CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029930	Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 chromosome, complete genome	1 crisprs	DEDDh,WYL,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	0	3	12	0
CP029931	Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence	1 crisprs	csa3	0	2	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029930_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029930_1

2902056-2902476

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

6 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of CP029930_1

>merge|CP029930|1|2902056-2902476|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGGCGCGGGGAACACGGACAGCAACCCGTGTCGGATATCAGACAGATCGGTTTATCCCCGCTGGCGCGGGGAACACACGCGAATCGCCAATCGCCGCCGCGTGAATTGCGGTTTATCCCCGCTGGCGCGGGGAACACCCACGATGTATGCCGACCGTGATTTTTACCGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGATACGCCTTTACGTCGCCCTCTTTGGCGCGCGGTTTATCCCCGCTGGCGCGGGGAACACATTAAAAAAGATTAATGTTGGTTATAGTTTTACGGTTTATCCCCGCTGGTGCGGGGAACACTAAAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP029930|1|1|2902056-2902450|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GGACAGCAACCCGTGTCGGATATCAGACAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAAAAAAGATTAATGTTGGTTATAGTTTTA
CGGTTTATCCCCGCTGGTGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGATCGG

>CP029930|1|1|2902056-2902450|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GGACAGCAACCCGTGTCGGATATCAGACAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAAAAAAGATTAATGTTGGTTATAGTTTTA
CGGTTTATCCCCGCTGGTGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGATCGG

>CP029930|1|1|2902117-2902476|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAAAAAAGATTAATGTTGGTTATAGTTTTA
CGGTTTATCCCCGCTGGTGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP029930.1\|AYS08921.1\|2906293_2906896_-\|CRISPR/Cas-system-associated-protein-Cse2	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
CP029930.1\|AYS08918.1\|2903773_2904478_-\|CRISPR/Cas-system-associated-RAMP-superfamily-protein	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
CP029930.1\|AYS08913.1\|2898386_2899826_-\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
CP029930.1\|AYS08915.1\|2900994_2902041_+\|alkaline-phosphatase-isozyme-conversion-protein	unknown	unknown	gnl\|CDD\|182299
CP029930.1\|AYS08923.1\|2908605_2908779_-\|hypothetical-protein	unknown	unknown	unknown
CP029930.1\|AYS08924.1\|2911886_2912840_+\|pathogenicity-island-1-effector-protein-SopD	unknown	unknown	gnl\|CDD\|185277
CP029930.1\|AYS08908.1\|2895710_2896190_-\|2C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP029930.1\|AYS08911.1\|2897420_2897777_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371891
CP029930.1\|AYS08907.1\|2894664_2895714_-\|tRNA-pseudouridine-synthase-D	unknown	unknown	gnl\|CDD\|234884
CP029930.1\|AYS08912.1\|2897794_2898400_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP029930.1\|AYS08916.1\|2902560_2902854_-\|ssRNA-endonuclease	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP029930.1\|AYS08920.1\|2905212_2906277_-\|Cse4-family-CRISPR-associated-protein	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP029930.1\|AYS08925.1\|2912927_2913662_-\|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase	unknown	unknown	gnl\|CDD\|234997
CP029930.1\|AYS08922.1\|2906912_2908448_-\|Cse1-family-CRISPR-associated-protein	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP029930.1\|AYS08909.1\|2896189_2896900_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP029930.1\|AYS08910.1\|2896918_2897230_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP029930.1\|AYS08906.1\|2893922_2894684_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP029930.1\|AYS08917.1\|2902856_2903774_-\|CRISPR/Cas-system-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP029930.1\|AYS08919.1\|2904477_2905203_-\|CRISPR-associated-protein-Cas5	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP029930.1\|AYS08914.1\|2899835_2900744_-\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235375

Protein	Function_ID	Function_description	E-value
CP029930.1\|AYS08921.1\|2906293_2906896_-\|CRISPR/Cas-system-associated-protein-Cse2	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.74874e-39
CP029930.1\|AYS08918.1\|2903773_2904478_-\|CRISPR/Cas-system-associated-RAMP-superfamily-protein	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	2.23447e-89
CP029930.1\|AYS08913.1\|2898386_2899826_-\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP029930.1\|AYS08915.1\|2900994_2902041_+\|alkaline-phosphatase-isozyme-conversion-protein	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP029930.1\|AYS08924.1\|2911886_2912840_+\|pathogenicity-island-1-effector-protein-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP029930.1\|AYS08908.1\|2895710_2896190_-\|2C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP029930.1\|AYS08911.1\|2897420_2897777_-\|hypothetical-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP029930.1\|AYS08907.1\|2894664_2895714_-\|tRNA-pseudouridine-synthase-D	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP029930.1\|AYS08912.1\|2897794_2898400_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP029930.1\|AYS08916.1\|2902560_2902854_-\|ssRNA-endonuclease	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.81067e-65
CP029930.1\|AYS08920.1\|2905212_2906277_-\|Cse4-family-CRISPR-associated-protein	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.07119e-119
CP029930.1\|AYS08925.1\|2912927_2913662_-\|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.17372e-138
CP029930.1\|AYS08922.1\|2906912_2908448_-\|Cse1-family-CRISPR-associated-protein	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP029930.1\|AYS08909.1\|2896189_2896900_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
CP029930.1\|AYS08910.1\|2896918_2897230_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP029930.1\|AYS08906.1\|2893922_2894684_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP029930.1\|AYS08917.1\|2902856_2903774_-\|CRISPR/Cas-system-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.77553e-155
CP029930.1\|AYS08919.1\|2904477_2905203_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.27863e-48
CP029930.1\|AYS08914.1\|2899835_2900744_-\|ATP-sulfurylase	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0

>CP029930.1|AYS08915.1|2900994_2902041_+|alkaline-phosphatase-isozyme-conversion-protein
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLNNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP029930.1|AYS08914.1|2899835_2900744_-|ATP-sulfurylase
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP029930.1|AYS08913.1|2898386_2899826_-|ATP-sulfurylase
MNTILAQQIASEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNPDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEVCAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP029930.1|AYS08912.1|2897794_2898400_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP029930.1|AYS08911.1|2897420_2897777_-|hypothetical-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP029930.1|AYS08910.1|2896918_2897230_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP029930.1|AYS08909.1|2896189_2896900_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP029930.1|AYS08908.1|2895710_2896190_-|2C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP029930.1|AYS08907.1|2894664_2895714_-|tRNA-pseudouridine-synthase-D
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADVLAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP029930.1|AYS08906.1|2893922_2894684_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>CP029930.1|AYS08916.1|2902560_2902854_-|ssRNA-endonuclease
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>CP029930.1|AYS08917.1|2902856_2903774_-|CRISPR/Cas-system-associated-protein-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWGGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFEIVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSHPIAIPLPVALGDSGHRST
>CP029930.1|AYS08918.1|2903773_2904478_-|CRISPR/Cas-system-associated-RAMP-superfamily-protein
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHSLFLIETKLFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>CP029930.1|AYS08919.1|2904477_2905203_-|CRISPR-associated-protein-Cas5
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>CP029930.1|AYS08920.1|2905212_2906277_-|Cse4-family-CRISPR-associated-protein
MIMTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFDRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>CP029930.1|AYS08921.1|2906293_2906896_-|CRISPR/Cas-system-associated-protein-Cse2
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERSRIRWANEYLSTSRGK
>CP029930.1|AYS08922.1|2906912_2908448_-|Cse1-family-CRISPR-associated-protein
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMNKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>CP029930.1|AYS08923.1|2908605_2908779_-|hypothetical-protein
MKSIINWDTGNWPVFLSGLGYPHWRGERCAIKTASTVYPIILGNVLKITDNYKKYIV
>CP029930.1|AYS08924.1|2911886_2912840_+|pathogenicity-island-1-effector-protein-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP029930.1|AYS08925.1|2912927_2913662_-|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWAQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029930_1	1.3\|2902207\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902207-2902238	32	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	453979-454010	5	0.844
CP029930_1	1.3\|2902207\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902207-2902238	32	NZ_KU130294	Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence	251896-251927	5	0.844
CP029930_1	1.3\|2902207\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902207-2902238	32	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	6517-6548	5	0.844
CP029930_1	1.3\|2902207\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902207-2902238	32	NZ_CP039989	Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence	238872-238903	5	0.844
CP029930_1	1.3\|2902207\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902207-2902238	32	NZ_MN433457	Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence	235351-235382	5	0.844
CP029930_1	1.3\|2902207\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902207-2902238	32	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	378779-378810	5	0.844
CP029930_1	1.3\|2902207\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902207-2902238	32	NZ_CP045003	Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence	82539-82570	5	0.844
CP029930_1	1.3\|2902207\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902207-2902238	32	NZ_CP045917	Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence	224279-224310	5	0.844
CP029930_1	1.3\|2902207\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902207-2902238	32	MF344571	Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence	221127-221158	5	0.844
CP029930_1	1.3\|2902207\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902207-2902238	32	MF344569	Pseudomonas aeruginosa plasmid p12939-PER, complete sequence	284046-284077	5	0.844
CP029930_1	1.3\|2902207\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902207-2902238	32	MF344570	Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence	219145-219176	5	0.844
CP029930_1	1.3\|2902207\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902207-2902238	32	NZ_CP039294	Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence	55495-55526	5	0.844
CP029930_1	1.3\|2902207\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902207-2902238	32	CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	376216-376247	5	0.844
CP029930_1	1.3\|2902207\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902207-2902238	32	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	134871-134902	5	0.844
CP029930_1	1.3\|2902207\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902207-2902238	32	NZ_CP016215	Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence	88841-88872	5	0.844
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	KJ019071	Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome	59609-59640	7	0.781
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	MN694480	Marine virus AFVG_250M133, complete genome	20886-20917	7	0.781
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	MN694671	Marine virus AFVG_250M145, complete genome	23163-23194	7	0.781
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	MN694753	Marine virus AFVG_250M144, complete genome	25459-25490	7	0.781
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	MN694231	Marine virus AFVG_250M143, complete genome	21163-21194	7	0.781
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	MN693981	Marine virus AFVG_250M146, complete genome	18773-18804	7	0.781
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	NZ_CP046723	Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence	559039-559070	8	0.75
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	214654-214685	8	0.75
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	NZ_CP034149	Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence	578776-578807	8	0.75
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	592092-592123	8	0.75
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	MN694115	Marine virus AFVG_250M901, complete genome	49467-49498	8	0.75
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	NZ_CP046630	Streptococcus equinus strain CNU G6 plasmid p1_CNU_G6, complete sequence	66427-66458	9	0.719
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	NZ_CP046920	Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence	70206-70237	9	0.719
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	MN694046	Marine virus AFVG_250M906, complete genome	22321-22352	9	0.719
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	MN693836	Marine virus AFVG_250M487, complete genome	10882-10913	9	0.719
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	MN693891	Marine virus AFVG_250M480, complete genome	21841-21872	9	0.719
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	MK268344	Salmonella phage Munch, complete genome	122526-122557	9	0.719
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	MN694071	Marine virus AFVG_250M483, complete genome	16976-17007	9	0.719
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	MN694294	Marine virus AFVG_250M486, complete genome	8469-8500	9	0.719
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	MN693751	Marine virus AFVG_250M485, complete genome	13096-13127	9	0.719
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	MN694002	Marine virus AFVG_250M481, complete genome	18787-18818	9	0.719
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	MN694650	Marine virus AFVG_250M482, complete genome	20198-20229	9	0.719
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	MN693906	Marine virus AFVG_250M905, complete genome	17506-17537	9	0.719
CP029930_1	1.5\|2902329\|32\|CP029930\|CRISPRCasFinder,CRT,PILER-CR	2902329-2902360	32	MN694711	Marine virus AFVG_250M484, complete genome	24974-25005	9	0.719
CP029930_1	1.6\|2902390\|32\|CP029930\|CRISPRCasFinder,CRT	2902390-2902421	32	KR052482	Sinorhizobium phage phiN3, complete genome	197290-197321	9	0.719

1. spacer 1.3|2902207|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

2. spacer 1.3|2902207|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU130294 (Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

3. spacer 1.3|2902207|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

4. spacer 1.3|2902207|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039989 (Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

5. spacer 1.3|2902207|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MN433457 (Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

6. spacer 1.3|2902207|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

7. spacer 1.3|2902207|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045003 (Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

8. spacer 1.3|2902207|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045917 (Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

9. spacer 1.3|2902207|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MF344571 (Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

10. spacer 1.3|2902207|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MF344569 (Pseudomonas aeruginosa plasmid p12939-PER, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

11. spacer 1.3|2902207|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MF344570 (Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

12. spacer 1.3|2902207|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039294 (Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

13. spacer 1.3|2902207|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

14. spacer 1.3|2902207|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015879 (Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

15. spacer 1.3|2902207|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016215 (Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

16. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to KJ019071 (Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aattacaatggttaatgttggttatagtttag	Protospacer
* * * ** *.******************* .

17. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MN694480 (Marine virus AFVG_250M133, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

18. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MN694671 (Marine virus AFVG_250M145, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

19. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MN694753 (Marine virus AFVG_250M144, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

20. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MN694231 (Marine virus AFVG_250M143, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

21. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MN693981 (Marine virus AFVG_250M146, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

22. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

23. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

24. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

25. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

26. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MN694115 (Marine virus AFVG_250M901, complete genome) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
attaaaaaatattaatcttggttcttccgtaa	Protospacer
********* ****** ****** *  . * *

27. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046630 (Streptococcus equinus strain CNU G6 plasmid p1_CNU_G6, complete sequence) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aagaaaaatgattaatgttgtttataataact	Protospacer
*  ***** *********** *****.*  .

28. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046920 (Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aagaaaaatgattaatgttgtttataataact	Protospacer
*  ***** *********** *****.*  .

29. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MN694046 (Marine virus AFVG_250M906, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

30. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MN693836 (Marine virus AFVG_250M487, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

31. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MN693891 (Marine virus AFVG_250M480, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

32. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MK268344 (Salmonella phage Munch, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
ggcagcattgattaatgatggttttagtttta	Protospacer
. .*. *  ******** ***** ********

33. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MN694071 (Marine virus AFVG_250M483, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

34. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MN694294 (Marine virus AFVG_250M486, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

35. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MN693751 (Marine virus AFVG_250M485, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

36. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MN694002 (Marine virus AFVG_250M481, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

37. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MN694650 (Marine virus AFVG_250M482, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

38. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MN693906 (Marine virus AFVG_250M905, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

39. spacer 1.5|2902329|32|CP029930|CRISPRCasFinder,CRT,PILER-CR matches to MN694711 (Marine virus AFVG_250M484, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

40. spacer 1.6|2902390|32|CP029930|CRISPRCasFinder,CRT matches to KR052482 (Sinorhizobium phage phiN3, complete genome) position: , mismatch: 9, identity: 0.719

taaaacaccggttgcgcaacctccgcggggat	CRISPR spacer
aacaacaccggttgcgaaacctacgcaaaaaa	Protospacer
 * ************* ***** ***....*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

930298 : 937610

Dickeya_phage(16.67%)

integrase,protease

attL 931549:931563|attR 942728:942742

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS07147.1\|930298_931417_+	hypothetical protein	A0A140XAI1	Dickeya_phage	8.1e-09	39.8
AYS07148.1\|931413_933360_+	macrolide transporter ATP-binding protein/permease	G9BWD6	Planktothrix_phage	2.0e-39	43.1
931549:931563	attL	NA	NA	NA	NA
AYS07149.1\|933489_933711_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AYS07150.1\|934034_934355_+\|protease	ATP-dependent Clp protease adaptor protein	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AYS07151.1\|934385_936662_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.8e-164	42.2
AYS07152.1\|937232_937610_-\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
942728:942742	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1008523 : 1085835

Salmonella_phage(73.33%)

protease,integrase,transposase,tail,terminase

attL 990589:990608|attR 1061196:1061215

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
990589:990608	attL	NA	NA	NA	NA
AYS07202.1\|1008523_1009864_-\|integrase	integrase	S4TSP2	Salmonella_phage	7.9e-261	99.8
AYS07203.1\|1009860_1010109_-	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
AYS07204.1\|1010149_1010395_-	bacteriophage protein	S4TR31	Salmonella_phage	1.3e-36	96.2
AYS07205.1\|1010394_1011276_-	DNA methylase	A0A0M4R347	Salmonella_phage	1.2e-153	93.0
AYS07206.1\|1011272_1012337_-	bacteriophage protein	T1SBJ4	Salmonella_phage	6.3e-152	74.6
AYS07207.1\|1012414_1013095_-	exonuclease	A0A0M3ULE0	Salmonella_phage	1.9e-130	98.7
AYS07208.1\|1013091_1013877_-	bacteriophage recombination protein	A0A0M4RD39	Salmonella_phage	9.7e-150	99.6
AYS07209.1\|1013882_1014179_-	host-nuclease inhibitor protein	A0A0M5M5Z9	Salmonella_phage	4.4e-47	96.9
AYS07210.1\|1014269_1014470_-	prophage Kil protein	G8C7T2	Escherichia_phage	2.4e-12	48.4
AYS07211.1\|1014758_1015163_-	DNA-binding protein	H6WRX4	Salmonella_phage	7.1e-72	99.3
AYS07212.1\|1015494_1015869_+	DNA-binding protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
AYS07213.1\|1015953_1016937_+	bacteriophage protein	H6WRX7	Salmonella_phage	2.1e-162	99.7
AYS07214.1\|1016939_1017689_+	DNA replication protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
AYS07215.1\|1017699_1018047_+	DNA-binding protein	H6WRX9	Salmonella_phage	4.8e-53	90.4
AYS07216.1\|1018043_1018568_+	bacteriophage protein	A0A220NQV2	Salmonella_phage	1.8e-91	99.4
AYS07217.1\|1018567_1019041_+	methyltransferase	H9C170	Pectobacterium_phage	1.6e-67	80.1
AYS07218.1\|1019044_1019617_+	bacteriophage protein	S4TSR6	Salmonella_phage	1.3e-66	68.0
AYS07219.1\|1019710_1019977_+	bacteriophage protein	S4TNF2	Salmonella_phage	1.5e-46	100.0
AYS07220.1\|1020058_1020220_+	bacteriophage protein	NA	NA	NA	NA
AYS07221.1\|1020652_1021150_+	bacteriophage protein	NA	NA	NA	NA
AYS07222.1\|1021334_1021574_+	damage-inducible protein	H6WRY5	Salmonella_phage	3.9e-38	100.0
AYS07223.1\|1021563_1021869_+	bacteriophage protein	H6WRY6	Salmonella_phage	9.8e-42	100.0
AYS07224.1\|1021908_1022511_+	bacteriophage protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
AYS07225.1\|1022719_1023331_+	bacteriophage lambda protein NinG	A0A0M4RU10	Salmonella_phage	2.5e-92	99.5
AYS07226.1\|1023463_1024261_+	prophage antitermination protein	A0A0M4S661	Salmonella_phage	3.4e-150	99.2
AYS07227.1\|1024659_1024785_+	bacteriophage protein	NA	NA	NA	NA
AYS07228.1\|1024920_1025370_-	lipoprotein	NA	NA	NA	NA
AYS07229.1\|1025586_1025976_+	prophage membrane protein	K7PHB9	Enterobacterial_phage	3.1e-40	70.2
AYS07230.1\|1025962_1026244_+	prophage membrane protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
AYS07231.1\|1026243_1026858_+	bacteriophage protein	Q8HA86	Salmonella_phage	3.2e-108	93.1
AYS07232.1\|1027076_1027331_+	hypothetical protein	NA	NA	NA	NA
AYS07233.1\|1027435_1027813_+	hypothetical protein	Q6UAR9	Klebsiella_phage	4.9e-43	68.5
AYS07234.1\|1027876_1028137_+	hypothetical protein	NA	NA	NA	NA
AYS07235.1\|1028226_1028979_+\|terminase	prophage terminase small subunit	A0A0M3ULJ9	Salmonella_phage	3.4e-11	56.5
AYS07236.1\|1028944_1030348_+	bacteriophage protein	A0A077KAW0	Edwardsiella_phage	6.5e-189	70.1
AYS07237.1\|1030347_1031817_+	hypothetical protein	A0A0M4S6U1	Salmonella_phage	1.7e-280	99.2
AYS07238.1\|1031908_1032439_+	hypothetical protein	A0A0M4REK0	Salmonella_phage	8.7e-86	87.4
AYS07239.1\|1032453_1033686_+	hypothetical protein	A0A0M4R5A6	Salmonella_phage	1.4e-227	99.0
AYS07240.1\|1033690_1034188_+	bacteriophage protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
AYS07241.1\|1034199_1035141_+	bacteriophage protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	100.0
AYS07242.1\|1035182_1035551_+	bacteriophage protein	A0A0M4RTX5	Salmonella_phage	8.7e-61	100.0
AYS07243.1\|1035516_1035924_+	bacteriophage protein	A0A0M5M3S2	Salmonella_phage	7.1e-72	97.8
AYS07244.1\|1035920_1036475_+	bacteriophage protein	A0A0M4S631	Salmonella_phage	4.8e-95	100.0
AYS07245.1\|1036461_1036851_+	bacteriophage protein	A0A0M3ULK0	Salmonella_phage	6.0e-68	98.4
AYS07246.1\|1036825_1037389_+	bacteriophage protein	A0A0M4R331	Salmonella_phage	8.9e-81	75.3
AYS07247.1\|1037392_1038538_+	bacteriophage protein	A0A2H4J8G4	uncultured_Caudovirales_phage	2.2e-163	74.5
AYS07248.1\|1038549_1038990_+	bacteriophage protein	A0A2H4J619	uncultured_Caudovirales_phage	3.5e-56	74.7
AYS07249.1\|1038993_1039446_+	bacteriophage protein	A0A0M4S6U8	Salmonella_phage	1.9e-57	76.6
AYS07250.1\|1039623_1041576_+	bacteriophage protein	A0A0M4REK7	Salmonella_phage	1.8e-181	56.0
AYS07251.1\|1041575_1042226_+	bacteriophage protein	A0A0M3ULD5	Salmonella_phage	3.0e-56	60.6
AYS07252.1\|1042229_1042532_+	bacteriophage protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	57.0
AYS07253.1\|1042534_1043566_+	bacteriophage protein	A0A2H4J1B2	uncultured_Caudovirales_phage	1.2e-96	51.4
AYS07254.1\|1043562_1043898_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.1e-20	52.2
AYS07255.1\|1044092_1044824_+	bacteriophage protein	NA	NA	NA	NA
AYS07256.1\|1044823_1045252_+	bacteriophage protein	NA	NA	NA	NA
AYS07257.1\|1045310_1046066_+	bacteriophage protein	A0A0M5M1K7	Salmonella_phage	4.1e-105	85.3
AYS07258.1\|1046153_1046291_+	bacteriophage protein	A0A0M4S639	Salmonella_phage	2.0e-18	100.0
AYS07259.1\|1046306_1046660_+	bacteriophage protein	A0A0M4R339	Salmonella_phage	3.2e-60	98.3
AYS07260.1\|1046660_1047860_+	bacteriophage protein	A0A0M4RD32	Salmonella_phage	8.5e-214	97.5
AYS07261.1\|1047856_1048537_+	bacteriophage protein	A0A0M5M1K4	Salmonella_phage	6.9e-128	98.7
AYS07262.1\|1048536_1050048_+\|tail	bacteriophage tail protein	S4TP62	Salmonella_phage	1.5e-111	59.4
AYS07263.1\|1050062_1050581_+\|tail	tail fiber protein	A0A1B0VCD0	Salmonella_phage	1.7e-46	62.8
AYS07264.1\|1051502_1052204_-	hypothetical protein	NA	NA	NA	NA
AYS07265.1\|1052516_1052795_-	hypothetical protein	S4TNM0	Salmonella_phage	2.4e-26	92.3
AYS07266.1\|1053220_1055833_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.1e-19	22.6
AYS07267.1\|1056040_1057051_+	dihydroorotate dehydrogenase	NA	NA	NA	NA
AYS07268.1\|1057213_1057759_+	hypothetical protein	NA	NA	NA	NA
AYS07269.1\|1057755_1058865_-	MOSC domain-containing protein	NA	NA	NA	NA
AYS07270.1\|1058963_1061072_+	23S rRNA m(2)G2445 methyltransferase	W6LLI2	Streptococcus_phage	5.1e-20	29.6
AYS07271.1\|1061084_1062992_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
1061196:1061215	attR	NA	NA	NA	NA
AYS07272.1\|1063006_1064260_+	inner membrane protein	NA	NA	NA	NA
AYS07273.1\|1064264_1065905_+	paraquat-inducible protein B	NA	NA	NA	NA
AYS07274.1\|1065901_1066465_+	lipoprotein	NA	NA	NA	NA
AYS07275.1\|1066718_1066886_+	ribosome modulation factor	NA	NA	NA	NA
AYS07276.1\|1066985_1067504_-	D-3-hydroxydecanoyl-(acyl carrier-protein) dehydratase	NA	NA	NA	NA
AYS07277.1\|1067572_1069333_-\|protease	ATP-dependent protease	NA	NA	NA	NA
AYS07278.1\|1069518_1069971_+	Ter macrodomain organizer matS-binding protein	NA	NA	NA	NA
AYS07279.1\|1070042_1071095_-	outer membrane protein A	NA	NA	NA	NA
AYS07280.1\|1071449_1071959_-	cell division inhibitor	NA	NA	NA	NA
AYS07281.1\|1072175_1072781_+	competence-specific transcriptional regulator TfoX	NA	NA	NA	NA
AYS07282.1\|1072767_1074921_-	inner membrane protein	NA	NA	NA	NA
AYS07283.1\|1074939_1075386_-	hypothetical protein	NA	NA	NA	NA
AYS07284.1\|1075509_1077564_+	helicase IV	A7KV33	Bacillus_phage	6.5e-20	27.6
AYS07285.1\|1077599_1078058_-	methylglyoxal synthase	NA	NA	NA	NA
AYS07286.1\|1078152_1078815_-	hypothetical protein	NA	NA	NA	NA
AYS07287.1\|1078985_1079402_+	hypothetical protein	NA	NA	NA	NA
AYS07288.1\|1079446_1079764_-	heat shock protein HspQ	NA	NA	NA	NA
AYS07289.1\|1079821_1081033_-	23S rRNA m(5)C1962 methyltransferase	NA	NA	NA	NA
AYS07290.1\|1082164_1082623_+\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYS07291.1\|1083359_1083641_+	acylphosphatase	NA	NA	NA	NA
AYS07292.1\|1083637_1083967_-	sulfite reductase	NA	NA	NA	NA
AYS07293.1\|1084053_1084713_-	hypothetical protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
AYS07294.1\|1085376_1085835_+\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1528654 : 1601594

Burkholderia_virus(43.24%)

tRNA,protease,plate,transposase,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS07694.1\|1528654_1529113_-\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYS07695.1\|1529615_1529897_+	stress response protein	NA	NA	NA	NA
AYS07696.1\|1530165_1530987_+\|protease	serine protease	NA	NA	NA	NA
AYS07697.1\|1531021_1531351_-	multidrug efflux system protein MdtI	NA	NA	NA	NA
AYS07698.1\|1531337_1531700_-	multidrug efflux system protein MdtJ	NA	NA	NA	NA
AYS07699.1\|1531811_1531982_-	hypothetical protein	NA	NA	NA	NA
AYS07700.1\|1532116_1533151_+	hypothetical protein	NA	NA	NA	NA
AYS07701.1\|1533325_1534714_-	pyridine nucleotide transhydrogenase subunit beta	NA	NA	NA	NA
AYS07702.1\|1534724_1536254_-	pyridine nucleotide transhydrogenase subunit alpha	NA	NA	NA	NA
AYS07703.1\|1536780_1537725_+	hypothetical protein	NA	NA	NA	NA
AYS07704.1\|1537906_1538296_-	bacteriophage transcriptional regulator	Q6QIE8	Burkholderia_phage	4.5e-31	54.2
AYS07705.1\|1538267_1538720_-	hypothetical protein	A4JWM5	Burkholderia_virus	1.2e-24	46.6
AYS07706.1\|1538914_1539145_-	hypothetical protein	NA	NA	NA	NA
AYS07707.1\|1539141_1539825_-	hypothetical protein	A0A2P9JZH4	Alteromonadaceae_phage	2.6e-34	37.3
AYS07708.1\|1539821_1540037_-	hypothetical protein	NA	NA	NA	NA
AYS07709.1\|1540029_1540413_-	hypothetical protein	K7PJQ4	Enterobacteria_phage	2.3e-27	58.9
AYS07710.1\|1540409_1540712_-	hypothetical protein	NA	NA	NA	NA
AYS07711.1\|1540721_1540994_-	hypothetical protein	NA	NA	NA	NA
AYS07712.1\|1541282_1541813_-	bacteriophage host-nuclease inhibitor protein	L7P7T1	Pseudomonas_phage	3.4e-58	66.1
AYS07713.1\|1541840_1542110_-	hypothetical protein	NA	NA	NA	NA
AYS07714.1\|1542112_1543279_-	ExeA protein	A4JWN1	Burkholderia_virus	3.3e-122	59.7
AYS07715.1\|1543289_1545059_-	hypothetical protein	Q6QIE0	Burkholderia_phage	2.8e-229	68.5
AYS07716.1\|1545236_1545668_-	hypothetical protein	A4JWN3	Burkholderia_virus	4.5e-32	57.3
AYS07717.1\|1545663_1546260_+	hypothetical protein	NA	NA	NA	NA
AYS07718.1\|1546503_1546854_+	hypothetical protein	A4JWP3	Burkholderia_virus	4.5e-22	53.0
AYS07719.1\|1547568_1548219_+	lipoprotein	Q5ZQY9	Pseudomonas_phage	8.1e-09	32.9
AYS07720.1\|1548215_1548542_+	hypothetical protein	Q6QIC4	Burkholderia_phage	9.6e-19	49.5
AYS07721.1\|1548541_1548853_+	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
AYS07722.1\|1548852_1549398_+	hypothetical protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
AYS07723.1\|1549394_1550990_+	hypothetical protein	A4JWJ4	Burkholderia_virus	9.3e-184	62.6
AYS07724.1\|1550989_1552486_+	hypothetical protein	A4JWJ5	Burkholderia_virus	8.0e-169	59.6
AYS07725.1\|1552466_1553288_+\|head	phage head morphogenesis protein	A4JWJ6	Burkholderia_virus	5.3e-98	61.2
AYS07726.1\|1553290_1553749_+	bacteriophage protein	Q6QIB8	Burkholderia_phage	1.5e-30	44.8
AYS07727.1\|1553963_1555079_+	hypothetical protein	A4JWJ9	Burkholderia_virus	7.9e-97	51.1
AYS07728.1\|1555093_1556047_+	hypothetical protein	A4JWK0	Burkholderia_virus	5.2e-65	44.5
AYS07729.1\|1556056_1556395_+	hypothetical protein	NA	NA	NA	NA
AYS07730.1\|1556396_1556843_+	hypothetical protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
AYS07731.1\|1556842_1557307_+	hypothetical protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
AYS07732.1\|1557303_1557558_+	hypothetical protein	NA	NA	NA	NA
AYS07733.1\|1557547_1558975_+\|tail	bacteriophage tail sheath protein	A4JWK5	Burkholderia_virus	3.7e-216	77.4
AYS07734.1\|1558974_1559496_+\|tail	tail core protein	A4JWK6	Burkholderia_virus	8.0e-68	68.2
AYS07735.1\|1559498_1559780_+	hypothetical protein	NA	NA	NA	NA
AYS07736.1\|1559877_1560213_+	hypothetical protein	NA	NA	NA	NA
AYS07737.1\|1560388_1562854_+	bacteriophage protein	A4JWL0	Burkholderia_virus	2.2e-168	42.6
AYS07738.1\|1562853_1563738_+	hypothetical protein	A4JWL1	Burkholderia_virus	7.5e-50	47.0
AYS07739.1\|1563734_1563950_+\|tail	bacteriophage tail fiber protein	Q6QIA3	Burkholderia_phage	2.4e-18	60.0
AYS07740.1\|1563937_1565092_+	bacteriophage regulatory protein	Q6QIA2	Burkholderia_phage	4.7e-84	47.1
AYS07741.1\|1565088_1565616_+\|plate	bacteriophage baseplate protein	Q6QIA1	Burkholderia_phage	1.5e-21	46.5
AYS07742.1\|1565672_1566020_+\|plate	bacteriophage baseplate protein	Q6QIA0	Burkholderia_phage	8.6e-34	60.6
AYS07743.1\|1566010_1567114_+\|plate	bacteriophage baseplate assembly protein	Q6QI99	Burkholderia_phage	5.4e-106	54.3
AYS07744.1\|1567106_1567685_+\|tail	bacteriophage tail fiber protein	A4JWL7	Burkholderia_virus	6.4e-66	65.8
AYS07745.1\|1567687_1568713_+\|tail	bacteriophage tail fiber protein	M1TAS6	Escherichia_phage	1.6e-64	53.3
AYS07746.1\|1569226_1569844_+\|tail	bacteriophage tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	5.8e-65	59.9
AYS07747.1\|1570882_1571455_+	DNA-invertase	A0A0A7NPV4	Enterobacteria_phage	8.8e-84	84.7
AYS07748.1\|1571735_1573118_+	amino acid permease	NA	NA	NA	NA
AYS07749.1\|1573179_1573515_-	hypothetical protein	NA	NA	NA	NA
AYS07750.1\|1573641_1574373_+	two-component response regulator	NA	NA	NA	NA
AYS07751.1\|1574853_1576005_+	outer membrane protein	Q1MVN1	Enterobacteria_phage	3.2e-117	59.1
AYS07752.1\|1576157_1577864_+	metal-dependent hydrolase	NA	NA	NA	NA
AYS07753.1\|1577971_1579276_+	two component sensor kinase	W8CYF6	Bacillus_phage	5.7e-14	22.7
AYS07754.1\|1579351_1580281_+	DNA sequence-specific contrahelicase	NA	NA	NA	NA
AYS07755.1\|1580277_1581681_-	fumarate hydratase class II	NA	NA	NA	NA
AYS07756.1\|1581848_1583495_-	Fumarate hydratase class I	NA	NA	NA	NA
AYS07757.1\|1583694_1584870_+	mannose-6-phosphate isomerase	NA	NA	NA	NA
AYS07758.1\|1584972_1586481_+	hypothetical protein	NA	NA	NA	NA
AYS07759.1\|1587186_1588188_+	adenosine deaminase	NA	NA	NA	NA
AYS07760.1\|1588261_1589377_-	oxidoreductase	NA	NA	NA	NA
AYS07761.1\|1589479_1589635_+	hypothetical protein	NA	NA	NA	NA
AYS07762.1\|1589933_1590149_+	oriC-binding nucleoid-associated protein	NA	NA	NA	NA
AYS07763.1\|1590237_1590678_+	hypothetical protein	NA	NA	NA	NA
AYS07764.1\|1590754_1591336_+	Na(+)-translocating NADH-quinone reductase subunit E	NA	NA	NA	NA
AYS07765.1\|1591335_1591914_+	ferredoxin-like protein	NA	NA	NA	NA
AYS07766.1\|1593742_1594801_+	electron transport complex protein RnfD	NA	NA	NA	NA
AYS07767.1\|1594804_1595425_+	electron transport complex protein RnfG	NA	NA	NA	NA
AYS07768.1\|1595427_1596120_+	electron transport complex protein RsxE	NA	NA	NA	NA
AYS07769.1\|1596119_1596755_+	endonuclease III	NA	NA	NA	NA
AYS07770.1\|1597355_1598861_+	proton/oligopeptide symporter	NA	NA	NA	NA
AYS07771.1\|1598965_1599571_+	glutathione S-transferase	NA	NA	NA	NA
AYS07772.1\|1600319_1601594_-\|tRNA	tyrosyl-tRNA synthetase	K4F5T3	Cronobacter_phage	1.6e-85	42.1

DBSCAN-SWA_4

1782631 : 1787043

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS07956.1\|1782631_1782871_+	virulence protein	K7P6H1	Enterobacteria_phage	5.5e-32	87.3
AYS07957.1\|1783743_1784553_+	toxin-like protein	A5LH53	Enterobacteria_phage	2.1e-62	50.0
AYS07958.1\|1784625_1785003_+	hypothetical protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
AYS07959.1\|1785150_1785693_-	hypothetical protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
AYS07960.1\|1785884_1786613_-	pertussis toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	4.9e-63	53.3
AYS07961.1\|1786629_1787043_-	pertussis-like toxin subunit	A0A0U2KD34	Escherichia_phage	1.4e-19	38.6

DBSCAN-SWA_5

1990896 : 1998130

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS08151.1\|1990896_1992327_-	DNA-cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
AYS08152.1\|1992400_1993096_-	hypothetical protein	S4W232	Pandoravirus	2.1e-07	27.5
AYS08153.1\|1993175_1993487_-	hypothetical protein	NA	NA	NA	NA
AYS08154.1\|1994137_1995322_+	outer membrane protein S1	Q1MVN1	Enterobacteria_phage	1.4e-107	56.4
AYS08155.1\|1995781_1995994_-	cold shock protein	A0A1W6JNX5	Morganella_phage	1.5e-20	70.0
AYS08156.1\|1996439_1997708_-	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	3.3e-224	91.2
AYS08157.1\|1997710_1998130_-	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

DBSCAN-SWA_6

2104431 : 2114938

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS08254.1\|2104431_2105745_-	dehydratase RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
AYS08255.1\|2105771_2106851_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.1
AYS08256.1\|2106855_2107629_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AYS08257.1\|2107644_2108619_-	reductase RfbI	NA	NA	NA	NA
AYS08258.1\|2108624_2109176_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.7e-53	58.6
AYS08259.1\|2109176_2110055_-	TDP-glucose pyrophosphorylase	I7I009	Enterobacteria_phage	2.3e-107	64.8
AYS08260.1\|2110102_2111002_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.9e-31	36.3
AYS08261.1\|2111001_2112087_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
AYS08262.1\|2112463_2113357_-	UTP-glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AYS08263.1\|2113534_2114938_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.1e-21	26.5

DBSCAN-SWA_7

2192167 : 2201338

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS08323.1\|2192167_2194201_+\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	6.1e-55	26.9
AYS08324.1\|2194441_2194900_+	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AYS08325.1\|2195071_2195602_+	lipoprotein	NA	NA	NA	NA
AYS08326.1\|2195658_2196126_-	hypothetical protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AYS08327.1\|2196172_2196892_-	two-component system response regulator	NA	NA	NA	NA
AYS08328.1\|2196888_2198574_-	two-component system sensor kinase	Q9EYF3	Enterobacteria_phage	1.1e-278	91.1
AYS08329.1\|2198796_2199528_+	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AYS08330.1\|2199587_2199695_+	hypothetical protein	NA	NA	NA	NA
AYS08331.1\|2199675_2200407_-	ABC transporter permease	NA	NA	NA	NA
AYS08332.1\|2200390_2201338_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2

DBSCAN-SWA_8

2736783 : 2750175

Salmonella_phage(70.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS08761.1\|2736783_2737002_-	hypothetical protein	Q53ZE7	Salmonella_virus	1.9e-18	71.9
AYS08762.1\|2737092_2738193_-	hypothetical protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
AYS08763.1\|2738189_2738675_-\|tail	bacteriophage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
AYS08764.1\|2738671_2741749_-\|tail	bacteriophage tail protein	E5G6Q1	Salmonella_phage	0.0e+00	63.0
AYS08765.1\|2741741_2741861_-	bacteriophage protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
AYS08766.1\|2741875_2742178_-\|tail	phage tail protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
AYS08767.1\|2742232_2742748_-\|tail	major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
AYS08768.1\|2742757_2743930_-\|tail	major tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
AYS08769.1\|2744072_2744645_-	DNA-invertase	A0A0F7LA37	Escherichia_phage	1.4e-86	86.3
AYS08770.1\|2745322_2746438_+	glycosyltransferase	NA	NA	NA	NA
AYS08771.1\|2746518_2750175_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	1.0e-44	28.6

DBSCAN-SWA_9

3067614 : 3111317

Bacillus_virus(33.33%)

tRNA,bacteriocin,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS09058.1\|3067614_3068073_-\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYS09059.1\|3068262_3069342_-	fructose 1,6-bisphosphate aldolase	NA	NA	NA	NA
AYS09060.1\|3069443_3070607_-	phosphoglycerate kinase	NA	NA	NA	NA
AYS09061.1\|3070628_3071675_-	D-erythrose 4-phosphate dehydrogenase	NA	NA	NA	NA
AYS09062.1\|3072048_3072474_+	hypothetical protein	NA	NA	NA	NA
AYS09063.1\|3072499_3073078_+	hypothetical protein	NA	NA	NA	NA
AYS09064.1\|3073111_3073786_+	hypothetical protein	NA	NA	NA	NA
AYS09065.1\|3073767_3074451_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
AYS09066.1\|3074444_3075101_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.6e-09	28.6
AYS09067.1\|3075205_3075664_-\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYS09068.1\|3075852_3077844_-	transketolase	NA	NA	NA	NA
AYS09069.1\|3078119_3078878_+\|protease	metalloprotease	NA	NA	NA	NA
AYS09070.1\|3078978_3079899_-	agmatine ureohydrolase	NA	NA	NA	NA
AYS09071.1\|3080126_3082103_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
AYS09072.1\|3082111_3082243_-	hypothetical protein	NA	NA	NA	NA
AYS09073.1\|3082537_3082837_-	membrane protein	NA	NA	NA	NA
AYS09074.1\|3082892_3084047_+	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	1.5e-130	63.9
AYS09075.1\|3084539_3085934_+	galactose-proton symport	NA	NA	NA	NA
AYS09076.1\|3086012_3086510_+	hypothetical protein	NA	NA	NA	NA
AYS09077.1\|3086605_3087313_+	endonuclease I	NA	NA	NA	NA
AYS09078.1\|3087389_3088121_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
AYS09079.1\|3088140_3089088_+	glutathione synthetase	NA	NA	NA	NA
AYS09080.1\|3089303_3089867_+	hypothetical protein	NA	NA	NA	NA
AYS09081.1\|3089866_3090283_+	Holliday junction resolvase	NA	NA	NA	NA
AYS09082.1\|3090329_3091016_-	global regulatory protein	NA	NA	NA	NA
AYS09083.1\|3091145_3092126_-	type II secretion system ATP-binding protein	NA	NA	NA	NA
AYS09084.1\|3092143_3092848_+	hypothetical protein	NA	NA	NA	NA
AYS09085.1\|3092866_3093433_+	hypothetical protein	NA	NA	NA	NA
AYS09086.1\|3093429_3093720_+	hypothetical protein	NA	NA	NA	NA
AYS09087.1\|3093727_3094321_+	dITP/XTP pyrophosphatase	NA	NA	NA	NA
AYS09088.1\|3094313_3095450_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
AYS09089.1\|3095540_3096548_-	hypothetical protein	NA	NA	NA	NA
AYS09090.1\|3096680_3097727_-	L-asparaginase	NA	NA	NA	NA
AYS09091.1\|3098045_3098504_+\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYS09092.1\|3098626_3099346_-	hypothetical protein	NA	NA	NA	NA
AYS09093.1\|3099395_3099722_-	hypothetical protein	NA	NA	NA	NA
AYS09094.1\|3099721_3100441_-\|tRNA	tRNA m(7)G46 methyltransferase	NA	NA	NA	NA
AYS09095.1\|3100595_3101648_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
AYS09096.1\|3101675_3101951_+	oxidative damage protection protein	NA	NA	NA	NA
AYS09097.1\|3102063_3103149_+	membrane-bound lytic murein transglycosylase C	A0A0H3V0Q1	Geobacillus_virus	5.8e-12	39.0
AYS09098.1\|3103365_3104622_+	nucleoside permease	NA	NA	NA	NA
AYS09099.1\|3107232_3107940_+	hypothetical protein	NA	NA	NA	NA
AYS09100.1\|3110529_3110796_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AYS09101.1\|3111038_3111317_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

DBSCAN-SWA_10

3488420 : 3526478

Salmonella_phage(82.05%)

plate,integrase,transposase,tail,terminase,portal,capsid

attL 3483384:3483398|attR 3495550:3495564

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3483384:3483398	attL	NA	NA	NA	NA
AYS09429.1\|3488420_3490067_-	acetolactate synthase large subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	9.0e-65	31.5
AYS09430.1\|3490206_3490305_-	ilvGMEDA operon attenuator peptide	NA	NA	NA	NA
AYS09431.1\|3490560_3490890_+	hypothetical protein	NA	NA	NA	NA
AYS09432.1\|3490930_3491983_-\|integrase	bacteriophage integrase	A0A218M4I3	Erwinia_phage	3.6e-107	57.3
AYS09433.1\|3492378_3492948_-	repressor protein	A0A1S6KZZ7	Salmonella_phage	2.5e-38	43.4
AYS09434.1\|3493073_3493295_+	hypothetical protein	NA	NA	NA	NA
AYS09435.1\|3493327_3493837_+	regulatory protein cII	E5G6L3	Salmonella_phage	5.8e-87	98.8
AYS09436.1\|3494011_3494236_+	hypothetical protein	NA	NA	NA	NA
AYS09437.1\|3494258_3494600_+	hypothetical protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
AYS09438.1\|3494667_3494901_+	hypothetical protein	E5G6L6	Salmonella_phage	2.0e-31	94.8
AYS09439.1\|3494900_3495128_+	hypothetical protein	E5G6L7	Salmonella_phage	2.7e-36	100.0
AYS09440.1\|3495124_3495982_+	DNA adenine methylase	E5G6L8	Salmonella_phage	3.5e-161	97.2
3495550:3495564	attR	NA	NA	NA	NA
AYS09441.1\|3495978_3498393_+	endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
AYS09442.1\|3498546_3498735_+	hypothetical protein	E5G6M0	Salmonella_phage	7.9e-26	95.2
AYS09443.1\|3500702_3501617_+	hypothetical protein	NA	NA	NA	NA
AYS09444.1\|3501613_3502354_+	hypothetical protein	NA	NA	NA	NA
AYS09445.1\|3502388_3503426_-\|capsid,portal	capsid portal protein	A0A1S6KZW5	Salmonella_phage	1.3e-173	89.5
AYS09446.1\|3503425_3505192_-\|terminase	terminase subunit	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
AYS09447.1\|3505334_3506168_+\|capsid	capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.5e-121	90.6
AYS09448.1\|3506184_3507243_+\|capsid	major capsid protein	E5G6M6	Salmonella_phage	1.4e-180	93.1
AYS09449.1\|3507246_3507897_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
AYS09450.1\|3507929_3508457_+\|capsid	capsid completion protein	A0A1S6KZW8	Salmonella_phage	2.1e-76	89.0
AYS09451.1\|3508456_3508660_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.4e-31	92.5
AYS09452.1\|3508663_3508879_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
AYS09453.1\|3508898_3509372_+	lysozyme	E5G6N1	Salmonella_phage	3.7e-80	91.0
AYS09454.1\|3509373_3509751_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.3e-16	40.0
AYS09455.1\|3509747_3510176_+	regulatory protein	E5G6N2	Salmonella_phage	2.2e-47	77.3
AYS09456.1\|3510271_3510703_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.5e-72	95.1
AYS09457.1\|3510695_3511142_+\|tail	phage tail protein	A0A1S6L001	Salmonella_phage	6.6e-63	85.6
AYS09458.1\|3511210_3511789_+\|plate	phage baseplate assembly protein	A0A1S6KZX7	Salmonella_phage	5.5e-94	86.5
AYS09459.1\|3511785_3512145_+\|plate	phage baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	6.1e-51	84.9
AYS09460.1\|3512131_3513040_+\|plate	phage baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	1.3e-142	89.7
AYS09461.1\|3513032_3513638_+\|tail	phage tail protein	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
AYS09462.1\|3513634_3515149_+\|tail	variable tail fiber protein	M1TAS6	Escherichia_phage	6.8e-200	73.2
AYS09463.1\|3515148_3515742_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	9.2e-60	64.3
AYS09464.1\|3515713_3516154_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	3.1e-52	68.0
AYS09465.1\|3516576_3517149_+	DNA-invertase	A0A0F7LA37	Escherichia_phage	1.4e-86	86.3
AYS09466.1\|3517291_3518464_+\|tail	bacteriophage major tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
AYS09467.1\|3518473_3518989_+\|tail	major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
AYS09468.1\|3519043_3519346_+\|tail	phage tail protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
AYS09469.1\|3519360_3519480_+	bacteriophage protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
AYS09470.1\|3519472_3522550_+\|tail	bacteriophage tail protein	E5G6Q1	Salmonella_phage	0.0e+00	63.0
AYS09471.1\|3522546_3523032_+\|tail	bacteriophage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
AYS09472.1\|3523028_3524129_+	hypothetical protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
AYS09473.1\|3524219_3524438_+	hypothetical protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
AYS09474.1\|3526019_3526478_+\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA

DBSCAN-SWA_11

4442171 : 4516518

Salmonella_phage(82.98%)

plate,integrase,tail,terminase,portal,capsid

attL 4503669:4503685|attR 4516677:4516693

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS10245.1\|4442171_4444121_+	hypothetical protein	A0A2K9V411	Faecalibacterium_phage	5.9e-31	38.3
AYS10246.1\|4444192_4445101_+	hypothetical protein	NA	NA	NA	NA
AYS10247.1\|4445174_4446074_+	hypothetical protein	NA	NA	NA	NA
AYS10248.1\|4446115_4446475_+	hypothetical protein	NA	NA	NA	NA
AYS10249.1\|4446574_4446844_-	hypothetical protein	NA	NA	NA	NA
AYS10250.1\|4446975_4448250_-	UV protection protein	F1C5A5	Cronobacter_phage	7.5e-152	62.0
AYS10251.1\|4448469_4448847_+	hypothetical protein	NA	NA	NA	NA
AYS10252.1\|4448933_4449152_-	hypothetical protein	E5G6Q4	Salmonella_phage	4.9e-27	75.0
AYS10253.1\|4449219_4450320_-	hypothetical protein	E5G6Q3	Salmonella_phage	7.9e-190	92.1
AYS10254.1\|4450316_4450802_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	9.4e-71	93.2
AYS10255.1\|4450801_4453582_-	hypothetical protein	A0A2H4JGB2	uncultured_Caudovirales_phage	3.5e-125	41.1
AYS10256.1\|4453574_4453694_-	bacteriophage protein	E5G6Q0	Salmonella_phage	1.2e-14	94.9
AYS10257.1\|4453708_4454011_-\|tail	phage tail protein	E5G6P9	Salmonella_phage	3.3e-42	93.9
AYS10258.1\|4454065_4454581_-\|tail	major tail tube protein	E5G6P8	Salmonella_phage	2.7e-92	99.4
AYS10259.1\|4454590_4455763_-\|tail	major tail sheath protein	A0A1S6KZY7	Salmonella_phage	9.8e-223	99.5
AYS10260.1\|4456297_4457020_+	invasion-associated secreted protein	NA	NA	NA	NA
AYS10261.1\|4457217_4457625_-\|tail	phage tail fiber protein	A0A1B0V844	Salmonella_phage	4.1e-59	84.2
AYS10262.1\|4457631_4459251_-\|tail	phage tail fiber protein	E5G6P0	Salmonella_phage	2.7e-154	90.9
AYS10263.1\|4459247_4459853_-\|tail	phage tail protein	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
AYS10264.1\|4459845_4460754_-\|plate	phage baseplate assembly protein	E5G6N8	Salmonella_phage	5.2e-155	97.0
AYS10265.1\|4460740_4461100_-\|plate	phage baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	6.8e-58	96.6
AYS10266.1\|4461096_4461675_-\|plate	phage baseplate assembly protein	E5G6N6	Salmonella_phage	3.9e-108	99.5
AYS10267.1\|4461743_4462190_-\|tail	phage tail completion protein	A0A1S6L001	Salmonella_phage	2.2e-66	90.4
AYS10268.1\|4462182_4462614_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	2.5e-75	98.6
AYS10269.1\|4462709_4463135_-	regulatory protein	A0A1S6KZX8	Salmonella_phage	2.5e-67	97.9
AYS10270.1\|4463134_4463512_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.5e-60	99.2
AYS10271.1\|4463516_4463987_-	lysozyme	A0A1S6KZY9	Salmonella_phage	1.0e-85	97.4
AYS10272.1\|4464006_4464222_-	hypothetical protein	E5G6N0	Salmonella_phage	3.8e-32	98.6
AYS10273.1\|4464225_4464429_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	3.8e-34	100.0
AYS10274.1\|4464428_4464893_-\|capsid	capsid completion protein	A0A1S6KZW8	Salmonella_phage	2.4e-84	98.1
AYS10275.1\|4464986_4465637_-\|terminase	phage terminase	E5G6M7	Salmonella_phage	2.4e-114	99.5
AYS10276.1\|4465640_4466705_-\|capsid	major capsid protein	A0A1S6KZZ3	Salmonella_phage	1.3e-194	98.3
AYS10277.1\|4466721_4467555_-\|capsid	capsid scaffolding protein	E5G6M5	Salmonella_phage	6.1e-126	87.4
AYS10278.1\|4467697_4469464_+\|terminase	terminase subunit	A0A1S6KZW3	Salmonella_phage	0.0e+00	96.4
AYS10279.1\|4469460_4470507_+\|capsid,portal	capsid portal protein	A0A1S6KZW5	Salmonella_phage	2.1e-176	86.6
AYS10280.1\|4470555_4471251_-	hypothetical protein	NA	NA	NA	NA
AYS10281.1\|4471270_4472335_-	hypothetical protein	NA	NA	NA	NA
AYS10282.1\|4472331_4473396_-	hypothetical protein	NA	NA	NA	NA
AYS10283.1\|4474320_4474650_-	hypothetical protein	A0A1S6L028	Salmonella_phage	6.2e-50	90.8
AYS10284.1\|4474646_4476716_-	bacteriophage replication protein A	A0A1S6L028	Salmonella_phage	0.0e+00	95.9
AYS10285.1\|4476706_4477567_-	DNA adenine methylase	E5G6L8	Salmonella_phage	3.4e-132	81.8
AYS10286.1\|4477563_4478148_-	exonuclease	A0A1S6L012	Salmonella_phage	1.1e-76	73.7
AYS10287.1\|4478144_4478372_-	hypothetical protein	A0A1S6L007	Salmonella_phage	1.0e-35	94.7
AYS10288.1\|4478371_4478605_-	hypothetical protein	A0A1S6L021	Salmonella_phage	9.8e-26	84.4
AYS10289.1\|4478672_4479014_-	hypothetical protein	A0A1S6L019	Salmonella_phage	4.6e-56	99.1
AYS10290.1\|4478977_4479178_-	hypothetical protein	A0A1S6L005	Salmonella_phage	4.6e-32	97.0
AYS10291.1\|4479185_4479695_-	phage regulatory protein	A0A1S6L008	Salmonella_phage	1.3e-83	94.1
AYS10292.1\|4479727_4479970_-	phage regulatory protein	A0A1S6KZZ6	Salmonella_phage	2.3e-38	98.8
AYS10293.1\|4480086_4480719_+	phage repressor protein cI	A0A1S6KZZ7	Salmonella_phage	1.4e-66	58.6
AYS10294.1\|4480722_4481748_+\|integrase	phage integrase	A0A1S6L016	Salmonella_phage	2.7e-200	98.2
AYS10295.1\|4481854_4482208_-	protein samA'	I6S1S3	Salmonella_phage	6.7e-10	59.3
AYS10296.1\|4482824_4483112_+	hypothetical protein	NA	NA	NA	NA
AYS10297.1\|4483122_4484013_+	methyltransferase	NA	NA	NA	NA
AYS10298.1\|4484012_4484759_+	hypothetical protein	NA	NA	NA	NA
AYS10299.1\|4485060_4487031_-	Vi polysaccharide exporter protein	NA	NA	NA	NA
AYS10300.1\|4487050_4488355_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA
AYS10301.1\|4488377_4489073_-	Vi polysaccharide exporter ATP-binding protein	NA	NA	NA	NA
AYS10302.1\|4489098_4489893_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA
AYS10303.1\|4489902_4490970_-	Vi polysaccharide exporter protein	NA	NA	NA	NA
AYS10304.1\|4491014_4492748_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA
AYS10305.1\|4492747_4495243_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA
AYS10306.1\|4495266_4496313_-	Vi polysaccharide biosynthesis epimerase	A0A2K9L0I7	Tupanvirus	1.4e-74	45.0
AYS10307.1\|4496315_4497593_-	Vi polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase	M1HYW7	Paramecium_bursaria_Chlorella_virus	1.3e-21	26.7
AYS10308.1\|4497837_4498377_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA
AYS10309.1\|4499230_4500742_+	DNA helicase	A0A126DN25	Acinetobacter_phage	2.0e-42	29.0
AYS10310.1\|4500725_4502315_+	hypothetical protein	NA	NA	NA	NA
AYS10311.1\|4502478_4503492_+\|integrase	phage integrase	NA	NA	NA	NA
4503669:4503685	attL	NA	NA	NA	NA
AYS10312.1\|4503918_4504212_+	hypothetical protein	NA	NA	NA	NA
AYS10313.1\|4504208_4504697_+	hypothetical protein	NA	NA	NA	NA
AYS10314.1\|4504876_4505329_-	hypothetical protein	NA	NA	NA	NA
AYS10315.1\|4510551_4511013_+	hypothetical protein	NA	NA	NA	NA
AYS10316.1\|4511009_4511231_+	transcriptional regulator	A0A2I7S995	Vibrio_phage	4.6e-17	58.3
AYS10317.1\|4512087_4512870_+	hypothetical protein	NA	NA	NA	NA
AYS10318.1\|4513496_4513721_-	hypothetical protein	NA	NA	NA	NA
AYS10319.1\|4513850_4514948_-	SH3 domain-containing protein	NA	NA	NA	NA
AYS10320.1\|4515258_4516518_-\|integrase	bacteriophage integrase	B7SYF8	Stenotrophomonas_phage	3.2e-78	41.7
4516677:4516693	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4658770 : 4669029

Enterobacteria_phage(77.78%)

capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS10457.1\|4658770_4659847_-	protein kinase	A0A2H4UU60	Bodo_saltans_virus	7.8e-17	28.2
AYS10458.1\|4659843_4660917_-	protein kinase	G9BWE0	Planktothrix_phage	6.5e-56	44.7
AYS10459.1\|4660891_4662055_-	hypothetical protein	NA	NA	NA	NA
AYS10460.1\|4662330_4662897_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.8e-60	64.9
AYS10461.1\|4662912_4663152_-	hypothetical protein	Q7M294	Enterobacteria_phage	3.7e-20	60.5
AYS10462.1\|4663155_4664016_-\|capsid	phage capsid protein	NA	NA	NA	NA
AYS10463.1\|4664438_4664762_+	phage DNA binding protein	Q7M299	Enterobacteria_phage	3.6e-26	70.0
AYS10464.1\|4664745_4665246_+	hypothetical protein	Q7M2A7	Enterobacteria_phage	9.8e-31	70.4
AYS10465.1\|4665242_4665470_+	hypothetical protein	NA	NA	NA	NA
AYS10466.1\|4665466_4665787_+	P4 phage protein	NA	NA	NA	NA
AYS10467.1\|4665801_4666476_+	bacteriophage P4 DNA primase	Q7M2A8	Enterobacteria_phage	1.4e-85	75.1
AYS10468.1\|4666472_4668134_+	hypothetical protein	Q7M2A8	Enterobacteria_phage	1.9e-296	90.2
AYS10469.1\|4668870_4669029_+	recombinase	Q7M297	Enterobacteria_phage	3.9e-10	57.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP029931

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP029931_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029931_1

27611-27768

Orphan

Consensus_repeat	Method
CCGTACCCGGTATAGTGGAT	PILER-CR

2 spacers

The CRISPR arrays of CP029931_1

>merge|CP029931|1|27611-27768|PILER-CR
CCGTACCCGGTATAGTGGATGAGAACTACTGCTAATCGGTTACCGGGAATGTGGTGGTACTGGGTGGAAAGGTTTACCCGGTATAGTGGATCGTGGCAGTGTCATCTTTCCGGATAGCATGACGTCACGGTTAGGAAACCGTACCCGGTATAGTGGAT

>CP029931|1|1|27611-27768|PILER-CR
CCGTACCCGGTATAGTGGAT	GAGAACTACTGCTAATCGGTTACCGGGAATGTGGTGGTACTGGGTGGAAAG
GTTTACCCGGTATAGTGGAT	CGTGGCAGTGTCATCTTTCCGGATAGCATGACGTCACGGTTAGGAAA
CCGTACCCGGTATAGTGGAT

Protein	Signature genes	Signature genes Name	Protein_function
CP029931.1\|AYS10601.1\|37616_38324_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|199908
CP029931.1\|AYS10604.1\|41278_41860_-\|hypothetical-protein	unknown	unknown	unknown
CP029931.1\|AYS10590.1\|21845_24230_-\|periplasmic-protein	unknown	unknown	gnl\|CDD\|372704
CP029931.1\|AYS10600.1\|36512_37334_-\|hypothetical-protein	unknown	unknown	unknown
CP029931.1\|AYS10602.1\|38538_39615_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|272946
CP029931.1\|AYS10588.1\|20608_21307_+\|hypothetical-protein	unknown	unknown	unknown
CP029931.1\|AYS10589.1\|21461_21758_-\|hypothetical-protein	unknown	unknown	unknown
CP029931.1\|AYS10587.1\|20111_20375_+\|hypothetical-protein	unknown	unknown	unknown
CP029931.1\|AYS10586.1\|19669_20011_+\|hypothetical-protein	unknown	unknown	unknown
CP029931.1\|AYS10597.1\|32216_33971_-\|DNA-restriction-methylase	unknown	unknown	gnl\|CDD\|372683
CP029931.1\|AYS10595.1\|27957_28473_-\|hypothetical-protein	unknown	unknown	unknown
CP029931.1\|AYS10598.1\|34156_35314_-\|hypothetical-protein	unknown	unknown	unknown
CP029931.1\|AYS10596.1\|29123_31580_-\|periplasmic-protein	unknown	unknown	gnl\|CDD\|372704
CP029931.1\|AYS10594.1\|26490_27372_+\|replication-protein	unknown	unknown	gnl\|CDD\|374546
CP029931.1\|AYS10603.1\|40149_41025_+\|replication-initiation-protein	unknown	unknown	unknown
CP029931.1\|AYS10592.1\|25201_25498_+\|hypothetical-protein	unknown	unknown	unknown
CP029931.1\|AYS10585.1\|18704_19481_+\|hypothetical-protein	unknown	unknown	unknown
CP029931.1\|AYS10593.1\|25502_26099_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372704
CP029931.1\|AYS10599.1\|35673_36498_+\|DNA-modification-methylase	unknown	unknown	gnl\|CDD\|273146
CP029931.1\|AYS10591.1\|24480_25089_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372706

Protein	Function_ID	Function_description	E-value
CP029931.1\|AYS10596.1\|29123_31580_-\|periplasmic-protein	gnl\|CDD\|372704	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.	9.32876e-65
CP029931.1\|AYS10601.1\|37616_38324_-\|hypothetical-protein	gnl\|CDD\|199908	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40. Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding.	0.000379412
CP029931.1\|AYS10594.1\|26490_27372_+\|replication-protein	gnl\|CDD\|374546	pfam16441, DUF5038, Domain of unknown function (DUF5038). This family consists of several uncharacterized proteins around 200 residues in length and is mainly found in various Clostridiales species. The function of this family is unknown.	0.000541832
CP029931.1\|AYS10590.1\|21845_24230_-\|periplasmic-protein	gnl\|CDD\|372704	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.	2.26735e-68
CP029931.1\|AYS10597.1\|32216_33971_-\|DNA-restriction-methylase	gnl\|CDD\|372683	pfam13708, DUF4942, Domain of unknown function (DUF4942). The function of this family is not known.	2.90653e-16
CP029931.1\|AYS10593.1\|25502_26099_+\|hypothetical-protein	gnl\|CDD\|372704	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3). This family consists of bacterial domains with an Ig-like fold. Members of this family are found in a variety of bacterial surface proteins.	1.23519e-43
CP029931.1\|AYS10602.1\|38538_39615_-\|hypothetical-protein	gnl\|CDD\|272946	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein. This model represents the most well-conserved core of a set of chromosomal and plasmid partition proteins related to ParB, including Spo0J, RepB, and SopB. Spo0J has been shown to bind a specific DNA sequence that, when introduced into a plasmid, can serve as partition site. Study of RepB, which has nicking-closing activity, suggests that it forms a transient protein-DNA covalent intermediate during the strand transfer reaction.	0.00163255
CP029931.1\|AYS10599.1\|35673_36498_+\|DNA-modification-methylase	gnl\|CDD\|273146	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems. [DNA metabolism, DNA replication, recombination, and repair].	7.14985e-68
CP029931.1\|AYS10591.1\|24480_25089_+\|hypothetical-protein	gnl\|CDD\|372706	pfam13752, DUF4165, Domain of unknown function (DUF4165).	1.56662e-39

>CP029931.1|AYS10594.1|26490_27372_+|replication-protein
MSSNNNKLSLVIEESLKDSGEVIQLFPTLKQTIQPKVLLRLGVFVPTLKSTDKGGRKSHHIDATEPLSRLSIVEGEGYSQIQIYGPRLDMDTDFKSWCGIVYALSNRPLDSEGQLELNFPEFAKFCGFDTKRIDKQLKERFDASLTRIARTNISFIKKIPGTDDQITINMHLVESTYYDSSTGKIIIKPNSKLNTLYRVDGKTRLYLKTLQKLARKESAQALYLYLAELPSTFYRIGFDRLRGRLQLSSHLGNQNATVKKALGQLKEIGFLEYSIDKENGDYVLNILKRNMKP
>CP029931.1|AYS10593.1|25502_26099_+|hypothetical-protein
MVYGLENIRIALADNLTTPRITRLQITGGPTADNVELTWSPAGTNVYAPEYPRLFPSFEPSENYALSVTVSDSQSNSKTYTQKFSYLPNNLVQLHNLRTLSVSSALKTSLNEPLAYLSTNVLRKSNGEIAKDVQSATLTVRKDAAFGIKFNGVQAALGESVEVKIDMGLGDNLLVPIYPAENGKVGTSEFMIQIDELK
>CP029931.1|AYS10592.1|25201_25498_+|hypothetical-protein
MTTQETPEPFRCSSFDMITIWAVRDPQSSASVVPRVSGYPAYSAGMTVNENPIHLVYRVPKSNYRSYAEGGLLFYNLYSSPTEIATDSTYTYVEMILP
>CP029931.1|AYS10591.1|24480_25089_+|hypothetical-protein
MKNQAIALAMAMLGVSVPASAQIYESIFTDTNGIEVHAPSTRLLLNPASPVTLTLIAGLDRYVNVKITSATGTQLLNTTTTRTSVSDRLKAGDGSEFYGKKVTLPVLGEGRSVVQVSILDLNQSVVATYSYNWLVDTTPLSGNALTGNAAYGSTAGSVWKMGLEATGQFDFTSTNVTDVNGIEKGMFYVYHSNGSLFSTTQM
>CP029931.1|AYS10590.1|21845_24230_-|periplasmic-protein
MKFCRRPLIVAVYTALLFPLYSQAQLYNYSYTDTRGTKVNAEPTREYLNPGSAITLNLISGLDRYERVTVTRSSDNVQMFQSVTGLVTVADRITAADGSEYYGKSMTLPVLGEGTFSLKSETLDNKSNVVATTSYSFSIDITPPVLPDPMQWIRAGFQYGSLDIFGDRTATQAISLSNVSDARSGLDKAEWFAIDSSGVRRTVNAQLNALTGVVQALAAVAAGSTVAPVSPAYYTVGFRVYDKAGNWTETSHRSGIDRTIPSYIQHQVRNAKTGVWEDYVPGMTIFENPVKFRYKRLKSDSTNFNGTDFGWVDQITNSDNTYFYTEATVSYPETYMYYELHTKAGLNVNLQYKTLKFTPGNGVAEAPRYLSGQYHFRDANTWTSSDIVRFTGPDCVDLGRVNVEPRSYVQTATIVGIGSCNVSVGESSCQVSMNYCKTSGKGYVPYQIHIRGTGSYANLGGLQSHFYTYWDMNAPVINSIVSSPLDKTVVMLVTDSDVTNDWTNYMWATNIFNLTLKDTSNKVSTLSPKNVTVLNYQLKQVTFDYSALPSGKYTATGAATDTYNNTAELTLSNTILHDVTPPVVDISFEGKQADGALVKGLENLVITLADDMTKASLKSITLSGGPTSDKVSVGWYSQGTDKYGLNYPRIFPATDDADSYQLTAVAVDEAGNTTTKVSRFRYVPNNLIEFNTLKTLAVGMGLKTSDNQPLAYLRTNSIRKKDGSLITGAQTGTLTVRKDAAFAVSMNGVAVVPGDSKDITIDFGQGDGVLIPIFPATSGNVGESSFMIELPQIQ
>CP029931.1|AYS10589.1|21461_21758_-|hypothetical-protein
MSEIAEKPLITRVAPLERIYYCASRAEGLKPDRHEIRMQSQFLLLGVIWLPPALAMAELERLLKGYDADHSRLLENVLETAHQQFLKFCEPQKREGGA
>CP029931.1|AYS10588.1|20608_21307_+|hypothetical-protein
MKNTVIPTVTENEMGEVITRHSAYGLVSVSRTSTTGQRLYASDLSHKEVVTMTFSESEQIERDGVIRHRLAEGRRRSPLLQVSLSPAQWATMITSFGMSDGVPCTINSLIRGDYERQPEIGYIESTRERYERQIREAAEREMAKLHEKLEVLRLLAVKGKAGKRELDEAYQSLLSVINNLPVNLAFTNQLIQESMVNIVSHGKAELEATAMGVAARLGMKEMSSLASLEEKK
>CP029931.1|AYS10587.1|20111_20375_+|hypothetical-protein
MTNANANDGKTSPVLPTLEQVYALLKANYKPARFADRDGEIWGHEYSWNLARSSLQDLEKYGKSYVSKHSDRMGDGFSFGPDLVIIR
>CP029931.1|AYS10586.1|19669_20011_+|hypothetical-protein
MRELLGMAGAEHQASVMYQTFGHLDAKLGEKHKGHFVFINGQHGDLCVVHSEFSSFDEGPGYFSDRADFIWELVKNDGPCSKVGIYRFDGEYALPKRRNGRRFSGSVTCLQAF
>CP029931.1|AYS10585.1|18704_19481_+|hypothetical-protein
MAKLISTRELATIITALLVKPELLGELDSPEKHRALMEDLGRVVAEHCGGNVTEIALPETDGTAAEGALQNGQPVRYLETKESSPYLIVHPDASLPSVTQNVWMHADPDGWEEHFNGETDALTPEMSEQFRQQVYALLTPESHTTSSEMRLTLQDWQLGEAEIPEEDCQPYQVKVLAENKNVQCEVTNETGTTCFGLILEIDRGVPTLHIDTGSDSLLHIHAAHDGLVLTPDAPSHGFEDAPVDRFSYNSPSLLVPGV
>CP029931.1|AYS10595.1|27957_28473_-|hypothetical-protein
MKISTGMMKSNAPLIILICLMIAFSAYVKSWSLLYTLLAASVSLTVMISLPFIVSPLQHSKFIALRILRLLVITLWTIGLVGVFFSVVERLVWVNADSYPAWLAKELDSPAITDGENFIKATESFEKICGKNKGYLSVVTKHNGIFMRCDDSLSFDSWWKGVYRLKTPETR
>CP029931.1|AYS10596.1|29123_31580_-|periplasmic-protein
MRKILTGCIIATAIASVYPAAAQIFSYSYTDTNQLAKTLKPATQSYLNPASTMTLNLISGLDRYERVSVTRDSDKKVMYSAVTGKISVADRIVAADGTEYYGKDLALPALGEGAFTVINDTLDLQQAVVSSSTYHFTIDTTAPKYTSIYPSQNAGYEMVLSGPVWGLGRGGSGQFSIFADGVDDANGIDKIRLVIKRGNGTVVSDNTLSYDTAAKRAFYPWIKDSVTQPGMPTSDLNEEFTFNFIITDKAGNTLNIPPQRFLFDDQIGEYTPFAVHDSRVSTSVVPGISSGYVPFVRGLSVLENPYRMVIRIPRTNWKPYRNGGITILNNYGGAKVISEDTTYVYVEVKLPQGALDINYYRPVNTYQWSGGDLTQYASWLNWDPASVKSPAWGSPAIERQMSDGTWFNSVNWKYFKASDMPVNLTQIRFNVQARPYDQKITGGATCNIPAGSTSCTVALTQAITNGTTGYLHSGYEVRSTTESTFFMPIWENVVWHTLGPSVTGYDYNDTTNILQVYINQPGDGSYFDTVKLSRVWLSDKSRNNADINVTGTLTGRNTATGNYTYEFNLKLIPEGSYNVQLNAQDSFNNTGSLDYKTVTVDNTPPSISISYETKPITSSVTVYGLENIRIQLADTLTKPSLTRMTLRGGPVSDAVELSWVNLGNNLYAPNYPKIFPSLNDGETYTLTVQAKDEMNNVKESAVEFSYLPNNLVRLENLKTISVSTALKTSDDTPLAVLYASQLRKKDGSIATGKQDAILTVRKDAAFGVTVNGVSAAPGESKNVQLDLGLGDSRSFPIFPSTSGVVGTSEFMLNIEELK
>CP029931.1|AYS10597.1|32216_33971_-|DNA-restriction-methylase
MSANLLAFCSRLLSWYQINPSKRTGAMSAVESDSLPMGAPGSSLVAYMPHTGLLINDDNFLPEMREELDVINRQVESYNDELSLLRSMSAQFLKCGNQKLYSYLSGYNHLISEADASYAENALRSEYWKRVMALTDVLSVMSDEKKKEWDKQFTADRYHLPPQEIPDFTLDAVVTTVVALLNDRHQFIKDRVYAVFQSLSRQHKTNKAFGFSTRMITSGVCEGVKDKWVKLKVEFKESGLMPLSELRVICSYFRGETVKPVYDTKKMVENMVGHVGFRNWISLDGNSIRFRVYKNGSMHIDVHPDIAERLNNILAAIVPLALPAERVAHTKATLQEFPALKRCIDFHSRMQLAELDFTQNEKEWSSWTSLGYAGENADKTRQVNADVLRFLGARVTSYHVTFDYDPTEVMRFIGHMGAMPDIKSHQFYPSSARLSEYVASIIAAGEGERLLEPNIGHGDLLQCFPKSVNVTGIELDTLNCLVSRAKGYETTEADFLAWSAANQIQKFDCVVMNPPFADNRAKLHLLAAASHLVPGGRLAAVLPLSLQGIDNLLGEGFRTEWMDTFDNEFDNTAVSVRVLYAERF
>CP029931.1|AYS10598.1|34156_35314_-|hypothetical-protein
MSDLMTDSQQQTNSRVFKSPLVSFSTVTGSGRFVSGMKQFRDANPDLCNEVTEQKAWAISPTVVQITEGFNSREMGMGEAYYQLPEVADHLNNIKNAYIRGDYVDPIRVLIKDGIPYVRQGHCRLKAALMAVAEGHSNLTILCIEMKADEISCELTTIDGNRGLALSPVALGESYRRLQALGGWSLDRIAEREGKSNTTIAALIRLTGCCVYLKKLIHADAISYVAVLSLIDEFGETEAVARIEKMIADLEKADSSGIQIKKTPRGQIRVVPSDFKPARVPPVLATKAVEGVKLITTSLLQKLGDIELPEVTDSSEDEEITFTLNRSMLEMLKNLQSEITESENKQLRRAENRQARLKGEKVTYKTKKNDKNGGEPQSETPPAQA
>CP029931.1|AYS10599.1|35673_36498_+|DNA-modification-methylase
MRKHTPIIKWAGGKTKLMPFLSKHFPHDKSRRWVEPFIGGGAVFLNMFATEALLADSNPDLINLYRNIQRNKPAFIREVQLLAERHFEEEDYYVLRNTFNSTSFDDAPLQRAAIFYAMNRLGYNGLCRYNLKRKFSVPWGKRYQFSLDIQKVDYLSFRLSSVELKTADFGQTLEFAGGGDQIYCDPPYDKISKTSFVSYDGIPFDKSAHVKLADMLVDANRKGASVAISNSMTPFTLELYEERGFDIHTHNAYRSVGSQSKSRKKEIEILAVLR
>CP029931.1|AYS10600.1|36512_37334_-|hypothetical-protein
MQNDLGLGFIRKSARTSAKIISRKVTFPLDDLDNAKLTLTGLQCHPSCRFPFYQLSMLIHNQLAEHGVISADENAPFTVSISIHEWLSRARVAFIDYHGLRNSDKTVMITRAHLEELLTYLSTTLAVYVPYSKKRLNFSFLTSFTLVKTSQSYTLTFPGVLRPFLMLLGGLIQEFMTEKLLKRRNAQFVIFDYLRKSRRHSHKITDIVNDLQLHTVNVRIMNVLTQLADQGFISFICEGKRGERSIEELQFIPYASRDHSEVLSFEEWISPID
>CP029931.1|AYS10601.1|37616_38324_-|hypothetical-protein
MKHSLFFTQDGYLLPSSVKPIYGKDGHYYAVITRECFECGGTGKIANAVCVTCNGSKTSPATEEKLVLKECIEFLETIPELRCNPDLEAWKRRHSEQLALLQADNSKFAASIAQQLNNNLFLTVRQLESFYSTYQPVSEAFSENAGFPIEHSFNIGDVVSFDIIFTEVRAAFSKGSHSYFFTFTGKKQNDGFALTGNVQDHVLLGHSYHLSGKVRKIHYFDSVPYALLTVFKLTA
>CP029931.1|AYS10602.1|38538_39615_-|hypothetical-protein
MNHCDYQIIEISPKALFIESGFNPREAVIGELCYEQEPVKSTIVSIKQAYKEGRRVDLIKVVKKDSNYVVRQGHCRYRALSLALAEGADIQLISVVVMNYKNKSEEYLENLDGNRNNGLNPVALAYALAEALKLGSTVESLAMRYQRSSTAIRNQLKILDMPLELQRLISLNLIKKTLAIEIMLKYSNDHAKVLAHLESCSLLVPSTEPEPVLSKTSSVQTSSNDEKLDNPETLPVHVIPKEVKTKSITRSSLGIKRLSHKKTERLKTEFIGLIDTVRPALNDSNKLTELIFDGQHSNLFTNISSTSITKTTESVKITLDEAKLQLLLSLLNDENTAIIIPKSKVTELHEIRDLLTSE
>CP029931.1|AYS10603.1|40149_41025_+|replication-initiation-protein
MSDNNEVTHPFDVTNTETGKTYQLSPNSSKSVQPIALLRLSVFTPVGTKEKRYRNFEVDASDELSSMELARSEGYDDIRITGLKLSMSTDFKCWLGCIMAFSKYGFASDKITLSFNEFAKMCGISSTNINKRTRSRFQEALANLASVVISFRDSKTERFTVTHLVQKAVIDPKKDTVELVGDPSMWELYRYDHKTLLSLQVLSVLAKKEAAQSLYIYFEAMPAGTLFVSMKRLRERLLLTTPVRTQNQIIRKAMLELKSIGYLEYQEVKKGRDIQFQIFKRSPKLALAKHS
>CP029931.1|AYS10604.1|41278_41860_-|hypothetical-protein
MQMLFKQRHLSGTHSCKCFPTKGNLHFPIHSNAFRPKATCILLFVQMLFEQRHLTLSLASPASRPKATFTAAFIQMLFSKGTFLPPLKQMLLYKRHFSAAIGANAFIQKALFCSPLKQMLFISLISNLSNFHLLSECYVISLGPSLACIFIKCRRPGSYPSRLQALRNCKYAEWHKEYRDLRLKPNTTRWRVV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_LT904879	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2	81476-81526	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_KX129784	Escherichia coli strain H226B plasmid pH226B, complete sequence	182983-183033	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NC_009981	Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence	180762-180812	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029645	Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence	27631-27681	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029729	Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence	96276-96326	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP053721	Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence	235796-235846	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP026790	Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence	42635-42685	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP039717	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence	152742-152792	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	KP899804	Salmonella enterica strain F8475 plasmid pF8475, complete sequence	142863-142913	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	KP899805	Salmonella enterica strain 109/9 plasmid p109/9, complete sequence	133710-133760	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	KP899806	Salmonella enterica strain B71 plasmid pB71, complete sequence	117174-117224	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP037875	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence	192529-192579	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP018652	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence	11544-11594	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	MN232190	Escherichia coli plasmid pGD27-31, complete sequence	77135-77185	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP044299	Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence	247816-247866	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029690	Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence	175824-175874	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NC_003384	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence	29608-29658	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP030182	Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence	195030-195080	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP049354	Escherichia coli strain T28R plasmid pT28R-1, complete sequence	160405-160455	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP023167	Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence	229056-229106	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	AP020333	Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome	1240-1290	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP039559	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence	150895-150945	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP037911	Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence	222888-222938	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP046717	Escherichia coli strain T16R plasmid pT16R-1, complete sequence	157698-157748	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	MN256758	Escherichia coli strain 4M8F plasmid p4M8F, complete sequence	163625-163675	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	MN256759	Escherichia coli strain 4M9F plasmid p4M9F, complete sequence	139403-139453	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP046007	Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence	103197-103247	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NC_002305	Salmonella typhi plasmid R27, complete sequence	54047-54097	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP046004	Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence	156262-156312	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP024236	Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence	114948-114998	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029895	Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence	27631-27681	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029877	Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence	27631-27681	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP033094	Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence	99282-99332	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	LT905061	Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2	190141-190191	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029926	Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence	186842-186892	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029947	Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence	27631-27681	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP044968	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence	163174-163224	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP044958	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence	95412-95462	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029943	Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence	27631-27681	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029953	Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence	27631-27681	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029955	Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence	27631-27681	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP022495	Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence	154888-154938	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP016184	Escherichia coli strain EC2 plasmid pEC2-4, complete sequence	135342-135392	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP016183	Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence	101555-101605	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029924	Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence	111577-111627	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029934	Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence	27631-27681	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	MN256757	Escherichia coli strain 4M18F plasmid p4M18F, complete sequence	163625-163675	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NC_013365	Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence	192086-192136	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP041449	Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence	157699-157749	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029939	Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence	27631-27681	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029957	Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence	27631-27681	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029941	Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence	27631-27681	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029910	Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence	27631-27681	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029887	Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence	27631-27681	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029948	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence	27631-27681	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029937	Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence	27631-27681	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029879	Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence	27631-27681	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP018656	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence	237889-237939	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NC_016825	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence	79517-79567	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029931	Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence	27631-27681	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_CP029935	Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence	27631-27681	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_LT985296	Escherichia coli strain 1454 plasmid RCS78_p, complete sequence	106159-106209	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_MN101858	Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence	267735-267785	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_MN101856	Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence	173816-173866	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_MH733010	Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence	95376-95426	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	MT219825	Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence	230101-230151	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_MG904992	Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence	20571-20621	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NZ_MG948335	Escherichia coli strain 3498 plasmid p3498, complete sequence	1141-1191	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NC_023277	Escherichia coli strain 63743 plasmid pEQ2, complete sequence	259337-259387	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	NC_023289	Escherichia coli strain T23 plasmid pEQ1, complete sequence	210872-210922	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	MT219824	Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence	110178-110228	1.0
CP029931_1	1.1\|27631\|51\|CP029931\|PILER-CR	27631-27681	51	MG874042	Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence	111658-111708	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP026790	Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence	42568-42614	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP039717	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence	152675-152721	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	KP899804	Salmonella enterica strain F8475 plasmid pF8475, complete sequence	142796-142842	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	KP899805	Salmonella enterica strain 109/9 plasmid p109/9, complete sequence	133643-133689	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	KP899806	Salmonella enterica strain B71 plasmid pB71, complete sequence	117107-117153	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP037875	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence	192462-192508	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP018652	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence	11477-11523	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP039559	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence	150828-150874	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	MN256758	Escherichia coli strain 4M8F plasmid p4M8F, complete sequence	163558-163604	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	MN256759	Escherichia coli strain 4M9F plasmid p4M9F, complete sequence	139336-139382	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP046007	Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence	103130-103176	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NC_002305	Salmonella typhi plasmid R27, complete sequence	53980-54026	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	LT905061	Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2	190074-190120	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP022495	Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence	154821-154867	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP016184	Escherichia coli strain EC2 plasmid pEC2-4, complete sequence	135275-135321	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP016183	Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence	101488-101534	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	MN256757	Escherichia coli strain 4M18F plasmid p4M18F, complete sequence	163558-163604	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NC_016825	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence	79450-79496	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	MT219825	Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence	230034-230080	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	MT219824	Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence	110111-110157	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_LT904879	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2	81547-81593	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_KX129784	Escherichia coli strain H226B plasmid pH226B, complete sequence	183054-183100	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NC_009981	Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence	180833-180879	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029645	Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence	27702-27748	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029729	Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence	96347-96393	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP053721	Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence	235867-235913	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	MN232190	Escherichia coli plasmid pGD27-31, complete sequence	77206-77252	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP044299	Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence	247887-247933	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029690	Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence	175895-175941	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NC_003384	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence	29679-29725	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP030182	Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence	195101-195147	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP049354	Escherichia coli strain T28R plasmid pT28R-1, complete sequence	160476-160522	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP023167	Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence	229127-229173	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	AP020333	Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome	1311-1357	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP037911	Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence	222959-223005	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP046717	Escherichia coli strain T16R plasmid pT16R-1, complete sequence	157769-157815	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP046004	Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence	156333-156379	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP024236	Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence	115019-115065	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029895	Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence	27702-27748	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029877	Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence	27702-27748	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP033094	Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence	99353-99399	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029926	Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence	186913-186959	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029947	Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence	27702-27748	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP044968	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence	163245-163291	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP044958	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence	95483-95529	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029943	Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence	27702-27748	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029953	Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence	27702-27748	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029955	Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence	27702-27748	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029924	Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence	111648-111694	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029934	Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence	27702-27748	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NC_013365	Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence	192157-192203	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP041449	Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence	157770-157816	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029939	Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence	27702-27748	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029957	Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence	27702-27748	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029941	Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence	27702-27748	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029910	Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence	27702-27748	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029887	Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence	27702-27748	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029948	Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence	27702-27748	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029937	Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence	27702-27748	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029879	Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence	27702-27748	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP018656	Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence	237960-238006	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029931	Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence	27702-27748	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_CP029935	Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence	27702-27748	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_LT985296	Escherichia coli strain 1454 plasmid RCS78_p, complete sequence	106230-106276	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_MN101858	Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence	267806-267852	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_MN101856	Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence	173887-173933	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_MH733010	Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence	95447-95493	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_MG904992	Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence	20642-20688	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NZ_MG948335	Escherichia coli strain 3498 plasmid p3498, complete sequence	1212-1258	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NC_023277	Escherichia coli strain 63743 plasmid pEQ2, complete sequence	259408-259454	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	NC_023289	Escherichia coli strain T23 plasmid pEQ1, complete sequence	210943-210989	1.0
CP029931_1	1.2\|27702\|47\|CP029931\|PILER-CR	27702-27748	47	MG874042	Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence	111729-111775	1.0

1. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_LT904879 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

2. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_KX129784 (Escherichia coli strain H226B plasmid pH226B, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

3. spacer 1.1|27631|51|CP029931|PILER-CR matches to NC_009981 (Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

4. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029645 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

5. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029729 (Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

6. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP053721 (Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

7. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP026790 (Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

8. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP039717 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

9. spacer 1.1|27631|51|CP029931|PILER-CR matches to KP899804 (Salmonella enterica strain F8475 plasmid pF8475, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

10. spacer 1.1|27631|51|CP029931|PILER-CR matches to KP899805 (Salmonella enterica strain 109/9 plasmid p109/9, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

11. spacer 1.1|27631|51|CP029931|PILER-CR matches to KP899806 (Salmonella enterica strain B71 plasmid pB71, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

12. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP037875 (Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

13. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP018652 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

14. spacer 1.1|27631|51|CP029931|PILER-CR matches to MN232190 (Escherichia coli plasmid pGD27-31, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

15. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP044299 (Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

16. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029690 (Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

17. spacer 1.1|27631|51|CP029931|PILER-CR matches to NC_003384 (Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

18. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP030182 (Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

19. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP049354 (Escherichia coli strain T28R plasmid pT28R-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

20. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP023167 (Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

21. spacer 1.1|27631|51|CP029931|PILER-CR matches to AP020333 (Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

22. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP039559 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

23. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP037911 (Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

24. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP046717 (Escherichia coli strain T16R plasmid pT16R-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

25. spacer 1.1|27631|51|CP029931|PILER-CR matches to MN256758 (Escherichia coli strain 4M8F plasmid p4M8F, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

26. spacer 1.1|27631|51|CP029931|PILER-CR matches to MN256759 (Escherichia coli strain 4M9F plasmid p4M9F, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

27. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP046007 (Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

28. spacer 1.1|27631|51|CP029931|PILER-CR matches to NC_002305 (Salmonella typhi plasmid R27, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

29. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP046004 (Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

30. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP024236 (Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

31. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029895 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

32. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029877 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

33. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP033094 (Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

34. spacer 1.1|27631|51|CP029931|PILER-CR matches to LT905061 (Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

35. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029926 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

36. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029947 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

37. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP044968 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

38. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP044958 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

39. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029943 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

40. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029953 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

41. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029955 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

42. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP022495 (Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

43. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP016184 (Escherichia coli strain EC2 plasmid pEC2-4, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

44. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP016183 (Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

45. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029924 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

46. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029934 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

47. spacer 1.1|27631|51|CP029931|PILER-CR matches to MN256757 (Escherichia coli strain 4M18F plasmid p4M18F, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

48. spacer 1.1|27631|51|CP029931|PILER-CR matches to NC_013365 (Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

49. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP041449 (Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

50. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029939 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

51. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029957 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

52. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029941 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

53. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029910 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

54. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029887 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

55. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029948 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

56. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029937 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

57. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029879 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

58. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP018656 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

59. spacer 1.1|27631|51|CP029931|PILER-CR matches to NC_016825 (Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

60. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029931 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

61. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_CP029935 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

62. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_LT985296 (Escherichia coli strain 1454 plasmid RCS78_p, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

63. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_MN101858 (Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

64. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_MN101856 (Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

65. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_MH733010 (Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

66. spacer 1.1|27631|51|CP029931|PILER-CR matches to MT219825 (Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

67. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_MG904992 (Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

68. spacer 1.1|27631|51|CP029931|PILER-CR matches to NZ_MG948335 (Escherichia coli strain 3498 plasmid p3498, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

69. spacer 1.1|27631|51|CP029931|PILER-CR matches to NC_023277 (Escherichia coli strain 63743 plasmid pEQ2, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

70. spacer 1.1|27631|51|CP029931|PILER-CR matches to NC_023289 (Escherichia coli strain T23 plasmid pEQ1, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

71. spacer 1.1|27631|51|CP029931|PILER-CR matches to MT219824 (Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

72. spacer 1.1|27631|51|CP029931|PILER-CR matches to MG874042 (Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence) position: , mismatch: 0, identity: 1.0

gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	CRISPR spacer
gagaactactgctaatcggttaccgggaatgtggtggtactgggtggaaag	Protospacer
***************************************************

73. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP026790 (Shigella flexneri 2a strain ATCC 29903 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

74. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP039717 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS000211 plasmid p10-3184.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

75. spacer 1.2|27702|47|CP029931|PILER-CR matches to KP899804 (Salmonella enterica strain F8475 plasmid pF8475, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

76. spacer 1.2|27702|47|CP029931|PILER-CR matches to KP899805 (Salmonella enterica strain 109/9 plasmid p109/9, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

77. spacer 1.2|27702|47|CP029931|PILER-CR matches to KP899806 (Salmonella enterica strain B71 plasmid pB71, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

78. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP037875 (Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain PNCS015054 plasmid pPNCS015054_S2, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

79. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP018652 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1705 plasmid pSE81-1705-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

80. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP039559 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014846 plasmid p08-4425.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

81. spacer 1.2|27702|47|CP029931|PILER-CR matches to MN256758 (Escherichia coli strain 4M8F plasmid p4M8F, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

82. spacer 1.2|27702|47|CP029931|PILER-CR matches to MN256759 (Escherichia coli strain 4M9F plasmid p4M9F, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

83. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP046007 (Escherichia coli strain 1919D62 plasmid p1919D62-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

84. spacer 1.2|27702|47|CP029931|PILER-CR matches to NC_002305 (Salmonella typhi plasmid R27, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

85. spacer 1.2|27702|47|CP029931|PILER-CR matches to LT905061 (Salmonella enterica subsp. enterica serovar Typhi isolate ISP_03_07467_SGB110-sc-1979083 genome assembly, plasmid: 2) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

86. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP022495 (Salmonella enterica subsp. enterica serovar Derby strain SA20035215 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

87. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP016184 (Escherichia coli strain EC2 plasmid pEC2-4, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

88. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP016183 (Escherichia coli strain EC2_1 plasmid pEC2_1-4, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

89. spacer 1.2|27702|47|CP029931|PILER-CR matches to MN256757 (Escherichia coli strain 4M18F plasmid p4M18F, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

90. spacer 1.2|27702|47|CP029931|PILER-CR matches to NC_016825 (Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

91. spacer 1.2|27702|47|CP029931|PILER-CR matches to MT219825 (Escherichia coli strain RW7-1 plasmid pRW7-1_235k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

92. spacer 1.2|27702|47|CP029931|PILER-CR matches to MT219824 (Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

93. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_LT904879 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 2) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

94. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_KX129784 (Escherichia coli strain H226B plasmid pH226B, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

95. spacer 1.2|27702|47|CP029931|PILER-CR matches to NC_009981 (Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

96. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029645 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

97. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029729 (Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

98. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP053721 (Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

99. spacer 1.2|27702|47|CP029931|PILER-CR matches to MN232190 (Escherichia coli plasmid pGD27-31, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

100. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP044299 (Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

101. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029690 (Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

102. spacer 1.2|27702|47|CP029931|PILER-CR matches to NC_003384 (Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

103. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP030182 (Salmonella enterica strain SA20030575 plasmid pSA20030575.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

104. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP049354 (Escherichia coli strain T28R plasmid pT28R-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

105. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP023167 (Salmonella enterica subsp. enterica serovar Saintpaul strain SGB23 plasmid pSGB23, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

106. spacer 1.2|27702|47|CP029931|PILER-CR matches to AP020333 (Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

107. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP037911 (Escherichia coli strain YSP8-1 plasmid pYSP8-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

108. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP046717 (Escherichia coli strain T16R plasmid pT16R-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

109. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP046004 (Escherichia coli strain 1919D3 plasmid p1919D3-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

110. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP024236 (Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

111. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029895 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_252186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

112. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029877 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_224186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

113. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP033094 (Escherichia coli strain CP53 plasmid pCP53-mcr, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

114. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029926 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_218186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

115. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029947 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_210186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

116. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP044968 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 plasmid pPNCS014881.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

117. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP044958 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007087 plasmid pPNCS007087.1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

118. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029943 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_212186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

119. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029953 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_204186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

120. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029955 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_202186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

121. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029924 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_221186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

122. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029934 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_214186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

123. spacer 1.2|27702|47|CP029931|PILER-CR matches to NC_013365 (Escherichia coli O111:H- str. 11128 plasmid pO111_1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

124. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP041449 (Escherichia coli strain YPE10 plasmid pYPE10-190k-tetX4, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

125. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029939 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_206186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

126. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029957 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_201186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

127. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029941 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_203186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

128. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029910 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_219186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

129. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029887 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_220186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

130. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029948 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_208186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

131. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029937 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_207186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

132. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029879 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_223186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

133. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP018656 (Salmonella enterica subsp. enterica serovar Enteritidis strain 81-1706 plasmid pSE81-1706, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

134. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029931 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_215186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

135. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_CP029935 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_213186 plasmid pHCM1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

136. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_LT985296 (Escherichia coli strain 1454 plasmid RCS78_p, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

137. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_MN101858 (Escherichia coli strain 2019XSD11-TC2 plasmid p2019XSD11-TC2-284, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

138. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_MN101856 (Escherichia coli strain 2019XSD11 plasmid p2019XSD11-190, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

139. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_MH733010 (Klebsiella pneumoniae strain KP14812 plasmid pKP14812-MCR-1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

140. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_MG904992 (Escherichia coli strain 14OD0056 plasmid p14ODMR, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

141. spacer 1.2|27702|47|CP029931|PILER-CR matches to NZ_MG948335 (Escherichia coli strain 3498 plasmid p3498, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

142. spacer 1.2|27702|47|CP029931|PILER-CR matches to NC_023277 (Escherichia coli strain 63743 plasmid pEQ2, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

143. spacer 1.2|27702|47|CP029931|PILER-CR matches to NC_023289 (Escherichia coli strain T23 plasmid pEQ1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

144. spacer 1.2|27702|47|CP029931|PILER-CR matches to MG874042 (Salmonella sp. strain Sa4 plasmid pSa4-CIP, complete sequence) position: , mismatch: 0, identity: 1.0

cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	CRISPR spacer
cgtggcagtgtcatctttccggatagcatgacgtcacggttaggaaa	Protospacer
***********************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3612 : 57130

Escherichia_phage(43.75%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS10564.1\|3612_3888_+\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	3.1e-47	100.0
AYS10565.1\|3806_4310_+\|transposase	IS1 transposase	Q71TF0	Escherichia_phage	6.3e-94	98.8
AYS10566.1\|4636_4861_-	hypothetical protein	NA	NA	NA	NA
AYS10567.1\|5516_5777_-	hypothetical protein	NA	NA	NA	NA
AYS10568.1\|5865_6357_-	hypothetical protein	NA	NA	NA	NA
AYS10569.1\|6361_6670_-	hypothetical protein	NA	NA	NA	NA
AYS10570.1\|6877_7258_-	hypothetical protein	NA	NA	NA	NA
AYS10571.1\|7343_7592_-	hypothetical protein	NA	NA	NA	NA
AYS10572.1\|7629_7851_-	hypothetical protein	S4TRP7	Salmonella_phage	8.2e-06	40.3
AYS10573.1\|8013_8397_-	hypothetical protein	NA	NA	NA	NA
AYS10574.1\|8711_8936_-	hypothetical protein	NA	NA	NA	NA
AYS10575.1\|9022_9487_-	hypothetical protein	NA	NA	NA	NA
AYS10576.1\|9669_12099_-	hypothetical protein	NA	NA	NA	NA
AYS10577.1\|12221_12668_-	hypothetical protein	NA	NA	NA	NA
AYS10578.1\|12715_13522_-	hypothetical protein	NA	NA	NA	NA
AYS10579.1\|13749_13992_-	hypothetical protein	NA	NA	NA	NA
AYS10580.1\|14069_14402_-	hypothetical protein	NA	NA	NA	NA
AYS10581.1\|14901_16083_-	hypothetical protein	NA	NA	NA	NA
AYS10582.1\|16091_16388_-	hypothetical protein	A0A222YWE2	Escherichia_phage	4.9e-06	35.1
AYS10583.1\|16451_16919_-	hypothetical protein	NA	NA	NA	NA
AYS10584.1\|17778_18555_+	hypothetical protein	NA	NA	NA	NA
AYS10585.1\|18704_19481_+	hypothetical protein	NA	NA	NA	NA
AYS10586.1\|19669_20011_+	hypothetical protein	NA	NA	NA	NA
AYS10587.1\|20111_20375_+	hypothetical protein	M9UXL5	Escherichia_phage	2.1e-08	45.1
AYS10588.1\|20608_21307_+	hypothetical protein	A0A1W6DXB8	Sphingobium_phage	4.2e-11	25.2
AYS10589.1\|21461_21758_-	hypothetical protein	NA	NA	NA	NA
AYS10590.1\|21845_24230_-	periplasmic protein	NA	NA	NA	NA
AYS10591.1\|24480_25089_+	hypothetical protein	NA	NA	NA	NA
AYS10592.1\|25201_25498_+	hypothetical protein	NA	NA	NA	NA
AYS10593.1\|25502_26099_+	hypothetical protein	NA	NA	NA	NA
AYS10594.1\|26490_27372_+	replication protein	J9Q7H0	Salmonella_phage	6.5e-54	41.3
AYS10595.1\|27957_28473_-	hypothetical protein	NA	NA	NA	NA
AYS10596.1\|29123_31580_-	periplasmic protein	NA	NA	NA	NA
AYS10597.1\|32216_33971_-	DNA restriction methylase	J9Q747	Salmonella_phage	1.1e-68	30.9
AYS10598.1\|34156_35314_-	hypothetical protein	A0A2P9HXK7	Yersinia_phage	1.1e-19	24.6
AYS10599.1\|35673_36498_+	DNA modification methylase	A0A2P9J4Y7	Pectobacterium_phage	2.8e-46	37.6
AYS10600.1\|36512_37334_-	hypothetical protein	NA	NA	NA	NA
AYS10601.1\|37616_38324_-	hypothetical protein	NA	NA	NA	NA
AYS10602.1\|38538_39615_-	hypothetical protein	A0A1P8DTT7	Salmonella_phage	7.8e-09	31.8
AYS10603.1\|40149_41025_+	replication initiation protein	J9Q7H0	Salmonella_phage	1.6e-60	43.5
AYS10604.1\|41278_41860_-	hypothetical protein	NA	NA	NA	NA
AYS10605.1\|42466_42820_+	hypothetical protein	NA	NA	NA	NA
AYS10606.1\|42871_43189_+	hypothetical protein	NA	NA	NA	NA
AYS10607.1\|43188_43986_+	pilus assembly protein	NA	NA	NA	NA
AYS10608.1\|43988_45221_+	hypothetical protein	NA	NA	NA	NA
AYS10609.1\|45222_45663_+	hypothetical protein	NA	NA	NA	NA
AYS10610.1\|45640_47011_+	TrhB	NA	NA	NA	NA
AYS10611.1\|47019_47532_+	hypothetical protein	NA	NA	NA	NA
AYS10612.1\|47532_48390_+	plasmid transfer protein	NA	NA	NA	NA
AYS10613.1\|48399_49350_+	hypothetical protein	NA	NA	NA	NA
AYS10614.1\|49358_52040_+	hypothetical protein	NA	NA	NA	NA
AYS10615.1\|52673_52949_-\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	1.9e-44	93.4
AYS10616.1\|53077_55081_+\|holin	transporter, betaine/carnitine/choline family	A0A2I7QNT1	Vibrio_phage	7.5e-21	25.9
AYS10617.1\|55143_56439_+	hypothetical protein	NA	NA	NA	NA
AYS10618.1\|56432_56936_-\|transposase	IS1 transposase	Q71TF0	Escherichia_phage	1.5e-95	100.0
AYS10619.1\|56854_57130_-\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	3.1e-47	100.0

DBSCAN-SWA_2

81854 : 134417

Escherichia_phage(50.0%)

integrase,transposase

attL 106758:106772|attR 131258:131272

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS10640.1\|81854_82358_-\|transposase	IS1 transposase	Q71TF0	Escherichia_phage	1.5e-95	100.0
AYS10641.1\|82276_82552_-\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	3.1e-47	100.0
AYS10642.1\|82593_84450_+	hypothetical protein	S5MMD7	Bacillus_phage	2.2e-19	26.4
AYS10643.1\|84847_85723_+	hypothetical protein	NA	NA	NA	NA
AYS10644.1\|85781_86159_+	hypothetical protein	NA	NA	NA	NA
AYS10645.1\|86219_87206_+	hypothetical protein	NA	NA	NA	NA
AYS10646.1\|87265_88318_+	hypothetical protein	NA	NA	NA	NA
AYS10647.1\|88356_88626_+	hypothetical protein	NA	NA	NA	NA
AYS10648.1\|88696_89824_+	hypothetical protein	NA	NA	NA	NA
AYS10649.1\|89901_91914_+	hypothetical protein	NA	NA	NA	NA
AYS10650.1\|91985_92207_+	hypothetical protein	NA	NA	NA	NA
AYS10651.1\|92321_93554_+	hypothetical protein	A0A0H5AWB1	Pseudomonas_phage	3.0e-12	29.7
AYS10652.1\|93828_94353_+	hypothetical protein	NA	NA	NA	NA
AYS10653.1\|94343_95309_+	hypothetical protein	NA	NA	NA	NA
AYS10654.1\|95379_96315_+	hypothetical protein	NA	NA	NA	NA
AYS10655.1\|96392_97313_+	hypothetical protein	NA	NA	NA	NA
AYS10656.1\|97385_98321_+	hypothetical protein	NA	NA	NA	NA
AYS10657.1\|98497_99454_+	hypothetical protein	NA	NA	NA	NA
AYS10658.1\|99866_100136_+	hypothetical protein	NA	NA	NA	NA
AYS10659.1\|100190_100781_+	hypothetical protein	NA	NA	NA	NA
AYS10660.1\|100788_101046_+	hypothetical protein	NA	NA	NA	NA
AYS10661.1\|101119_101656_+	hypothetical protein	NA	NA	NA	NA
AYS10662.1\|101672_102128_+	hypothetical protein	NA	NA	NA	NA
AYS10663.1\|102111_102339_+	hypothetical protein	NA	NA	NA	NA
AYS10664.1\|102387_102642_-	hypothetical protein	NA	NA	NA	NA
AYS10665.1\|102709_103669_+	hypothetical protein	NA	NA	NA	NA
AYS10666.1\|103679_104588_+	hypothetical protein	NA	NA	NA	NA
AYS10667.1\|104892_106074_-	recombinase	NA	NA	NA	NA
AYS10668.1\|106288_106501_+	regulatory protein	NA	NA	NA	NA
106758:106772	attL	NA	NA	NA	NA
AYS10669.1\|106807_107083_+\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	7.7e-46	98.9
106758:106772	attL	NA	NA	NA	NA
AYS10670.1\|107001_107505_+\|transposase	IS1 transposase	Q71TF0	Escherichia_phage	1.5e-95	100.0
AYS10671.1\|107611_108046_-	transcriptional regulator MerR	NA	NA	NA	NA
AYS10672.1\|108063_108468_+	MerT	NA	NA	NA	NA
AYS10673.1\|108481_108757_+	mercuric transport protein	NA	NA	NA	NA
AYS10674.1\|108792_109215_+	mercury transport protein MerC	NA	NA	NA	NA
AYS10675.1\|109266_110961_+	mercuric reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
AYS10676.1\|110978_111341_+	transcriptional regulator MerD	NA	NA	NA	NA
AYS10677.1\|111337_111574_+	mercury resistance protein	NA	NA	NA	NA
AYS10678.1\|111570_112278_+	hypothetical protein	NA	NA	NA	NA
AYS10679.1\|112316_113621_+\|integrase	integrase	NA	NA	NA	NA
AYS10680.1\|113649_114372_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	3.2e-139	100.0
AYS10681.1\|115127_115979_+	replication protein	NA	NA	NA	NA
AYS10682.1\|116286_117102_+	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	3.5e-09	27.6
AYS10683.1\|117162_117966_+	streptomycin phosphotransferase	NA	NA	NA	NA
AYS10684.1\|117965_118802_+	streptomycin phosphotransferase	NA	NA	NA	NA
AYS10685.1\|118862_119585_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	3.2e-139	100.0
AYS10686.1\|120164_121025_-	beta-lactamase	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
120619:120633	attR	NA	NA	NA	NA
AYS10687.1\|121207_121474_-	resolvase	Q1MVP4	Enterobacteria_phage	1.4e-36	100.0
120619:120633	attR	NA	NA	NA	NA
AYS10688.1\|121506_122229_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	3.2e-139	100.0
AYS10689.1\|122462_123389_-	sulfonamide-resistant dihydropteroate synthase sul1	A0A0B5J4J5	Pandoravirus	7.2e-11	27.2
AYS10690.1\|123295_123676_-	Ethidium bromide-methyl viologen resistance protein EmrE	NA	NA	NA	NA
AYS10691.1\|123872_124472_-	dihydrofolate reductase	A0A1B2IAU3	Erwinia_phage	5.3e-15	32.8
AYS10692.1\|124503_125517_+\|integrase	phage integrase	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AYS10693.1\|125506_126070_+	transposon tn21 modulator protein	NA	NA	NA	NA
AYS10694.1\|126195_126756_+	Tn21 resolvase	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
AYS10695.1\|126758_129725_+\|transposase	transposase tn21	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
AYS10696.1\|129791_130169_+	hypothetical protein	NA	NA	NA	NA
AYS10697.1\|130369_131029_-	chloramphenicol acetyltransferase	G3CFL0	Escherichia_phage	8.4e-131	100.0
AYS10698.1\|131307_131583_+\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	3.1e-47	100.0
AYS10699.1\|131501_132005_+\|transposase	IS1 transposase	Q71TF0	Escherichia_phage	1.3e-94	99.4
AYS10700.1\|132586_133342_+	replication protein	I3WF20	Macacine_betaherpesvirus	1.9e-134	94.8
AYS10701.1\|133719_133995_+\|transposase	IS1 transposase	Q71TE9	Escherichia_phage	3.1e-47	100.0
AYS10702.1\|133913_134417_+\|transposase	IS1 transposase	Q71TF0	Escherichia_phage	3.6e-89	94.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029930

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP029931

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection