protein
MPVSHPPVDYHDFPSLRCELGDDGVLTVVLDSPGLNSVGPQMHRDLADIWPVIDRDPAVRAVLVRGEGKAFSSGGSFDLIDETIGDYQGRVRIMREARDLVHNMINCDTPVVSAIRGPAVGAGLVVALLADISVAGRTAKLIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLLGEEAERIGLVSLCVDDDDVLSTAAGIAGKLAQGAQHAIQWTKRSLNHWYRMMGPTFETSVGLEFLSFSGPDVQEGLAAHREKRAARFTGGSAT
>CP033427.1|AYQ70827.1|597436_598054_+|DUF3000-domain-containing-protein
MQNGRDEQERRQVTSSEPAPFREAVAAMNAVVMRPEIELGPIRPPQRLAPHSYALGAEVKHPDREIIPERSDGDAFGRLILLYDPEGADAWDGTIRMVAYIQADLDPSEAVDPLLPEVAWSWLVEALESRMEHVVALGGTVTATTSVRYGDISGPPRAHQLELRASWTATSPAVGAHVQAFCEVLEHAAGLPPAGVTDLSSRSRA
>CP033427.1|AYQ67295.1|598055_599342_+|ribonuclease-D
MGEPSAEGPGSGVPAPIPLPHPSEGVPPISASVPDIEDAARRLDRGRGPFAVDAERASGFRYSNRAYLIQIRRAGAGTVLIDPVSHGADPVRALRPVAEVLGSDEWILHSADQDLPCLAEVGMRPPALYDTELAGRLAGFERVNLATMVERLLGFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQGKTDWAAQEFDYLREAGSKEPGPAARRDRWRRTSGIHRVRDQRGLAAVRELWLTRDRIAQRRDIAPRRILPDSAIIEAALANPTTIEELVALPVFGGRNQRRSAATWLAALDAARQSENPPVDSEPPNGPPPPARWSRRKPEAAARLEAARAALAEVSERVHVPTENLVAPDLVRRLCWDWEPTPDPFAAVDAFLCAGHARPWQRELVDPVLARALQQPLPAVADDDG
>CP033427.1|AYQ67296.1|599386_601312_-|1-deoxy-D-xylulose-5-phosphate-synthase
MLEQIRGPADLQHLSTHQLRELAAEIREFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPIIFDTGHQAYVHKMLTGRAHEFESLRKKGGLSGYPSRSESEHDWVESSHASAALSYADGLAKAFELSGHRNRHVVAVVGDGALTGGMCWEALNNIAASGRPVIIVVNDNGRSYAPTIGGVADHLATLRLQPAYEQALQRGRDALRALPLVGKFAYRVMHSVKAGIKDSLSPQLLFTDLGLKYVGPVDGHDERAVEAALRHARGFGRPVIVHVVTRKGMGYAPAEDDEADQMHSCGVIDPVTGQATKVAGPGWTATFSDALIGYARKRRDIVAITAAMPGPTGLTPFGQQFPDRLFDVGIAEQHAMTSAAGLAMGGMHPVVAIYSTFLNRAFDQIMMDVALHRLPVTMVLDRAGITGSDGASHNGMWDLSILGVVPGMRVAAPRDAARLREELGEALDVDDGPTALRFPKGDVGEDIPAIERRGSGLSGVDVLALPASGCNHDVLLIGVGAFAPMALAVARRLADQGIGVTVVDPRWVLPVSDSILELAARHKLVVTCEDNGVNGGVGSAVSAALRRAELDVPCRDVGLPQRFYEHASRGELLADLALTDQDIARRITGWVAALGSGVAEAEIREHLD

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Crispr_ID: CP033427_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033427_4

1270704-1270794

Orphan

Consensus_repeat	Method
AGCCCGGCGACGATGCCCGCCGCAGCGCGGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033427_4

>merge|CP033427|4|1270704-1270794|CRISPRCasFinder
AGCCCGGCGACGATGCCCGCCGCAGCGCGGCGGGAGGAGGAGGCGGGCCATCCCACCCAGCCCGGCGACGATGCCCGCCGCAGCGCGGCGG

>CP033427|4|4|1270704-1270794|CRISPRCasFinder
AGCCCGGCGACGATGCCCGCCGCAGCGCGGCGG	GAGGAGGAGGCGGGCCATCCCACCC
AGCCCGGCGACGATGCCCGCCGCAGCGCGGCGG

Protein	Signature genes	Signature genes Name	Protein_function
CP033427.1\|AYQ67882.1\|1275332_1276913_+\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
CP033427.1\|AYQ67881.1\|1274512_1275328_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|236183
CP033427.1\|AYQ67877.1\|1269275_1270691_-\|NAD(P)H-quinone-dehydrogenase	unknown	unknown	gnl\|CDD\|236112
CP033427.1\|AYQ67870.1\|1262702_1262915_+\|hypothetical-protein	unknown	unknown	unknown
CP033427.1\|AYQ67869.1\|1262263_1262617_+\|DUF732-domain-containing-protein	unknown	unknown	gnl\|CDD\|368380
CP033427.1\|AYQ67868.1\|1261154_1262072_-\|esterase	unknown	unknown	gnl\|CDD\|226040
CP033427.1\|AYQ67879.1\|1271334_1272513_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349936
CP033427.1\|AYQ67885.1\|1278558_1279872_+\|primosomal-protein	unknown	unknown	gnl\|CDD\|215601
CP033427.1\|AYQ67873.1\|1265604_1265892_-\|hypothetical-protein	unknown	unknown	unknown
CP033427.1\|AYQ67875.1\|1266595_1267468_-\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211332
CP033427.1\|AYQ67884.1\|1277702_1278533_+\|acid-phosphatase	unknown	unknown	gnl\|CDD\|309350
CP033427.1\|AYQ67883.1\|1276764_1277538_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
CP033427.1\|AYQ67886.1\|1279904_1280888_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|184242
CP033427.1\|AYQ67880.1\|1272509_1273712_-\|M20-family-peptidase	unknown	unknown	gnl\|CDD\|349921
CP033427.1\|AYQ67874.1\|1266097_1266556_-\|diguanylate-cyclase/phosphodiesterase	unknown	unknown	unknown
CP033427.1\|AYQ67871.1\|1262990_1264127_-\|PPE-family-protein	unknown	unknown	gnl\|CDD\|366325
CP033427.1\|AYQ67872.1\|1264236_1265373_-\|PPE-family-protein	unknown	unknown	gnl\|CDD\|366325
CP033427.1\|AYQ67876.1\|1267464_1269219_-\|glycerol-3-phosphate-dehydrogenase/oxidase	unknown	unknown	gnl\|CDD\|223651
CP033427.1\|AYQ67878.1\|1270844_1271312_+\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|372719
CP033427.1\|AYQ70885.1\|1273757_1274414_-\|cutinase-family-protein	unknown	unknown	gnl\|CDD\|366455

Protein	Function_ID	Function_description	E-value
CP033427.1\|AYQ67882.1\|1275332_1276913_+\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
CP033427.1\|AYQ67881.1\|1274512_1275328_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|236183	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional.	3.82935e-132
CP033427.1\|AYQ67872.1\|1264236_1265373_-\|PPE-family-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	2.96273e-51
CP033427.1\|AYQ67884.1\|1277702_1278533_+\|acid-phosphatase	gnl\|CDD\|309350	pfam04185, Phosphoesterase, Phosphoesterase family. This family includes both bacterial phospholipase C enzymes EC:3.1.4.3, but also eukaryotic acid phosphatases EC:3.1.3.2.	5.9047e-42
CP033427.1\|AYQ67869.1\|1262263_1262617_+\|DUF732-domain-containing-protein	gnl\|CDD\|368380	pfam05305, DUF732, Protein of unknown function (DUF732). This family consists of several uncharacterized Mycobacterium tuberculosis and leprae proteins of unknown function.	7.11334e-25
CP033427.1\|AYQ67868.1\|1261154_1262072_-\|esterase	gnl\|CDD\|226040	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism].	8.75232e-96
CP033427.1\|AYQ67879.1\|1271334_1272513_-\|amidohydrolase	gnl\|CDD\|349936	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of uncharacterized bacterial proteins predicted as putative amidohydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
CP033427.1\|AYQ67885.1\|1278558_1279872_+\|primosomal-protein	gnl\|CDD\|215601	PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional.	0.000437843
CP033427.1\|AYQ67875.1\|1266595_1267468_-\|pseudouridine-synthase	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	4.53932e-117
CP033427.1\|AYQ67883.1\|1276764_1277538_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	2.5881e-108
CP033427.1\|AYQ67886.1\|1279904_1280888_+\|VWA-domain-containing-protein	gnl\|CDD\|184242	PRK13685, PRK13685, hypothetical protein; Provisional.	1.49442e-179
CP033427.1\|AYQ70885.1\|1273757_1274414_-\|cutinase-family-protein	gnl\|CDD\|366455	pfam01083, Cutinase, Cutinase.	6.47823e-37
CP033427.1\|AYQ67871.1\|1262990_1264127_-\|PPE-family-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	1.69844e-50
CP033427.1\|AYQ67877.1\|1269275_1270691_-\|NAD(P)H-quinone-dehydrogenase	gnl\|CDD\|236112	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.	0
CP033427.1\|AYQ67876.1\|1267464_1269219_-\|glycerol-3-phosphate-dehydrogenase/oxidase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	0
CP033427.1\|AYQ67878.1\|1270844_1271312_+\|gamma-glutamylcyclotransferase	gnl\|CDD\|372719	pfam13772, AIG2_2, AIG2-like family. This family is found in bacteria and metazoa.	2.35863e-33
CP033427.1\|AYQ67880.1\|1272509_1273712_-\|M20-family-peptidase	gnl\|CDD\|349921	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily. Peptidase M20 family, aminoacylase 1-like protein 2 (ACY1L2; amidohydrolase)-like subfamily. This group contains many uncharacterized proteins predicted as amidohydrolases, including gene products of abgA and abgB that catalyze the cleavage of p-aminobenzoyl-glutamate, a folate catabolite in Escherichia coli, to p-aminobenzoate and glutamate. p-Aminobenzoyl-glutamate utilization is catalyzed by the abg region gene product, AbgT. This subfamily includes Staphylococcus aureus antibiotic resistance factor HmrA that has been shown to participate in methicillin resistance mechanisms in vivo in the presence of beta-lactams. Aminoacylase 1 (ACY1) proteins are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	2.70707e-153

>CP033427.1|AYQ67877.1|1269275_1270691_-|NAD(P)H-quinone-dehydrogenase
MVTRIVILGGGPAGYEAALVAASSHPDSTHVTVIDSEGIGGAAVLDDCVPSKTFIASTWLRTELRRAPRLGFEIDIDDAKISLPQIHARVKQLATEQSADITEQLLGVGVHVVAGRGELIDPTPGLARHRIKATAPDGSSSEYEADVVLIATGASPRILPSAQPDGERILTWRQLYNLDALPDHLIVVGSGVTGAEFVHAYTELGVPVTVVASRDRVLPYEDADAALVLEEAFSERGVQLVKNARAQSVTRTPDGVLVTLTDGRTVAGSHALMTIGSVPNTAGLGLERVGIELGRGGYLTVDRVSRTSVPGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRPEIAAVGVPQTMIDDGSVSARTIMLPLRTNARAKMSGLRQGFVKVFCRKSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLMAHDDLD
>CP033427.1|AYQ67876.1|1267464_1269219_-|glycerol-3-phosphate-dehydrogenase/oxidase
MSDPIHALGEPGSPASALGPRQRAAAWDRLGAEQFDVVVIGGGVVGSGCALDAATRGLKVALVEARDFASGTSSRSSKMFHGGLRYLEQLEFGLVREALYERELSLTTLAPHLVKPMPFLFPLTNRLWERPYIAAGIFLYDRLGGAKSVPAQKHLTRAGALRLCPGLKRSALIGGIRYYDTIVDDARHTLTVARTAAHYGVVVRNSTQVVALLREGDRVTGVRVRDSEDGSVTEVRGHVVVNATGVWTDEIQALSKQRGRFQVRASKGVHVVVPRDRIVSDVAIILRTEKSVMFVIPWGSHWIIGTTDTDWDLDLAHPAATKADIDYILSTVNTVLAIPLTHADIDGVYAGLRPLLAGESEETSKLSREHAVAVPAPGLVAIAGGKYTTYRVMAADAIDAAAQFIPARVAPSITEKVSLLGADGYCALINQAEHVAQLRGLHPYRVRHLLDRYGSLIGDVLALAADRPDLLNPITEAPGYLRVEALYAVTAEGALHLEDILARRMRISIEYSHRGVDCAREVADVVAPVLGWTAGDVEREVANYTARVQAEILSQAQPDDVSADELRASAPEARAEILEPVPLN
>CP033427.1|AYQ67875.1|1266595_1267468_-|pseudouridine-synthase
MRPAPLPVRDGLGPARVRLRGGPVLAELTARFGAAARAKVLAAEVVTADGAVVDEATVLPAGASVYLYRELPDEVVVPFDLPVLHRDDDIVVVDKPHFLATMPRGRHVAQTALVRLRRELGLPELSPAHRLDRLTAGVLLFTARREVRGAYQTLFSRGLVDKTYLARAAVDPALVFPRVLAGRIVKHRGRMQAVCEPGPPNALTEVELLSPDGLYRLRPRTGRTHQLRLQMASLGIPIIGDPLYPNIIDVPADDFSTPLQLLAQRIEFDDPRTGARRVFVNRRTLDDPGP
>CP033427.1|AYQ67874.1|1266097_1266556_-|diguanylate-cyclase/phosphodiesterase
MRRQLRIPERANDAETALLRYLLYGLLPAWFIPALLDWNQHRRSRIEITSGTRESLIHLLMMAEVGVPITLVLLCEINPLVLSTILASIAAHEATALWDVTAAERSGRRVTTWEQHVHSFLESLPIMAASALGCLHWREVRELVRGARSRDA
>CP033427.1|AYQ67873.1|1265604_1265892_-|hypothetical-protein
MRHGTVAAAAALLLAAGVIAAAPPARAGCQYGGPVLSKCDGPVQPDGTWQRCVAVTRLIPNGASSYLVPDRHCEQLGPDQHPADLAFADPPGHID
>CP033427.1|AYQ67872.1|1264236_1265373_-|PPE-family-protein
MDLFAPPEVTSTLIHTGPGAGSLIEAAAAWQRVAVELENSVSSYASTLSSLIESWDGPSAMAMLQSVQPYLLWLRETAQQSAQLANSAEAAATAFGTVRSTVVHPSVVSANRTRLAQLLATNRFGTNTAAIAETENEYQTMWANNSAALSRYQAASSQATSPLTQFNSPLAVTDPGGTANQQAAVMKASVDSSGSSVGSVLNDLNMPGGFDPNAGWFNYFSTWGNQFISSGFPINLLGVWAQLATAQGVASVGGDIGSGLSEGLGATTASLANAIKGIGAGAVAPSGAMGVGVSLGKLTAPPAVVGLLPGTQTGVQLASAASPLPAAESGFPLMPMMVPPPTTSAGTGWRKRKQQKYEDVAYGREVKGKVMPRNPSAG
>CP033427.1|AYQ67871.1|1262990_1264127_-|PPE-family-protein
MDFGILPPEVTSALIHAGPGAWSWIEAAGVWQQLSMELEQSASSYTAELAALSTTWQGPSALAMTRALEPYVDWLRITAQQCQEIATSVQTATAAFELTHWTVVHPSLVAANRARLAMLLATNFFGINYPAIAETEAEYHAMWVNNSAAMYRYAATSATAVRLPRFTEPPQVANPSGVSTQAAMVPATNAADSGTQTGVAGTLQAASTAFFDPNTGWFKYWSTWGNQFLAASGFPINLIGVLAQLQTASGFQSLGADVAGGLAEGTAALSAAEVRLVSAVGAAGSSLAPRAALGVGISLGNLTMPPATVGMLGSQAPVQLASAASPLATGAGQPPMLPMTPMRPGGNGTRRRNGRDYDDIEYGAELPGTVMQRPPSAG
>CP033427.1|AYQ67870.1|1262702_1262915_+|hypothetical-protein
MIPRLLAGMACVAIALGPPVGAAAPAGADPGPFAHLNCACDQPDPPGGATPRDAMNQGIRQGLSAPPAAE
>CP033427.1|AYQ67869.1|1262263_1262617_+|DUF732-domain-containing-protein
MTSTQIRKRARPRSLVVAGLLPLAGLLGVITTPAHATSADDAFLAALKAKGINYESPDAAVNSGHTVCHELDMGQTPEQVANNVLSSSTLDSYHAGYFVGVSIKAYCPKYAAAAAGS
>CP033427.1|AYQ67868.1|1261154_1262072_-|esterase
MAYARWLWLAVLAVCVVGCGVRHVSAASARDISGTFRSGGMDRTYMLHVPAGDPVGLVLSLHGGGGTGIAQRGLTGFDAVADAHNLLVVYPDGYEKSWADGRGASPADRHHVDDVAFLVGLVTKLQNDYRVAPGHVFVTGMSNGGFMSNRLACDRADVFAAVAPVAGTLGVGVACNPSRPVSVWAAHGTADPLVPFKGGAVRGRGGLSHAVSAEAMVDKWRKADGCQGDPSMELLPDARDGTVVHRFDSTSCAASTEVVFYRIDKGGHTWPGGKQYLPAAVIGPTTHTLDGSEAIAEFFLAHARD
>CP033427.1|AYQ67878.1|1270844_1271312_+|gamma-glutamylcyclotransferase
MPLYAAYGSNMDPEQMLKRAPHSPMAGTGWLHGWRLTFGGEDIGWEGALATVVEDPGSKVFVVLYDMTPADEKNLDRWEGSEFGVHKKIRCRVDRISSDTTTDPVLAWLYVLDAWEGGLPSARYLGVMADAAEIAGAPADYVHDLRTRPARNIGP
>CP033427.1|AYQ67879.1|1271334_1272513_-|amidohydrolase
MSLADAATSWLAAHNQDLIEWRRHIHRYPELGRQEYATTQFVAERLAEAGLNPKVLPGGTGLTCDLGPEHEPRIALRADMDALPMAERTGAPYASTMPNVAHACGHDAHTAILLGTALVLASVPELPVGVRLIFQAAEELMPGGAIDAIAAGAITGVSRIFALHCDPRLEVGQIAVRHGPITSAADQIEITLYSPGGHTSRPHLTADLVYGLGTLITGLPGVLSRRIEPRNGTVLVWGAVNAGVAANAIPQTGVLAGTVRTASRQTWVGLEEVIRETVSGLLAPLGIEHTLQYRRGVPPVVNEDVSTRILTHAIEALGPDALADTRQSGGGEDFSWYLEEIPGAMARLGVWPGVGPQLDLHQPTFNLDERALAIGVRVMANIVEQSALFQVF
>CP033427.1|AYQ67880.1|1272509_1273712_-|M20-family-peptidase
MPPVGSDSPLDSVEDVVRRRGADLVELSHAIHAEPELAFAEHRSCAKAQALVAERGFEITAAAGGLDTAFRADFGSGQLTIGVCAEYDALPEIGHACGHNIIAASAVGTALALVEVADDLGLRVALVGTPAEEAGGGKALLLKAGVFDDISAAVMLHPGPADIAAARSLALSEAIVRYRGKESHAAVAPHLGVNALDAVTVAQVAVGLLRQQLAPGQLVHGIVTDGGQAVNVIPGHASLQYAMRAVESDSLRELEGRMYACFAAGAMAAGCEYEIDNPAPAYDELKPDAWLANIFREEMCRLGRQPVAPEYEAALPMGSTDMGNVTQALPGIHPVVGVESGGAMVHQRAFADAAAGPSADRAVIEGAIMLARTVVALAQTPAERDRVLAAHERRRGGAHP
>CP033427.1|AYQ70885.1|1273757_1274414_-|cutinase-family-protein
MVGPAIGTVVAVALSVVAITCGPAPRAAADGCPDVQLIFARGTAEPPGLGAVGDALFAALQPALGNRNVDAYAVNYPASYNFLTTADGANDARDHIAEMVDRCPSTRLVLGGFSQGAAAVSMLAGVPPVGQRIGNFGSAPPLDPGLASKIAAVAVFGNPGNRFNTPLSTTGAFAGRAIDLCSDGDPVCVVGGRDRDAHHVYEDPPYPAQAAGFIAGRV
>CP033427.1|AYQ67881.1|1274512_1275328_+|purine-nucleoside-phosphorylase
MAETPSNPGELARQAAAVIGERTGVAEHDVAIVLGSGWSPAVAALGTPTAVLPQAELPGFRPPTAVGHTGELVSMRIGEHRVLVLVGRIHAYEGHDLCHVVHPVRAACAAGVRAVVLTNAAGGLRPDLAVGEPVLISDHLNLTGRSPLVGPQFVDLTDAYSPRLRELARQADPTLAEGVYAGLPGPHYETPAEIRMLRTLGADLVGMSTVHETIAARAAGAEVLGVSLVTNLAAGISGEPLSHTEVLAAGAASATRMGALLALILCQLPRF
>CP033427.1|AYQ67882.1|1275332_1276913_+|phospho-sugar-mutase
MTPEEWIAHDPDPRTAAELAACGAAELAARFARPLRFGTAGLRGPVRAGPDAMNVAVVSRASWALAQVLKRRGPAGARVIVGRDARHGSAVFATVAAEVLAAQGFSVLLLPGPAPTPVVAFAVRHTGAAAGVQITASHNPPTDNGYKVYDGGGIQIVSPTDHQIEAAMADAPPADEIRRTPVPPAHTDLVQRYIERAAGVRRGTGSVRVALTALHGVGGTVAVDALHRAGFGRIHTVASQFAPDPDFPTVVFPNPEEPGATDALLTLAADVDADVAIALDPDADRCAVGIPDASGWRMLSGDETGWLLGDYLLSQPQRADRPVVASTVVSSRMLSAIAARHGAVHVETLTGFKWLARADAEVPGGTLVYAYEEAIGHCVDPAAVRDKDGISAAVLVCDLVAGLIARGGSVSGRLDELARRHGVHDVAAVSRRVGTDGAAELMRRLRTSPPETLAGFGVALTDITDALIFTGGDDDTSVRLVVRPSGTEPKVKCYLEIRCAPSDDLASSRRRARALRELLVATVRSW
>CP033427.1|AYQ67883.1|1276764_1277538_-|uracil-phosphoribosyltransferase
MDVCVIDHPLAAARLTVLRDERTDTAGFRAALRDLTLMLVYEASRDAPRKSVRIRTPVAAAAGTRLVNPPLLVPVLRAGLGMVDPAQAALPEAEVGFVGVARDEQTHRPVPYLAALPDKLAGRPVMVLDPMLATGGSMAHTLGLLQRRGATDITVLCVVAAPEGLAAVGETAPDARVFTAAVDKGLNKAAYIVPGLGDAGDRQFGPNLFTSSAPSRPEAPAGRGRAAAKTPGRRSARSESPSSTSPSARSRKAAPPA
>CP033427.1|AYQ67884.1|1277702_1278533_+|acid-phosphatase
MAAVALAASPLTPRTSLAAAAIPQPSHIVIVVEENRSESGIIGNKSAPFITALAASGANMTQSFAETHPSEPNYLALFAGNTFGVTKDLCPVNAGAAPNLGSELLAAGYTFVGYAEGLPSPGSPVCSAGKYARKHVPWANFTNVPAASSLPFSAFPMGNYASLPTVSFVIPNNDNNMHDGSIAQADSWLNRQLSGYANWALANNSLLIVTFDEDDNSNVGASRNQIPTVFYGAHVRPGNYAEQINHYNVLATLEQMYGLPKTGYAAGAAPITDIWG
>CP033427.1|AYQ67885.1|1278558_1279872_+|primosomal-protein
MAADLVPIRLSLSAGDRYTVWAPRWRDSGDEWEAFLGKDEDLYVFSSVADLVAFVRSDEDNDLTDHPAWTRLRTAHAHKFEPAKDKQFDLVAVEELVSEKPTEESVTALAGVLAIVSSIGSVCELAAVSKFFNGNPALGTVSGGIEHFTGKAGAKRWHAIAEIIARGWDDVLGAIDDIATTPEVDEALSAKAEDELAEERDDEETDEADEAAEAPADATEPDEEALEADEADGEPDDDADETETRAAGDTVVLGGDKDFWLQVGIDPIRIITGSGTFYTLRCYLDDQPIFLGRNGRISVFTSERALARYLADEHDHDLADLSTYDDIRTAATDGSLEVEITDDNIYVLSGLADDLADGPDAVDRDQLELAVEVLRDIGDYSEDSTVDKALEPGRPLGKLVAAVLEPGSVAKPSPPYAAAVREWEKLEQFVDGRLRRG
>CP033427.1|AYQ67886.1|1279904_1280888_+|VWA-domain-containing-protein
MSLPGIGPLPLYGFQRPGMLLFGLVPLALLALYLVVQARRRRRLHRYTDAPVAQSPWRHLPIAVSLLSLVLLTIALATPTHDMRIPRNRAVIMLVIDMSQSMRATDVEPNRLKAAEQAASQFASQLTPGINLGLVGFAGTPYLLVPPTPQHQATIDALKKLDFADSTATGEAIFTALHAISATAVAGGDTPPPARIVLLSDGGENKPSNPSDPHDGVYTAARLAKDEGVPISTITFGTKGGEIEMDGQKVAVPVSTDQMKMVAKLSGGQSYTATNLGELQKSYNAIENEIGYRTVPGPGSAGWLRLGVLTALIATALALLINRRLPT

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Crispr_ID: CP033427_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033427_5

3487950-3488030

Orphan

Consensus_repeat	Method
CGCCGCGAAGCGGGGTAGGGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033427_5

>merge|CP033427|5|3487950-3488030|CRISPRCasFinder
CGCCGCGAAGCGGGGTAGGGCGGACGCGACACAAATGGACCTGGCCGCGTCGGCCCTGCGCCGCGAAGCGGGGTAGGGCGG

>CP033427|5|5|3487950-3488030|CRISPRCasFinder
CGCCGCGAAGCGGGGTAGGGCGG	ACGCGACACAAATGGACCTGGCCGCGTCGGCCCTG
CGCCGCGAAGCGGGGTAGGGCGG

Protein	Signature genes	Signature genes Name	Protein_function
CP033427.1\|AYQ69772.1\|3492896_3494174_+\|riboflavin-biosynthesis-protein-RibBA	unknown	unknown	gnl\|CDD\|181774
CP033427.1\|AYQ69759.1\|3475967_3477230_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|235513
CP033427.1\|AYQ69776.1\|3495642_3497109_-\|PPE-family-protein	unknown	unknown	gnl\|CDD\|366325
CP033427.1\|AYQ71046.1\|3482060_3484028_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|237844
CP033427.1\|AYQ69765.1\|3484646_3485471_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225136
CP033427.1\|AYQ69769.1\|3489796_3491353_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
CP033427.1\|AYQ69770.1\|3491349_3492057_-\|LppX_LprAFG-lipoprotein	unknown	unknown	gnl\|CDD\|369238
CP033427.1\|AYQ69774.1\|3494702_3495167_+\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|371225
CP033427.1\|AYQ69758.1\|3475619_3475946_+\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|188073
CP033427.1\|AYQ69763.1\|3481184_3481976_+\|lysoplasmalogenase	unknown	unknown	gnl\|CDD\|226237
CP033427.1\|AYQ69773.1\|3494223_3494706_+\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
CP033427.1\|AYQ69764.1\|3484155_3484641_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP033427.1\|AYQ69775.1\|3495200_3495539_-\|hemophore-related-protein	unknown	unknown	gnl\|CDD\|275322
CP033427.1\|AYQ69761.1\|3478687_3480178_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224983
CP033427.1\|AYQ71047.1\|3485628_3486576_+\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
CP033427.1\|AYQ69767.1\|3488070_3488778_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|235515
CP033427.1\|AYQ69760.1\|3477326_3478538_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
CP033427.1\|AYQ69762.1\|3480223_3481186_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561
CP033427.1\|AYQ69768.1\|3488774_3489800_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
CP033427.1\|AYQ69771.1\|3492175_3492775_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455

Protein	Function_ID	Function_description	E-value
CP033427.1\|AYQ69772.1\|3492896_3494174_+\|riboflavin-biosynthesis-protein-RibBA	gnl\|CDD\|181774	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
CP033427.1\|AYQ69759.1\|3475967_3477230_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|235513	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated.	0
CP033427.1\|AYQ69776.1\|3495642_3497109_-\|PPE-family-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	4.74241e-54
CP033427.1\|AYQ71046.1\|3482060_3484028_+\|primosomal-protein-N'	gnl\|CDD\|237844	PRK14873, PRK14873, primosomal protein N'.	0
CP033427.1\|AYQ69765.1\|3484646_3485471_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	2.65228e-23
CP033427.1\|AYQ69769.1\|3489796_3491353_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.16841e-34
CP033427.1\|AYQ69770.1\|3491349_3492057_-\|LppX_LprAFG-lipoprotein	gnl\|CDD\|369238	pfam07161, LppX_LprAFG, LppX_LprAFG lipoprotein. This entry consists of several lipoproteins mainly from Mycobacterium species, collectively known as the LppX_ LprAFG family. Proteins in this entry include LprG, LppX, LprF and lprA.	7.28135e-89
CP033427.1\|AYQ69774.1\|3494702_3495167_+\|PH-domain-containing-protein	gnl\|CDD\|371225	pfam10756, bPH_6, Bacterial PH domain. This domain has a bacterial type PH domain structure. This domain was previously known as DUF2581. This family is conserved in the Actinomycetales. Although several members are annotated as RbiX homologs, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed.	1.40191e-17
CP033427.1\|AYQ69758.1\|3475619_3475946_+\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|188073	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit. This small component of highly purified E. coli RNA polymerase is not required for transcription, but acts in assembly and is present in stochiometric amounts. The trusted cutoff excludes archaeal homologs but captures some organellar sequences. [Transcription, DNA-dependent RNA polymerase].	1.34715e-19
CP033427.1\|AYQ69763.1\|3481184_3481976_+\|lysoplasmalogenase	gnl\|CDD\|226237	COG3714, COG3714, Predicted membrane protein [Function unknown].	8.9362e-37
CP033427.1\|AYQ69773.1\|3494223_3494706_+\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	6.43474e-64
CP033427.1\|AYQ69764.1\|3484155_3484641_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.26182e-20
CP033427.1\|AYQ69775.1\|3495200_3495539_-\|hemophore-related-protein	gnl\|CDD\|275322	TIGR04529, hypothetical_protein, hemophore-related protein, Rv0203/Rv1174c family. Members of this family occur as paralogs in most Mycobacterium strains, including 2 in M. tuberculosis, 6 in M. avium, and 9 in M. smegmatis. Members have a cleaved N-terminal signal peptide and exactly two Cys residues in the mature protein, both at invariant positions. The best characterized member, Rv0203, is a hemophore, that is, a secreted polypeptide that binds heme and delivers it to a transport system for import. Hemophores are protein analogs of siderophores, natural products that chelate non-heme iron and deliver it to receptors for transport. The unrelated HasA family of hemophores has been described in Gram-negative bacteria such as Yersinia pestis and Pseudomonas aeruginosa. [Transport and binding proteins, Other].	1.78997e-09
CP033427.1\|AYQ69761.1\|3478687_3480178_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	1.26556e-115
CP033427.1\|AYQ71047.1\|3485628_3486576_+\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	1.33235e-157
CP033427.1\|AYQ69767.1\|3488070_3488778_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|235515	PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated.	7.42844e-134
CP033427.1\|AYQ69760.1\|3477326_3478538_+\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
CP033427.1\|AYQ69762.1\|3480223_3481186_-\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.80059e-86
CP033427.1\|AYQ69768.1\|3488774_3489800_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	1.6881e-103
CP033427.1\|AYQ69771.1\|3492175_3492775_+\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	3.62239e-107

>CP033427.1|AYQ71047.1|3485628_3486576_+|methionyl-tRNA-formyltransferase
MRLVFAGTPEPALPALRRLLDSPRHEMIAVLTRPDAASGRRGKPEPSPVAREALDRGIPVLRPARPNSPEFVAELAQLAPDCCAVVAYGALLRDELLAVPPHGWINLHFSLLPAWRGAAPVQAAIAAGDIITGASTFRIEPALDSGPIYGVVTEAIRPTDTAGELLARLAVSGAELLSATLDGIADSTLTPRPQPAEGVSIAPKITVEQARVRWDLPAPVVERRIRAVTPNPGAWTVISDLRIKLGPVRLGAASDLPAPPEPLPPGAIHVDRKSVWVGTGSDPVRLGQIQPPGKKFMNAVDWARGARLDPAARAT
>CP033427.1|AYQ69765.1|3484646_3485471_-|class-I-SAM-dependent-methyltransferase
MTLDTTTADASVAARHRTVWALGDYALMAEEVMAPLGPTLVEAAGIGPGVRVLDVAAGSGNITLPAAAGASVVSTDLTPELLQRSRDRAAGMGLTIDYREANAQALPFGDGEFDAVVSAIGVQFAPDHQRAADELVRVCRPGGRIGLISWTPEGFFGRMLATIRPYRPSLSHPVPPAALWGRPGYVRALLGERIGEITTARGMLPVNRFGSAEDVHAYFKQHYGPTIEAYANIGHNRVLAAELDAQLVELAAQHLSDGTMGWEYLLVTAEKRSG
>CP033427.1|AYQ69764.1|3484155_3484641_+|MarR-family-transcriptional-regulator
MAADHTTVDESLDAITDALLTASRLLMAISARSVGQVDETITIPQFRTLVILSNRGPVNLATLAGLLGVQPSATGRMVDRLVAAGLIDRLPHPTSRRELLAALTTRGRDVVHQVTAHRRAEIAAIVAKMPPAERHGLVRALTAFTAAGGEPDVHLDAEIDL
>CP033427.1|AYQ71046.1|3482060_3484028_+|primosomal-protein-N'
MLSVPHLDREFDYLVSAEQSDDAQPGVRVRVRFHGRLVDGFLLERRHDTDHQGKLGWLDRVVSPEPVLTAEIRRLVDAVAARYAGTRPDVLRLAVPARHARVEREARAAAGIPMPAPVDPSGWDGYGRGAQFLAALAESRAARAVWQALPGEPWTDRFAEAAAQTVRTGRSVLAIVPDQRDLDALSHAVTSRIDATGVVALSAGLGPAARYRRWLAALRGSARVVIGTRSAVFAPLSDLGLVMVWADADDSLAEPRAPYPHAREVAMLRAHQARCAALIGGYARTAEAQALVRSGWAHDIVAARPVVRARTPRVIALDDTGYADERDPAARTARIPSVALRAARSALQDGAPVLVQVPRRGYVPSLACARCRTIARCRHCTGPLSLAESPGEGGGGLVCRWCGRVDPTRRCARCGSDAVRAVVVGARRTAEELGRAFAGTTVITSSGDAVVPEVADGPALVVATPGAEPRARGDYGAALLLDTWALLGRQDLRAAEDALWRWMTAAALVRPRGDGGVVMVVAESSLPTVQSLIRWDPVGHAESELTARAEVGLPPSVHMAAVDGTPAAVNALLDEAGLTGGQTLHADLLGPVDLPPGARRPAGTPPGAPVTRMLVRVPRRDGLALAAALRRGVGVLSARQTHEPARVQIDPLHIG
>CP033427.1|AYQ69763.1|3481184_3481976_+|lysoplasmalogenase
MEVPYAPRLVAGAWVVAGWVALAYGIYLTVLALRSPPGVELTGHWVLQPAFKASMALLLTLAAAGHGQVRERRWLMPALLLSAVGDWVLALPWWTLSFLVGLAAFLFAPMCFIGVLLPLVPLPSGASGPGRPSTPRIAAAVLMCLASIGLLVWFWPRLGPDKLTLPVTLYIVVLTAMVCAALLAKLPTIWTAVGAVCFAASDSMIAIGRFILGNEALAVPIWWAYAAAQILITAGFFFGREAAGDAAGEATGDATGDAAEPVE
>CP033427.1|AYQ69762.1|3480223_3481186_-|alpha/beta-hydrolase
MPRLDNPADEKPGIDPILQKVLDAVPFRLSTEDGIDAARQRFRDLPRRPLHPELRVEDRTIPGPQGAIAVRIYWPPSHSESCPAPVVLYFHGGGFVIGDLDTHDGTARQHAVGAGAIVVSVDYRLAPEHPYPAAVEDAWAATLWAAENAAGLHGDPGRIAVAGDSAGGTLAAVTAQRARDRGGPPVRFQLLWYPSTMWDASLPSFAENATAPILDVKAVAEFSRWYAGDVDLSDPPADMAPGRATDLSNLPPAYIGVAGYDPLRDDGIRYGEPLAAAGVAAQVHNAETLVHGYLGYAGVVPAATAAMERGLAALRTALQG
>CP033427.1|AYQ69761.1|3478687_3480178_-|NAD(P)/FAD-dependent-oxidoreductase
MSSPAVPDHHTLIIGAGFSGIGAAIKLDKAGLPDYRVIEAGDGVGGTWHWNTYPGIAVDIPSFSYQFSFEQSRHWSRTYAPGRELKAYAEHCADKYGIRSRIRFNTKVLAAEFDDEPRLWRVHTDPGGTVTARFLISACGVLTVPNLPDIDGVDSFGGITMHTARWDHGQDLSGKRVAVIGTGASAVQVIPEIAPIVKSLTVFQRTPIWCFPKLDVPLPAPARWAMRIPGGKSVQRLLSQAYVEVTFPISAHYFTVLPLAKRMATLGKSYLRQQVRDPEVREKLTPKYAVGCKRPGFHNGYLATFNRDNVRLVTEPIDKITPDAVATTDGEHHRIDVLILATGFKVMDPDNVPTFAVTGPGGRSLSRFWDEHRLQAYEGVSVPGFPNLFTVFGPYGYVGSSYFALIEAQTHHIVRCLKRAERLGAARVEVSEEANARYFAEMMRRRHRQIFWQDSCKLANSYYFDKNGDVPLRPGTTPEVYWRSRRFNLDDYRFSA
>CP033427.1|AYQ69760.1|3477326_3478538_+|methionine-adenosyltransferase
MSEKGRLFTSESVTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNTVRERILDIGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADPLDAQGAGDQGLMFGYAIKDTPEMMPLPIALAHRLSRRLTEVRKSGVLPYLRPDGKTQVTIEYEDDVPVRLDTVVVSTQHAADIDLENTLTPDIREKVLNTVLDDLAHDTLDTSSTRLLVNPTGKFVVGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNIVAAGLAERVEVQVAYAIGKAAPVGLFVETFGTATVDPVKIEKIVPEVFDLRPGAIIRDLDLLRPIYAQTAAYGHFGRTDVELPWEQLNKVDELKRAV
>CP033427.1|AYQ69759.1|3475967_3477230_+|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MYDRNRASTRAARIVVGVSGGIAAYKACTVVRQLSEAGHSVRVIPTESALRFVGAATFEALSGQPVHTGVFDDVPEVPHVQLGKQADLVVVAPATADLLARAVHGRADDLLTATLLTARCPVLFAPAMHTEMWLHPATVDNVATLRRRGAVVLEPAAGRLTGTDSGSGRLPEAEEITTLAQLLLERHDALPYDLAGCKMVVTAGGTREPVDPVRFIGNRSSGKQGYAVARVAAQRGAEVTLIAGHTAGLIDPAGVEVVHVSSAEQLGNAVSKHAAEADVLVMAAAVADFRPARVAAAKIKKGVEAPTIELVRNDDVLAGAVRARAHGELPNLRAIVGFAAETGDANGDVLFHARAKLRNKGCDLLVVNAVGEGRAFEVDSNDGWLLAADGTESALQHGSKTLMASRIVDAIAAFLRGDGG
>CP033427.1|AYQ69758.1|3475619_3475946_+|DNA-directed-RNA-polymerase-subunit-omega
MTNSQSDAALAAVLDRFDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE
>CP033427.1|AYQ69767.1|3488070_3488778_+|ribulose-phosphate-3-epimerase
MALMPCNTGQPRGPLIAPSILSADFSRLADEAAAVTGADWLHVDVMDNHFVPNLTIGLPVVQSLLATTTIPMDCHLMIENPDRWAPPYAEAGAHNVTFHAEATDNPIGVARDIRAAGAKAGISVKPGTPLEPYLEILPQFDTLLIMSVEPGFGGQSFIPEVLGKVRTARKLIDAGELTILVEIDGGINADTIEQAAEAGVDCFVAGLAVYGADDPAAAVEALRRQALGASQHLRR
>CP033427.1|AYQ69768.1|3488774_3489800_+|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MTASLGDRLDAAMHLAIEQSNQVKGNTYPNPPVGAVVLDGRGEVVGVGGTEPAGGDHAEILALRRAGDLAAGGTVVVTLEPCNHHGKTPPCVDALLEAGVGTVVYAVADPNPQAAGGAGRLQEAGVTVRSGLLADEVSGGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSRWISSEASRLDLHRRRAAADAIVVGTGTVLADDPALTARLPDGTLADRQPLRVVVGMREILSEAKVLNEESRTMVIRTHDPAEVLKAVSDRTDVLLEGGPTLAGAFVRAGLVNRILVYLAPTLLGGPVTAVDDVGVPTIAKALRWQFDGVDRVGPDLLLSLVPRSG
>CP033427.1|AYQ69769.1|3489796_3491353_-|MFS-transporter
MTAQTGRRVAISAGSLAVLLGALDAYVVVTIMRDIMTDVHIPINQLQRITWIITMYLLGYIAAMPLLGRASDRFGRKLVLQVSLALFMVGSVVTALAGHWGDFHLLIGGRTIQGVASGALLPVTLALGADLWAQRNRAGVLGGIGAAQELGSVLGPLYGIFIVFLFHDWRYVFWINVPLTLIAMVMIQFSLPSHEKVEQPEKVDLVGGVLLAVALGLAVIGLYNPEPDGKQILPSYGLPLVLGAVVVGILFLLWERFARTRLIEPAGVHFRPFLAALGASLFAGAALMVTLVDVELFGQGVLGQDQTQAAGLLLWFLIALPIGAVLGGWIATRVGDRAMTFVGLLIAAYGYWLIHYWRQDVLSQKHNVLGLFSVPVLHADLLVAGVGLGLVIGPLTSAALRVVPSAQHGIASAAVVVARMTGMLIGVAALSAWGLYRFNQIVANLTAAIPPNASLLERIAAQGTMYLKAFAMMYGDIFAATVVICIAGALLGLLIGGRKEHAEEPEIVEPQAVSLGER
>CP033427.1|AYQ69770.1|3491349_3492057_-|LppX_LprAFG-lipoprotein
MQTRRRLSAVFASLTLATALIAGCSSGSKQSGAPLPDPTSLVKQSADATKNVKSVHLVLSIQGKISGLPIKTLTGDLTTTPATAAKGNATITLGGSDIDANFVVVDGTLYATLTPNKWSDFGKASDIYDVSVLLNPDNGLGNALANFSNAKAEGRETINGQSTIRISGNVSADAVNKIMPQFNATQPVPSTVWVQETGDHQLVQANLQKSSGNSVQVTLSNWGEQVQVTKPPVSS
>CP033427.1|AYQ69771.1|3492175_3492775_+|riboflavin-synthase
MFTGIVEELGEVTARDVLADAARLTIRGAVVTADAGHGDSIAVNGVCLTVAELLPDGRFSADVMGETLNRSNLGALQVGSRVNLERAAAVNSRLGGHIVQGHVDGTGRIVARTPSEHWEVVRIEVPPEVARYVVEKGSITVDGISLTVSGLGGEPRDWFEVSLIPTTRELTTLGGAPVGTQVNLEVDVIAKYVERLMSR
>CP033427.1|AYQ69772.1|3492896_3494174_+|riboflavin-biosynthesis-protein-RibBA
MTRLDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMYAVNQDKHGTAYTVTVDARNGVGTGISASDRATTMRLLADPTSIAEDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAQTDELRVFADEHDLAMITIADLIEWRRKHEKHIERIAEARIPTRHGEFRAIGYTSIYEEVEHVALVRGEIAGPNSDGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMAMVAREGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRTNAENIRYLMTKRDKMGHDLAGLDDFHESVHLPGEFGGAL
>CP033427.1|AYQ69773.1|3494223_3494706_+|6,7-dimethyl-8-ribityllumazine-synthase
MSPAAGVPEMPALDASGVRLGIVASTWHSRICDALLAGARKVAADSGVDNPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFEYVCDAVTQGITRVSLDASTPVANGVLTTDNEQQALDRAGLPESAEDKGSQAAGAALSAALTLRELRARS
>CP033427.1|AYQ69774.1|3494702_3495167_+|PH-domain-containing-protein
MTPPEPERWDVVLRPHRTPLFVYGAAVLIAAAHIALGLLLKVGSTGVVFRTSDQVAIAVLGLVIAGVVLLFARPRLRIGPAGVSVRNLLGDKLIEWPDVVGVSFPVGHRWARIDLPDDEYIPVMAIQAVDKGRAVDAMDTVRSLLARYRPDLQG
>CP033427.1|AYQ69775.1|3495200_3495539_-|hemophore-related-protein
MMKRSLAKLAVTVGGLALASTAGAGVASADPDYGPMINTTCSYDQAMRAVHAENQMAAQYLDQSPPNQQFLQQYLASSPDQRVNLLHAIEHNQGAQQALPIFQQMMTDCTRY
>CP033427.1|AYQ69776.1|3495642_3497109_-|PPE-family-protein
MTMPIWAAFPPEVHSAALSSGPGPGSLLAAEQAWQALSAEYASAAAELGDLLAAVQAGTWQGPSAEAFVAAHVPYLAWLLQNSTNSTAAAREAETVAAAYTAALSAMPTLEQLATNHAVFAQLVATNFFGVNTIPIAQNEIEYLQMWLQAATTMAIYEAVSETAMTWKPPTAPPPQIQKTGVANQDAGGGPTQLSWWVTRVQEVARAISGDLSQSPSNPSATLSDLMSDPLLATEVPHWAGESLLYFTPQVPQLTQLSFGLIAPFIPAAGAPGVAGLAGLAGLAGGAPAPVLPGVAAAPSGGGAAAVLAPGPGASAATVSPAPAPAGMPATAPAPVGPPTPPPATGVPGFSAPYAVGPPGLGAGGNLSAGTRAGQTSPDFATAAAPAAADRREQVRRRRRPRPGRIDPGYRHEYLDTDPGGGPASVTASDRGAGPIGFAGTTGATGSAPVGLTTVAGDALDDGPRMPLLPGSWSAETEDPENGQVGGG

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	CP033427.1	1325897-1325925	0	1.0

1. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to position: 1325897-1325925, mismatch: 0, identity: 1.0

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgatcgcaagcgcggcgcagccg	Protospacer
*****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	492097-492125	3	0.897
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	509638-509666	3	0.897
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1780240-1780268	4	0.862
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	1847066-1847094	4	0.862
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	1027719-1027747	4	0.862
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	23039-23067	4	0.862
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NC_014811	Mycolicibacterium gilvum Spyr1 plasmid pMSPYR101, complete sequence	179192-179220	4	0.862
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NC_008703	Mycobacterium sp. KMS plasmid pMKMS01, complete sequence	44679-44707	4	0.862
CP033427_4	4.1\|1270737\|25\|CP033427\|CRISPRCasFinder	1270737-1270761	25	CP036360	Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence	131283-131307	4	0.84
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_CP022747	Sphingobium hydrophobicum strain C1 plasmid p1, complete sequence	83563-83591	5	0.828
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_CP022749	Sphingobium hydrophobicum strain C1 plasmid p3, complete sequence	166742-166770	5	0.828
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	187322-187350	5	0.828
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	1138221-1138249	5	0.828
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	523304-523332	5	0.828
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	MH744420	Streptomyces phage Kromp, complete genome	13856-13884	5	0.828
CP033427_1	1.1\|386558\|30\|CP033427\|CRISPRCasFinder	386558-386587	30	NZ_CP015530	Rhodococcus sp. WB1 plasmid pWB1, complete sequence	79911-79940	6	0.8
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_CP016462	Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence	145172-145200	6	0.793
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_CP012708	Psychrobacter urativorans strain R310.10B plasmid 2, complete sequence	936-964	6	0.793
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_LR134468	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence	99913-99941	6	0.793
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_CP024308	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence	331027-331055	6	0.793
CP033427_1	1.1\|386558\|30\|CP033427\|CRISPRCasFinder	386558-386587	30	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	125440-125469	7	0.767
CP033427_1	1.1\|386558\|30\|CP033427\|CRISPRCasFinder	386558-386587	30	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	576541-576570	7	0.767
CP033427_1	1.1\|386558\|30\|CP033427\|CRISPRCasFinder	386558-386587	30	NC_013193	Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence	107046-107075	7	0.767
CP033427_1	1.1\|386558\|30\|CP033427\|CRISPRCasFinder	386558-386587	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	517672-517701	7	0.767
CP033427_1	1.1\|386558\|30\|CP033427\|CRISPRCasFinder	386558-386587	30	MT657333	Microbacterium phage Casend, complete genome	60372-60401	7	0.767
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	92492-92520	7	0.759
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	2090622-2090650	7	0.759
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	16376-16404	7	0.759
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	597057-597085	7	0.759
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NC_007766	Rhizobium etli CFN 42 plasmid p42f, complete sequence	542873-542901	7	0.759
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_CP020911	Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence	708548-708576	7	0.759
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	418198-418226	7	0.759
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	566904-566932	7	0.759
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	34546-34574	7	0.759
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_CP014169	Sphingomonas panacis strain DCY99 plasmid unnamed, complete sequence	11428-11456	7	0.759
CP033427_1	1.1\|386558\|30\|CP033427\|CRISPRCasFinder	386558-386587	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4993432-4993461	8	0.733
CP033427_1	1.1\|386558\|30\|CP033427\|CRISPRCasFinder	386558-386587	30	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	34530-34559	8	0.733
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	589152-589180	8	0.724
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	719122-719150	8	0.724
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_CP020951	Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence	339852-339880	8	0.724
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_CP021128	Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence	539184-539212	8	0.724
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	CP007645	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence	597600-597628	8	0.724
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NZ_CP006257	Pseudomonas syringae pv. syringae HS191 plasmid unnamed, complete sequence	7119-7147	8	0.724
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	MH632120	Mycobacterium phage Thonko, complete genome	52304-52332	8	0.724
CP033427_1	1.1\|386558\|30\|CP033427\|CRISPRCasFinder	386558-386587	30	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	132707-132736	9	0.7
CP033427_1	1.1\|386558\|30\|CP033427\|CRISPRCasFinder	386558-386587	30	NZ_CP006989	Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence	326083-326112	9	0.7
CP033427_1	1.1\|386558\|30\|CP033427\|CRISPRCasFinder	386558-386587	30	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1583679-1583708	9	0.7
CP033427_1	1.1\|386558\|30\|CP033427\|CRISPRCasFinder	386558-386587	30	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	369234-369263	9	0.7
CP033427_3	3.1\|590992\|29\|CP033427\|CRISPRCasFinder	590992-591020	29	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	251834-251862	10	0.655

1. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 3, identity: 0.897

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tagaggcgatcgcaagcgcggcgcagccg	Protospacer
  * *************************

2. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 3, identity: 0.897

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tagaggcgatcgcaagcgcggcgcagccg	Protospacer
  * *************************

3. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 4, identity: 0.862

gcgcggcgatcgcaagcgcggc-gcagccg	CRISPR spacer
gcgcggcgatcgccagcgcggcaacggcc-	Protospacer
************* ******** .*.***

4. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 4, identity: 0.862

gcgcggcgatcgcaagcgcggc-gcagccg	CRISPR spacer
gcgcggcgatcgccagcgcggcaacggcc-	Protospacer
************* ******** .*.***

5. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 4, identity: 0.862

gcgcgg-cgatcgcaagcgcggcgcagccg	CRISPR spacer
-ctcggccgatcgcaagcggggcgcagccc	Protospacer
 * *** ************ *********

6. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 4, identity: 0.862

gcgcggcgatcgcaagcgcggcg--cagccg	CRISPR spacer
gcgcggccatcgcacgcgcggcggccagc--	Protospacer
******* ****** ********  ****

7. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NC_014811 (Mycolicibacterium gilvum Spyr1 plasmid pMSPYR101, complete sequence) position: , mismatch: 4, identity: 0.862

gcgcggcgatcgcaagcgcggcg--cagccg	CRISPR spacer
gcgcggccatcgcacgcgcggcggccagc--	Protospacer
******* ****** ********  ****

8. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NC_008703 (Mycobacterium sp. KMS plasmid pMKMS01, complete sequence) position: , mismatch: 4, identity: 0.862

gcgcggcgatcgcaagcgcggcg--cagccg	CRISPR spacer
gcgcggccatcgcacgcgcggcggccagc--	Protospacer
******* ****** ********  ****

9. spacer 4.1|1270737|25|CP033427|CRISPRCasFinder matches to CP036360 (Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence) position: , mismatch: 4, identity: 0.84

gaggaggaggcgggccatcccaccc	CRISPR spacer
gaagaggaggcgggccatcccatag	Protospacer
**.*******************.

10. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_CP022747 (Sphingobium hydrophobicum strain C1 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.828

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcccggcgatcgcaatcgcggcgccgccc	Protospacer
 * ************ ******** ***

11. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_CP022749 (Sphingobium hydrophobicum strain C1 plasmid p3, complete sequence) position: , mismatch: 5, identity: 0.828

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcccggcgatcgcaatcgcggcgccgccc	Protospacer
 * ************ ******** ***

12. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 5, identity: 0.828

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgccgcgatcgcaagcgctgcgccggcc	Protospacer
**** ************** **** * *

13. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 5, identity: 0.828

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgccgcgatcgcaagcgctgcgccggcc	Protospacer
**** ************** **** * *

14. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 5, identity: 0.828

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcaatgcgatcgcaagcccggcgcaggcg	Protospacer
**.  ************ ******** **

15. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to MH744420 (Streptomyces phage Kromp, complete genome) position: , mismatch: 5, identity: 0.828

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgatcgccaccgcggcgtcggcg	Protospacer
************* * *******. * **

16. spacer 1.1|386558|30|CP033427|CRISPRCasFinder matches to NZ_CP015530 (Rhodococcus sp. WB1 plasmid pWB1, complete sequence) position: , mismatch: 6, identity: 0.8

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
ccctgcgcaccgaaccgccgccgcgggagc	Protospacer
* *.**.********** ********* *

17. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_CP016462 (Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence) position: , mismatch: 6, identity: 0.793

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tttcggcgatcgcaagcgtggcgcatcag	Protospacer
 . ***************.****** * *

18. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_CP012708 (Psychrobacter urativorans strain R310.10B plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.793

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
ggatggcgagcgcaagcgcggcacagcct	Protospacer
* ..***** ************.*****

19. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_LR134468 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence) position: , mismatch: 6, identity: 0.793

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgatctccagcgcggcgtcgagg	Protospacer
*********** * *********. *  *

20. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_CP024308 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence) position: , mismatch: 6, identity: 0.793

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgagcgcaagggcggcgatgaag	Protospacer
********* ****** ******  *  *

21. spacer 1.1|386558|30|CP033427|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
gcccgcacaccgaaccggcgacgcgaccgg	Protospacer
  ****************** ****. .*.

22. spacer 1.1|386558|30|CP033427|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 7, identity: 0.767

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
tgccgcacaccgagccggcgccgctgcccg	Protospacer
.************.********** * . .

23. spacer 1.1|386558|30|CP033427|CRISPRCasFinder matches to NC_013193 (Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence) position: , mismatch: 7, identity: 0.767

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
agcggcacagcgaaccggcgccgctgccgg	Protospacer
 ** ***** ************** * .*.

24. spacer 1.1|386558|30|CP033427|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
cgccgctcaccgaaccggcggcggtgacgg	Protospacer
****** ************* **  *..*.

25. spacer 1.1|386558|30|CP033427|CRISPRCasFinder matches to MT657333 (Microbacterium phage Casend, complete genome) position: , mismatch: 7, identity: 0.767

----cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
agggcgt----caccgaaccggtgccgcgggaga	Protospacer
    **.    ***********.******** **

26. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.759

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgatcgcccgcgcggcgtcgaga	Protospacer
*************  ********. *  .

27. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.759

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgatcgcccgcgcggcgtcgaga	Protospacer
*************  ********. *  .

28. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 7, identity: 0.759

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgagcgcaggcgcggcggcgaac	Protospacer
********* ****.********  *

29. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 7, identity: 0.759

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgatcgcccgcgcggcgtcgaga	Protospacer
*************  ********. *  .

30. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NC_007766 (Rhizobium etli CFN 42 plasmid p42f, complete sequence) position: , mismatch: 7, identity: 0.759

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcgcggcgatcgcctgcgcggcgccatag	Protospacer
 ************  ********* .. *

31. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 7, identity: 0.759

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcgcggcgatcgcctgcgcggcgccatag	Protospacer
 ************  ********* .. *

32. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 7, identity: 0.759

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcgcggcgatcgcctgcgcggcgccatag	Protospacer
 ************  ********* .. *

33. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 7, identity: 0.759

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgatcgcccgcgcggcgtcgaga	Protospacer
*************  ********. *  .

34. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.759

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggtgatggcaagcgcggcggaaaga	Protospacer
******.*** ************ *.  .

35. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_CP014169 (Sphingomonas panacis strain DCY99 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcgcggcgatcgcaagcgtcgcgctgttc	Protospacer
 *****************. **** *..

36. spacer 1.1|386558|30|CP033427|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.733

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
gctcgctcaccgaacgggcgccgcggccgg	Protospacer
  .*** ******** ********** .*.

37. spacer 1.1|386558|30|CP033427|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.733

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
ccgaacacaccgaaccggcgacgcggaagg	Protospacer
*   .*************** *****. *.

38. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 8, identity: 0.724

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcgcggcgatcgcctgcgcggcgccatat	Protospacer
 ************  ********* ..

39. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.724

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcgcggcgatcgcccgcgcggcgagcgtc	Protospacer
*************  ******** .  .

40. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_CP020951 (Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence) position: , mismatch: 8, identity: 0.724

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcgcggcgatcgcctgcgcggcgccataa	Protospacer
 ************  ********* .. .

41. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 8, identity: 0.724

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcgcggcgatcgcctgcgcggcgccatat	Protospacer
 ************  ********* ..

42. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 8, identity: 0.724

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
tcgcggcgatcgcctgcgcggcgccatat	Protospacer
 ************  ********* ..

43. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NZ_CP006257 (Pseudomonas syringae pv. syringae HS191 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.724

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
agtgagcgatcgcaagcacggcccagcca	Protospacer
.   .************.**** *****.

44. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to MH632120 (Mycobacterium phage Thonko, complete genome) position: , mismatch: 8, identity: 0.724

gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gcccggcgatcgcgagcgcggcgtgcgac	Protospacer
** **********.*********..

45. spacer 1.1|386558|30|CP033427|CRISPRCasFinder matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 9, identity: 0.7

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
cgccggacaccgaaccggcgcattgacccg	Protospacer
***** ***************  .*. . .

46. spacer 1.1|386558|30|CP033427|CRISPRCasFinder matches to NZ_CP006989 (Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence) position: , mismatch: 9, identity: 0.7

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
attattacaccgaactgccgccgcgggtgg	Protospacer
  .  .*********.* ***********.

47. spacer 1.1|386558|30|CP033427|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.7

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
ggccgcaccccgaaccggggccgctctgct	Protospacer
 ******* ********* *****

48. spacer 1.1|386558|30|CP033427|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 9, identity: 0.7

cgccgcacaccgaaccggcgccgcgggtga	CRISPR spacer
ggccgcaccccgaaccggggccgctctgct	Protospacer
 ******* ********* *****

49. spacer 3.1|590992|29|CP033427|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 10, identity: 0.655

-----gcgcggcgatcgcaagcgcggcgcagccg	CRISPR spacer
gtcgggcgcggcgctggcgatcgccgcgc-----	Protospacer
     ******** * **.* *** ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

913896 : 920468

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYQ67570.1\|913896_916062_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	5.7e-208	51.6
AYQ67571.1\|916031_916484_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	1.7e-13	37.7
AYQ67572.1\|916526_916766_-	redoxin NrdH	V5UN81	Mycobacterium_phage	2.0e-21	64.5
AYQ67573.1\|916841_917108_-	hypothetical protein	NA	NA	NA	NA
AYQ67574.1\|917295_917850_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	5.4e-06	33.6
AYQ67575.1\|917943_918558_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AYQ67576.1\|918557_919601_+	DNA polymerase IV	F1C5A5	Cronobacter_phage	1.1e-18	27.9
AYQ67577.1\|919535_920468_-	SDR family oxidoreductase	W8CYX9	Bacillus_phage	5.9e-05	35.9

DBSCAN-SWA_2

2724312 : 2789164

uncultured_Mediterranean_phage(17.65%)

holin,transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYQ70987.1\|2724312_2725506_+\|protease	serine protease	A0A1B1IRH0	uncultured_Mediterranean_phage	2.6e-05	25.0
AYQ69101.1\|2725498_2726464_-	alpha/beta hydrolase	NA	NA	NA	NA
AYQ69102.1\|2726464_2727004_-\|holin	phage holin family protein	NA	NA	NA	NA
AYQ69103.1\|2727224_2727896_+\|protease	serine protease	NA	NA	NA	NA
AYQ70988.1\|2727987_2729940_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	5.8e-87	39.4
AYQ69104.1\|2730054_2730597_+	DUF4232 domain-containing protein	NA	NA	NA	NA
AYQ69105.1\|2730681_2732307_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AYQ69106.1\|2732308_2733235_+	ABC transporter permease	NA	NA	NA	NA
AYQ69107.1\|2733227_2734103_+	ABC transporter permease	NA	NA	NA	NA
AYQ70989.1\|2734099_2735746_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.0e-13	28.0
AYQ69108.1\|2735735_2736494_+	oxidoreductase	NA	NA	NA	NA
AYQ69109.1\|2736959_2737817_-	HAD-IB family hydrolase	NA	NA	NA	NA
AYQ69110.1\|2738329_2739385_+	helicase	NA	NA	NA	NA
AYQ69111.1\|2739381_2740557_+	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA
AYQ69112.1\|2740553_2741357_+	hypothetical protein	NA	NA	NA	NA
AYQ70990.1\|2741379_2741967_+	type II secretion system F family protein	NA	NA	NA	NA
AYQ69113.1\|2741985_2742186_+	DUF4244 domain-containing protein	NA	NA	NA	NA
AYQ70992.1\|2742245_2742512_+	pilus biosynthesis protein TadE	NA	NA	NA	NA
AYQ70991.1\|2742468_2742837_+	helicase	NA	NA	NA	NA
AYQ69114.1\|2742833_2743871_-	hypothetical protein	NA	NA	NA	NA
AYQ69115.1\|2744002_2746333_-	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	5.1e-05	27.1
AYQ70993.1\|2746581_2746785_+	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	2.0e-14	56.2
AYQ69116.1\|2746973_2747564_+	hypothetical protein	NA	NA	NA	NA
AYQ69117.1\|2747768_2750567_+	type I DNA topoisomerase	A0A2K9L5F8	Tupanvirus	3.6e-98	30.4
AYQ69118.1\|2750563_2752225_-	adenylate/guanylate cyclase domain-containing protein	A0A1B1IWY2	uncultured_Mediterranean_phage	8.4e-18	32.8
AYQ69119.1\|2752322_2753528_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
AYQ69120.1\|2753755_2754943_+\|transposase	IS481-like element ISMav5 family transposase	NA	NA	NA	NA
AYQ69121.1\|2755097_2756906_-	hypothetical protein	NA	NA	NA	NA
AYQ69122.1\|2756871_2757813_+	NAD-dependent epimerase/dehydratase family protein	A0A2K9L0I7	Tupanvirus	2.7e-37	34.8
AYQ69123.1\|2757809_2758151_-	DUF2304 domain-containing protein	NA	NA	NA	NA
AYQ69124.1\|2758147_2758849_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
AYQ69125.1\|2758884_2760135_-	hypothetical protein	NA	NA	NA	NA
AYQ69126.1\|2760262_2761351_+	DUF475 domain-containing protein	A0A172Q0Y5	Acinetobacter_phage	1.1e-53	41.3
AYQ69127.1\|2761331_2761820_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	3.6e-30	44.4
AYQ69128.1\|2761941_2763327_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
AYQ69129.1\|2763323_2764397_+	hydrolase	NA	NA	NA	NA
AYQ69130.1\|2764375_2765338_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
AYQ69131.1\|2765343_2766000_+	hypoxanthine phosphoribosyltransferase	A0A1V0SEQ1	Hokovirus	2.2e-06	26.4
AYQ69132.1\|2766007_2766757_-	DUF541 domain-containing protein	NA	NA	NA	NA
AYQ69133.1\|2767070_2767370_+	PE family protein	NA	NA	NA	NA
AYQ69134.1\|2768650_2770231_-	HNH endonuclease	NA	NA	NA	NA
AYQ69135.1\|2770260_2771274_-	alcohol dehydrogenase	NA	NA	NA	NA
AYQ69136.1\|2771273_2772461_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
AYQ69137.1\|2772457_2773387_-	alpha/beta hydrolase	NA	NA	NA	NA
AYQ69138.1\|2773526_2773940_+	VOC family protein	NA	NA	NA	NA
AYQ69139.1\|2773974_2774199_+	hypothetical protein	NA	NA	NA	NA
AYQ69140.1\|2774212_2776612_+\|protease	ATP-dependent zinc metalloprotease FtsH	E5EQU5	Bathycoccus_sp._RCC1105_virus	4.3e-108	44.9
AYQ69141.1\|2776628_2777243_+	GTP cyclohydrolase I FolE	E7DN69	Pneumococcus_phage	6.6e-45	53.9
AYQ69142.1\|2777262_2778066_+	dihydropteroate synthase	S4W084	Pandoravirus	3.9e-21	33.0
AYQ69143.1\|2778058_2778460_+	dihydroneopterin aldolase	NA	NA	NA	NA
AYQ69144.1\|2778568_2779117_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
AYQ69145.1\|2779116_2779593_+	DUF3180 domain-containing protein	NA	NA	NA	NA
AYQ69146.1\|2779680_2781069_+	hypothetical protein	NA	NA	NA	NA
AYQ69147.1\|2781184_2782096_+	DUF2520 domain-containing protein	NA	NA	NA	NA
AYQ69148.1\|2782092_2783019_+	pantoate--beta-alanine ligase	NA	NA	NA	NA
AYQ69149.1\|2783018_2783450_+	aspartate 1-decarboxylase	NA	NA	NA	NA
AYQ69150.1\|2783452_2784268_+	type III pantothenate kinase	NA	NA	NA	NA
AYQ69151.1\|2784314_2785814_+\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	3.3e-74	36.6
AYQ69152.1\|2785957_2786296_+	Lsr2 family protein	A0A2D1GPL8	Mycobacterium_phage	2.1e-16	41.5
AYQ69153.1\|2786632_2789164_+\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	3.0e-128	39.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP033427

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection