CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024738	Akkermansia muciniphila strain AMDK-3 chromosome, complete genome	2 crisprs	cas3,cas9,cas1,cas2,DinG,csa3	0	8	0	0

Cas Category Instructions

Results visualization

1. CP024738

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CRISPR-Cas detection and classification

Crispr_ID: CP024738_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024738_1

1029898-1030135

Orphan

Consensus_repeat	Method
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAA	CRISPRCasFinder
AAGGAGTGCGTGGATTGAAAC	CRT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	PILER-CR

3 spacers

The CRISPR arrays of CP024738_1

>merge|CP024738|1|1029898-1030135|CRISPRCasFinder,CRT,PILER-CR
GAGTCGCACTCTCATGAGTGCGTGGATTGAAACCCCCATATATTATCAGCTACAATGGTCATATTATGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCTGTACCCCGGATTCCGGAGGATAAAAACAATAGAAAGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTATTGCTCGTTGCTTGTCTGGCCGTCACAACATCCGTCGCACTCCGTAAGGAGTGCGTGGATTGAAAA

>CP024738|1|1|1029898-1030134|CRISPRCasFinder
GAGTCGCACTCTCATGAGTGCGTGGATTGAAA	CCCCCATATATTATCAGCTACAATGGTCATATTAT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAA	CCTGTACCCCGGATTCCGGAGGATAAAAACAATAGAAA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAA	CTATTGCTCGTTGCTTGTCTGGCCGTCACAACATCC
GTCGCACTCCGTAAGGAGTGCGTGGATTGAAA

>CP024738|1|1|1029910-1030135|CRT
CATGAGTGCGTGGATTGAAAC	CCCCATATATTATCAGCTACAATGGTCATATTATGTCGCACTCCGC
AAGGAGTGCGTGGATTGAAAC	CTGTACCCCGGATTCCGGAGGATAAAAACAATAGAAAGTCGCACTCCGC
AAGGAGTGCGTGGATTGAAAC	TATTGCTCGTTGCTTGTCTGGCCGTCACAACATCCGTCGCACTCCGT
AAGGAGTGCGTGGATTGAAAA

>CP024738|1|1|1029965-1030135|PILER-CR
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CTGTACCCCGGATTCCGGAGGATAAAAACAATAGAAA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TATTGCTCGTTGCTTGTCTGGCCGTCACAACATCC
GTCGCACTCCGTAAGGAGTGCGTGGATTGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP024738.1\|AYR30226.1\|1028102_1028348_-\|hypothetical-protein	unknown	unknown	unknown
CP024738.1\|AYR30235.1\|1035413_1035917_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|379034
CP024738.1\|AYR30224.1\|1023146_1024142_+\|hypothetical-protein	unknown	unknown	unknown
CP024738.1\|AYR30225.1\|1024300_1027882_+\|proline-dehydrogenase	unknown	unknown	gnl\|CDD\|143443
CP024738.1\|AYR30223.1\|1022697_1023147_+\|KH-domain-containing-protein	unknown	unknown	gnl\|CDD\|224760
CP024738.1\|AYR30233.1\|1033588_1033870_+\|hypothetical-protein	unknown	unknown	unknown
CP024738.1\|AYR30232.1\|1032704_1033592_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378829
CP024738.1\|AYR30218.1\|1016092_1016668_+\|rubrerythrin-family-protein	unknown	unknown	gnl\|CDD\|153100
CP024738.1\|AYR30227.1\|1028346_1029501_+\|acyltransferase	unknown	unknown	gnl\|CDD\|376607
CP024738.1\|AYR30234.1\|1033862_1034744_+\|hypothetical-protein	unknown	unknown	unknown
CP024738.1\|AYR30236.1\|1036097_1036442_+\|rubrerythrin	unknown	unknown	gnl\|CDD\|275328
CP024738.1\|AYR30229.1\|1030798_1031419_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222807
CP024738.1\|AYR30221.1\|1019917_1022185_-\|catalase-HPII	unknown	unknown	gnl\|CDD\|236886
CP024738.1\|AYR31536.1\|1030454_1030748_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367747
CP024738.1\|AYR30220.1\|1019376_1019556_-\|hypothetical-protein	unknown	unknown	unknown
CP024738.1\|AYR30222.1\|1022307_1022577_-\|hypothetical-protein	unknown	unknown	unknown
CP024738.1\|AYR30230.1\|1031734_1031950_+\|hypothetical-protein	unknown	unknown	unknown
CP024738.1\|AYR30231.1\|1031958_1032726_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378829
CP024738.1\|AYR30228.1\|1030200_1030458_-\|hypothetical-protein	unknown	unknown	unknown
CP024738.1\|AYR30219.1\|1016710_1019410_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274447

Protein	Function_ID	Function_description	E-value
CP024738.1\|AYR30218.1\|1016092_1016668_+\|rubrerythrin-family-protein	gnl\|CDD\|153100	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.	9.03876e-56
CP024738.1\|AYR30225.1\|1024300_1027882_+\|proline-dehydrogenase	gnl\|CDD\|143443	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.	0
CP024738.1\|AYR30227.1\|1028346_1029501_+\|acyltransferase	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	3.70377e-18
CP024738.1\|AYR30229.1\|1030798_1031419_-\|hypothetical-protein	gnl\|CDD\|222807	PHA00662, PHA00662, hypothetical protein.	1.96191e-22
CP024738.1\|AYR30232.1\|1032704_1033592_+\|hypothetical-protein	gnl\|CDD\|378829	pfam12236, Head-tail_con, Bacteriophage head to tail connecting protein. This family of head-tail connector proteins is found in bacteria and viruses. Proteins in this family are typically between 516 and 555 amino acids in length. This protein is found in Phage T7 and T3 among others.	2.07787e-58
CP024738.1\|AYR30235.1\|1035413_1035917_+\|thioredoxin-family-protein	gnl\|CDD\|379034	pfam13098, Thioredoxin_2, Thioredoxin-like domain.	1.707e-13
CP024738.1\|AYR30221.1\|1019917_1022185_-\|catalase-HPII	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
CP024738.1\|AYR30223.1\|1022697_1023147_+\|KH-domain-containing-protein	gnl\|CDD\|224760	COG1847, Jag, Predicted RNA-binding protein [General function prediction only].	4.91528e-30
CP024738.1\|AYR30236.1\|1036097_1036442_+\|rubrerythrin	gnl\|CDD\|275328	TIGR04535, conserved_hypothetical_protein, ferritin-like protein. Two families of proteins are known to be encoded, with some regularity, next to the gene for encapsulin (pfam04454), with surrounds the target protein to form a prokaryotic proteinaceous organelle. One is the family of enzymes that includes Dyp-type peroxidases. The other is this family, with a resemblance to bacterioferritins. Encapsulin-associated forms of the proteins in these two families have a necessary C-terminal motif that resembles DGSL[SGN]IGSL[KR]. Members of this family that include the last columns of the model in the hit region (and are encoded next to the encapsulin gene) should be designated encapsulin-associated ferritin-like protein.	9.48792e-18
CP024738.1\|AYR30231.1\|1031958_1032726_+\|hypothetical-protein	gnl\|CDD\|378829	pfam12236, Head-tail_con, Bacteriophage head to tail connecting protein. This family of head-tail connector proteins is found in bacteria and viruses. Proteins in this family are typically between 516 and 555 amino acids in length. This protein is found in Phage T7 and T3 among others.	1.8253e-85
CP024738.1\|AYR31536.1\|1030454_1030748_-\|hypothetical-protein	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	1.33159e-06
CP024738.1\|AYR30219.1\|1016710_1019410_+\|hypothetical-protein	gnl\|CDD\|274447	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair].	1.43672e-34

>CP024738.1|AYR30227.1|1028346_1029501_+|acyltransferase
MNTNQSLNSRGGHIAWVDFLRILACFLVVLAHCCDPFVGSFDGSFNFKSAVFWGSLVRPCVPLFVMISGVLLFPVTLEMGAFYSRRLKRVLVPLIVWSLALPLLYFGYFAAGVQTASPNIVMDTYTWSATVGKLYTFFFNFNYDTTPLWYVYMLVGLYLFMPIMSAWLTQARRKDVKIFLGIWIFSMTLPYIQMLAPALGYEGNYGNMGILGVCDWNPYGMFYNFSGFLGYMVLAHYLTKYPLAWSWKKTLSITIPLFLIGFAVTFFGFLETQKHFPGQYSKLEVLWYFSGINVFLMTFAIFAVVSRLRIKAGPVLSKVAALTFGVYLCHFFFVQCSYDFVNFIGLGGLPSAVKIPLMACLASAVSAALVWLLSLNRWTRKSIM
>CP024738.1|AYR30226.1|1028102_1028348_-|hypothetical-protein
MVTWEKKRRVIANVPDNIPVSRKRSIIKWRKETKSPQSLPPGNRGKLFGKACASCRLPRLFPHKNHGTFSYTTGIVHREAW
>CP024738.1|AYR30225.1|1024300_1027882_+|proline-dehydrogenase
MTDSSIPDMMAEARRGQWTDQQLAAKAVELAESILKQSNAGMRGKEKRQAQQMERMMNDPAGKAFTLALADRVFRPSSPVRGAELFRYLLDGYGVPRYLSAADRFAIKMGGRFSAQFPGVVMPVITSQLRKESSNVILPAEDGKLRPHLRRRRKGGIRMNINQLGEAILGESEAHHRLQQVVDRLTDKDCDYISVKISAIFSQIHLVAFEETVKLIQERLRILYRAAITNAVTLPDGSRKPKFVNLDMEEYRDLHLTAEAFKRTLMEDEFMQLEAGIVLQAYLPDSWEEQMKLCAWAKERVEQGGARIKIRLVKGANLAMEKVEASMHGWAQAPYGTKAQVDANYKRMLHYGCMPDNARYVQFGVASHNLFDLCYAMLLREREGVRDQVEFEMLEGMANHQARVIRQAADGLLLYAPVVLKEDFHSAIAYLVRRLDENTSEENFLHDLFGMTPGSRSWEVQKKRFLKACQEKDEVKYGPNRTQNRAADPIQPSHYRDAFANERDTDWSLRQNAEWINGLIAAEKEKSGEEIPLVIDGEEITTNLWGVGRDPSRHNEVSYKFAYADFDQVEHALVTADRVRSSWASKSIGERAEILHRAAQELSRIRGEAIAAMVRDAGKAPTEADVEVSEAIDFCRYYAEGLDRDGMNDGVEMSPLGIICVMSPWNFPFAIPTGGVAAALMAGNAVVFKPSELAVYTAWQIVQAFWRAGVPKNVLQFVPMPRNEISCKFLMDPRLNGVIMTGSYRTGKMLRELRPDLHVLAETSGKDAMIITATADPDQAVKDLVKSAFGHSGQKCSAASVAIVEASVYDNPAFLRQLKDAAASLKVGGSWEVNSVVTPLIREPEGNLLRALTQLEPGEEWLLKPEPSEDNPCLWSPGIRLGVKPGSWFHQTECFGPVLGIIRAENLEEAIDIQNDSEFGLTGGLQSLDEREIALWKTKVQVGNAYINRVITGAIVRRQPFGGWNHSSMGPGAKAGGPNYLTMLGSWEEKALPQKLRTPGERISGLVEKLCSELPDCAKRIRSAAGSQAKWWMEEFGVDHDPSRVYGENNTFRYIPVKGILARVENMSDDDVAILLLGAKLCGVLLHLSIGTSRPWIQKMHGYYASLTVETEAELIGRMPEALPGIRFLRGTDISETLANAARARDVEVLDRPVLANGRLELLGYFREQSVSETVHRYGNLIPPPGSFKTDSV
>CP024738.1|AYR30224.1|1023146_1024142_+|hypothetical-protein
MDGSLFMRALAVIAFLALAFPGRAEMDALSVSCSAAPSLPSPVLVVYGSEEPGSAEARWLKALQPGTEERRALDEYVRDVQFVTVPRHPSVKDWEEDGSLSRAVMHGVRMLPSVVFLDSKGRVFDLVEGGASAASLREKVSLLAEKAQRVRPVTRVNDIPKGGDPAAEASAICRELEQVPPEAWFRDYPGTMKRLEKLNCTVPAFLNAREAALRLEKNRKTAELLGESFRASKASSIRTCLEAWRTCADDPSLSVEERQLILLSMVHPLWVRLEKVLYREAHTPESEDAFNQAVAVLEEVRDMNRSSVCGRRAHQLREELRRARLAAARYD
>CP024738.1|AYR30223.1|1022697_1023147_+|KH-domain-containing-protein
MTVQEIAEQSLKSLLASLGFSADIEVTETDGIVCLNISSPDSQYIIGGDGDRLDDLQYLVNRMIQRKMEDAPRVKVDCDHYRERNEARLLEKARSLAERVQESGKPMKMPPLNAYHRRLVHNALQSMEGIVTESEEGDSRYKRITIRKG
>CP024738.1|AYR30222.1|1022307_1022577_-|hypothetical-protein
MKICGSSVPYHVRNTVPALPSGNTVPFLLRNQMQETPLRKEATVFCLPAAVPRLSPLLPAANETWNTDIHSHANQKGISAQPVLYYIKS
>CP024738.1|AYR30221.1|1019917_1022185_-|catalase-HPII
MNKPMKKKKPPMEDSAAPFPNGKEAAPHYTDTIDPELIKPTPKPTPPNAEPSAPGSMKMPDNATEKIRELDAMRSNGMGQALTSNLGVKISDDQNTLKAGSRGPSLLEDFHFLEKMAHFDQERIPERVVHARGSGAHGYFQVYKSLSKYTKAAFLQDPGEKTPVFVRFSTVQGFRGSPDTVRDIRGWATKFYTKEGNYDLVGNNTPVFFIQDAIKFPDFVHAVKPEPHNEMPQGQTAHDSFWDYVSLQPETLHNVMWAMSDRGIPRSFRTMEGFGIHTYKLVNEEGKSTFVRFHWKPVYGKKSLVWDEAQVLTGRDPDFHRKDLWQSIEAGDYPEYELGLQLIPEEDADQLDFDILDATKLIPEALVPVEIVGKMVLNRNPDNFFAETEQVAFCPANIVPGIDFSDDPLLQGRIFSYSDTQRHRLGGANFTEIPINRPICPFHNNQRDGFHRMQIDASPANYDPNSIGNNWPRETPPEKGGFTTSPQTVSGVKERLRNPSFAEYYSHPRLFWMSQTPVEQEHIINAFSFELGKVTRPYIRERVVDLLTRIDPDLASGVARNLGIQLTREQLSRELPRPVCGLEQDPSLSLYAHTDGNLKGLRVSLLAADGVSLKSVKEICEALHEEGIHPQIIAPHMGSVTTEEGEDLPVNGTLSGTPSVLFDSVIVPEGEQSIAALLKDGDAKYHLRQAYRHLKAIGLPGNAKAMLEAASLPQDMDDAGLLMPKDTKSLMPSFITAMKQHRVWSREPKTLDFGA
>CP024738.1|AYR30220.1|1019376_1019556_-|hypothetical-protein
MKKMRPHFSVLHACKIRTPQITEKGKKADKDFLFLSGNMFPYYFRNLFPYLTSTRRSAR
>CP024738.1|AYR30219.1|1016710_1019410_+|hypothetical-protein
MIVQSALFLDYGRLTLMDRERTDAVWKKYGRSLWNFAGSYGLGIALMLILLVLTFAGTLHQVRLSSAMGSEAAIESFFGAAYVLIPLGGENSLISLPLPGMGITCVLLFANLLIGGVFRIRWTWRHAGVLVAHGGILLLLAGIMLGNKMTVAVEQVELPQGDRVHEYSLPFDLRLNRFVPEFYPGTSKPKSYESQITVFPESGGQYDAVIRMNEPLRLSGWTLYQMSWGQDSLHPGRLISILRASHNPLEQMPKWSSYIIAVGLLWHFACVFGRYLRRKPGLASAGTAATDELQAVSAPGGKKRLRLAGICLLVAAIFGIGMLAARPDVHPVLVEHYVPWSPFLVERAGAMAVQDGGRLKPVSTYAGFHLLRTLGKRSFVVDTPEGKRKLSPVEWMLDCMFRPELAEQYPVFLVNREEVVRRLHLPDQKDKRKKYSYAQLAERWEEMTRAVREIRLLGETNLTEAQKEILSLARNFDVMRGWMLVSRIMLENPAAMERMEFPRWFPSAGRDGERLWTASPDKAAGAFLAMASLLERKAIGMAGAEASALRMKAEGLLLEKLAQPNEAASAGERHSLEREIFYYRLDPLYVSLAVFVAAFVCLLLCALFRPAANAPLWRRFLRPGGFSLAWLTGAGGAGVLVAALVIRVLITMRSPVGNTYETIAFIACMGVLCALVVELFSKKGIVLAAGLLLGAFSCQMGILYESSQAVDHMDPLVAILRSNFLLSTHVITIVLGYAAGLLAAVLSHIYLLASPLRLIGGKTEQSLDRMAYGILCFSLVFTLVGTVFGGIWGNESWGRFWGWDPKENGALMIVLWQLTVLHARKAGWLSSWLLHFSNVVGGVIIAFAWWGVNMLGVGLHSYGFTSGRDALDMFYWSEAVLCVLFIILHYRALRRVDVR
>CP024738.1|AYR30218.1|1016092_1016668_+|rubrerythrin-family-protein
MKSIKGTETEKNLLKAFAGESEARNRYTYFAGVAKKAGYEQIAAIFLETADNEKEHAKVFFKLLKDACIEVTHAVCTAPLESTEDCLLAAAAGEHDEWSDMYPAFAEVADREGFPAIAETFRKIASVEQHHEARYLKLAENVREGRVFAKEKEIQWKCRNCGYVHTGSTAPKVCPACAHPQAFFEELADNF
>CP024738.1|AYR30228.1|1030200_1030458_-|hypothetical-protein
MKNPLLSTEEKRRWLARVFRDEDGEYSQADKFKALVEDTKLAALQQEEEEFKRQREMGAAPQDPILDLLQSLPPAELNLNNHPSS
>CP024738.1|AYR31536.1|1030454_1030748_-|hypothetical-protein
MKALDFIQIFASNVRRLDFRLSSAQVILAVIAGYRRHSTITEATRLHPNTVTNILQDLIAQGYVNRIGDGRPYVYRPTADGEQLAGNLLDKNTFPGT
>CP024738.1|AYR30229.1|1030798_1031419_-|hypothetical-protein
MINESLLQPDTPSALDICNAALSKIGEAPLDALIANESTASRLCVLHYHPARRETLCMARWTFAATQTTLDSVSAQAPNSLTPYQFTLPADCLRVLDVECSEWKMQGRRIHASCAPLPLSYIADIENTDQFDPLFMDALATRLAEKLAMPLTGNQSLRQNLNQEFHKIILPQAATVNAVQCFSNDSHPLLDLLRKTKSPSCTEECE
>CP024738.1|AYR30230.1|1031734_1031950_+|hypothetical-protein
MGFMKPSTPSASAPEQTIPVKAESVEQEVGEDYQARERQRQGMISTILARRHSSSGQGEVNPRTLLRKTLG
>CP024738.1|AYR30231.1|1031958_1032726_+|hypothetical-protein
MEERTAELNSVYKSLAAQRAPWETWWDRLRDYVLPRRLNREGEVSLPNRDAMDRMTDTTAVEACQKLASGHMSYITPSHDVWFKWSAPDDRGGDEAEAWYNQCSEIALKELSVSNFYTEIHECFLDRVALGTGSLFTGTSSDGRLLFTNIPCGQFACAENAEGRVDTYVREFTYTAHQARSMFGVKALGPKAREVLERGGNPYATTLRFLHVVRPRTRRSRRREQASHMPFESVYLSLDDQVIVEEGDTWSSLIW
>CP024738.1|AYR30232.1|1032704_1033592_+|hypothetical-protein
MEFPYLVTRFLKWGSGPYGLAPGRLVFPAIQQVQFLNRILDTLGEVAAFPRILELANQIGEVDLRAGGRTVITPEAASLHLPREWATQGKYDVGMDRLAQKQDAIRRAYYLPMLELWSGHRGNMTATEVMARENERVLMFSPSFTLFVSDLYSTMTRIFSLLFRMGKFPRPPRAVLRVGRDGSVAVGEPRVVYQSKIALVLRRLQSEGMDRSLQRLNMMMQAAPDLADHVDWDHCFRLSARVDGAPESMLRPWADVRAMRKEREDLQQGASLAPAEEDPYASLNPLLDQLTAIQK
>CP024738.1|AYR30233.1|1033588_1033870_+|hypothetical-protein
MNQDTTLQQEASVREARFKRRQLLRVFDTPDGRETLSFLEARFQTDLPVFQGSPGNYDPLDAMRRDAYREIFLYIRRQLQLAIKETTEEEKND
>CP024738.1|AYR30234.1|1033862_1034744_+|hypothetical-protein
MIDSIDNSMAAPFRDAVGSGAVSPETDALSETAVQTEPFPPLLGEDGGFAPDWYARFDELKGMEKSLSKFKTPEALAKSYAELERLRRYPGVENEEQMARFRRLAGLPESEEEYRLERPESTPESEWNAGLAERMARTAYRYGVPPEAMNALQETMAQAYDEAREHMEDARMEMEMQAEQSLQQEWGANYERNMGRAAAVLRRLASETGVDADALLDNPGLGSNPDAIRLLYQASRLLDEAPLHHTGNAAPSPAEEAMRMESDPSHPLYEAYMNVNHPNHKYANELYDRLTTR
>CP024738.1|AYR30235.1|1035413_1035917_+|thioredoxin-family-protein
MMNRHFIFALCTVLGFSVSGISMAQSVPTDKEAAAKAAKAAKVKFRWGKSLKSAQKQAEETGLPIVLLFTGTSWCGFCVKLEKEILSKKDFKQGMDGVAIGVKFEFGSSDFSKSKEAKTYNITGVPAMVVVDADGKELGRTGYVPGRTPAQYVEFFKKYAPKTAEGK
>CP024738.1|AYR30236.1|1036097_1036442_+|rubrerythrin
MPEFTNAFSGLKEDRKLTHDELVRAIRFMIAAEYESIQLYTQLAASIDDKLAQEVLWDISNEEKEHAGEFLRLLQVLAPDEQGFYDEGMGETNEKIDKLKASCPDGACSSSAAH

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Crispr_ID: CP024738_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024738_2

1098742-1099501

TypeII

Consensus_repeat	Method
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CRISPRCasFinder
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CRT
CGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	PILER-CR
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	PILER-CR

11 spacers

cas2,cas1,cas9

The CRISPR arrays of CP024738_2

>merge|CP024738|2|1098742-1099501|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACATGATAAGCATTATTTTCGGCATCAAAGTCGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACATGATCATCCGTCAGCTCTACCTGCGCTACGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACCAATGGCCGCGGCGCATGCTGCGCCACAAGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACAGCAGGTCCGTAGGGGTAGAAGGTTCCTCCGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACCGGTGTAGAGGTTTGAGGATTTTAGATATTGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACTGAGCTTATGGAAGTCTCCCCTGTCAAATGGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACGATGAGGGGAACGCCGGAAAGAGTGATGAGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACCCGACTTTGCATTATGTGTGTTATGCGAAGGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACAACGGTGTTCTTTCCATTAGGAACAAAGACGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACCTCTGGCTCTGGATATTATGCTGTAGTGCTGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACCCTCCACGTATTTGTCCCCCAGCCCTGTCTGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC

>CP024738|2|2|1098742-1099501|CRISPRCasFinder
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	ATGATAAGCATTATTTTCGGCATCAAAGTC
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	ATGATCATCCGTCAGCTCTACCTGCGCTAC
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CAATGGCCGCGGCGCATGCTGCGCCACAA
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	AGCAGGTCCGTAGGGGTAGAAGGTTCCTCC
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CGGTGTAGAGGTTTGAGGATTTTAGATATT
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	TGAGCTTATGGAAGTCTCCCCTGTCAAATG
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	GATGAGGGGAACGCCGGAAAGAGTGATGA
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CCGACTTTGCATTATGTGTGTTATGCGAAG
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	AACGGTGTTCTTTCCATTAGGAACAAAGAC
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CTCTGGCTCTGGATATTATGCTGTAGTGCT
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CCTCCACGTATTTGTCCCCCAGCCCTGTCT
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC

>CP024738|2|2|1098742-1099501|CRT
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	ATGATAAGCATTATTTTCGGCATCAAAGTC
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	ATGATCATCCGTCAGCTCTACCTGCGCTAC
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CAATGGCCGCGGCGCATGCTGCGCCACAA
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	AGCAGGTCCGTAGGGGTAGAAGGTTCCTCC
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CGGTGTAGAGGTTTGAGGATTTTAGATATT
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	TGAGCTTATGGAAGTCTCCCCTGTCAAATG
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	GATGAGGGGAACGCCGGAAAGAGTGATGA
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CCGACTTTGCATTATGTGTGTTATGCGAAG
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	AACGGTGTTCTTTCCATTAGGAACAAAGAC
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CTCTGGCTCTGGATATTATGCTGTAGTGCT
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CCTCCACGTATTTGTCCCCCAGCCCTGTCT
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC

>CP024738|2|2|1098807-1099040|PILER-CR
CGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	ATGATCATCCGTCAGCTCTACCTGCGCTA
CGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CAATGGCCGCGGCGCATGCTGCGCCACA
AGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	AGCAGGTCCGTAGGGGTAGAAGGTTCCTC
CGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACCGGTGTAGAGGTTTGAGGATTTTAGATATTGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACTGAGCTTATGGAAGTCTCCCCTGTCAAATGGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	GATGAGGGGAACGCCGGAAAGAGTGATGA
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CCGACTTTGCATTATGTGTGTTATGCGAAG
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	AACGGTGTTCTTTCCATTAGGAACAAAGAC
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CTCTGGCTCTGGATATTATGCTGTAGTGCT
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CCTCCACGTATTTGTCCCCCAGCCCTGTCT


>CP024738|2|3|1099137-1099501|PILER-CR
	ATGATCATCCGTCAGCTCTACCTGCGCTA
CGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CAATGGCCGCGGCGCATGCTGCGCCACA
AGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	AGCAGGTCCGTAGGGGTAGAAGGTTCCTC
CGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACCGGTGTAGAGGTTTGAGGATTTTAGATATTGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAACTGAGCTTATGGAAGTCTCCCCTGTCAAATGGTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	GATGAGGGGAACGCCGGAAAGAGTGATGA
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CCGACTTTGCATTATGTGTGTTATGCGAAG
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	AACGGTGTTCTTTCCATTAGGAACAAAGAC
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CTCTGGCTCTGGATATTATGCTGTAGTGCT
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC	CCTCCACGTATTTGTCCCCCAGCCCTGTCT
GTTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP024738.1\|AYR30287.1\|1104681_1106136_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379166
CP024738.1\|AYR30286.1\|1102831_1104673_-\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
CP024738.1\|AYR30288.1\|1106105_1106720_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379166
CP024738.1\|AYR30279.1\|1094596_1095640_+\|hypothetical-protein	unknown	unknown	unknown
CP024738.1\|AYR31538.1\|1092118_1092559_-\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273242
CP024738.1\|AYR30276.1\|1089730_1090660_-\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273463
CP024738.1\|AYR30277.1\|1090696_1091983_-\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	unknown	unknown	gnl\|CDD\|225428
CP024738.1\|AYR30285.1\|1101913_1102741_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369572
CP024738.1\|AYR30280.1\|1095723_1097436_+\|hypothetical-protein	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|379160
CP024738.1\|AYR31539.1\|1100932_1101175_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
CP024738.1\|AYR30274.1\|1087463_1087949_-\|DUF4065-domain-containing-protein	unknown	unknown	gnl\|CDD\|226128
CP024738.1\|AYR30275.1\|1089097_1089712_-\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
CP024738.1\|AYR30282.1\|1098369_1098681_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
CP024738.1\|AYR30290.1\|1106915_1108100_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225365
CP024738.1\|AYR30278.1\|1092658_1093765_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
CP024738.1\|AYR30281.1\|1097446_1098382_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
CP024738.1\|AYR30284.1\|1101223_1101838_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|377540
CP024738.1\|AYR30291.1\|1108266_1109292_+\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
CP024738.1\|AYR30289.1\|1106737_1106923_+\|hypothetical-protein	unknown	unknown	unknown
CP024738.1\|AYR30283.1\|1099572_1100643_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271177

Protein	Function_ID	Function_description	E-value
CP024738.1\|AYR30287.1\|1104681_1106136_+\|hypothetical-protein	gnl\|CDD\|379166	pfam13402, Peptidase_M60, Peptidase M60, enhancin and enhancin-like. This family of peptidases contains a zinc metallopeptidase motif (HEXXHX(8,28)E) and possesses mucinase activity. It includes the viral enhancins as well as enhancin-like peptidases from bacterial species. Enhancins are a class of metalloproteases found in some baculoviruses that enhance viral infection by degrading the peritrophic membrane (PM) of the insect midgut. Bacterial enhancins are found to be cytotoxic when compared to viral enhancin, however, suggesting that the bacterial enhancins do not enhance infection in the same way as viral enhancin. Bacterial enhancins may have evolved a distinct biochemical function. These bacterial domains are peptidases targetting host glycoproteins and thus probably play an important role in successful colonisation of both vertebrate mucosal surfaces and the invertebrate digestive tract by both mutualistic and pathogenic microbes. This family has been augmented by a merge with the sequences in the Enhancin Pfam family.	4.002e-69
CP024738.1\|AYR30286.1\|1102831_1104673_-\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
CP024738.1\|AYR30288.1\|1106105_1106720_+\|hypothetical-protein	gnl\|CDD\|379166	pfam13402, Peptidase_M60, Peptidase M60, enhancin and enhancin-like. This family of peptidases contains a zinc metallopeptidase motif (HEXXHX(8,28)E) and possesses mucinase activity. It includes the viral enhancins as well as enhancin-like peptidases from bacterial species. Enhancins are a class of metalloproteases found in some baculoviruses that enhance viral infection by degrading the peritrophic membrane (PM) of the insect midgut. Bacterial enhancins are found to be cytotoxic when compared to viral enhancin, however, suggesting that the bacterial enhancins do not enhance infection in the same way as viral enhancin. Bacterial enhancins may have evolved a distinct biochemical function. These bacterial domains are peptidases targetting host glycoproteins and thus probably play an important role in successful colonisation of both vertebrate mucosal surfaces and the invertebrate digestive tract by both mutualistic and pathogenic microbes. This family has been augmented by a merge with the sequences in the Enhancin Pfam family.	1.91204e-13
CP024738.1\|AYR31538.1\|1092118_1092559_-\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|273242	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein. This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. [Unknown function, General].	3.23952e-43
CP024738.1\|AYR30276.1\|1089730_1090660_-\|cysteine-synthase-A	gnl\|CDD\|273463	TIGR01136, Cysteine_synthase, cysteine synthase. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff. [Amino acid biosynthesis, Serine family].	4.5848e-167
CP024738.1\|AYR30277.1\|1090696_1091983_-\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	gnl\|CDD\|225428	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism].	0
CP024738.1\|AYR30285.1\|1101913_1102741_-\|hypothetical-protein	gnl\|CDD\|369572	pfam07885, Ion_trans_2, Ion channel. This family includes the two membrane helix type ion channels found in bacteria.	4.71998e-13
CP024738.1\|AYR30280.1\|1095723_1097436_+\|hypothetical-protein	gnl\|CDD\|379160	pfam13395, HNH_4, HNH endonuclease. This HNH nuclease domain is found in CRISPR-related proteins.	2.30129e-15
CP024738.1\|AYR31539.1\|1100932_1101175_+\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	4.97405e-21
CP024738.1\|AYR30274.1\|1087463_1087949_-\|DUF4065-domain-containing-protein	gnl\|CDD\|226128	COG3600, GepA, Uncharacterized phage-associated protein [Function unknown].	3.35834e-18
CP024738.1\|AYR30275.1\|1089097_1089712_-\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	1.14429e-78
CP024738.1\|AYR30282.1\|1098369_1098681_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	9.33042e-28
CP024738.1\|AYR30290.1\|1106915_1108100_+\|MFS-transporter	gnl\|CDD\|225365	COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism].	7.62107e-68
CP024738.1\|AYR30278.1\|1092658_1093765_-\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	3.06253e-159
CP024738.1\|AYR30281.1\|1097446_1098382_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	5.48667e-46
CP024738.1\|AYR30284.1\|1101223_1101838_+\|DUF805-domain-containing-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	1.16351e-22
CP024738.1\|AYR30291.1\|1108266_1109292_+\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
CP024738.1\|AYR30283.1\|1099572_1100643_-\|hypothetical-protein	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.83131e-18

>CP024738.1|AYR30282.1|1098369_1098681_+|CRISPR-associated-endonuclease-Cas2
MGWLVVFFDLPTTTPEDKKNYQYFRKALLEDGYTMIQYSVYARACVTQERMATHSRRIQKMIPPDGSVRCLFVTNIQWDKMFVFHGRSCPRQEVSLPQQMLLW
>CP024738.1|AYR30281.1|1097446_1098382_+|type-II-CRISPR-associated-endonuclease-Cas1
MSYHILSIDAYTCHLSCDKGQLRCADGENSPRTIPLEDVGAVVLSSFKATLTSNLLIELARKRIGFVLCESYRPAVLLLPADRSTDTGLLRHLADMPARLRNRLWQKTLDAKCGNQTALAQAWNPHHPAIAELKRMAVTEKTAREAECARLFWSVFADTWANSDFRRGRHEEGFNNLFNYAYAILLSCILQYLFALGLDPCFGIFHQSREHAAPLAYDLMEPFRPAFDANVARWIHLCLREGKTEERAGEITREFRQHITATLQASVMYRDKQLPLKAAVEAVCRSFRKAVLAGQSEPYEPWLMTTIKWAG
>CP024738.1|AYR30280.1|1095723_1097436_+|hypothetical-protein
MTNNHLVRHRMLILDRLLKDLIQDFADGQKDRISRVCVEVGKELTTFSAMDSKKIQRELTLRQKSHTDAVNRLKRKLPGKALSANLIRKCRIAMDMNWTCPFTGATYGDHELENLELEHIVPHSFRQSNALSSLVLTWPGVNRMKGQRTGYDFVEQEQENPVPDKPNLHICSLNNYRELVEKLDDKKGHEDDRRRKKKRKALLMVRGLSHKHQSQNHEAMKEIGMTEGMMTQSSHLMKLACKSIKTSLPDAHIDMIPGAVTAEVRKAWDVFGVFKELCPEAADPDSGKILKENLRSLTHLHHALDACVLGLIPYIIPAHHNGLLRRVLAMRRIPEKLIPQVRPVANQRHYVLNDDGRMMLRDLSASLKENIREQLMEQRVIQHVPADMGGALLKETMQRVLSVDGSGEDAMVSLSKKKDGKKEKNQVKASKLVGVFPEGPSKLKALKAAIEIDGNYGVALDPKPVVIRHIKVFKRIMALKEQNGGKPVRILKKGMLIHLTSSKDPKHAGVWRIESIQDSKGGVKLDLQRAHCAVPKNKTHECNWREVDLISLLKKYQMKRYPTSYTGTPR
>CP024738.1|AYR30279.1|1094596_1095640_+|hypothetical-protein
MDKHGTATMAETICRELKLEEGKADAPMEVSTPAYKNLNTAFPRLIVEKEVRRILELSAPLIPGLTAEIIELIAQHHPLTTEQRGVLLQHGIKLARRYRGSLLFGQLIPRFDNRIISRCPVTWAQVYEAELKKGNSEQSARERAEKLSKVPTANCPEFYEYRMARILCNIRADGEPLSAEIRRELMNQARQEGKLTKASLEKAISSRLGKETETNVSNYFTLHPDSEEALYLNPAVEVLQRSGIGQILSPSVYRIAANRLRRGKSVTPNYLLNLLKSRGESGEALEKKIEKESKKKEADYADTPLKPKYATGRAPYARTVLKKVVEEILDGEDPTRPARGKRIRMGN
>CP024738.1|AYR30278.1|1092658_1093765_-|alanine-racemase
MPATSPPRAWAEIDLGAIRHNLNVVKQAAKGEYYMPVVKAGAYGHGLEQVCRTLDSEGIAFFGVANVGEARRISQAGCRTRPYILGPAFPEEREEIVLNGWRSFISTMEEAAHYNSLARLYGKTLPIHLSVDTGMGRGGFLPDQLEELLSRLGELDSLHLEGLGAHLPCADEDREITLRQISRFEQMAARIREKLPLKYCHLANSAASLDYEIPSNNMCRPGLVLYGFSPIPSPWAAQLKPAMALFSRLTVVRTLPEGHGISYGGTFVTDHPTRVATVGIGYADGYLRSLAHKGARVMVDGVSCPLLGRVTMDQIMVDVSRAPHAEPGMTAEIMGPHIPVTELAEKAGTISWEIFTGIGPRVPRHYTH
>CP024738.1|AYR31538.1|1092118_1092559_-|Rrf2-family-transcriptional-regulator
MKVSTRGRYALRLMIDLAQHRDEGYISLKEISARQDVTVRYLEQIIAILLKAGFVQSFRGKAGGYRLSRHPREYTTEDILKLTEGSLLPLSCTASHENPCPRAAGCATLPFWRGLQQVIENYLRRVTLEDLAEQQKEIGCDYGAGI
>CP024738.1|AYR30277.1|1090696_1091983_-|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase
MSKNHRFETRQIHVGQESPDPATDARAVPIYATTSYVFKDSEQAAGRFALAEPGNIYNRLMNPTADVFEKRIASLEGGTAALAVSTGAAAVTYAIQNIARAGDHIVSSSTVYGGTYNLFANTLADAGIETTFVDARDVQNFSRAIRNNTKALYVESLGNPNCDIVDMEALAEVAHAHGIPLIVDSTFATPFLFRPLEHGADIVVHSATKFIGGHGTVMGGVIVDGGKFDWTQNDKFPGISKPNPNYHGAVFAEVCGNLAYIVKIRATLLRDTGATISPFNSFLLLQGLETLSLRVERHVQNALRVADYLASHPQVERVNHPSLPDHPDHDLYKRYYPNGGGSIFTFEIKGGAEKARKFCESLELFSLLANVADVKSLVIHPASTTHSQMTEEELKAGGITPSTVRLSIGTEHIDDILEDLEQGFRAIL
>CP024738.1|AYR30276.1|1089730_1090660_-|cysteine-synthase-A
MRIYKNITELIGGTPLLELTNYERRNGLNATLLAKLEYLNPAGSVKDRIAQAMIDAAEAAGKLKPDSVIIEPTSGNTGIGLAAVATSRGYRIILTMPETMSVERRNLLKAYGAELVLTDGALGMKGAISKAEELAAGLPNSFIPGQFANPSNPEAHFRTTGPEIWNDTEGKADIFVAGVGTGGTITGVGKYLKTRNPDIRIVAVEPFSSPVLTQGTAGPHKIQGIGAGFVPGTLDTSVYDEVIAVTNEDAFSTGKELARTDGVLTGISSGAALWAATQVARRPENEGKTIVVLLPDTGDRYLSTPLFTD
>CP024738.1|AYR30275.1|1089097_1089712_-|thiamine-phosphate-synthase
MKKFNLHLYLVTDEASKCRLSLLETVRKAADGGVTIVQYRSTNPDAGTCYREALPIRDFLASRGIPFIVNNRIDLALALEADGVHIGQRDLPVPSVRAMIGPDKILGLSVSNKEQLRAVDASLVDYLGMGPVFPTISKLNAPPVLGVEGFAALASQSPLPVVAIGGLDAERARQVRATGTASGIAVVSAICGAENPETAARALA
>CP024738.1|AYR30274.1|1087463_1087949_-|DUF4065-domain-containing-protein
MEATHFSMANSTTTQKLCNWFIQQANAKELILTPVKLNHLVILADWWHLHRTGAFLINERVEAWPSGPVLPSIYHEYKDQPPYSSIEHPSRRQPPLEEETDIIPFLEHIWNVYGKYTAQQLGRINTAPSSPWKQSQGKHEQAHRQQITEEHVQAYFKSLAG
>CP024738.1|AYR30283.1|1099572_1100643_-|hypothetical-protein
MNIPTSSFPTDADQAGIFLIRSLGIPPMDAFLLLKDLLDTSRGRGDRITRAKRCIRLGGEALADREKSVSFSQAVRASLEARKHRRPRTLQEIRYMAARMMKKCPELARKQVRSITPEDCGRYLRKSFPTPRQRHKGRLILSGILNYSLKRGWCRRNAAFLVPPPILREKRIRALSLYEAKRLLHTAEQLFRGECLPACALMLYAGIRPHEVKRLTWKHINLKSGLVSLAPTHTKTGGSRHVSILPVLGSILSRMSSAGSPARSVCPPNWEKKWKEVRRRSGILKKSGWVQDVLRHTYASYHLAHFCNQNLLQKEMGHSSPSLLLARYLNMEGITSATGAMFWTHSFVSPAPLKED
>CP024738.1|AYR31539.1|1100932_1101175_+|sel1-repeat-family-protein
MLGDCYFFGNGVGKNKREAVNWYFLSAKKGNAEAQRRLGACFYFGHGVAKNRQEAIRWYRLAAEQGNTVAISMLKKLGVM
>CP024738.1|AYR30284.1|1101223_1101838_+|DUF805-domain-containing-protein
MKKVMEQSEERLSRIDAYNKLVDVAILTKTSSKAVADIVNNELGIECNASDVQEILKSSVSASDMHKIRREIEGNASIKMGNANRNLFLKKYVSFSGRISRSEYWVLKLLILPMMASILLCGVVMMWSKTGNDAGMLVLTVIIFICFIYFNIVADVRRLHDIGESGWWVFLKLVPLANIVIAAFLFFKGGQAVGNQHRDLRASH
>CP024738.1|AYR30285.1|1101913_1102741_-|hypothetical-protein
MNSLRHMPRHVLFLRLAYQAGMCLLALVAVTLTAIDLTTEAAEWEVTADRIIYWIFVLDYVIRFSISRSKWLFVKEHPWDLLAIIPFDALFRLFRFASLGEILRLARYLDLFSYAMRFTTRIRRFFNTNGFKYICIAALVIILLGAVGIHLAEGMSLPNGIWWSFVTATTVGYGDTYPVTTSGKFLAVFLMLTGIGFVGTLTSTITSFFLSPHGGEALPYREEEIEAIKKKLDDLSSMTDEDIDTMAALLKTLRDASSAPPAEKEETPDIHSGKN
>CP024738.1|AYR30286.1|1102831_1104673_-|molecular-chaperone-HtpG
MNTETHQFQAEVRQLLDIVINALYSDREIFVRELVSNASDALEKLRLKQLTDSNIYQPDKPLEITVATDKENKTITIADTGIGMTEADLVENLGTIAHSGTKKFMEALKQKQEGGADLIGQFGVGFYSSFMVADRVEVFTRSYEPEAASLRWSSDGREGYSIETLAEPLDRGTRIVIRLKDEYEEFSQEYRVKELLRRYSNFVGFPLNFNGEHINTVQAIWSKSKSDVKPEEYDEFYQFISHTDEKPLSYMHFSADAPIALNALLFIPRRNPEMFGFGRVDANVALYCKRVLIDAKPEGLLPEWLRFLNGVVDSEDLPLNISREMLQDNSLVRKISDIITRRFIKHLEKLAKDDKETYREFYAQFSRYLKEGVVTSWPNKESLGKLLRFESTSTEPGETTSFEEYLTRMKEGQTAIYALTGPSRSHLENSPYLEAFKARGYEVAFFTDHGDEFVLDSLSSVDGKPVTMIDRADVELPALEEEQKDALPQEEAAALEEWLKGLYPDKFSKVTLGKRLVSGAAVALQSGNDMGPEMRAYMKAMGQEVPESHPQLELNPSNPLVKKLSALRTENPELAQMVADQIANTALLRAGMLDDPAVLAQSSQALMEQLLLK
>CP024738.1|AYR30287.1|1104681_1106136_+|hypothetical-protein
MFCERHYTAPVKGDGQFFSLGLSVPCHTKGLFPGHGRGRAFFLETIPETEQYYLTNMIFSPLLKKGVLLLALCGVLGGGVLSAQEAGGAPITEEGLKALDSNVFANEYMLALKPNVTRDRIARIKDPFVRGLATRMAEKKFDRKARALTAEPYEPVKDLAERLRTSQYSKFENPTGIFFEEGEDVLLVMGDPKGEKLNLVIHNFGRDGGHSSYPLKEGVNIIRAKNKGLGYIEYFTPNYKKAPKVHLSILSGKVNGVFVGGVSKNSDWKKMLENSPTEVVDIVGSRVHLVYPVEELKQFCPDKGEELIALYDRIIGMEQQIMGLYKYRMLPKNRMFGRVIWNGFMHADGTGAAFHNGTMKEVGNPDRIPGSAWGIAHEFGHVNQVRPAMKWVSTGEVTNNIYSAYVNYMLNPSSMRLEHERINGGDGNMIGGRFNAYLNNGILKGENWLVQSGPDKRSGGDNRPMVHDHFVKLAPCGSLSCISR
>CP024738.1|AYR30288.1|1106105_1106720_+|hypothetical-protein
MWQLELYFKVAGKGNPDFYPDIFYKAIKMDTRGKKDGELQLAFMKNACDAARQDLTDFFRKTGMLKPIDQELDDYTCARMTITEADCKNLIAYARKYKKPESPVIYYISVNSAEAYKNRLPVRGVYNQGVTEQGNRRVVSHDVWKNAVVFETYKDREMVRITMVGTDSRDNSSTTVPYPEGSTRIEAVSWDGRRTLVYGKRPAK
>CP024738.1|AYR30289.1|1106737_1106923_+|hypothetical-protein
MFGRRRSPGRRRFFMAGGMENRREIVSPDGLSVMPCFRTADSRKAVTFEQGRGQGCITWDG
>CP024738.1|AYR30290.1|1106915_1108100_+|MFS-transporter
MDKAGTSGGIRGKMLLFVAFLIVCFNLRTGFDSPDPLLGTIERDMGLSLENSGLFALLPVFVLGVAAPISPRVARWMTPWKIIFWFQLLAVAGIFWRSWDGVAGLYGGMVLMGLGMGIAGAAIPGLIKHQFPDHASAMMGVYSAMIGVGSAAASGLSVPISNMLGGWRFGLGVWIIPILLGMLVWGAYFLRHPAGVFQSDPAASGHNLLRSGKAWQVTVFYLSRVGAAYFFYTWIPIFLRQRGMSYEDAGFILSVAMFAQLPATLSAHVLEKATGGRGLLIVMAMALAALSCWGILYLPPDWALWMAILFGLATGTVFSRGMALMVERARTPSESIRLSGMSQGIGFTMGALLSLLFTSFLHQGGSFLPFCLVYTFFCVLGMVSGRMSARPGYV
>CP024738.1|AYR30291.1|1108266_1109292_+|phenylalanine--tRNA-ligase-subunit-alpha
MKEEIVRIQRDALARIAQASDRRGVEDARVAILGKKGELTLAQTGMKDVPREEKPAVGQLLNEARKAITEALDAKLEEVQAQADKAAVAGVDLTLPARSLPPGGLHPLTIVRDEAVRILRHMGFALADGPEIEDEFHCFDALNTPEDHPARNEKDTFYFDSGKLLRTHTSSVQIRSMEKQLPPVRVIAPGSAYRRDEIDATHLSAFNQLEGLYVDTDVSVGDLKGTLEYFLRALFGSGTEVRFRPHFFPFTEPSFEIDVKLKVDGQAPRWVEIAGCGMVDPNVFEAVDRELGLDPGAQARYTGLTGFAFGIGLDRLAMIRWGIRDIRALIENDVRFLAQFQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP024738_2	2.2\|1098844\|30\|CP024738\|CRISPRCasFinder,CRT	1098844-1098873	30	NZ_AP021899	Akkermansia muciniphila strain JCM 30893 plasmid pJ30893, complete sequence	21780-21809	2	0.933
CP024738_2	2.4\|1098975\|30\|CP024738\|CRISPRCasFinder,CRT	1098975-1099004	30	NZ_AP021899	Akkermansia muciniphila strain JCM 30893 plasmid pJ30893, complete sequence	7822-7851	2	0.933
CP024738_2	2.12\|1098844\|29\|CP024738\|PILER-CR	1098844-1098872	29	NZ_AP021899	Akkermansia muciniphila strain JCM 30893 plasmid pJ30893, complete sequence	21781-21809	2	0.931
CP024738_2	2.14\|1098975\|29\|CP024738\|PILER-CR	1098975-1099003	29	NZ_AP021899	Akkermansia muciniphila strain JCM 30893 plasmid pJ30893, complete sequence	7822-7850	2	0.931
CP024738_2	2.13\|1098910\|28\|CP024738\|PILER-CR	1098910-1098937	28	NC_021278	Mycobacteroides abscessus subsp. bolletii 50594 plasmid 1, complete sequence	93563-93590	4	0.857
CP024738_2	2.3\|1098910\|29\|CP024738\|CRISPRCasFinder,CRT	1098910-1098938	29	NC_021278	Mycobacteroides abscessus subsp. bolletii 50594 plasmid 1, complete sequence	93563-93591	5	0.828
CP024738_2	2.12\|1098844\|29\|CP024738\|PILER-CR	1098844-1098872	29	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	149850-149878	6	0.793
CP024738_2	2.1\|1098778\|30\|CP024738\|CRISPRCasFinder,CRT	1098778-1098807	30	NZ_CP032091	Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence	210509-210538	7	0.767
CP024738_2	2.2\|1098844\|30\|CP024738\|CRISPRCasFinder,CRT	1098844-1098873	30	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	149849-149878	7	0.767
CP024738_2	2.12\|1098844\|29\|CP024738\|PILER-CR	1098844-1098872	29	MF150911	Ralstonia phage DU_RP_II, complete genome	36789-36817	7	0.759
CP024738_2	2.13\|1098910\|28\|CP024738\|PILER-CR	1098910-1098937	28	NZ_CP010326	Pantoea sp. PSNIH1 plasmid pPSP-3a9, complete sequence	232821-232848	7	0.75
CP024738_2	2.2\|1098844\|30\|CP024738\|CRISPRCasFinder,CRT	1098844-1098873	30	MF150911	Ralstonia phage DU_RP_II, complete genome	36789-36818	8	0.733
CP024738_2	2.3\|1098910\|29\|CP024738\|CRISPRCasFinder,CRT	1098910-1098938	29	NZ_CP010326	Pantoea sp. PSNIH1 plasmid pPSP-3a9, complete sequence	232821-232849	8	0.724
CP024738_1	1.8\|1030068\|35\|CP024738\|PILER-CR	1030068-1030102	35	NZ_CP044330	Methylocystis rosea strain BRCS1 plasmid unnamed2, complete sequence	26699-26733	10	0.714
CP024738_1	1.8\|1030068\|35\|CP024738\|PILER-CR	1030068-1030102	35	NZ_CP034088	Methylocystis rosea strain GW6 plasmid pGW6_2, complete sequence	156976-157010	10	0.714

1. spacer 2.2|1098844|30|CP024738|CRISPRCasFinder,CRT matches to NZ_AP021899 (Akkermansia muciniphila strain JCM 30893 plasmid pJ30893, complete sequence) position: , mismatch: 2, identity: 0.933

atgatcatccgtcagctctacctgcgctac	CRISPR spacer
ctgatcatccggcagctctacctgcgctac	Protospacer
 ********** ******************

2. spacer 2.4|1098975|30|CP024738|CRISPRCasFinder,CRT matches to NZ_AP021899 (Akkermansia muciniphila strain JCM 30893 plasmid pJ30893, complete sequence) position: , mismatch: 2, identity: 0.933

agcaggtccgtaggggtagaaggttcctcc	CRISPR spacer
tgctggtccgtaggggtagaaggttcctcc	Protospacer
 ** **************************

3. spacer 2.12|1098844|29|CP024738|PILER-CR matches to NZ_AP021899 (Akkermansia muciniphila strain JCM 30893 plasmid pJ30893, complete sequence) position: , mismatch: 2, identity: 0.931

atgatcatccgtcagctctacctgcgcta	CRISPR spacer
ctgatcatccggcagctctacctgcgcta	Protospacer
 ********** *****************

4. spacer 2.14|1098975|29|CP024738|PILER-CR matches to NZ_AP021899 (Akkermansia muciniphila strain JCM 30893 plasmid pJ30893, complete sequence) position: , mismatch: 2, identity: 0.931

agcaggtccgtaggggtagaaggttcctc	CRISPR spacer
tgctggtccgtaggggtagaaggttcctc	Protospacer
 ** *************************

5. spacer 2.13|1098910|28|CP024738|PILER-CR matches to NC_021278 (Mycobacteroides abscessus subsp. bolletii 50594 plasmid 1, complete sequence) position: , mismatch: 4, identity: 0.857

caatggccgcggcgcatgctgcgccaca	CRISPR spacer
ccgtcgccgcggcgcatgctgcggcaca	Protospacer
* .* ****************** ****

6. spacer 2.3|1098910|29|CP024738|CRISPRCasFinder,CRT matches to NC_021278 (Mycobacteroides abscessus subsp. bolletii 50594 plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.828

caatggccgcggcgcatgctgcgccacaa	CRISPR spacer
ccgtcgccgcggcgcatgctgcggcacag	Protospacer
* .* ****************** ****.

7. spacer 2.12|1098844|29|CP024738|PILER-CR matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

atgatcatccgtcagctctacctgcgcta	CRISPR spacer
aacggcatccgccagcactacctgcgcta	Protospacer
*  . ******.**** ************

8. spacer 2.1|1098778|30|CP024738|CRISPRCasFinder,CRT matches to NZ_CP032091 (Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

atgataagcattattttcggcatcaaagtc	CRISPR spacer
taaataggcattatttttggcatcaaaata	Protospacer
  .***.**********.*********.*

9. spacer 2.2|1098844|30|CP024738|CRISPRCasFinder,CRT matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

atgatcatccgtcagctctacctgcgctac	CRISPR spacer
aacggcatccgccagcactacctgcgctat	Protospacer
*  . ******.**** ************.

10. spacer 2.12|1098844|29|CP024738|PILER-CR matches to MF150911 (Ralstonia phage DU_RP_II, complete genome) position: , mismatch: 7, identity: 0.759

atgatcatccgtcagctctacctgcgcta	CRISPR spacer
catttcatcggtcagctctaccggcgcca	Protospacer
    ***** ************ ****.*

11. spacer 2.13|1098910|28|CP024738|PILER-CR matches to NZ_CP010326 (Pantoea sp. PSNIH1 plasmid pPSP-3a9, complete sequence) position: , mismatch: 7, identity: 0.75

caatggccgcggcgcatgctgcgccaca	CRISPR spacer
gcctggcagcggcgcacgctgcgccagc	Protospacer
   **** ********.*********

12. spacer 2.2|1098844|30|CP024738|CRISPRCasFinder,CRT matches to MF150911 (Ralstonia phage DU_RP_II, complete genome) position: , mismatch: 8, identity: 0.733

atgatcatccgtcagctctacctgcgctac	CRISPR spacer
catttcatcggtcagctctaccggcgccag	Protospacer
    ***** ************ ****.*

13. spacer 2.3|1098910|29|CP024738|CRISPRCasFinder,CRT matches to NZ_CP010326 (Pantoea sp. PSNIH1 plasmid pPSP-3a9, complete sequence) position: , mismatch: 8, identity: 0.724

caatggccgcggcgcatgctgcgccacaa	CRISPR spacer
gcctggcagcggcgcacgctgcgccagcc	Protospacer
   **** ********.*********

14. spacer 1.8|1030068|35|CP024738|PILER-CR matches to NZ_CP044330 (Methylocystis rosea strain BRCS1 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

tattgctcgttgcttgtctggccgtcacaacatcc	CRISPR spacer
agaccatcgtcgcttgtctggccgtgacaacgacc	Protospacer
 . .  ****.************** *****. **

15. spacer 1.8|1030068|35|CP024738|PILER-CR matches to NZ_CP034088 (Methylocystis rosea strain GW6 plasmid pGW6_2, complete sequence) position: , mismatch: 10, identity: 0.714

tattgctcgttgcttgtctggccgtcacaacatcc	CRISPR spacer
agaccatcgtcgcttgtctggccgtgacaacgacc	Protospacer
 . .  ****.************** *****. **

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage