CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP032521	Alcaligenes faecalis strain J481 chromosome, complete genome	3 crisprs	csa3,DinG,cas3,DEDDh,PD-DExK,WYL,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	1	11	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP032521_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032521_1

1655910-1656054

Orphan

Consensus_repeat	Method
TCTAAGTCTCTAAGTCTCTAAGTCTCTAAGTCT	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP032521_1

>merge|CP032521|1|1655910-1656054|CRISPRCasFinder
TCTCAGTCCCTTTATCTTTAGGTCTTTAAGCCTGTGGGCCATTGGGCTTCTAAGTCTCTAAGTCTCTAAGTCTCTAAGTCTCTAAGTCTCTAAGTCTCTAAGTCTCTAAGTCTCTAAGTCTCTAAGTCTCTAAGTCTCTAAGTCT

>CP032521|1|1|1655910-1656054|CRISPRCasFinder
TCTCAGTCCCTTTATCTTTAGGTCTTTAAGCCT	GTGGGCCATTGGGCTTCTAAGTC
TCTAAGTCTCTAAGTCTCTAAGTCTCTAAGTCT	CTAAGTCTCTAAGTCTCTAAGTC
TCTAAGTCTCTAAGTCTCTAAGTCTCTAAGTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP032521.1\|AYR20263.1\|1664845_1665880_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
CP032521.1\|AYR20249.1\|1644401_1645841_+\|deoxyribodipyrimidine-photo-lyase	unknown	unknown	gnl\|CDD\|223492
CP032521.1\|AYR20260.1\|1661931_1662336_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379583
CP032521.1\|AYR20261.1\|1662676_1663135_+\|tripartite-tricarboxylate-transporter-TctB-family-protein	unknown	unknown	gnl\|CDD\|377815
CP032521.1\|AYR20262.1\|1663151_1664657_+\|tripartite-tricarboxylate-transporter-permease	unknown	unknown	gnl\|CDD\|225870
CP032521.1\|AYR20254.1\|1656402_1657368_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
CP032521.1\|AYR20250.1\|1645859_1646438_+\|hypothetical-protein	unknown	unknown	unknown
CP032521.1\|AYR20252.1\|1647669_1648014_+\|hypothetical-protein	unknown	unknown	unknown
CP032521.1\|AYR20245.1\|1639515_1640475_-\|threo-3-hydroxy-L-aspartate-ammonia-lyase	unknown	unknown	gnl\|CDD\|235918
CP032521.1\|AYR20255.1\|1657379_1658486_+\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
CP032521.1\|AYR20253.1\|1654427_1654718_+\|hypothetical-protein	unknown	unknown	unknown
CP032521.1\|AYR22146.1\|1641751_1642504_-\|hypothetical-protein	unknown	unknown	unknown
CP032521.1\|AYR20257.1\|1659668_1660199_-\|peptide-methionine-(S)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|237597
CP032521.1\|AYR20259.1\|1661616_1661928_-\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|377476
CP032521.1\|AYR20246.1\|1640676_1641747_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
CP032521.1\|AYR20258.1\|1660526_1661324_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|234599
CP032521.1\|AYR20247.1\|1642639_1643698_-\|dihydroorotase	unknown	unknown	gnl\|CDD\|235474
CP032521.1\|AYR20251.1\|1646820_1647186_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226197
CP032521.1\|AYR20248.1\|1644017_1644296_+\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|349489
CP032521.1\|AYR20256.1\|1658691_1659672_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225901

Protein	Function_ID	Function_description	E-value
CP032521.1\|AYR20249.1\|1644401_1645841_+\|deoxyribodipyrimidine-photo-lyase	gnl\|CDD\|223492	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair].	4.95995e-173
CP032521.1\|AYR20260.1\|1661931_1662336_-\|hypothetical-protein	gnl\|CDD\|379583	pfam14362, DUF4407, Domain of unknown function (DUF4407). This family of proteins is found in bacteria. Proteins in this family are typically between 366 and 597 amino acids in length. There is a single completely conserved residue R that may be functionally important.	0.000513261
CP032521.1\|AYR20261.1\|1662676_1663135_+\|tripartite-tricarboxylate-transporter-TctB-family-protein	gnl\|CDD\|377815	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family. This family consists of several hypothetical bacterial proteins of around 150 residues in length. This family was formerly known as DUF1468.	2.77585e-07
CP032521.1\|AYR20262.1\|1663151_1664657_+\|tripartite-tricarboxylate-transporter-permease	gnl\|CDD\|225870	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown].	0
CP032521.1\|AYR20254.1\|1656402_1657368_+\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	2.01148e-59
CP032521.1\|AYR20251.1\|1646820_1647186_-\|hypothetical-protein	gnl\|CDD\|226197	COG3671, COG3671, Predicted membrane protein [Function unknown].	1.19323e-17
CP032521.1\|AYR20245.1\|1639515_1640475_-\|threo-3-hydroxy-L-aspartate-ammonia-lyase	gnl\|CDD\|235918	PRK07048, PRK07048, threo-3-hydroxy-L-aspartate ammonia-lyase.	0
CP032521.1\|AYR20263.1\|1664845_1665880_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	6.76335e-28
CP032521.1\|AYR20258.1\|1660526_1661324_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|234599	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed.	1.27671e-117
CP032521.1\|AYR20259.1\|1661616_1661928_-\|cell-division-protein-ZapA	gnl\|CDD\|377476	pfam05164, ZapA, Cell division protein ZapA. ZapA is a cell division protein which interacts with FtsZ. FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. The interaction of FtsZ with ZapA drives its polymerization and promotes FtsZ filament bundling thereby contributing to the spatio-temporal tuning of the Z-ring.	9.64056e-22
CP032521.1\|AYR20246.1\|1640676_1641747_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
CP032521.1\|AYR20257.1\|1659668_1660199_-\|peptide-methionine-(S)-S-oxide-reductase	gnl\|CDD\|237597	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase.	1.90815e-90
CP032521.1\|AYR20247.1\|1642639_1643698_-\|dihydroorotase	gnl\|CDD\|235474	PRK05451, PRK05451, dihydroorotase; Provisional.	0
CP032521.1\|AYR20255.1\|1657379_1658486_+\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	2.5139e-37
CP032521.1\|AYR20248.1\|1644017_1644296_+\|DNA-topoisomerase-III	gnl\|CDD\|349489	cd10567, SWIB-MDM2_like, SWIB/MDM2 domain found in SWIB/MDM2 homologous proteins. This family includes Schizosaccharomyces pombe upstream activation factor subunit spp27, Saccharomyces cerevisiae upstream activation factor subunit UAF30, Chlamydiae DNA topoisomerase/SWIB domain fusion protein, Arabidopsis thaliana zinc finger CCCH domain-containing proteins, AtC3H19 and AtC3H44, and similar proteins. S. pombe spp27, also termed upstream activation factor 27 KDa subunit (p27), or upstream activation factor 30 KDa subunit (p30), or upstream activation factor subunit uaf30, is a component of the UAF (upstream activation factor) complex which interacts with the upstream element of the RNA polymerase I promoter and forms a stable preinitiation complex. S. cerevisiae UAF30, also termed upstream activation factor 30 KDa subunit (p30), is a non-essential component of the UAF. It seems to play a role in silencing transcription by RNA polymerase II. The SWIB domain found in Chlamydiae DNA topoisomerase may play a role in chromatin condensation-decondensation, which is characteristic of the chlamydial developmental cycle and not found in any other types of bacteria. AtC3H19, also termed protein needed for RDR2-independent DNA methylation (NERD), is a plant-specific GW repeat- and PHD finger-containing protein that plays a central role in integrating RNA silencing and chromatin signals in 21 nt small-interfering RNA (siRNA)-dependent DNA methylation on the cytosine pathway, leading to transcriptional gene silencing of specific sequences. This family also includes many uncharacterized proteins containing two copies of SWIB/MDM2 domain.	5.0662e-36
CP032521.1\|AYR20256.1\|1658691_1659672_+\|hypothetical-protein	gnl\|CDD\|225901	COG3366, COG3366, Uncharacterized protein conserved in archaea [Function unknown].	0.000323522

>CP032521.1|AYR20253.1|1654427_1654718_+|hypothetical-protein
MLACLLACLLACLLACLLACLLACLLACLLACLLACLLACLLACWLAGWLAGWLAGWLAGWLAGWLAGWLAGWLAGWLAGWLAGWLAGWLAGWLAG
>CP032521.1|AYR20252.1|1647669_1648014_+|hypothetical-protein
MPIHVTTRGKPKEKGRTTAVQKKEGRRLRAVLGLPHAKRGGYPKYAAQEEEGEEGRQQCATAIQRKDSRTKDAQNGPGGRKGRPNEMIAEIRSLCRQNYAVRTRLGSRVYLWRA
>CP032521.1|AYR20251.1|1646820_1647186_-|hypothetical-protein
MNQPISPELEPGLSLRKITHICYGLFSLAMISAGIFGAAAVAAVILAYVKRGDASGTIYASHLDWVIKTFWWGLLWVVLSALLTTIFIGWVAALVALVWIVHRLIKGWLALAGGQALGHDY
>CP032521.1|AYR20250.1|1645859_1646438_+|hypothetical-protein
MSDSFKRPSPISTSVLLQNLQAAHPQAQVAVLDFSADHAEISLAHQGAPVHTEHFPELSAVQLLANCFSDSSSRQAQLEHAIEVVEDAIMPASLDLRQFTVFATGECTEELHAWLHAAQSNEPYILNRDMIDDLFTLYAAASQGAVSLKMINAGSLENIHQLVNNQNLGIYLLLLRECMHHMHIEQVHLLAP
>CP032521.1|AYR20249.1|1644401_1645841_+|deoxyribodipyrimidine-photo-lyase
MSISTAPDQTPRVLCWLRRDLRLHDHAALHHALKSGLPVACVFIFDSTILDSLPADDVRLAFIHDSLLQVQELLRHYGSELITAHGDPVQKIPELANRLNAKAVYANEDYEPATMARDQTVSHTLSGQGIELKLFKDQVIFARDEILTQQKQPYTVFTPYKRNWLARIQSEDAQAYDCSHGKWAALPEQALPSLEELGFQEKSRAKRLSPAGWQGAQTLLEQFEPRIHAYHERRDFPAKRGVSYLAPHLRFGTLSIRQAVSLAWPNDSDGAATWLSELIWREFYQQFLWHHPETATESFKPAYKDLPFPNRQDWFQAWKEGRTGYPIVDAAMRQLNQSGYMHNRLRMISASFLVKDLLIDWRWGEQYFAQKLLDYDMASNVGGWQWAASTGCDAQPYFRIFNPITQSRKFDPDGQFIRRYVPELASLDKQAIHAPWQAKQLPIEFRSGKDYPAPIVDHDTQRHLALALFKQAGEQEQAD
>CP032521.1|AYR20248.1|1644017_1644296_+|DNA-topoisomerase-III
MASTEKKPATRKPNAAFMKPLTPSPTLAAVIGSGALPRTEVTKKIWEYIKKHDLQDPKNRRNINADDKLRPLFGKDQVSMFELTKLVSAHLK
>CP032521.1|AYR20247.1|1642639_1643698_-|dihydroorotase
MSPTVDTLVIRRPDDWHLHLRDGAVLESVLGHTAAQFDRAIVMPNLTPPVTATAQALAYRERILSALAKTKYVGKFEPLMTLYLTDNTQPEEIVRAKESGFVHGVKLYPAGATTNSDAGVTDLLKNCSKVLAQMQKSGMPLLMHGEVTDPSIDLFDREAVFIERVMIPMRKAFPELKVVFEHLTTAEGAAYVSQAEGPVAATITAHHLLYNRNALFQGGLQPHWYCLPVLKREKHRQALVDAATSDSNRFFLGTDSAPHSRSRKEQSCGCAGCYTALHAMELYTSAFDKAGRLDRLEAFASLNGPAFYGLPVNEGTMTLQRRPFTIPESVEMAGEPLIPLAAGQALDWSVVS
>CP032521.1|AYR22146.1|1641751_1642504_-|hypothetical-protein
MAATALVVVLVSWSVGAFGPLVGGALAGLPMVLGPGFYFLSQQFPADYVQQAATYAVYSLSATQLFLLLIILCAPNLSPWRTLLCAVAAWAVAALLLSFMPVQPVLGLALFIAVTAFSLCASRRLAGMKGTSKAKAGWGLLIFRGALAGLLVAIVTTSSSLLGPSLSGLMMAFPIGYTVVAVTIHQTLGAASLVATLRSALWGTGSLAGFCTTLALVFTYMHWLPALLLAAAVSIAITLLLVFRPWARRG
>CP032521.1|AYR20246.1|1640676_1641747_+|Holliday-junction-branch-migration-DNA-helicase-RuvB
MAIHSDSLSSLPSEQRIITPKPLTPNEESIERALRPKMLQDYVGQARAREQLEIFIAAARQRQEALDHVLLFGPPGLGKTTLAHIIAHEMGVNLRQTSGPVLERPGDLAALLTNLEPNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYDVKDLTHIVARSAGLLNVSTTDEGTYEIARRSRGTPRIANRLLRRVRDYAEVKTGGIIHTECAQAALSMLEVDPQGLDLMDRKLLEAIIHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGFLQRTPRGRIATLNTWRHLGLTPPRNTQGQDLFEAE
>CP032521.1|AYR20245.1|1639515_1640475_-|threo-3-hydroxy-L-aspartate-ammonia-lyase
MSLELPDFSDVVAAAERLASVAHRTPVLTSATLNERLNGEVYFKCENFQRIGAFKFRGGFNALAQLNEQQRKAGVVAFSSGNHAQAVALSAKLLGIPATIIMNSDAPAAKLAATRGYGANVIEYDRLTQDRAQIAQDLVEREGLTLIPPFAHPDVIAGQGTAALELFQDVPDLQQFYVPLGGGGLLSGCLLAAKAMAPACEVFGVEPQAGADAQQSLRSGEIVKIAPPASIADGALTQALAPMTFELIRSMVTDILTVPDIELVQAMRFFAERMKMVVEPTGCLGAAAAMRQGDLQGRKVGVLISGGNVDVSALGRLLA
>CP032521.1|AYR20254.1|1656402_1657368_+|sulfurtransferase
MIKSILISLAFAFSTVLAPAARAEPSTPETAAKPAALISAADLATKLDQNNLRVLDIRTDKEYAAGHVPGAVHTPYGAYRGPAENAGALRSEADLSALFSKAGISKDSYVVVTYAGANPTDFGAAARVYWTLKAGGLTQLSVLDGGLQAWEAEGKPLSKDTATVTPTEFSYHYNNDMVVSTQEVADYIKNGQAPILLDARPTEFFKGEKRVDAAARYGTLPGARELDFNSFFRSDKPILKDTGELVRIVKEQGLDDKPTVSFCNTGHWAATNWFVLSELAGNPNVKLYPESVVEWSRSNLPMDNQPSRFKVLKLEAKRAIN
>CP032521.1|AYR20255.1|1657379_1658486_+|YeeE/YedE-family-protein
MLYLTRLGFILASLALIVGVALVGGLRQGLLALLGIGFGAVLQGARFGFTTGWRNYIERRDPQGIWAQMLLLVLAAAFTLPLIADSGGELVGAIAPLTISLVLGAFLFGAAMQLADGCGSGTLYKAGAGAPISFAVLPTFAIGSFLGASHQPGWIALGGLPAIDLTVSLGWPTALLITVLGCAAVSWFVGRGARRHQKEHNSAPAKWEIRWWMGALLLAVLYAIHMIVAGQPWGIVYGIGLWGAKVFSALGWTPVGDAFWGVAPHAQRLAEPVLADVTSVTNFGLILGAMAASRWNHPANFKSPNPRTLWVGAIAGLVMGYSARMAFGCNVGAFLGGIASASIHGWVWFALAFAGSIIGVRIRRRVNP
>CP032521.1|AYR20256.1|1658691_1659672_+|hypothetical-protein
MLTFLRTTLSRSLRMFYTVARIMVPIMIAVRIAAQLGLIEQVGTLIGPVMALVGLPPEAGIVWATTALAGIYAGIGSMAALGESLSFNVAQISVLGTMMLFAHNLPMEQAIVRRAGASFWFTATLRVVCALLYGSLLAWGLNSAGLLQEPVSLAWLYGQSNATQGGWQGWIDWLWGTASSLFMTWLIILGLLLILSVLEKIGFTRLLTRLLLPLLRFSGLEERVAPTTTIGVLLGLSYGGALIIDESRQQNYSPRTRLLALSWLSLSHSLIEDTILILALGANIWVALVGRLVLTLLIIGLIARLTLPGSALYRRYLACASHPQDA
>CP032521.1|AYR20257.1|1659668_1660199_-|peptide-methionine-(S)-S-oxide-reductase
MKETAILGGGCFWCTEGVFKALQGVQSVVPGYCGGHVENPTYEQVCGKQTGHIEVVKVEFDPSVISYRDLLEVFFLTHDPTTPDRQGADQGPQYASAIFCQNEEQRRQAFDVIEEIKSQFDAPIVTHVLDSPTFWEAEDYHHNYFALHPEQAYCQMVIAPKLKKFYQRFQDLLVKS
>CP032521.1|AYR20258.1|1660526_1661324_+|prolipoprotein-diacylglyceryl-transferase
MLIHPQFDPIAIQLGPLAIHWYGLMYLVGFGLVWLAGMARIRAGSALLTRKDLEDLIFYCVLGVVVGGRLGYILFYKPSYYLSHPLEILYIWQGGMSFHGGLIGVLVTIALFAHNRQHRFLEISDFLAPLIPLGLAVGRLGNFINGELWGRPSDVPWAMVFPQVDASPRHPSQLYEMALEGIALFILLWWFTRRPRSVGQTSALFLIGYGFFRFMVEYTREPDSYLGLLSAGLSMGQWLSLPMIIAGLAMFAYASKRGITPGSQK
>CP032521.1|AYR20259.1|1661616_1661928_-|cell-division-protein-ZapA
MERVDISLLGRDYSLACPPSEKARLLEAVKLVDQRMQAIKGSGRVSGNERIAVMAAIQIASEFLSAKAPDGPLANVAFGDFKRKIEDMHAMIDDVIEPSGTSR
>CP032521.1|AYR20260.1|1661931_1662336_-|hypothetical-protein
MLQDLDFLADRIGQLVEQSRQLNAERAQLLARLKTQDAELDALRQQNRRQQDEFESLSTGVASHQRQLDVVQQQAQADQAELKKLLEQEQAQVVALRRELDSARAGMGVLRDVAGQARDQIGSILMRLPGAVQE
>CP032521.1|AYR20261.1|1662676_1663135_+|tripartite-tricarboxylate-transporter-TctB-family-protein
MQIKNKQDFWSGVMFVVVGAAFSLGATSYSMGTAARMGPGYFPFWLGVCLSLLGAVVTLNSLSAKAENTEIEKFNWKVVFVIIGAVLLCGLTLNSLGVYASIFLLVMVSSFASHEFSWPIALGAAVFLVLFVWLAFIKGLGLVFPLWPSFLA
>CP032521.1|AYR20262.1|1663151_1664657_+|tripartite-tricarboxylate-transporter-permease
MELFDNLMLGFSVAVTPENLAYALLGCILGTLIGVLPGIGPVPTIAMLLPITYVLPPVAGLIMLAGIYYGAQYGGSTTAILVALPGETSAVVTVLDGHQMARNGRAGAALAIAALGSFFAGCVATILLAAFAPPLAEVAFKFGPAEYFSLMVLGLVGAVVLASGSLPKAICMILLGLLLGMVGTDVNSGVARYDFGIPELQDGIDFAVVAMGVFGFSEIMNNLELGDQRVEITGKVGSLYPNKQEFKECWPAVIRGTAMGSCLGILPGGGAVLSSFASYTLEKKISRNPERFGKGHPAGLAGPESANNAAAQTSFIPLLTLGIPGNAVTALMIGAMTIHNIQPGPQVMTSHPELFWGLIASMWIGNLMLVILNLPLVGLWVKLLKVPYRLLFPAILVFCTVGVYSLNYNVFDILVTAAFGFVGYVWSKLRCEGAPLLLGLVLGPMMEENFRRALLLSRGDYTTFVTRPLSLSLLVLAAILVVIVALPSVKKKRDETFVEED
>CP032521.1|AYR20263.1|1664845_1665880_-|FAD-binding-oxidoreductase
MTHKCKVMVVGGGVMGASVAWHLTQAGAVVTLIDQGPGSTPSATSASFGWVGASASTPSDDPDAFALRLHALEEFKRLEQALGTLPVTVRGALSWGATKDETAASIAEHLAAGSRVESWSATQVRQKEPSLAALPDLAMWAPDDFALEPVDLARCFIQAAQAGGATVLSGKVQRVLSAGGRVSGVEMQGQAIYADKVVLANAYGALALAASAGVVLSIEQQPAVLLRLDADRALIRHVLCAQDLELRPGKERGLMSALDYPLEGEAGLQSLAEETCQSIVQLLKLPSVPRVLSIEVGQRPMTCDKLPLCGPIGSLDGLFAVVAHPGVILAPLLGRQCTQAVLAA

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Crispr_ID: CP032521_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032521_3

3470740-3471546

TypeI-F

I-F

Consensus_repeat	Method
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	PILER-CR
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	CRISPRCasFinder
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	CRT

13 spacers

cas1,cas3-cas2,cas8f,cas5f

The CRISPR arrays of CP032521_3

>merge|CP032521|3|3470740-3471546|PILER-CR,CRISPRCasFinder,CRT
GTTTGCTGCCGAGTAGGCAGCTTAGAAAGTACAGACGCGCCAACAGGCACGTCAACAATAGTTTGCTGCCGAGTAGGCAGCTTAGAAATAGCCGCTCCGTCGGTGCGTTCGGTCCCTCATGTTTGCTGCCGAGTAGGCAGCTTAGAAAAGAGACTTGATCGTATGCTGCAGGCACAAACCGTTTGCTGCCGAGTAGGCAGCTTAGAAAGGGGTTGATGTCAGCAGATTGACGCAATCAAAGTTTGCTGCCGAGTAGGCAGCTTAGAAACGAAATTGGCCGCGTGGCTCCGGACCAGGCGCGTTTGCTGCCGAGTAGGCAGCTTAGAAAGTTAGCAAGGACTGGGGCGATCGCTCGTCTGTGTTTGCTGCCGAGTAGGCAGCTTAGAAACGAAATATTAAGTGTTCTTTCGTCTAGATTGTGTTTGCTGCCGAGTAGGCAGCTTAGAAAATCGAAACAAGGTGCCGGGCTCTGAGACGCGAGTTTGCTGCCGAGTAGGCAGCTTAGAAAAAAGAGGAGGCCGCTGCGTTCCGTGAGACATTGTTTGCTGCCGAGTAGGCAGCTTAGAAATAGACGAGAAATACCCAGGCCGCGCACAGCCTGTTTGCTGCCGAGTAGGCAGCTTAGAAAATAGATCCCGGAATGGATCTAGACCCGTCGACGTTTGCTGCCGAGTAGGCAGTTCAGAAAAAGTATGGGCTGTGCTTTTTGCTAGGCGTTAAGTGTGGCGCGTCGTAAGCAGTTGAGAAAAGCTTCTGGGTTTGTATCGTGCGCAGATAAGGTTTGCTGCGATAGAGGCCGCTGAAAAG

>CP032521|3|1|3470740-3471367|PILER-CR
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	GTACAGACGCGCCAACAGGCACGTCAACAATA
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	TAGCCGCTCCGTCGGTGCGTTCGGTCCCTCAT
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	AGAGACTTGATCGTATGCTGCAGGCACAAACC
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	GGGGTTGATGTCAGCAGATTGACGCAATCAAA
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	CGAAATTGGCCGCGTGGCTCCGGACCAGGCGC
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	GTTAGCAAGGACTGGGGCGATCGCTCGTCTGT
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	CGAAATATTAAGTGTTCTTTCGTCTAGATTGT
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	ATCGAAACAAGGTGCCGGGCTCTGAGACGCGA
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	AAAGAGGAGGCCGCTGCGTTCCGTGAGACATT
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	TAGACGAGAAATACCCAGGCCGCGCACAGCCT
GTTTGCTGCCGAGTAGGCAGCTTAGAAA

>CP032521|3|3|3470740-3471546|CRISPRCasFinder
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	GTACAGACGCGCCAACAGGCACGTCAACAATA
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	TAGCCGCTCCGTCGGTGCGTTCGGTCCCTCAT
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	AGAGACTTGATCGTATGCTGCAGGCACAAACC
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	GGGGTTGATGTCAGCAGATTGACGCAATCAAA
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	CGAAATTGGCCGCGTGGCTCCGGACCAGGCGC
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	GTTAGCAAGGACTGGGGCGATCGCTCGTCTGT
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	CGAAATATTAAGTGTTCTTTCGTCTAGATTGT
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	ATCGAAACAAGGTGCCGGGCTCTGAGACGCGA
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	AAAGAGGAGGCCGCTGCGTTCCGTGAGACATT
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	TAGACGAGAAATACCCAGGCCGCGCACAGCCT
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	ATAGATCCCGGAATGGATCTAGACCCGTCGAC
GTTTGCTGCCGAGTAGGCAGTTCAGAAA	AAGTATGGGCTGTGCTTTTTGCTAGGCGTTAA
GTGTGGCGCGTCGTAAGCAGTTGAGAAA	AGCTTCTGGGTTTGTATCGTGCGCAGATAAG
GTTTGCTGCGATAGAGGCCGCTGAAAAG

>CP032521|3|1|3470740-3471487|CRT
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	GTACAGACGCGCCAACAGGCACGTCAACAATA
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	TAGCCGCTCCGTCGGTGCGTTCGGTCCCTCAT
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	AGAGACTTGATCGTATGCTGCAGGCACAAACC
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	GGGGTTGATGTCAGCAGATTGACGCAATCAAA
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	CGAAATTGGCCGCGTGGCTCCGGACCAGGCGC
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	GTTAGCAAGGACTGGGGCGATCGCTCGTCTGT
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	CGAAATATTAAGTGTTCTTTCGTCTAGATTGT
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	ATCGAAACAAGGTGCCGGGCTCTGAGACGCGA
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	AAAGAGGAGGCCGCTGCGTTCCGTGAGACATT
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	TAGACGAGAAATACCCAGGCCGCGCACAGCCT
GTTTGCTGCCGAGTAGGCAGCTTAGAAA	ATAGATCCCGGAATGGATCTAGACCCGTCGAC
GTTTGCTGCCGAGTAGGCAGTTCAGAAA	AAGTATGGGCTGTGCTTTTTGCTAGGCGTTAA
GTGTGGCGCGTCGTAAGCAGTTGAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP032521.1\|AYR21711.1\|3461309_3461936_+\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|183245
CP032521.1\|AYR21717.1\|3466001_3466694_-\|dethiobiotin-synthase	unknown	unknown	gnl\|CDD\|234625
CP032521.1\|AYR21719.1\|3468037_3469204_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
CP032521.1\|AYR21723.1\|3473404_3474595_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225406
CP032521.1\|AYR21725.1\|3477844_3478957_+\|YncE-family-protein	unknown	unknown	gnl\|CDD\|225926
CP032521.1\|AYR21715.1\|3465285_3465606_+\|RNA-polymerase-subunit-sigma-24	unknown	unknown	gnl\|CDD\|274376
CP032521.1\|AYR21721.1\|3471681_3472926_-\|benzoate-transporter-BenE	unknown	unknown	gnl\|CDD\|281578
CP032521.1\|AYR21720.1\|3469200_3470397_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
CP032521.1\|AYR21712.1\|3462089_3462740_+\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100079
CP032521.1\|AYR21718.1\|3466690_3468031_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|235894
CP032521.1\|AYR21727.1\|3481442_3482423_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|187849
CP032521.1\|AYR21729.1\|3486002_3487292_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|378220
CP032521.1\|AYR21726.1\|3478969_3481165_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP032521.1\|AYR21713.1\|3462819_3463725_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
CP032521.1\|AYR21724.1\|3474989_3477626_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
CP032521.1\|AYR21730.1\|3487288_3488311_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
CP032521.1\|AYR21716.1\|3465568_3465994_+\|DUF4880-domain-containing-protein	unknown	unknown	gnl\|CDD\|226235
CP032521.1\|AYR21728.1\|3482433_3485847_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|274201
CP032521.1\|AYR21714.1\|3463721_3464855_+\|outer-membrane-protein-assembly-factor-BamC	unknown	unknown	gnl\|CDD\|225854
CP032521.1\|AYR21722.1\|3472840_3473299_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP032521.1\|AYR21711.1\|3461309_3461936_+\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|183245	PRK11630, PRK11630, threonylcarbamoyl-AMP synthase.	1.90219e-77
CP032521.1\|AYR21717.1\|3466001_3466694_-\|dethiobiotin-synthase	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	1.24389e-80
CP032521.1\|AYR21719.1\|3468037_3469204_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	1.71559e-158
CP032521.1\|AYR21723.1\|3473404_3474595_-\|cupin-domain-containing-protein	gnl\|CDD\|225406	COG2850, COG2850, Uncharacterized conserved protein [Function unknown].	1.0592e-89
CP032521.1\|AYR21728.1\|3482433_3485847_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
CP032521.1\|AYR21715.1\|3465285_3465606_+\|RNA-polymerase-subunit-sigma-24	gnl\|CDD\|274376	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.	7.55643e-15
CP032521.1\|AYR21721.1\|3471681_3472926_-\|benzoate-transporter-BenE	gnl\|CDD\|281578	pfam03594, BenE, Benzoate membrane transport protein.	2.2498e-127
CP032521.1\|AYR21720.1\|3469200_3470397_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	4.28345e-56
CP032521.1\|AYR21712.1\|3462089_3462740_+\|site-2-protease-family-protein	gnl\|CDD\|100079	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.	2.2374e-70
CP032521.1\|AYR21718.1\|3466690_3468031_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|235894	PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional.	0
CP032521.1\|AYR21727.1\|3481442_3482423_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187849	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	6.0618e-179
CP032521.1\|AYR21729.1\|3486002_3487292_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	4.02309e-174
CP032521.1\|AYR21726.1\|3478969_3481165_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.18373e-97
CP032521.1\|AYR21713.1\|3462819_3463725_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	2.03122e-169
CP032521.1\|AYR21724.1\|3474989_3477626_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
CP032521.1\|AYR21730.1\|3487288_3488311_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	5.9645e-152
CP032521.1\|AYR21716.1\|3465568_3465994_+\|DUF4880-domain-containing-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	0.000529635
CP032521.1\|AYR21714.1\|3463721_3464855_+\|outer-membrane-protein-assembly-factor-BamC	gnl\|CDD\|225854	COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane].	2.08894e-38
CP032521.1\|AYR21725.1\|3477844_3478957_+\|YncE-family-protein	gnl\|CDD\|225926	COG3391, COG3391, Uncharacterized conserved protein [Function unknown].	3.85885e-13

>CP032521.1|AYR21720.1|3469200_3470397_-|cytochrome-P450
MFGDLNLASPYPAYASLRQGPPLVWDADFCGGAWLVHRHGDVQAALRHPDLSVRRVGGWVSQAGAPPSPRLQTFKGLMARTLVFLDRPRHTRVRRVVNAAFSAKALESLHGTIEKRVAQIHLGLENKLQHGSADLVDEVCRPLPALVMMDVLGLQQLPLSVFQVWSEQLARFIGQATPDQPLLMDTQDALLDMADFLGNSANLQEGGLAWRLLHDEQLSFQGRRERLAQSCMLLFAGYETSRHLLSSLFQTLLDDCTKQQDLLSNPQKIPAAIKEVLRHDSPIQYTARRLMQDQHWHGQHLRKGQLLLLLLGAANRDPEVFAHPDKLDFSRNNQAELSMGHGIHHCLGAGLVQLEARLTLEPFLPLLPRLQLGQGERIQLPAYRGWNRLSVQYRALPS
>CP032521.1|AYR21719.1|3468037_3469204_-|8-amino-7-oxononanoate-synthase
MSAFLCHLDQQLKALKAKKLWRQRAISRPLPNAHIERNGQVLLNFAGNDYLGLSQHPALKQLQAQDVAGATASPLICGHHAQAQALEQDLADWSGFEASRLFVSGYQASLGVIPALVGKEDTIFCDRLNHASLIDASRLSGARLRVYPHRDMARLDDLLSRPTTGFKLVISDSLFSMDGTIAPLDGLIALCERHDALLYLDDAHGLGVLGETGRGAPEHFQLKATQRQHLIYLGTFGKAAGQGGAFIACSHSLADWLTQSARSYVYSTGLAPAHCASLLACLQLIKQAQAQRTLLTEHIQTLQTLSQNLPWRLAPSETPVQSLLIGEVEPTLQLSETLLQKGIWAPAIRAPTVPRHQARLRISLSAAHRHQDIEQLVQALHEAAHSLR
>CP032521.1|AYR21718.1|3466690_3468031_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MNSNSLPPLAQRSLQAVWHPCTQMQHHDRGVPLLAIKRAQGAWLYDAHGNAYLDAISSWWVNLFGHSHPHLVQAISDQVQQLDHIMLCGLTHEPVVQLSERLAALSDHRLGHAFYASDGASAVEIALKLSVHYWRNQGQEHKHRFVGIAQGYHGETLGALAVTDVPLFRENYGSQLGQQYTAASPDLRQAKSPDEHSQITENALQSLEQILNSHQDIAAVILEPLVQCAAGMCMHSPDYLRGVRELCDRYQVHLILDEIAVGCGRTGTFFACEQAGIWPDLLCLSKGITGGTLPLSVVLSSPTIYQGFYDQDLRRGFLHSHSYTGNPLACRAALATLELFQQYPVYELQKTLGQALDDGLHKLNRQYPKMQHLRRCGVIWAFDLDTGPARYDHQGFARRFYHSALQQGLMLRPIGNTVYLMPGYLWGTKEIEHVLTGLGRLLKEYA
>CP032521.1|AYR21717.1|3466001_3466694_-|dethiobiotin-synthase
MRACFVTGTDTEIGKTLVSSALLHVLNQSGARTLGIKPIASGAEEINGCLHNEDVDALARHSSLNAAPETLTPYLFKPAAAPHILAEQAGIELEPTLIQKTVQAAVKSADYVVVEGVGGFMLPLGQGRTGVDLAQALQLPVVLVVGLRLGALNHALLTAQAIRASGLPLLGWVANHIAPEMSYAKENLQTLHDYLPGPCLGVIPRLNATTLDDRIQQAAHHLRSPWQEPA
>CP032521.1|AYR21716.1|3465568_3465994_+|DUF4880-domain-containing-protein
MGSCRVRLARMSKDEYMQHIDEQALSWLLKQHDPKHQSDARSQSAFRAWLSIDPQHQAAFLRWKLEWEAMDGISQEQLTNLRAASRQAAAGQGTWRQRVLNRCVDVWSANPALRFALGGAVCLLLGVAFLGSVGSYFLEAL
>CP032521.1|AYR21715.1|3465285_3465606_+|RNA-polymerase-subunit-sigma-24
MLKSFYRNGLRFCLRMLRGTQASAHAPSEPGARMLAMIEALPRRRREAFVLHRFEGLNYKEIATRMGTSPRVVEHYIRMAMLACRHNPAQANRVDGVVPRPAGSYV
>CP032521.1|AYR21714.1|3463721_3464855_+|outer-membrane-protein-assembly-factor-BamC
MIAKPVNKSLIGLSLSLLVLSGCSTMDQIMGQGESVNYKSTVAGDPLSIPPDLTQANRDAHYRAPEGATSYSVYSQGQNAQQLKGGADDILPQSDAIKVMRDGDLRWLVVDRPVEDLFPRIIEFWGDHGFTIQSQDPRAGLIQTDWAENRAKIPESWIRSALGSIIDQVFDSGERDRFRTRFERVGNKTEIYVSHQHMEETPTADGTAFKWVFAKEDPGLNAAMLARMMVFLGSDIETAREQVANATKDPAGVQVQTSDKGDQAELMLNESFDRAWRRVGVAIDSAGFSVEDRDRSAGEFFIRYLDSDTGEKIEQQNIIGRLFGSRNTAEATPFRIKLSAQGAGTRVTVLDQQGQEQTTATAKRIINVLSTNLRPGS
>CP032521.1|AYR21713.1|3462819_3463725_+|4-hydroxy-tetrahydrodipicolinate-synthase
MANSDSAISNFQGSMVALITPMDPNGGLDFAAYRKLIDWHIQEGTRVLVVVGTSGESPTVSVEEHAELIKVAVEHAAGRVPVIAGVGGNSTSEAIELSRHAQQVGADAGLSVVPYYNRPTQEGMYQHFRAIAEAVSLPQFLYNVPGRTVADLQNDTVLRLAQIPNIIGIKDATGDLARGGLLLRDAPEDFIVVSGDDPTAAAYILLGAKGNISVTANVAPRLMSQLCQAALDMDVPTVRRLNAYLAGLNKSLFIEANPIPVKWAVAEMGLTQLGYRLPLTPLSAQHHQLLRQSLKLADLLP
>CP032521.1|AYR21712.1|3462089_3462740_+|site-2-protease-family-protein
MDSFIQTLTVYALPVIFGITLHEAAHGYVARMFGDPTAMLAGRISLNPLRHIDPIGTIVVPAVLLLSSAMMGMGGILFGWAKPVPVDWGRLRNPKRDMLWVALAGPASNMLMAILWVLYAHLMVKLGQGDSRFWMGMAVAGVQVNLVLMALNLLPLPPLDGGRIVFSLLPNRWAYHYSRIEPYGMIILILLMFTGVLWTLMSPLIALGEGILKWFL
>CP032521.1|AYR21711.1|3461309_3461936_+|threonylcarbamoyl-AMP-synthase
MSQLFVVHPENPQPRALAQAAELLAKGGLLAIPTDSSYAVVARLDDKSAADNLRRLRGLDDRHHLTLLCRDLAEISHFAKVDNPQYRLLKMATPGPWTFILEATKEVPRRVSHPSRKTIGIRVPDQKVALALMEQVGSPLISTTLIPDGEDEPLNDAQEILDRYAHQLAAVVDGGPCPLQATTVIDLTGPTPDVLRRGSGDPSTLGLS
>CP032521.1|AYR21721.1|3471681_3472926_-|benzoate-transporter-BenE
MSTSRSSSSYLVSDLIPPIVAGLISVIVNYGGTFILVFQAAKVAGLSPELTASWVWSISIGVGVTGLLLSWVSREPIITAWSTPAAAFLVTALATTPYEEAIGAYLISAAAFVALGLSSYFERLIRLIPNGIAAGLLAGILLQFGIGAFGSMTLDPKLAGLLILAYLIIKRFSARYAVVGILILGLSFLLLEHRVDLSGLKLELAAPVFTMPVFTLNALLSVALPLFLITLTGQYMPGMLVLRNDGFRTSANPIVWVTGLGSLIMAPFGSHAMNVAAITAAICTGPEAHQDPSKRWVAGIAAGVFYILIGVFGLTLAAVFMAFPATFITTLAGLALLGTIGGSLAGAMADVKSREAALITFLASAANITLFGIGGAFWGLVIGLLAYFILNGKLPQRKTEKLSNDGLPAASDAR
>CP032521.1|AYR21722.1|3472840_3473299_-|hypothetical-protein
MLVEVAVAVAVAVAVAVAVAVAVAVAVAAALFTPCSNKKYYHEKRDSQDEQLVIKPLLVALQPSFNPVRATLKNHVATPLNIVRHLLNSKVVCPTPEKRPIRPVHLVAITSARLSSLLLESAEHYVYLSIILILFSQRSDPAYRGRPHLGHR
>CP032521.1|AYR21723.1|3473404_3474595_-|cupin-domain-containing-protein
MTIDQPLTLLGGISAHEFMQTYWQRKPLLIRGAIPNFKHSLSIDNIRELVTREEVESRLIIHDGDDWEMETGPFDELPPASQPNWTALAQSVDLHDDNTAALMRQFRFIGDARLDDAMISIASDGGGVGPHFDSYDVFLLQAHGKRHWRISQQKDLSLVPDLPLKILRNFQVEEEFTLEPGDMLYLPPHVAHDGIAIGDCMTISIGFRSPTQATLARGLMDAASDQLAAASGEGFGLYADPPIPMPESMQQRYTDPDAQASTTPAALPENLIQKSLDALNAIRFDEALASRFLGVWLTELPSNSWFDIAEDPVDLHDPELPEGRLALDRCSRMMYRSDELYINGEVAPCPASPALKLLADQRQLSIPSEHFEALDEDEREMLNAWLDDGWLQFKEN
>CP032521.1|AYR21724.1|3474989_3477626_-|DNA-mismatch-repair-protein-MutS
MTSAADLSAHTPMMRQYLQLKAEAGSHLLFYRMGDFYEMFYADAERGARLLNLTLTKRGSSNGEPIPMAGVPFHAMEGYLARLVALGESVAICEQVGDPATSKGPVERKIMRVVTPGTLTDDALLPPKADRLIAACTLIKVQRQEMVGLAWMNLASGEFLVSQCEPDMLDTELNRIGPVELVYPESLRPAPELPQASCHTLPDWHFAQDGSRETLLDHFDLDSLASFGLDDLPAATAAAGALLRYVGSTQSQSLVHITAIRVQHSSDFLVLDAVTRKNLEITETISGETSPTLFSTLDHCQTPMGSRLLRRWLHHPLRLNHAVQQRQDVVSLFFQTQQSASLNAGDPLGVLRHALRRFPDLERIATRISLRSVRPRELASLRDALATLPELRQELEHNFAQSEHLYGHLLNLALDPELASLLQAALAPEPALLVRDGGVIADGYDADLDELRSLASDSGDVLVKIEARERERTGIATLRVEYNRVHGFFIEVSRGQADKVPDDYRRRQTLKNAERFITPELKEWEDKVLSAKDRSLSREKFLFDELLDKLQSYAGPLALCSNALAELDTLSSLALHALDNNWVAPELSEQAGIWIEAGRHPVVEHSIERFTPNHCEMHAQRRMLLITGPNMGGKSTYMRQVALIALLARIGSFVPANTARIGQIDRIFTRIGAADDLAGGRSTFMMEMTEAAAILAGATPYSLVLMDEIGRGTSTYDGLALAWSIAHRLLSHNQALTLFATHYFEITRLPNELPAAANVHLAAAESASGIVFLHEVQEGPASRSYGIQVAQRAGIPSAVIRQASRELSRLEAQNDPSAQLDLFNAGSAPEATATESDPTTEQALELLDQFKQLDVDDLSARDALDLLYRWKKEMKSAG
>CP032521.1|AYR21725.1|3477844_3478957_+|YncE-family-protein
MLTRCLALSVLSAALLSAGSLAHAQPSEAVSLPLTPELAQKTSITAEGALRKDLAYGIYQAVYSPFDNSLYVASAERAPSVRGGVIYKLDPITLDVKGTMYTDQSNFGLARNASGDTLYVTNSLAAAVSKVGLKEDGNIERVHFNNKSFDDTKMGPRTIRHDPQQGRIYVGAVGAPAVIWVLDDRTLELIDTIENAGKWVTGLWVDSASHRLYAANGDGEVMVVNTQTNQIEQRWKPAGVKPALLLNFALDSSRNRLYVTETKDQKTVYVLDARDGKLLQTLPVGDAMDILYNADRDELYLTHREQGKVSVLDGASYAVKAQYNLPDNPNSLELGPDSQLYVTVKAPATPQYKASKRESVVRIDLKNIKG
>CP032521.1|AYR21726.1|3478969_3481165_+|TonB-dependent-receptor
MTSLFKPCLGRTLALSLFALHVQAQAQDNVNRAQAQELSTITVNASADASRQGLLPEYAGGQVASGGRVGILGSLDNMDSPFSVNSYTSRYIEQLQASTVADVVRHDPSVRVARGFGNFQESFFIRGFLTASDDIAYNGLFGLLPRQATAAELAERIEVLHGAGGFLYGAAPSGGGIGGTINVLPKRAGENPLTKLGVGYGSGGQSQIKVDMSRRFADNAAGIRVNAIRRSGDTAVDNEHTRLDLYTVGMDWRGERVRLSADLGYQEHKLREVRPNVALKAGLSALPDSPSHKRNFAQPWTYSNEETVFGTLRGEYDLNDSITLWAAYGMKHGKEDNQLATQTVTDAVSGKTTFSRFNNSRRDDVKTGELGLRARFETGPVLHELVAAASLYDHKEKNAWAMGSKQDSNLYDPVNQALSPIAFTGGDLGSPALVGRTKLTSYTLGDLMYLWDDRLEVMLGLRHQIMETRSYDYGTQALQRKDRQQHTSPAAGVVFKLTDEWALYGNYTESLAQGDLAPTRFNNQPVQNAGQRLSAFVAKQKELGVKYDNGSLGGGLTFFTTTKPRGVVNDDLRFVEAGKDRHNGLELSFYGQLTDSLRILGGVTALDTKQKNTGDPLSEGQRVIGVPRWQGSLGLTWDVPQVTGLSLDTQLLATGARYADSANAIRVPGWVRWDLGASYQRKISGVPMTFRASVENVADTTYWASVGGYPNNGYLVLSQPRTFMLSMSAEF
>CP032521.1|AYR21727.1|3481442_3482423_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MNPIAASDLKTILHSKRANIYYLEHCRVLLNGGRVEYVTDAGKKALYWNIPIANTTCILLGTGTSLTQAAMRELAKAGVLVGFCGGGGTPLFAGTPMDVEVAWLNPQSEYRPTEYVQAWVQFWFKEDLRLQAALKLQSLRLKFLRSQWGRREIQEMGFQPPLSELDALLEKSASSLQYAPDLAHVLTEEARLSKALFRIAANAVQYGQFSRVKKGQGLDPANRFLDHGNYLAYGLGATACWVLGLPHGLAVLHGKTRRGGLVFDAADLVKDAIILPQAFLSAMRGDQEQEFRRQCIEALTRSESLDFMIDSLKDIATRISAAAVDS
>CP032521.1|AYR21728.1|3482433_3485847_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLVSQCTKQALAQTRRILDQFAERRGERTWQTAMTQAGLDTLRKLLRQTARKNTAVACHWIRAKDHTELLWVVGNRSQFNEYGAVPTHSTARDVLRQADENNWHTLSLINLLSGLAALLHDLGKSCQSFQDRLRPGSLPEKNRYRHEWVSVRLFQAFVGKDDDQAWLTRLIQAGQKQADAQAFEQIWLGESDHALFKDGLDKNATQHRPFAQDGSGLPPLAQAIAWLVLTHHRLPACPDDLNPDPERSHWHGKKPYSGSALQIERLLDRVDADWNEPWPEHTDTQDLERCQPYWHFPHGLPVRTWLWRQRAARFAKALQQHVLNGKDMLHDPYVMHLSRLSLMLADHYYSGLKKQQYRLQGENNFPLYANTDRATGQLLQPLDEHLLGVEYQAGKLVYSLPSLKGQLPHLIAHRKLKQRSAEARFRWQDKAADLAVAVRQASKDRGAFIVNMASTGCGKTLANARMMNALADPAVGLRCAFAIGLRTLTLQTGRSFQTDLGLDEDALAIQVGGSSQKALFEYYEQLAEHSGSASRQSLIDESSHVIYESNTDHPALKQLAHEPGAQKLLSAPLLVCTIDHLTPATESLRGGRQIAPMLRLLTGDLVLDEPDDFDLADLPALTRLVHWAGLLGARVLLSSATLPPALVQGLYLAYAAGRHWFERNRGQNPALSGPIPCLWIDEFHQTYVPCWQGQEFAAQHQVFIQKRVQALHCQVVRRQAELLALPKNMARLSKQERRKQFAEVARRGMFKLHKAHHCQDPNSGKRMSFGLVRMANINPLFDVAVALHQAGMPSGVQLHLCVYHSQYPQAMRSAIEHMLDQVLNRRQAQAVFDHPVVRQALDQSSAQDHLFVVLGSPVTEVGRDHDYDWALVEPSSMRSIIQLAGRVLRHRSDLQPREPNILLCNANLLHFDAGKGKPAFCRPGFEAGGPYLLESHLLEDVLKPLLDQKHQFPVDARARILPRALLQREPGKSLVDLEHARLETLMLPNDVNSLAPASFSLLNASSFWAEPQAHLLGFVQQMQPFREQTTQQVELVFLPDEDEVLRLHKVQDQERYGGKLYVSVDASLKHAVAVPEGNGTSKWQTESLEELMQRQAQEMDLSLEAFAYKFGTVSVGASENGWFWNEALGFSRKR
>CP032521.1|AYR21729.1|3486002_3487292_+|type-I-F-CRISPR-associated-protein-Csy1
MAEDDPKRPDLIAQYQVETWLADAARRVKQIQAVTHSLKPVHPDARGTNLYVDPSALAASPQLSSHVLHDNFASDVVGNAAALDVYKFLRLELDGLSILDRLQADDPAVLAAFCSDLEQAREWRDAFLGLLQDNGKSMSSHVLAKQLYWLVGEDCRDDAQYHLLAPLFPTSLVHAVHAVLQEDRFGEQIKQARQAQRDKVMHEHAVRWYPDLAVRKLGGTKPQNISQLNSERGGVNYLLSSLPPRWTSRSAPSPWGVESIFDSLLMQRREVRQQVGGLRRFLQSQPKPIQETRDRVDDYLARLIDELVSFAAELRVAWPAGWTAQSGCLLAREEQLWLDIERVRQEEVFRTEADQQFRAEWFWMDWPDQIGQRFARWINGRLDGYLPTGDVEYRHWKKELLIDQTYWADQLRTLRRQASLSKTSMKEPV
>CP032521.1|AYR21730.1|3487288_3488311_+|type-I-F-CRISPR-associated-protein-Csy2
MTSRIEALLLIPRLRIQNANAISSPLTHGFPAMSAFLGLMWALNRKLEKAGVPIVLEKVGVVCHSHQEQVHTGFVSTFNLTRNPVDKKGDTQAIVEEGRMHLELSLVFQARGQADSAQPLSLASQEQAQRQDWAKQIDECLATMRVAGGSVLGHQGGQRNPTMMLWPSDERERKEVFRMLRRRCLPGFALVSRQDLLQSHWATLKDKEPETSLLDAWLDLSRFNYRSQQMEDGSVKWQHDREGWIVPIPVGYRALGPLQEPGTVLNTRDTSTPFRFVESVYSIGQWLGPHHLNHPDELLWYAQYQEPAGSYLCCNAYQAPQLEPESSLSVLDDSVFDWAS

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Crispr_ID: CP032521_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP032521_4

3490183-3490693

TypeI-F

I-F

Consensus_repeat	Method
CGGTTCGCTGCCGCATAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCGCTGCCGCATAGGCAGCTTAGAAA	PILER-CR
GTTCGCTGCCGCATAGGCAGCTTAGAAA	CRT

8 spacers

cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1

The CRISPR arrays of CP032521_4

>merge|CP032521|4|3490183-3490693|CRISPRCasFinder,PILER-CR,CRT
TAGTTCGCTGCCGCATAGGCAGCTTAGAAATCTGACGCTAAAACCGCTGTTGGCCAGATCGCGTTCGCTGCCGCATAGGCAGCTTAGAAAAGGGTTACTTTCTTATTGAGGCCCACCCATTTGTTCGCTGCCGCATAGGCAGCTTAGAAAATATCGACGTACATAGCTGCCAGCGGGTAACGGTTCGCTGCCGCATAGGCAGCTTAGAAATATCAAGCCAAGGCCGTTGCTCTGACTATTCGGTTCGCTGCCGCATAGGCAGCTTAGAAAGTCAGAACTTCCTGACTGTCCTCGGTCACCCGGTTCGCTGCCGCATAGGCAGCTTAGAAAATGCCGTGGTGTCTGTTGGGCTGGATGGCACTGGTTCGCTGCCGCATAGGTAGCTTAGAAAGTCCGCCTGGGTCTGTCGGTGATGTCACTGTAGTTCGCTGCCGCATAGGCAGCTTAGAAAATCATCAAGGCGGGCTGGGTTGATTACCAGCAGTTCGCTGCCGCATAGGCAGCTTAGAAA

>CP032521|4|4|3490183-3490693|CRISPRCasFinder
TAGTTCGCTGCCGCATAGGCAGCTTAGAAA	TCTGACGCTAAAACCGCTGTTGGCCAGATC
GCGTTCGCTGCCGCATAGGCAGCTTAGAAA	AGGGTTACTTTCTTATTGAGGCCCACCCAT
TTGTTCGCTGCCGCATAGGCAGCTTAGAAA	ATATCGACGTACATAGCTGCCAGCGGGTAA
CGGTTCGCTGCCGCATAGGCAGCTTAGAAA	TATCAAGCCAAGGCCGTTGCTCTGACTATT
CGGTTCGCTGCCGCATAGGCAGCTTAGAAA	GTCAGAACTTCCTGACTGTCCTCGGTCACC
CGGTTCGCTGCCGCATAGGCAGCTTAGAAA	ATGCCGTGGTGTCTGTTGGGCTGGATGGCAC
TGGTTCGCTGCCGCATAGGTAGCTTAGAAA	GTCCGCCTGGGTCTGTCGGTGATGTCACTG
TAGTTCGCTGCCGCATAGGCAGCTTAGAAA	ATCATCAAGGCGGGCTGGGTTGATTACCAG
CAGTTCGCTGCCGCATAGGCAGCTTAGAAA

>CP032521|4|2|3490185-3490693|PILER-CR
GTTCGCTGCCGCATAGGCAGCTTAGAAA	TCTGACGCTAAAACCGCTGTTGGCCAGATCGC
GTTCGCTGCCGCATAGGCAGCTTAGAAA	AGGGTTACTTTCTTATTGAGGCCCACCCATTT
GTTCGCTGCCGCATAGGCAGCTTAGAAA	ATATCGACGTACATAGCTGCCAGCGGGTAACG
GTTCGCTGCCGCATAGGCAGCTTAGAAA	TATCAAGCCAAGGCCGTTGCTCTGACTATTCG
GTTCGCTGCCGCATAGGCAGCTTAGAAA	GTCAGAACTTCCTGACTGTCCTCGGTCACCCG
GTTCGCTGCCGCATAGGCAGCTTAGAAA	ATGCCGTGGTGTCTGTTGGGCTGGATGGCACTG
GTTCGCTGCCGCATAGGTAGCTTAGAAA	GTCCGCCTGGGTCTGTCGGTGATGTCACTGTA
GTTCGCTGCCGCATAGGCAGCTTAGAAA	ATCATCAAGGCGGGCTGGGTTGATTACCAGCA
GTTCGCTGCCGCATAGGCAGCTTAGAAA

>CP032521|4|2|3490185-3490693|CRT
GTTCGCTGCCGCATAGGCAGCTTAGAAA	TCTGACGCTAAAACCGCTGTTGGCCAGATCGC
GTTCGCTGCCGCATAGGCAGCTTAGAAA	AGGGTTACTTTCTTATTGAGGCCCACCCATTT
GTTCGCTGCCGCATAGGCAGCTTAGAAA	ATATCGACGTACATAGCTGCCAGCGGGTAACG
GTTCGCTGCCGCATAGGCAGCTTAGAAA	TATCAAGCCAAGGCCGTTGCTCTGACTATTCG
GTTCGCTGCCGCATAGGCAGCTTAGAAA	GTCAGAACTTCCTGACTGTCCTCGGTCACCCG
GTTCGCTGCCGCATAGGCAGCTTAGAAA	ATGCCGTGGTGTCTGTTGGGCTGGATGGCACTG
GTTCGCTGCCGCATAGGTAGCTTAGAAA	GTCCGCCTGGGTCTGTCGGTGATGTCACTGTA
GTTCGCTGCCGCATAGGCAGCTTAGAAA	ATCATCAAGGCGGGCTGGGTTGATTACCAGCA
GTTCGCTGCCGCATAGGCAGCTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP032521.1\|AYR21726.1\|3478969_3481165_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP032521.1\|AYR21740.1\|3502289_3503288_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
CP032521.1\|AYR21731.1\|3488464_3489484_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
CP032521.1\|AYR21723.1\|3473404_3474595_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225406
CP032521.1\|AYR21728.1\|3482433_3485847_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|274201
CP032521.1\|AYR21737.1\|3498655_3500263_-\|gamma-glutamyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223482
CP032521.1\|AYR21733.1\|3491070_3492249_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|183211
CP032521.1\|AYR22266.1\|3494233_3495634_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
CP032521.1\|AYR21724.1\|3474989_3477626_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
CP032521.1\|AYR21729.1\|3486002_3487292_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|378220
CP032521.1\|AYR21727.1\|3481442_3482423_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|187849
CP032521.1\|AYR21741.1\|3503376_3503988_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
CP032521.1\|AYR21725.1\|3477844_3478957_+\|YncE-family-protein	unknown	unknown	gnl\|CDD\|225926
CP032521.1\|AYR21735.1\|3495586_3496351_-\|glucosamine-6-phosphate-deaminase	unknown	unknown	gnl\|CDD\|238693
CP032521.1\|AYR21736.1\|3496482_3498327_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
CP032521.1\|AYR21730.1\|3487288_3488311_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
CP032521.1\|AYR21732.1\|3489488_3490055_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|378224
CP032521.1\|AYR21738.1\|3500259_3501291_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
CP032521.1\|AYR21734.1\|3492242_3494201_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|182528
CP032521.1\|AYR21739.1\|3501366_3502293_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176117

Protein	Function_ID	Function_description	E-value
CP032521.1\|AYR21726.1\|3478969_3481165_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.18373e-97
CP032521.1\|AYR21740.1\|3502289_3503288_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	0
CP032521.1\|AYR21731.1\|3488464_3489484_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
CP032521.1\|AYR21723.1\|3473404_3474595_-\|cupin-domain-containing-protein	gnl\|CDD\|225406	COG2850, COG2850, Uncharacterized conserved protein [Function unknown].	1.0592e-89
CP032521.1\|AYR21728.1\|3482433_3485847_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
CP032521.1\|AYR21737.1\|3498655_3500263_-\|gamma-glutamyltransferase-family-protein	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
CP032521.1\|AYR21733.1\|3491070_3492249_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	2.35467e-81
CP032521.1\|AYR22266.1\|3494233_3495634_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	7.98494e-70
CP032521.1\|AYR21724.1\|3474989_3477626_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
CP032521.1\|AYR21729.1\|3486002_3487292_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	4.02309e-174
CP032521.1\|AYR21727.1\|3481442_3482423_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187849	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	6.0618e-179
CP032521.1\|AYR21741.1\|3503376_3503988_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	9.67536e-21
CP032521.1\|AYR21725.1\|3477844_3478957_+\|YncE-family-protein	gnl\|CDD\|225926	COG3391, COG3391, Uncharacterized conserved protein [Function unknown].	3.85885e-13
CP032521.1\|AYR21735.1\|3495586_3496351_-\|glucosamine-6-phosphate-deaminase	gnl\|CDD\|238693	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.	1.61875e-110
CP032521.1\|AYR21736.1\|3496482_3498327_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	6.75891e-147
CP032521.1\|AYR21730.1\|3487288_3488311_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	5.9645e-152
CP032521.1\|AYR21732.1\|3489488_3490055_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	5.03775e-92
CP032521.1\|AYR21738.1\|3500259_3501291_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	1.12215e-134
CP032521.1\|AYR21734.1\|3492242_3494201_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
CP032521.1\|AYR21739.1\|3501366_3502293_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176117	cd08426, PBP2_LTTR_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.625e-51

>CP032521.1|AYR21732.1|3489488_3490055_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MSTHYIEIRILPDPEFSAAHLMGALYAKLHRALVIMGTQGLGVSFPGYCLKPRTVGAVMRIHGSLSELQSLEQTQWLRGMRDHIDLKEASPVPQGATYRTVYRRQFKTNVDRLRRRRMKRHGETADQALAAIPECVQQQPNLPFIQMRSQSTAQTFCLFLEMGPEQPLAAAGCFNAYGLSAQASIPWF
>CP032521.1|AYR21731.1|3488464_3489484_+|type-I-F-CRISPR-associated-protein-Csy3
MSLKTASVLAFERKIDPSDALFYAGSWQDQNQQAAWQTLAISQKSVRGTISNRLKTKDQDPAKLDAAIEKPNLQTVDVAALPPDSDTLQVSFTLRILSGAGLPSACNNVEYQAKLEQVVQGYRQNNGFEELARRYAHNLANGRFLWRNRIGAEQVQVVIDLLEQGQASQSWSFDALELSLRQFDKKGQASELEALTQWIAQGLSGVRHVLLRIRAYVRLGEGQEVFPSQELILERGKGDKSRTLYQVNHVAAMHSQKIGNAIRTIDDWYPGAQELGPIAVEPYGSVTTQGKAYRQPKEHLDFYTLLDNWVLKDKVPALEQQHFVMAVLIRGGVFGDAGN
>CP032521.1|AYR21730.1|3487288_3488311_+|type-I-F-CRISPR-associated-protein-Csy2
MTSRIEALLLIPRLRIQNANAISSPLTHGFPAMSAFLGLMWALNRKLEKAGVPIVLEKVGVVCHSHQEQVHTGFVSTFNLTRNPVDKKGDTQAIVEEGRMHLELSLVFQARGQADSAQPLSLASQEQAQRQDWAKQIDECLATMRVAGGSVLGHQGGQRNPTMMLWPSDERERKEVFRMLRRRCLPGFALVSRQDLLQSHWATLKDKEPETSLLDAWLDLSRFNYRSQQMEDGSVKWQHDREGWIVPIPVGYRALGPLQEPGTVLNTRDTSTPFRFVESVYSIGQWLGPHHLNHPDELLWYAQYQEPAGSYLCCNAYQAPQLEPESSLSVLDDSVFDWAS
>CP032521.1|AYR21729.1|3486002_3487292_+|type-I-F-CRISPR-associated-protein-Csy1
MAEDDPKRPDLIAQYQVETWLADAARRVKQIQAVTHSLKPVHPDARGTNLYVDPSALAASPQLSSHVLHDNFASDVVGNAAALDVYKFLRLELDGLSILDRLQADDPAVLAAFCSDLEQAREWRDAFLGLLQDNGKSMSSHVLAKQLYWLVGEDCRDDAQYHLLAPLFPTSLVHAVHAVLQEDRFGEQIKQARQAQRDKVMHEHAVRWYPDLAVRKLGGTKPQNISQLNSERGGVNYLLSSLPPRWTSRSAPSPWGVESIFDSLLMQRREVRQQVGGLRRFLQSQPKPIQETRDRVDDYLARLIDELVSFAAELRVAWPAGWTAQSGCLLAREEQLWLDIERVRQEEVFRTEADQQFRAEWFWMDWPDQIGQRFARWINGRLDGYLPTGDVEYRHWKKELLIDQTYWADQLRTLRRQASLSKTSMKEPV
>CP032521.1|AYR21728.1|3482433_3485847_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLVSQCTKQALAQTRRILDQFAERRGERTWQTAMTQAGLDTLRKLLRQTARKNTAVACHWIRAKDHTELLWVVGNRSQFNEYGAVPTHSTARDVLRQADENNWHTLSLINLLSGLAALLHDLGKSCQSFQDRLRPGSLPEKNRYRHEWVSVRLFQAFVGKDDDQAWLTRLIQAGQKQADAQAFEQIWLGESDHALFKDGLDKNATQHRPFAQDGSGLPPLAQAIAWLVLTHHRLPACPDDLNPDPERSHWHGKKPYSGSALQIERLLDRVDADWNEPWPEHTDTQDLERCQPYWHFPHGLPVRTWLWRQRAARFAKALQQHVLNGKDMLHDPYVMHLSRLSLMLADHYYSGLKKQQYRLQGENNFPLYANTDRATGQLLQPLDEHLLGVEYQAGKLVYSLPSLKGQLPHLIAHRKLKQRSAEARFRWQDKAADLAVAVRQASKDRGAFIVNMASTGCGKTLANARMMNALADPAVGLRCAFAIGLRTLTLQTGRSFQTDLGLDEDALAIQVGGSSQKALFEYYEQLAEHSGSASRQSLIDESSHVIYESNTDHPALKQLAHEPGAQKLLSAPLLVCTIDHLTPATESLRGGRQIAPMLRLLTGDLVLDEPDDFDLADLPALTRLVHWAGLLGARVLLSSATLPPALVQGLYLAYAAGRHWFERNRGQNPALSGPIPCLWIDEFHQTYVPCWQGQEFAAQHQVFIQKRVQALHCQVVRRQAELLALPKNMARLSKQERRKQFAEVARRGMFKLHKAHHCQDPNSGKRMSFGLVRMANINPLFDVAVALHQAGMPSGVQLHLCVYHSQYPQAMRSAIEHMLDQVLNRRQAQAVFDHPVVRQALDQSSAQDHLFVVLGSPVTEVGRDHDYDWALVEPSSMRSIIQLAGRVLRHRSDLQPREPNILLCNANLLHFDAGKGKPAFCRPGFEAGGPYLLESHLLEDVLKPLLDQKHQFPVDARARILPRALLQREPGKSLVDLEHARLETLMLPNDVNSLAPASFSLLNASSFWAEPQAHLLGFVQQMQPFREQTTQQVELVFLPDEDEVLRLHKVQDQERYGGKLYVSVDASLKHAVAVPEGNGTSKWQTESLEELMQRQAQEMDLSLEAFAYKFGTVSVGASENGWFWNEALGFSRKR
>CP032521.1|AYR21727.1|3481442_3482423_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MNPIAASDLKTILHSKRANIYYLEHCRVLLNGGRVEYVTDAGKKALYWNIPIANTTCILLGTGTSLTQAAMRELAKAGVLVGFCGGGGTPLFAGTPMDVEVAWLNPQSEYRPTEYVQAWVQFWFKEDLRLQAALKLQSLRLKFLRSQWGRREIQEMGFQPPLSELDALLEKSASSLQYAPDLAHVLTEEARLSKALFRIAANAVQYGQFSRVKKGQGLDPANRFLDHGNYLAYGLGATACWVLGLPHGLAVLHGKTRRGGLVFDAADLVKDAIILPQAFLSAMRGDQEQEFRRQCIEALTRSESLDFMIDSLKDIATRISAAAVDS
>CP032521.1|AYR21726.1|3478969_3481165_+|TonB-dependent-receptor
MTSLFKPCLGRTLALSLFALHVQAQAQDNVNRAQAQELSTITVNASADASRQGLLPEYAGGQVASGGRVGILGSLDNMDSPFSVNSYTSRYIEQLQASTVADVVRHDPSVRVARGFGNFQESFFIRGFLTASDDIAYNGLFGLLPRQATAAELAERIEVLHGAGGFLYGAAPSGGGIGGTINVLPKRAGENPLTKLGVGYGSGGQSQIKVDMSRRFADNAAGIRVNAIRRSGDTAVDNEHTRLDLYTVGMDWRGERVRLSADLGYQEHKLREVRPNVALKAGLSALPDSPSHKRNFAQPWTYSNEETVFGTLRGEYDLNDSITLWAAYGMKHGKEDNQLATQTVTDAVSGKTTFSRFNNSRRDDVKTGELGLRARFETGPVLHELVAAASLYDHKEKNAWAMGSKQDSNLYDPVNQALSPIAFTGGDLGSPALVGRTKLTSYTLGDLMYLWDDRLEVMLGLRHQIMETRSYDYGTQALQRKDRQQHTSPAAGVVFKLTDEWALYGNYTESLAQGDLAPTRFNNQPVQNAGQRLSAFVAKQKELGVKYDNGSLGGGLTFFTTTKPRGVVNDDLRFVEAGKDRHNGLELSFYGQLTDSLRILGGVTALDTKQKNTGDPLSEGQRVIGVPRWQGSLGLTWDVPQVTGLSLDTQLLATGARYADSANAIRVPGWVRWDLGASYQRKISGVPMTFRASVENVADTTYWASVGGYPNNGYLVLSQPRTFMLSMSAEF
>CP032521.1|AYR21725.1|3477844_3478957_+|YncE-family-protein
MLTRCLALSVLSAALLSAGSLAHAQPSEAVSLPLTPELAQKTSITAEGALRKDLAYGIYQAVYSPFDNSLYVASAERAPSVRGGVIYKLDPITLDVKGTMYTDQSNFGLARNASGDTLYVTNSLAAAVSKVGLKEDGNIERVHFNNKSFDDTKMGPRTIRHDPQQGRIYVGAVGAPAVIWVLDDRTLELIDTIENAGKWVTGLWVDSASHRLYAANGDGEVMVVNTQTNQIEQRWKPAGVKPALLLNFALDSSRNRLYVTETKDQKTVYVLDARDGKLLQTLPVGDAMDILYNADRDELYLTHREQGKVSVLDGASYAVKAQYNLPDNPNSLELGPDSQLYVTVKAPATPQYKASKRESVVRIDLKNIKG
>CP032521.1|AYR21724.1|3474989_3477626_-|DNA-mismatch-repair-protein-MutS
MTSAADLSAHTPMMRQYLQLKAEAGSHLLFYRMGDFYEMFYADAERGARLLNLTLTKRGSSNGEPIPMAGVPFHAMEGYLARLVALGESVAICEQVGDPATSKGPVERKIMRVVTPGTLTDDALLPPKADRLIAACTLIKVQRQEMVGLAWMNLASGEFLVSQCEPDMLDTELNRIGPVELVYPESLRPAPELPQASCHTLPDWHFAQDGSRETLLDHFDLDSLASFGLDDLPAATAAAGALLRYVGSTQSQSLVHITAIRVQHSSDFLVLDAVTRKNLEITETISGETSPTLFSTLDHCQTPMGSRLLRRWLHHPLRLNHAVQQRQDVVSLFFQTQQSASLNAGDPLGVLRHALRRFPDLERIATRISLRSVRPRELASLRDALATLPELRQELEHNFAQSEHLYGHLLNLALDPELASLLQAALAPEPALLVRDGGVIADGYDADLDELRSLASDSGDVLVKIEARERERTGIATLRVEYNRVHGFFIEVSRGQADKVPDDYRRRQTLKNAERFITPELKEWEDKVLSAKDRSLSREKFLFDELLDKLQSYAGPLALCSNALAELDTLSSLALHALDNNWVAPELSEQAGIWIEAGRHPVVEHSIERFTPNHCEMHAQRRMLLITGPNMGGKSTYMRQVALIALLARIGSFVPANTARIGQIDRIFTRIGAADDLAGGRSTFMMEMTEAAAILAGATPYSLVLMDEIGRGTSTYDGLALAWSIAHRLLSHNQALTLFATHYFEITRLPNELPAAANVHLAAAESASGIVFLHEVQEGPASRSYGIQVAQRAGIPSAVIRQASRELSRLEAQNDPSAQLDLFNAGSAPEATATESDPTTEQALELLDQFKQLDVDDLSARDALDLLYRWKKEMKSAG
>CP032521.1|AYR21723.1|3473404_3474595_-|cupin-domain-containing-protein
MTIDQPLTLLGGISAHEFMQTYWQRKPLLIRGAIPNFKHSLSIDNIRELVTREEVESRLIIHDGDDWEMETGPFDELPPASQPNWTALAQSVDLHDDNTAALMRQFRFIGDARLDDAMISIASDGGGVGPHFDSYDVFLLQAHGKRHWRISQQKDLSLVPDLPLKILRNFQVEEEFTLEPGDMLYLPPHVAHDGIAIGDCMTISIGFRSPTQATLARGLMDAASDQLAAASGEGFGLYADPPIPMPESMQQRYTDPDAQASTTPAALPENLIQKSLDALNAIRFDEALASRFLGVWLTELPSNSWFDIAEDPVDLHDPELPEGRLALDRCSRMMYRSDELYINGEVAPCPASPALKLLADQRQLSIPSEHFEALDEDEREMLNAWLDDGWLQFKEN
>CP032521.1|AYR21733.1|3491070_3492249_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKSKAVKRRWAFALVAVLVLGALAAQAGRSSEQFETVAVEQGDIRATVAAVGTLKPSRYVDVGAQVSGQITALPVAPGDQLEQGQLLVEIDPSVQQASVDAGRASLAAFRAQLAEQQAQLVLARQQLTRQRQLERQQASRQEDIQIAQANLATAQARVAHVQAQMEQTQATLKADEARLGYTRIYAPMSGTVIGVQAREGQTLNATYQTPTILRIADLGTMTVWTSVSEADIRRIKPGMAVTFTTLGEQGETQARQWQATVRQVLPAPEGSTQEETAAAAPTATKAIMYTVLFDVDNKDGALMPQMTAQVLFEIDRADQALLVPLAALRPDPQRGPDAFKVPVLEQGKLQEKPVSLGVRNRHQVQVVEGLANEEQVVLAVVTPERGWRWLQW
>CP032521.1|AYR21734.1|3492242_3494201_+|ATP-binding-cassette-domain-containing-protein
MVGAAPSLIELRDICRIYGGPPSTKPAVQVLFDVSLSIEPGEFVAIVGASGSGKSTLMNLLGCLDKPSSGTYLFQGRDVAQLSADELAALRRETFGFVFQGYHLIPTETASENVQMPAIYAGLDEDARAARAAELLSSLGLADKLDNRPNQLSGGQQQRVSIARALMNGGRVILADEPTGALDSRSGAEVMALLRELSDSGHTIILITHDHQVAAMADRVIEIRDGCILSDSRPDAAQETRAKPPLTESAHRRSPWLSEIKDAARSALRSMFINRHRTALTLLGVIIGVASVIVMLAVGEGARQRVMDQMGTMGTTIMYLSSASPPNGLPKGQLTEDDLEAVGELPLIRRVMPVIGDPITVRRGRVDRQVYVFAANETMPDIHRWQLAQGRYYTDAEDRDLAPLVVLGHRAAKHFFPNRDVPLGQQLLIGNSPFEVIGVMQERGADSGAQDYDDMVFVPYHAARARVYQAQTQPDYVVIDARDSATVLEAEQDMRQLLTQRHGGREDFSIGNAAARLQAEASTRQAMSMMLGLIAAVSLVVGGIGVMNVMLMTVRERTREIGIRMATGARQSDIMRQFLTEAVLLTITGGCLGVLVGAVVGIGLIFGGVDVVFSLRAALGAFGCAVVTGMVFGYMPARTAAALDPVQALAGE
>CP032521.1|AYR22266.1|3494233_3495634_+|efflux-transporter-outer-membrane-subunit
MSTLLLQACGSLSSDLDKTAPTLPQAYQQQGKVVSDPVLAQVEPQWWRAYNSPALNSLMQEALKDVAVLRQAQARILQAQAQARIAGASLLPELQGNLSVQRDAPFSSSHGDSRSQYVAGVFMSYELDVWGRHRAQADSAVFLAQAANYELDVLRVSVQAQVVHLSLQALGDKQRVAIARQNLAVAQRLLSLLEARLQAGAASPLELAQQRQLLASQQRKLFVLEEQAMRTRVELATLLGRTEIMPEPQEDIASLQVPELEAGLPSQLLSQRPDIARIEAQLSAAHADVRVARAALYPSLTLGVRAGASGNHWEESLRHPVYSLISGLVAPIFNAGRLEAGKDLSDARLQEWLAQYRQTIVQAYMDVEGVLAQLHSLDAQAQIMELEWEQARLAFQLAEARYRSGSETLLSLLDAQRTLYAAQDVRVSLMQSRLQSRAALFRALGGGWQAGSGGLADQGTVAQAGV
>CP032521.1|AYR21735.1|3495586_3496351_-|glucosamine-6-phosphate-deaminase
MFLVFPDSAAIATHLSARLQDIIRQDPQATLGLATGGTMEPIYARFVQDVRDHALDVSKINSFNLDEYVGLSAEHEQSYACYMHQHLFSQLPFDAARLHLPNGLTTELEQHCQDYSAAIAASGGVALQLLGVGTNGHIGFNEPGTPFDSRTHVVALSERTRIDNSRFFDSMDEVPASAITMGIADILSAREIALVVTGEHKARTMLNYQEGGITPELPFTALKQHANTHILLDEAAASLLDPSLCHRPLISQAA
>CP032521.1|AYR21736.1|3496482_3498327_-|ABC-transporter-ATP-binding-protein
MLSFFERRLNPYPEQHVAPPPTGFFPFIWACTKNSRGWISLMTVTSIGLSAYEAMLFALLSYIVDWLPSIEPAQFWSQQGGTLLTIAAVLLSSVALISLHTLVMHQVLAINFPMRLRWLFHKLMLNQSMSFYADEFAGRITTKIMQTALAVRETLFMAVEVVVGMSAYLIGILILAGSFDRLLILPFLFWLLGYALACVYFVPRLGKVGAEQADARALMTGRITDAYTNINTVKLFAHTRREADHAKNAMRRFQETGHAQMRLISLFEVTNHVLATVLLISSAGLALYLWSIDQSTAGVVAAVIAMALRLSGHSHWLMWELTNLFENVGTIQDGINTLTQKPTVVDAPDAKPLQIEQGRIEFQDVSFAYRDKSRQVIDKLNLVIKPGERVGLIGRSGAGKSTLVNLLLRFHDVDSGTIRIDGQDIAHVTQDSLRAAIGMVTQDTSLLHRSMRDNILYGRPDANDELLHMAVERAAAADFIPQLHDRQGREGLDAHVGERGVKLSGGQRQRVAIARVMLKDAPILLLDEATSALDSEVEAAIQESLNTLMQGKTVIAIAHRLSTIAALDRLIVLDQGRIIEQGSHQQLLEKGGLYARLWARQSGGFLGETGKQDV
>CP032521.1|AYR21737.1|3498655_3500263_-|gamma-glutamyltransferase-family-protein
MNKTDTCMDWNNPYPSARSAVLGQNMVSTSHPLAAQAGLRMLQAGGNAVDAALAAAIALTVVEPTGCGIGSDAFAIVWDGKALHGLNASGRSPRGWSPDRFKGLATVPDKGWESVSVPGAVSAWAELSSKLGRLSLEQVAAPAIHYAREGFPVSPVIARLWELGRQRLGDQPGFADAFLRDGKAPVAGQWYQNQDQANTLERIAATQGQDFYTGELAKRIAAFSRLHGGAMDEQDLAAHRANWCGTISHPFAQSVIHEIPPNGQGLAALMALGIMEQAGVGQQPLDHIDTVHVSIEAMKLAFADLYEHHADLEHMIHQPEHLLDPAYLRERAALIQMDKAGDPKHGLPGPSGTVYVTAADSSGMMVSLIQSNYMGFGSGVVVPGTGISMQNRGHGFTLRPGHVNEVAGGKRPSHTIIPAFAMNADGTPQMSFGVMGGPFQSQGHMQMALRVLLYGQNPQAAADAPRWRVTGGRGVAVEPSFDPALVQALRERGHEVVVEPGSGVFAFGGAQLILRQGNHYVGGSDPRKDGQVVAY
>CP032521.1|AYR21738.1|3500259_3501291_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MTTPSNTASTAHRPSIRRPWRRLAQTLLGAILAVSSIPAAHASDWPDRPIRLVVPFPTGGATDVISRLIAESAAKAMHTNIIVDNRTGAGGTIGSAEVARSKPDGYTLLFTTSSTHAIAPHLYKSLPYDADKDFTPIAHLGDAASVLLVNPSVPVQTLPELIEYTRAHPDELNYASSGNGTIVHLGTEAFLNQADIVMSHVPYRGTGQAINDMLGGSIHVLLDAIPTGMPYVNSGQLRALAVTGPQRSPLAPDLPTFQESGLPGYESVTWFGLYAPAGLPDEIRDKAYEAFTHATQDPNVRSRLQALGVDLPRSTSQEAFVSLVREDSARWQGLIQLTGIQIQ
>CP032521.1|AYR21739.1|3501366_3502293_-|LysR-family-transcriptional-regulator
MNPRHLQETALRYFQEVARCGSISQAASNLHVATSAISRQISGLEENLGMALFERHARGMNLTAAGELLLAHARRSAMDAERTLHDIAALQGLQTGLIRIASSEGLAAQLLPQCITQFREKHPGIRFLLDVLPPQRISMLLLSGQIDIGIKFTQTAEKDIKTLFRRDAPVMALAVPGHPVTRTERISLKSLLAHPLALPGPDTTVRQMMDVACSAQNLSLDPVLSSNHMQSLHQFALSGAGVTVSALLSARHLIEQGLLQASFIHERGLLNRQIEVQALAGRRLPAIVHRFLDELLPQLEVNPQTLPK
>CP032521.1|AYR21740.1|3502289_3503288_-|LLM-class-flavin-dependent-oxidoreductase
MKPSYPLSVLDLSPIVQGSTPAQSFRCSADIARHAEQWGYHRYWLAEHHGMPGIASAATSVLIGHIAGQTSRIRVGAGGIMLPNHSPLVIAEQFGTLASLYPGRIDLGLGRAPGSDPETARALRRNLNSDPDQFPRDVLELMDYMSDEPRNRIMAVPGRGLNVPVWILGSSLFGAQLAAALGLPYAFASHFAPAQLMDAIEVYRRQFQPSVHLEKPYVMLGYNVFAADTQDEAKLLASSWQQSFVNLRSGRPGQLPPPVRDYYEQCSPPAQHLLDSLLSCTAIGNPEQVLEQMKGFIQLTGANELMLNANIFDHNKRLRSYEIAAQLRGSLI
>CP032521.1|AYR21741.1|3503376_3503988_+|class-I-SAM-dependent-methyltransferase
MKETSRRTVNHYQDHARAFRDGTWDHDVSQNRDALLAAIGLPGPVDILDLGCGPGRDLVAFQAMGHRPVGLDGCAAFVEMARQQTGLPVLQQDFLDLNLPAAAFDGVFANAVLFHIPSAELPAVLTALRHSLRPGGVLFSSNPRGQGQEGWNGQRYGCYYSWEQWSERLEQAGFEYIKHFYRPTDRPAQEQHWLASLWRVPAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP032521_1	1.2\|1655999\|23\|CP032521\|CRISPRCasFinder	1655999-1656021	23	CP032521.1	1656039-1656061	0	1.0

1. spacer 1.2|1655999|23|CP032521|CRISPRCasFinder matches to position: 1656039-1656061, mismatch: 0, identity: 1.0

ctaagtctctaagtctctaagtc	CRISPR spacer
ctaagtctctaagtctctaagtc	Protospacer
***********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP032521_4	4.5\|3490453\|30\|CP032521\|CRISPRCasFinder	3490453-3490482	30	NZ_KY000060	Agrobacterium tumefaciens strain CFBP2407 plasmid pTi_CFBP2407, complete sequence	106867-106896	4	0.867
CP032521_4	4.13\|3490453\|32\|CP032521\|PILER-CR,CRT	3490453-3490484	32	NZ_KY000060	Agrobacterium tumefaciens strain CFBP2407 plasmid pTi_CFBP2407, complete sequence	106865-106896	5	0.844
CP032521_4	4.8\|3490634\|30\|CP032521\|CRISPRCasFinder	3490634-3490663	30	MN585974	Mycobacterium phage DreamTeam1, complete genome	24899-24928	6	0.8
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NC_016644	Pseudomonas sp. MC1 plasmid KOPRI126573, complete sequence	64644-64673	7	0.767
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NC_016644	Pseudomonas sp. MC1 plasmid KOPRI126573, complete sequence	55964-55993	7	0.767
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NC_007926	Pseudomonas putida plasmid NAH7, complete sequence	64997-65026	7	0.767
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NC_007926	Pseudomonas putida plasmid NAH7, complete sequence	56319-56348	7	0.767
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	CP027480	Pseudomonas koreensis strain P19E3 plasmid p3, complete sequence	279980-280009	7	0.767
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NZ_CP027175	Pseudomonas aeruginosa strain AR_0230 plasmid unnamed1	28348-28377	7	0.767
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NC_022739	Pseudomonas sp. VLB120 plasmid pSTY, complete sequence	255567-255596	7	0.767
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NZ_MH061177	Pseudomonas fluorescens strain P69 plasmid pG69, complete sequence	119417-119446	7	0.767
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NC_021250	Pseudomonas migulae strain D2RT plasmid pD2RT, complete sequence	76393-76422	7	0.767
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NZ_CP042181	Pseudomonas sp. KBS0802 plasmid unnamed, complete sequence	20760-20789	7	0.767
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	361396-361425	7	0.767
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NC_008275	Pseudomonas putida MT53 plasmid pWW53, complete sequence	40852-40881	7	0.767
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NC_003350	Pseudomonas putida plasmid pWW0, complete sequence	22489-22518	7	0.767
CP032521_4	4.8\|3490634\|30\|CP032521\|CRISPRCasFinder	3490634-3490663	30	NC_014723	Paraburkholderia rhizoxinica HKI 454 plasmid pBRH02, complete sequence	18164-18193	7	0.767
CP032521_4	4.8\|3490634\|30\|CP032521\|CRISPRCasFinder	3490634-3490663	30	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	25033-25062	7	0.767
CP032521_4	4.8\|3490634\|30\|CP032521\|CRISPRCasFinder	3490634-3490663	30	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	168702-168731	7	0.767
CP032521_4	4.8\|3490634\|30\|CP032521\|CRISPRCasFinder	3490634-3490663	30	MK494108	Mycobacterium phage Charm, complete genome	25016-25045	7	0.767
CP032521_3	3.2\|3470828\|32\|CP032521\|PILER-CR,CRISPRCasFinder,CRT	3470828-3470859	32	NZ_CP017104	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence	456380-456411	8	0.75
CP032521_3	3.3\|3470888\|32\|CP032521\|PILER-CR,CRISPRCasFinder,CRT	3470888-3470919	32	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	252279-252310	8	0.75
CP032521_3	3.3\|3470888\|32\|CP032521\|PILER-CR,CRISPRCasFinder,CRT	3470888-3470919	32	NZ_CP029833	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence	143771-143802	8	0.75
CP032521_3	3.9\|3471248\|32\|CP032521\|PILER-CR,CRISPRCasFinder,CRT	3471248-3471279	32	KY783914	Mycobacterium phage GardenSalsa, complete genome	70297-70328	8	0.75
CP032521_3	3.9\|3471248\|32\|CP032521\|PILER-CR,CRISPRCasFinder,CRT	3471248-3471279	32	KY223999	Mycobacterium phage MrMagoo, complete genome	70298-70329	8	0.75
CP032521_3	3.9\|3471248\|32\|CP032521\|PILER-CR,CRISPRCasFinder,CRT	3471248-3471279	32	MT657341	Mycobacterium phage Estes, complete genome	70124-70155	8	0.75
CP032521_4	4.8\|3490634\|30\|CP032521\|CRISPRCasFinder	3490634-3490663	30	NZ_CP009155	Burkholderia pseudomallei strain TSV202 plasmid 1, complete sequence	169387-169416	8	0.733
CP032521_4	4.16\|3490634\|32\|CP032521\|PILER-CR,CRT	3490634-3490665	32	MN585974	Mycobacterium phage DreamTeam1, complete genome	24897-24928	8	0.75
CP032521_3	3.2\|3470828\|32\|CP032521\|PILER-CR,CRISPRCasFinder,CRT	3470828-3470859	32	NZ_LR134463	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 21, complete sequence	137018-137049	9	0.719
CP032521_3	3.4\|3470948\|32\|CP032521\|PILER-CR,CRISPRCasFinder,CRT	3470948-3470979	32	NZ_CP010600	Phaeobacter inhibens strain P83 plasmid pP83_a, complete sequence	187107-187138	9	0.719
CP032521_3	3.4\|3470948\|32\|CP032521\|PILER-CR,CRISPRCasFinder,CRT	3470948-3470979	32	NZ_CP010706	Phaeobacter inhibens strain P66 plasmid pP66_a, complete sequence	187107-187138	9	0.719
CP032521_3	3.6\|3471068\|32\|CP032521\|PILER-CR,CRISPRCasFinder,CRT	3471068-3471099	32	NZ_CP020556	Streptomyces sp. Sge12 plasmid pSGE, complete sequence	56607-56638	9	0.719
CP032521_3	3.9\|3471248\|32\|CP032521\|PILER-CR,CRISPRCasFinder,CRT	3471248-3471279	32	MT658802	Mycobacterium phage Aziz, complete genome	69955-69986	9	0.719
CP032521_3	3.9\|3471248\|32\|CP032521\|PILER-CR,CRISPRCasFinder,CRT	3471248-3471279	32	MF319184	Mycobacterium phage GenevaB15, complete genome	69955-69986	9	0.719
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NZ_CP045357	Vibrio sp. THAF64 plasmid pTHAF64_b, complete sequence	238645-238674	9	0.7
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NZ_CP046164	Vibrio sp. THAF191c plasmid pTHAF191c_c, complete sequence	341513-341542	9	0.7
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NZ_CP020455	Vibrio coralliilyticus strain SNUTY-1 plasmid pSNUTY1, complete sequence	143874-143903	9	0.7
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NZ_CP048695	Vibrio coralliilyticus OCN008 plasmid unnamed1, complete sequence	77341-77370	9	0.7
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NZ_CP046067	Vibrio sp. THAF191d plasmid pTHAF191d_c, complete sequence	90012-90041	9	0.7
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NZ_CP031474	Vibrio coralliilyticus strain RE22 plasmid p337, complete sequence	200709-200738	9	0.7
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NZ_CP009266	Vibrio coralliilyticus strain OCN014 plasmid pOCN014, complete sequence	15803-15832	9	0.7
CP032521_4	4.7\|3490574\|30\|CP032521\|CRISPRCasFinder	3490574-3490603	30	NZ_CP009620	Vibrio coralliilyticus strain RE98 plasmid p319, complete sequence	80090-80119	9	0.7
CP032521_4	4.16\|3490634\|32\|CP032521\|PILER-CR,CRT	3490634-3490665	32	NC_014723	Paraburkholderia rhizoxinica HKI 454 plasmid pBRH02, complete sequence	18164-18195	9	0.719
CP032521_4	4.16\|3490634\|32\|CP032521\|PILER-CR,CRT	3490634-3490665	32	NZ_CP009155	Burkholderia pseudomallei strain TSV202 plasmid 1, complete sequence	169385-169416	9	0.719
CP032521_4	4.16\|3490634\|32\|CP032521\|PILER-CR,CRT	3490634-3490665	32	MK494108	Mycobacterium phage Charm, complete genome	25014-25045	9	0.719
CP032521_4	4.15\|3490574\|32\|CP032521\|PILER-CR,CRT	3490574-3490605	32	NZ_CP046164	Vibrio sp. THAF191c plasmid pTHAF191c_c, complete sequence	341513-341544	10	0.688
CP032521_4	4.15\|3490574\|32\|CP032521\|PILER-CR,CRT	3490574-3490605	32	NZ_CP020455	Vibrio coralliilyticus strain SNUTY-1 plasmid pSNUTY1, complete sequence	143874-143905	10	0.688
CP032521_4	4.15\|3490574\|32\|CP032521\|PILER-CR,CRT	3490574-3490605	32	NZ_CP048695	Vibrio coralliilyticus OCN008 plasmid unnamed1, complete sequence	77341-77372	10	0.688
CP032521_4	4.15\|3490574\|32\|CP032521\|PILER-CR,CRT	3490574-3490605	32	NZ_CP046067	Vibrio sp. THAF191d plasmid pTHAF191d_c, complete sequence	90012-90043	10	0.688
CP032521_4	4.15\|3490574\|32\|CP032521\|PILER-CR,CRT	3490574-3490605	32	NZ_CP031474	Vibrio coralliilyticus strain RE22 plasmid p337, complete sequence	200709-200740	10	0.688
CP032521_4	4.15\|3490574\|32\|CP032521\|PILER-CR,CRT	3490574-3490605	32	NZ_CP009266	Vibrio coralliilyticus strain OCN014 plasmid pOCN014, complete sequence	15803-15834	10	0.688
CP032521_4	4.15\|3490574\|32\|CP032521\|PILER-CR,CRT	3490574-3490605	32	NZ_CP009620	Vibrio coralliilyticus strain RE98 plasmid p319, complete sequence	80090-80121	10	0.688
CP032521_4	4.15\|3490574\|32\|CP032521\|PILER-CR,CRT	3490574-3490605	32	NZ_CP045357	Vibrio sp. THAF64 plasmid pTHAF64_b, complete sequence	238643-238674	10	0.688

1. spacer 4.5|3490453|30|CP032521|CRISPRCasFinder matches to NZ_KY000060 (Agrobacterium tumefaciens strain CFBP2407 plasmid pTi_CFBP2407, complete sequence) position: , mismatch: 4, identity: 0.867

gtcagaacttcctgactgtcctcggtcacc	CRISPR spacer
atcagaacttcctgactgtcctcggctacg	Protospacer
.************************..**

2. spacer 4.13|3490453|32|CP032521|PILER-CR,CRT matches to NZ_KY000060 (Agrobacterium tumefaciens strain CFBP2407 plasmid pTi_CFBP2407, complete sequence) position: , mismatch: 5, identity: 0.844

gtcagaacttcctgactgtcctcggtcacccg	CRISPR spacer
atcagaacttcctgactgtcctcggctacgag	Protospacer
.************************..**  *

3. spacer 4.8|3490634|30|CP032521|CRISPRCasFinder matches to MN585974 (Mycobacterium phage DreamTeam1, complete genome) position: , mismatch: 6, identity: 0.8

atcatcaaggcgggctgggttgattaccag	CRISPR spacer
atcatcaaagcgggctgggttgagatggag	Protospacer
********.**************     **

4. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NC_016644 (Pseudomonas sp. MC1 plasmid KOPRI126573, complete sequence) position: , mismatch: 7, identity: 0.767

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
ctcgtgccgggtctgtcggtgatgccactt	Protospacer
 **   *.****************.****

5. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NC_016644 (Pseudomonas sp. MC1 plasmid KOPRI126573, complete sequence) position: , mismatch: 7, identity: 0.767

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
ctcatgccgggtctgtcggtgatgccactt	Protospacer
 **   *.****************.****

6. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NC_007926 (Pseudomonas putida plasmid NAH7, complete sequence) position: , mismatch: 7, identity: 0.767

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
ctcgtgccgggtctgtcggtgatgccactt	Protospacer
 **   *.****************.****

7. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NC_007926 (Pseudomonas putida plasmid NAH7, complete sequence) position: , mismatch: 7, identity: 0.767

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
ctcatgccgggtctgtcggtgatgccactt	Protospacer
 **   *.****************.****

8. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to CP027480 (Pseudomonas koreensis strain P19E3 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
ctcgtgccgggtctgtcggtgatgccactt	Protospacer
 **   *.****************.****

9. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NZ_CP027175 (Pseudomonas aeruginosa strain AR_0230 plasmid unnamed1) position: , mismatch: 7, identity: 0.767

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
ctcgtgccgggtctgtcggtgatgccactt	Protospacer
 **   *.****************.****

10. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NC_022739 (Pseudomonas sp. VLB120 plasmid pSTY, complete sequence) position: , mismatch: 7, identity: 0.767

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
ctcgtgccgggtctgtcggtgatgccactt	Protospacer
 **   *.****************.****

11. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NZ_MH061177 (Pseudomonas fluorescens strain P69 plasmid pG69, complete sequence) position: , mismatch: 7, identity: 0.767

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
ctcgtgccgggtctgtcggtgatgccactt	Protospacer
 **   *.****************.****

12. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NC_021250 (Pseudomonas migulae strain D2RT plasmid pD2RT, complete sequence) position: , mismatch: 7, identity: 0.767

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
ctcgtgccgggtctgtcggtgatgccactt	Protospacer
 **   *.****************.****

13. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NZ_CP042181 (Pseudomonas sp. KBS0802 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
ctcgtgccgggtctgtcggtgatgccactt	Protospacer
 **   *.****************.****

14. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
ctcgtgccgggtctgtcggtgatgccactt	Protospacer
 **   *.****************.****

15. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NC_008275 (Pseudomonas putida MT53 plasmid pWW53, complete sequence) position: , mismatch: 7, identity: 0.767

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
ctcgtgccgggtctgtcggtgatgccactt	Protospacer
 **   *.****************.****

16. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NC_003350 (Pseudomonas putida plasmid pWW0, complete sequence) position: , mismatch: 7, identity: 0.767

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
ctcgtgccgggtctgtcggtgatgccactt	Protospacer
 **   *.****************.****

17. spacer 4.8|3490634|30|CP032521|CRISPRCasFinder matches to NC_014723 (Paraburkholderia rhizoxinica HKI 454 plasmid pBRH02, complete sequence) position: , mismatch: 7, identity: 0.767

atcatcaaggcgggctgggttgattaccag	CRISPR spacer
ttcatcaaggcgggctgcgttgatcgtgat	Protospacer
 **************** ******... *

18. spacer 4.8|3490634|30|CP032521|CRISPRCasFinder matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 7, identity: 0.767

atcatcaaggcgggctgggttgattaccag	CRISPR spacer
gacatcaaggcgggctgagttgatggcccc	Protospacer
. ***************.****** .**

19. spacer 4.8|3490634|30|CP032521|CRISPRCasFinder matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 7, identity: 0.767

atcatcaaggcgggctgggttgattaccag	CRISPR spacer
gacatcaaggcgggctgagttgatggcccc	Protospacer
. ***************.****** .**

20. spacer 4.8|3490634|30|CP032521|CRISPRCasFinder matches to MK494108 (Mycobacterium phage Charm, complete genome) position: , mismatch: 7, identity: 0.767

atcatcaaggcgggctgggttgattaccag	CRISPR spacer
atcatcaaagcgggctgggtggagatggag	Protospacer
********.*********** **     **

21. spacer 3.2|3470828|32|CP032521|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017104 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence) position: , mismatch: 8, identity: 0.75

tagccgctccgtcggtgcgttcggtccctcat	CRISPR spacer
cagcttatccgtcgatgcgatcggtccctccc	Protospacer
.***.  *******.**** ********** .

22. spacer 3.3|3470888|32|CP032521|PILER-CR,CRISPRCasFinder,CRT matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 8, identity: 0.75

agagacttgatcgtatgctgcaggcacaaacc	CRISPR spacer
agcgacttgatcgaatgctgcaggtgcttggc	Protospacer
** ********** **********..*  . *

23. spacer 3.3|3470888|32|CP032521|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029833 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

agagacttgatcgtatgctgcaggcacaaacc	CRISPR spacer
agcgacttgatcgaatgctgcaggtgcttggc	Protospacer
** ********** **********..*  . *

24. spacer 3.9|3471248|32|CP032521|PILER-CR,CRISPRCasFinder,CRT matches to KY783914 (Mycobacterium phage GardenSalsa, complete genome) position: , mismatch: 8, identity: 0.75

aaagaggaggccgctgcgttccgtgagacatt	CRISPR spacer
cctgaggaggccgctgcgatccgtgaggggta	Protospacer
   *************** ********. .*

25. spacer 3.9|3471248|32|CP032521|PILER-CR,CRISPRCasFinder,CRT matches to KY223999 (Mycobacterium phage MrMagoo, complete genome) position: , mismatch: 8, identity: 0.75

aaagaggaggccgctgcgttccgtgagacatt	CRISPR spacer
cctgaggaggccgctgcgatccgtgaggggta	Protospacer
   *************** ********. .*

26. spacer 3.9|3471248|32|CP032521|PILER-CR,CRISPRCasFinder,CRT matches to MT657341 (Mycobacterium phage Estes, complete genome) position: , mismatch: 8, identity: 0.75

aaagaggaggccgctgcgttccgtgagacatt	CRISPR spacer
cccgaggaggccgctgcgatccgcgagggata	Protospacer
   *************** ****.***. **

27. spacer 4.8|3490634|30|CP032521|CRISPRCasFinder matches to NZ_CP009155 (Burkholderia pseudomallei strain TSV202 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.733

atcatcaaggcgggctgggttgattaccag	CRISPR spacer
ttcatcaaggcgggctgtgtcgatcgtgat	Protospacer
 **************** **.***... *

28. spacer 4.16|3490634|32|CP032521|PILER-CR,CRT matches to MN585974 (Mycobacterium phage DreamTeam1, complete genome) position: , mismatch: 8, identity: 0.75

atcatcaaggcgggctgggttgattaccagca	CRISPR spacer
atcatcaaagcgggctgggttgagatggagac	Protospacer
********.**************     **

29. spacer 3.2|3470828|32|CP032521|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134463 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 21, complete sequence) position: , mismatch: 9, identity: 0.719

tagccgctccgtcggtgcgttcggt-----ccctcat	CRISPR spacer
gtgccgggccgtcggtgcgttcggtgggcgcc-----	Protospacer
  ****  *****************     **

30. spacer 3.4|3470948|32|CP032521|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010600 (Phaeobacter inhibens strain P83 plasmid pP83_a, complete sequence) position: , mismatch: 9, identity: 0.719

ggggttgatgtcagcagattgacgcaatcaaa	CRISPR spacer
tgcggcatcgtcagcagattgacgaactcaaa	Protospacer
 * * .. .*************** * *****

31. spacer 3.4|3470948|32|CP032521|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010706 (Phaeobacter inhibens strain P66 plasmid pP66_a, complete sequence) position: , mismatch: 9, identity: 0.719

ggggttgatgtcagcagattgacgcaatcaaa	CRISPR spacer
tgcggcatcgtcagcagattgacgaactcaaa	Protospacer
 * * .. .*************** * *****

32. spacer 3.6|3471068|32|CP032521|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020556 (Streptomyces sp. Sge12 plasmid pSGE, complete sequence) position: , mismatch: 9, identity: 0.719

gttagcaaggactggggcgatcgctcgtctgt	CRISPR spacer
tgatgcctggactgcggcgatcgcccgtctgc	Protospacer
    **  ****** *********.******.

33. spacer 3.9|3471248|32|CP032521|PILER-CR,CRISPRCasFinder,CRT matches to MT658802 (Mycobacterium phage Aziz, complete genome) position: , mismatch: 9, identity: 0.719

aaagaggaggccgctgcgttccgtgagacatt	CRISPR spacer
cccgaggaggctgctgcgatccgtgaggggta	Protospacer
   ********.****** ********. .*

34. spacer 3.9|3471248|32|CP032521|PILER-CR,CRISPRCasFinder,CRT matches to MF319184 (Mycobacterium phage GenevaB15, complete genome) position: , mismatch: 9, identity: 0.719

aaagaggaggccgctgcgttccgtgagacatt	CRISPR spacer
cccgaggaggctgctgcgatccgtgaggggta	Protospacer
   ********.****** ********. .*

35. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NZ_CP045357 (Vibrio sp. THAF64 plasmid pTHAF64_b, complete sequence) position: , mismatch: 9, identity: 0.7

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
tgtgaaatgggcctttcggtgatgtcactg	Protospacer
  . .  ****.** ***************

36. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NZ_CP046164 (Vibrio sp. THAF191c plasmid pTHAF191c_c, complete sequence) position: , mismatch: 9, identity: 0.7

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
tgtgaaatgggcctttcggtgatgtcactg	Protospacer
  . .  ****.** ***************

37. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NZ_CP020455 (Vibrio coralliilyticus strain SNUTY-1 plasmid pSNUTY1, complete sequence) position: , mismatch: 9, identity: 0.7

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
tgtgaaatgggcctttcggtgatgtcactg	Protospacer
  . .  ****.** ***************

38. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NZ_CP048695 (Vibrio coralliilyticus OCN008 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
tgtgaaatgggcctttcggtgatgtcactg	Protospacer
  . .  ****.** ***************

39. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NZ_CP046067 (Vibrio sp. THAF191d plasmid pTHAF191d_c, complete sequence) position: , mismatch: 9, identity: 0.7

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
tgtgaaatgggcctttcggtgatgtcactg	Protospacer
  . .  ****.** ***************

40. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NZ_CP031474 (Vibrio coralliilyticus strain RE22 plasmid p337, complete sequence) position: , mismatch: 9, identity: 0.7

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
tgtgaaatgggcctttcggtgatgtcactg	Protospacer
  . .  ****.** ***************

41. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NZ_CP009266 (Vibrio coralliilyticus strain OCN014 plasmid pOCN014, complete sequence) position: , mismatch: 9, identity: 0.7

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
tgtgaaatgggcctttcggtgatgtcactg	Protospacer
  . .  ****.** ***************

42. spacer 4.7|3490574|30|CP032521|CRISPRCasFinder matches to NZ_CP009620 (Vibrio coralliilyticus strain RE98 plasmid p319, complete sequence) position: , mismatch: 9, identity: 0.7

gtccgcctgggtctgtcggtgatgtcactg	CRISPR spacer
tgtgaaatgggcctttcggtgatgtcactg	Protospacer
  . .  ****.** ***************

43. spacer 4.16|3490634|32|CP032521|PILER-CR,CRT matches to NC_014723 (Paraburkholderia rhizoxinica HKI 454 plasmid pBRH02, complete sequence) position: , mismatch: 9, identity: 0.719

atcatcaaggcgggctgggttgattaccagca	CRISPR spacer
ttcatcaaggcgggctgcgttgatcgtgattt	Protospacer
 **************** ******... * .

44. spacer 4.16|3490634|32|CP032521|PILER-CR,CRT matches to NZ_CP009155 (Burkholderia pseudomallei strain TSV202 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

atcatcaaggcgggctgggttgattaccagca	CRISPR spacer
ttcatcaaggcgggctgtgtcgatcgtgatct	Protospacer
 **************** **.***... * *

45. spacer 4.16|3490634|32|CP032521|PILER-CR,CRT matches to MK494108 (Mycobacterium phage Charm, complete genome) position: , mismatch: 9, identity: 0.719

atcatcaaggcgggctgggttgattaccagca	CRISPR spacer
atcatcaaagcgggctgggtggagatggagac	Protospacer
********.*********** **     **

46. spacer 4.15|3490574|32|CP032521|PILER-CR,CRT matches to NZ_CP046164 (Vibrio sp. THAF191c plasmid pTHAF191c_c, complete sequence) position: , mismatch: 10, identity: 0.688

gtccgcctgggtctgtcggtgatgtcactgta	CRISPR spacer
tgtgaaatgggcctttcggtgatgtcactgtc	Protospacer
  . .  ****.** ****************

47. spacer 4.15|3490574|32|CP032521|PILER-CR,CRT matches to NZ_CP020455 (Vibrio coralliilyticus strain SNUTY-1 plasmid pSNUTY1, complete sequence) position: , mismatch: 10, identity: 0.688

gtccgcctgggtctgtcggtgatgtcactgta	CRISPR spacer
tgtgaaatgggcctttcggtgatgtcactgtc	Protospacer
  . .  ****.** ****************

48. spacer 4.15|3490574|32|CP032521|PILER-CR,CRT matches to NZ_CP048695 (Vibrio coralliilyticus OCN008 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gtccgcctgggtctgtcggtgatgtcactgta	CRISPR spacer
tgtgaaatgggcctttcggtgatgtcactgtc	Protospacer
  . .  ****.** ****************

49. spacer 4.15|3490574|32|CP032521|PILER-CR,CRT matches to NZ_CP046067 (Vibrio sp. THAF191d plasmid pTHAF191d_c, complete sequence) position: , mismatch: 10, identity: 0.688

gtccgcctgggtctgtcggtgatgtcactgta	CRISPR spacer
tgtgaaatgggcctttcggtgatgtcactgtc	Protospacer
  . .  ****.** ****************

50. spacer 4.15|3490574|32|CP032521|PILER-CR,CRT matches to NZ_CP031474 (Vibrio coralliilyticus strain RE22 plasmid p337, complete sequence) position: , mismatch: 10, identity: 0.688

gtccgcctgggtctgtcggtgatgtcactgta	CRISPR spacer
tgtgaaatgggcctttcggtgatgtcactgtc	Protospacer
  . .  ****.** ****************

51. spacer 4.15|3490574|32|CP032521|PILER-CR,CRT matches to NZ_CP009266 (Vibrio coralliilyticus strain OCN014 plasmid pOCN014, complete sequence) position: , mismatch: 10, identity: 0.688

gtccgcctgggtctgtcggtgatgtcactgta	CRISPR spacer
tgtgaaatgggcctttcggtgatgtcactgtc	Protospacer
  . .  ****.** ****************

52. spacer 4.15|3490574|32|CP032521|PILER-CR,CRT matches to NZ_CP009620 (Vibrio coralliilyticus strain RE98 plasmid p319, complete sequence) position: , mismatch: 10, identity: 0.688

gtccgcctgggtctgtcggtgatgtcactgta	CRISPR spacer
tgtgaaatgggcctttcggtgatgtcactgtc	Protospacer
  . .  ****.** ****************

53. spacer 4.15|3490574|32|CP032521|PILER-CR,CRT matches to NZ_CP045357 (Vibrio sp. THAF64 plasmid pTHAF64_b, complete sequence) position: , mismatch: 10, identity: 0.688

gtccgcctgggtctgtcggtgatgtcactgta	CRISPR spacer
tgtgaaatgggcctttcggtgatgtcactgtc	Protospacer
  . .  ****.** ****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

89591 : 109823

Pseudomonas_phage(41.67%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYR18967.1\|89591_89912_-	hypothetical protein	A0A0R6PI25	Moraxella_phage	5.7e-08	57.8
AYR22027.1\|90031_90298_+	hypothetical protein	NA	NA	NA	NA
AYR18968.1\|90334_91033_-	S24 family peptidase	A0A1I9KG86	Aeromonas_phage	1.2e-29	45.3
AYR18969.1\|91106_91298_+	hypothetical protein	NA	NA	NA	NA
AYR18970.1\|91734_92532_+	hypothetical protein	NA	NA	NA	NA
AYR18971.1\|92515_93223_+	hypothetical protein	F8TUP9	EBPR_podovirus	9.4e-19	39.5
AYR18972.1\|93226_93550_+	DUF1064 domain-containing protein	NA	NA	NA	NA
AYR18973.1\|93563_93944_+	hypothetical protein	NA	NA	NA	NA
AYR18974.1\|93940_94189_+	hypothetical protein	NA	NA	NA	NA
AYR18975.1\|94363_94783_+	hypothetical protein	A0A059VK45	Pseudomonas_phage	1.0e-33	50.4
AYR18976.1\|94851_95775_+	hypothetical protein	A0A059VG08	Pseudomonas_phage	2.6e-114	62.9
AYR18977.1\|95786_96260_+	hypothetical protein	A0A059VF34	Pseudomonas_phage	1.3e-21	41.1
AYR18978.1\|96660_99882_+\|tail	phage tail tape measure protein	J7HXG0	Pseudomonas_phage	9.5e-26	30.9
AYR22028.1\|100062_100338_+	hypothetical protein	I7H418	Xanthomonas_virus	4.7e-11	38.5
AYR18979.1\|100334_100811_+	DUF1833 domain-containing protein	Q52PL0	Xanthomonas_phage	1.1e-20	33.8
AYR18980.1\|100846_101224_+	peptidoglycan endopeptidase	I7HBC4	Xanthomonas_virus	7.0e-13	35.6
AYR18981.1\|101210_108128_+	hypothetical protein	C4ML20	Xanthomonas_virus	4.0e-231	45.4
AYR22029.1\|108196_108499_+	hypothetical protein	NA	NA	NA	NA
AYR18982.1\|108692_109010_+	hypothetical protein	NA	NA	NA	NA
AYR18983.1\|109156_109381_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
AYR18984.1\|109364_109823_+	lysozyme	A0A0U4JP67	Pseudomonas_phage	1.3e-45	65.7

DBSCAN-SWA_2

862275 : 870936

uncultured_Mediterranean_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYR19614.1\|862275_863100_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	9.2e-34	46.9
AYR19615.1\|863096_863837_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.1e-69	51.0
AYR19616.1\|863951_864593_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
AYR19617.1\|864596_865655_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	5.6e-92	50.6
AYR19618.1\|865845_867138_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	6.0e-72	37.8
AYR22088.1\|867258_867639_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	4.1e-13	43.0
AYR19619.1\|867703_867967_-	DUF2024 family protein	NA	NA	NA	NA
AYR19620.1\|867991_868522_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
AYR19621.1\|868732_869329_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	1.9e-20	35.1
AYR19622.1\|869337_870936_-	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	2.7e-58	27.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP032521

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection