CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029922	Salmonella enterica subsp. enterica serovar Typhi strain 311189_269186 chromosome, complete genome	1 crisprs	DEDDh,WYL,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	0	5	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029922_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029922_1

2901137-2901557

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
GGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

6 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of CP029922_1

>merge|CP029922|1|2901137-2901557|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGGCGCGGGGAACACGGACAGCAACCCGTGTCGGATATCAGACAGATCGGTTTATCCCCGCTGGCGCGGGGAACACACGCGAATCGCCAATCGCCGCCGCGTGAATTGCGGTTTATCCCCGCTGGCGCGGGGAACACCCACGATGTATGCCGACCGTGATTTTTACCGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGATACGCCTTTACGTCGCCCTCTTTGGCGCGCGGTTTATCCCCGCTGGCGCGGGGAACACATTAAAAAAGATTAATGTTGGTTATAGTTTTACGGTTTATCCCCGCTGGTGCGGGGAACACTAAAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP029922|1|1|2901137-2901531|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GGACAGCAACCCGTGTCGGATATCAGACAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAAAAAAGATTAATGTTGGTTATAGTTTTA
CGGTTTATCCCCGCTGGTGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGATCGG

>CP029922|1|1|2901137-2901531|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GGACAGCAACCCGTGTCGGATATCAGACAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAAAAAAGATTAATGTTGGTTATAGTTTTA
CGGTTTATCCCCGCTGGTGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGATCGG

>CP029922|1|1|2901139-2901557|PILER-CR
GTTTATCCCCGCTGGCGCGGGGAACACG	GACAGCAACCCGTGTCGGATATCAGACAGATCG
GTTTATCCCCGCTGGCGCGGGGAACACA	CGCGAATCGCCAATCGCCGCCGCGTGAATTGCG
GTTTATCCCCGCTGGCGCGGGGAACACC	CACGATGTATGCCGACCGTGATTTTTACCGCCG
GTTTATCCCCGCTGGCGCGGGGAACACA	GATACGCCTTTACGTCGCCCTCTTTGGCGCGCG
GTTTATCCCCGCTGGCGCGGGGAACACA	TTAAAAAAGATTAATGTTGGTTATAGTTTTACG
GTTTATCCCCGCTGGTGCGGGGAACACT	AAAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGATCG
GTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP029922.1\|AYS88037.1\|2893745_2894795_-\|tRNA-pseudouridine-synthase-D	unknown	unknown	gnl\|CDD\|234884
CP029922.1\|AYS88042.1\|2896875_2897481_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP029922.1\|AYS88045.1\|2900075_2901122_+\|alkaline-phosphatase-isozyme-conversion-protein	unknown	unknown	gnl\|CDD\|182299
CP029922.1\|AYS88040.1\|2895999_2896311_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP029922.1\|AYS88043.1\|2897467_2898907_-\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
CP029922.1\|AYS88054.1\|2910967_2911921_+\|pathogenicity-island-1-effector-protein-SopD	unknown	unknown	gnl\|CDD\|185277
CP029922.1\|AYS88038.1\|2894791_2895271_-\|2C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP029922.1\|AYS88044.1\|2898916_2899825_-\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235375
CP029922.1\|AYS88055.1\|2912008_2912743_-\|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase	unknown	unknown	gnl\|CDD\|234997
CP029922.1\|AYS88053.1\|2907686_2907860_-\|hypothetical-protein	unknown	unknown	unknown
CP029922.1\|AYS88050.1\|2904293_2905358_-\|Cse4-family-CRISPR-associated-protein	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP029922.1\|AYS88048.1\|2902854_2903559_-\|CRISPR/Cas-system-associated-RAMP-superfamily-protein	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
CP029922.1\|AYS88049.1\|2903558_2904284_-\|CRISPR-associated-protein-Cas5	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP029922.1\|AYS88036.1\|2893003_2893765_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP029922.1\|AYS88039.1\|2895270_2895981_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP029922.1\|AYS88047.1\|2901937_2902855_-\|CRISPR/Cas-system-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP029922.1\|AYS88052.1\|2905993_2907529_-\|Cse1-family-CRISPR-associated-protein	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP029922.1\|AYS88041.1\|2896501_2896858_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371891
CP029922.1\|AYS88051.1\|2905374_2905977_-\|CRISPR/Cas-system-associated-protein-Cse2	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
CP029922.1\|AYS88046.1\|2901641_2901935_-\|ssRNA-endonuclease	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930

Protein	Function_ID	Function_description	E-value
CP029922.1\|AYS88037.1\|2893745_2894795_-\|tRNA-pseudouridine-synthase-D	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP029922.1\|AYS88042.1\|2896875_2897481_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP029922.1\|AYS88045.1\|2900075_2901122_+\|alkaline-phosphatase-isozyme-conversion-protein	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP029922.1\|AYS88040.1\|2895999_2896311_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP029922.1\|AYS88043.1\|2897467_2898907_-\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP029922.1\|AYS88054.1\|2910967_2911921_+\|pathogenicity-island-1-effector-protein-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP029922.1\|AYS88038.1\|2894791_2895271_-\|2C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP029922.1\|AYS88044.1\|2898916_2899825_-\|ATP-sulfurylase	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP029922.1\|AYS88055.1\|2912008_2912743_-\|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.17372e-138
CP029922.1\|AYS88050.1\|2904293_2905358_-\|Cse4-family-CRISPR-associated-protein	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.07119e-119
CP029922.1\|AYS88048.1\|2902854_2903559_-\|CRISPR/Cas-system-associated-RAMP-superfamily-protein	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	2.23447e-89
CP029922.1\|AYS88049.1\|2903558_2904284_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.27863e-48
CP029922.1\|AYS88036.1\|2893003_2893765_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP029922.1\|AYS88039.1\|2895270_2895981_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
CP029922.1\|AYS88047.1\|2901937_2902855_-\|CRISPR/Cas-system-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.77553e-155
CP029922.1\|AYS88052.1\|2905993_2907529_-\|Cse1-family-CRISPR-associated-protein	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP029922.1\|AYS88041.1\|2896501_2896858_-\|hypothetical-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP029922.1\|AYS88051.1\|2905374_2905977_-\|CRISPR/Cas-system-associated-protein-Cse2	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.74874e-39
CP029922.1\|AYS88046.1\|2901641_2901935_-\|ssRNA-endonuclease	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.81067e-65

>CP029922.1|AYS88045.1|2900075_2901122_+|alkaline-phosphatase-isozyme-conversion-protein
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLNNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP029922.1|AYS88044.1|2898916_2899825_-|ATP-sulfurylase
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP029922.1|AYS88043.1|2897467_2898907_-|ATP-sulfurylase
MNTILAQQIASEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNPDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEVCAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP029922.1|AYS88042.1|2896875_2897481_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP029922.1|AYS88041.1|2896501_2896858_-|hypothetical-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP029922.1|AYS88040.1|2895999_2896311_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP029922.1|AYS88039.1|2895270_2895981_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP029922.1|AYS88038.1|2894791_2895271_-|2C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP029922.1|AYS88037.1|2893745_2894795_-|tRNA-pseudouridine-synthase-D
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADVLAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP029922.1|AYS88036.1|2893003_2893765_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>CP029922.1|AYS88046.1|2901641_2901935_-|ssRNA-endonuclease
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>CP029922.1|AYS88047.1|2901937_2902855_-|CRISPR/Cas-system-associated-protein-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWGGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFEIVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSHPIAIPLPVALGDSGHRST
>CP029922.1|AYS88048.1|2902854_2903559_-|CRISPR/Cas-system-associated-RAMP-superfamily-protein
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHSLFLIETKLFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>CP029922.1|AYS88049.1|2903558_2904284_-|CRISPR-associated-protein-Cas5
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>CP029922.1|AYS88050.1|2904293_2905358_-|Cse4-family-CRISPR-associated-protein
MIMTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFDRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>CP029922.1|AYS88051.1|2905374_2905977_-|CRISPR/Cas-system-associated-protein-Cse2
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERSRIRWANEYLSTSRGK
>CP029922.1|AYS88052.1|2905993_2907529_-|Cse1-family-CRISPR-associated-protein
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMNKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>CP029922.1|AYS88053.1|2907686_2907860_-|hypothetical-protein
MKSIINWDTGNWPVFLSGLGYPHWRGERCAIKTASTVYPIILGNVLKITDNYKKYIV
>CP029922.1|AYS88054.1|2910967_2911921_+|pathogenicity-island-1-effector-protein-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP029922.1|AYS88055.1|2912008_2912743_-|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWAQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029922_1	1.3\|2901288\|32\|CP029922\|CRISPRCasFinder,CRT	2901288-2901319	32	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	453979-454010	5	0.844
CP029922_1	1.3\|2901288\|32\|CP029922\|CRISPRCasFinder,CRT	2901288-2901319	32	NZ_KU130294	Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence	251896-251927	5	0.844
CP029922_1	1.3\|2901288\|32\|CP029922\|CRISPRCasFinder,CRT	2901288-2901319	32	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	6517-6548	5	0.844
CP029922_1	1.3\|2901288\|32\|CP029922\|CRISPRCasFinder,CRT	2901288-2901319	32	NZ_CP039989	Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence	238872-238903	5	0.844
CP029922_1	1.3\|2901288\|32\|CP029922\|CRISPRCasFinder,CRT	2901288-2901319	32	NZ_MN433457	Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence	235351-235382	5	0.844
CP029922_1	1.3\|2901288\|32\|CP029922\|CRISPRCasFinder,CRT	2901288-2901319	32	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	378779-378810	5	0.844
CP029922_1	1.3\|2901288\|32\|CP029922\|CRISPRCasFinder,CRT	2901288-2901319	32	NZ_CP045003	Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence	82539-82570	5	0.844
CP029922_1	1.3\|2901288\|32\|CP029922\|CRISPRCasFinder,CRT	2901288-2901319	32	NZ_CP045917	Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence	224279-224310	5	0.844
CP029922_1	1.3\|2901288\|32\|CP029922\|CRISPRCasFinder,CRT	2901288-2901319	32	MF344571	Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence	221127-221158	5	0.844
CP029922_1	1.3\|2901288\|32\|CP029922\|CRISPRCasFinder,CRT	2901288-2901319	32	MF344569	Pseudomonas aeruginosa plasmid p12939-PER, complete sequence	284046-284077	5	0.844
CP029922_1	1.3\|2901288\|32\|CP029922\|CRISPRCasFinder,CRT	2901288-2901319	32	MF344570	Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence	219145-219176	5	0.844
CP029922_1	1.3\|2901288\|32\|CP029922\|CRISPRCasFinder,CRT	2901288-2901319	32	NZ_CP039294	Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence	55495-55526	5	0.844
CP029922_1	1.3\|2901288\|32\|CP029922\|CRISPRCasFinder,CRT	2901288-2901319	32	CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	376216-376247	5	0.844
CP029922_1	1.3\|2901288\|32\|CP029922\|CRISPRCasFinder,CRT	2901288-2901319	32	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	134871-134902	5	0.844
CP029922_1	1.3\|2901288\|32\|CP029922\|CRISPRCasFinder,CRT	2901288-2901319	32	NZ_CP016215	Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence	88841-88872	5	0.844
CP029922_1	1.9\|2901289\|33\|CP029922\|PILER-CR	2901289-2901321	33	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	453978-454010	6	0.818
CP029922_1	1.9\|2901289\|33\|CP029922\|PILER-CR	2901289-2901321	33	NZ_KU130294	Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence	251896-251928	6	0.818
CP029922_1	1.9\|2901289\|33\|CP029922\|PILER-CR	2901289-2901321	33	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	6516-6548	6	0.818
CP029922_1	1.9\|2901289\|33\|CP029922\|PILER-CR	2901289-2901321	33	NZ_CP039989	Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence	238872-238904	6	0.818
CP029922_1	1.9\|2901289\|33\|CP029922\|PILER-CR	2901289-2901321	33	NZ_MN433457	Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence	235350-235382	6	0.818
CP029922_1	1.9\|2901289\|33\|CP029922\|PILER-CR	2901289-2901321	33	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	378778-378810	6	0.818
CP029922_1	1.9\|2901289\|33\|CP029922\|PILER-CR	2901289-2901321	33	NZ_CP045003	Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence	82539-82571	6	0.818
CP029922_1	1.9\|2901289\|33\|CP029922\|PILER-CR	2901289-2901321	33	NZ_CP045917	Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence	224279-224311	6	0.818
CP029922_1	1.9\|2901289\|33\|CP029922\|PILER-CR	2901289-2901321	33	MF344571	Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence	221127-221159	6	0.818
CP029922_1	1.9\|2901289\|33\|CP029922\|PILER-CR	2901289-2901321	33	MF344569	Pseudomonas aeruginosa plasmid p12939-PER, complete sequence	284046-284078	6	0.818
CP029922_1	1.9\|2901289\|33\|CP029922\|PILER-CR	2901289-2901321	33	MF344570	Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence	219145-219177	6	0.818
CP029922_1	1.9\|2901289\|33\|CP029922\|PILER-CR	2901289-2901321	33	NZ_CP039294	Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence	55495-55527	6	0.818
CP029922_1	1.9\|2901289\|33\|CP029922\|PILER-CR	2901289-2901321	33	CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	376216-376248	6	0.818
CP029922_1	1.9\|2901289\|33\|CP029922\|PILER-CR	2901289-2901321	33	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	134871-134903	6	0.818
CP029922_1	1.9\|2901289\|33\|CP029922\|PILER-CR	2901289-2901321	33	NZ_CP016215	Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence	88840-88872	6	0.818
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	KJ019071	Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome	59609-59640	7	0.781
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	MN694480	Marine virus AFVG_250M133, complete genome	20886-20917	7	0.781
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	MN694671	Marine virus AFVG_250M145, complete genome	23163-23194	7	0.781
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	MN694753	Marine virus AFVG_250M144, complete genome	25459-25490	7	0.781
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	MN694231	Marine virus AFVG_250M143, complete genome	21163-21194	7	0.781
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	MN693981	Marine virus AFVG_250M146, complete genome	18773-18804	7	0.781
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	NZ_CP046723	Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence	559039-559070	8	0.75
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	214654-214685	8	0.75
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	NZ_CP034149	Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence	578776-578807	8	0.75
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	592092-592123	8	0.75
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	MN694115	Marine virus AFVG_250M901, complete genome	49467-49498	8	0.75
CP029922_1	1.11\|2901411\|33\|CP029922\|PILER-CR	2901411-2901443	33	NZ_CP046723	Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence	559038-559070	8	0.758
CP029922_1	1.11\|2901411\|33\|CP029922\|PILER-CR	2901411-2901443	33	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	214653-214685	8	0.758
CP029922_1	1.11\|2901411\|33\|CP029922\|PILER-CR	2901411-2901443	33	NZ_CP034149	Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence	578775-578807	8	0.758
CP029922_1	1.11\|2901411\|33\|CP029922\|PILER-CR	2901411-2901443	33	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	592092-592124	8	0.758
CP029922_1	1.11\|2901411\|33\|CP029922\|PILER-CR	2901411-2901443	33	KJ019071	Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome	59609-59641	8	0.758
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	NZ_CP046630	Streptococcus equinus strain CNU G6 plasmid p1_CNU_G6, complete sequence	66427-66458	9	0.719
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	NZ_CP046920	Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence	70206-70237	9	0.719
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	MN694046	Marine virus AFVG_250M906, complete genome	22321-22352	9	0.719
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	MN693836	Marine virus AFVG_250M487, complete genome	10882-10913	9	0.719
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	MN693891	Marine virus AFVG_250M480, complete genome	21841-21872	9	0.719
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	MK268344	Salmonella phage Munch, complete genome	122526-122557	9	0.719
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	MN694071	Marine virus AFVG_250M483, complete genome	16976-17007	9	0.719
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	MN694294	Marine virus AFVG_250M486, complete genome	8469-8500	9	0.719
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	MN693751	Marine virus AFVG_250M485, complete genome	13096-13127	9	0.719
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	MN694002	Marine virus AFVG_250M481, complete genome	18787-18818	9	0.719
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	MN694650	Marine virus AFVG_250M482, complete genome	20198-20229	9	0.719
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	MN693906	Marine virus AFVG_250M905, complete genome	17506-17537	9	0.719
CP029922_1	1.5\|2901410\|32\|CP029922\|CRISPRCasFinder,CRT	2901410-2901441	32	MN694711	Marine virus AFVG_250M484, complete genome	24974-25005	9	0.719
CP029922_1	1.6\|2901471\|32\|CP029922\|CRISPRCasFinder,CRT	2901471-2901502	32	KR052482	Sinorhizobium phage phiN3, complete genome	197290-197321	9	0.719

1. spacer 1.3|2901288|32|CP029922|CRISPRCasFinder,CRT matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

2. spacer 1.3|2901288|32|CP029922|CRISPRCasFinder,CRT matches to NZ_KU130294 (Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

3. spacer 1.3|2901288|32|CP029922|CRISPRCasFinder,CRT matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

4. spacer 1.3|2901288|32|CP029922|CRISPRCasFinder,CRT matches to NZ_CP039989 (Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

5. spacer 1.3|2901288|32|CP029922|CRISPRCasFinder,CRT matches to NZ_MN433457 (Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

6. spacer 1.3|2901288|32|CP029922|CRISPRCasFinder,CRT matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

7. spacer 1.3|2901288|32|CP029922|CRISPRCasFinder,CRT matches to NZ_CP045003 (Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

8. spacer 1.3|2901288|32|CP029922|CRISPRCasFinder,CRT matches to NZ_CP045917 (Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

9. spacer 1.3|2901288|32|CP029922|CRISPRCasFinder,CRT matches to MF344571 (Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

10. spacer 1.3|2901288|32|CP029922|CRISPRCasFinder,CRT matches to MF344569 (Pseudomonas aeruginosa plasmid p12939-PER, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

11. spacer 1.3|2901288|32|CP029922|CRISPRCasFinder,CRT matches to MF344570 (Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

12. spacer 1.3|2901288|32|CP029922|CRISPRCasFinder,CRT matches to NZ_CP039294 (Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

13. spacer 1.3|2901288|32|CP029922|CRISPRCasFinder,CRT matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

14. spacer 1.3|2901288|32|CP029922|CRISPRCasFinder,CRT matches to NZ_CP015879 (Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

15. spacer 1.3|2901288|32|CP029922|CRISPRCasFinder,CRT matches to NZ_CP016215 (Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

16. spacer 1.9|2901289|33|CP029922|PILER-CR matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

17. spacer 1.9|2901289|33|CP029922|PILER-CR matches to NZ_KU130294 (Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

18. spacer 1.9|2901289|33|CP029922|PILER-CR matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

19. spacer 1.9|2901289|33|CP029922|PILER-CR matches to NZ_CP039989 (Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

20. spacer 1.9|2901289|33|CP029922|PILER-CR matches to NZ_MN433457 (Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

21. spacer 1.9|2901289|33|CP029922|PILER-CR matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

22. spacer 1.9|2901289|33|CP029922|PILER-CR matches to NZ_CP045003 (Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

23. spacer 1.9|2901289|33|CP029922|PILER-CR matches to NZ_CP045917 (Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

24. spacer 1.9|2901289|33|CP029922|PILER-CR matches to MF344571 (Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

25. spacer 1.9|2901289|33|CP029922|PILER-CR matches to MF344569 (Pseudomonas aeruginosa plasmid p12939-PER, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

26. spacer 1.9|2901289|33|CP029922|PILER-CR matches to MF344570 (Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

27. spacer 1.9|2901289|33|CP029922|PILER-CR matches to NZ_CP039294 (Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

28. spacer 1.9|2901289|33|CP029922|PILER-CR matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

29. spacer 1.9|2901289|33|CP029922|PILER-CR matches to NZ_CP015879 (Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

30. spacer 1.9|2901289|33|CP029922|PILER-CR matches to NZ_CP016215 (Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

31. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to KJ019071 (Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aattacaatggttaatgttggttatagtttag	Protospacer
* * * ** *.******************* .

32. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to MN694480 (Marine virus AFVG_250M133, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

33. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to MN694671 (Marine virus AFVG_250M145, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

34. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to MN694753 (Marine virus AFVG_250M144, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

35. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to MN694231 (Marine virus AFVG_250M143, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

36. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to MN693981 (Marine virus AFVG_250M146, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

37. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

38. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

39. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

40. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

41. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to MN694115 (Marine virus AFVG_250M901, complete genome) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
attaaaaaatattaatcttggttcttccgtaa	Protospacer
********* ****** ****** *  . * *

42. spacer 1.11|2901411|33|CP029922|PILER-CR matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 8, identity: 0.758

attaaaaaagattaatgttggttatagttttac---	CRISPR spacer
attaagaaagattaatgttgttta---atcaacgta	Protospacer
*****.************** ***    *. **

43. spacer 1.11|2901411|33|CP029922|PILER-CR matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 8, identity: 0.758

attaaaaaagattaatgttggttatagttttac---	CRISPR spacer
attaagaaagattaatgttgttta---atcaacgta	Protospacer
*****.************** ***    *. **

44. spacer 1.11|2901411|33|CP029922|PILER-CR matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 8, identity: 0.758

attaaaaaagattaatgttggttatagttttac---	CRISPR spacer
attaagaaagattaatgttgttta---atcaacgta	Protospacer
*****.************** ***    *. **

45. spacer 1.11|2901411|33|CP029922|PILER-CR matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 8, identity: 0.758

attaaaaaagattaatgttggttatagttttac---	CRISPR spacer
attaagaaagattaatgttgttta---atcaacgta	Protospacer
*****.************** ***    *. **

46. spacer 1.11|2901411|33|CP029922|PILER-CR matches to KJ019071 (Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome) position: , mismatch: 8, identity: 0.758

attaaaaaagattaatgttggttatagttttac	CRISPR spacer
aattacaatggttaatgttggttatagtttagg	Protospacer
* * * ** *.******************* .

47. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to NZ_CP046630 (Streptococcus equinus strain CNU G6 plasmid p1_CNU_G6, complete sequence) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aagaaaaatgattaatgttgtttataataact	Protospacer
*  ***** *********** *****.*  .

48. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to NZ_CP046920 (Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aagaaaaatgattaatgttgtttataataact	Protospacer
*  ***** *********** *****.*  .

49. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to MN694046 (Marine virus AFVG_250M906, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

50. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to MN693836 (Marine virus AFVG_250M487, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

51. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to MN693891 (Marine virus AFVG_250M480, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

52. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to MK268344 (Salmonella phage Munch, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
ggcagcattgattaatgatggttttagtttta	Protospacer
. .*. *  ******** ***** ********

53. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to MN694071 (Marine virus AFVG_250M483, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

54. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to MN694294 (Marine virus AFVG_250M486, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

55. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to MN693751 (Marine virus AFVG_250M485, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

56. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to MN694002 (Marine virus AFVG_250M481, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

57. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to MN694650 (Marine virus AFVG_250M482, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

58. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to MN693906 (Marine virus AFVG_250M905, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

59. spacer 1.5|2901410|32|CP029922|CRISPRCasFinder,CRT matches to MN694711 (Marine virus AFVG_250M484, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

60. spacer 1.6|2901471|32|CP029922|CRISPRCasFinder,CRT matches to KR052482 (Sinorhizobium phage phiN3, complete genome) position: , mismatch: 9, identity: 0.719

taaaacaccggttgcgcaacctccgcggggat	CRISPR spacer
aacaacaccggttgcgaaacctacgcaaaaaa	Protospacer
 * ************* ***** ***....*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1008493 : 1085805

Salmonella_phage(73.33%)

integrase,protease,transposase,tail,terminase

attL 990559:990578|attR 1061166:1061185

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
990559:990578	attL	NA	NA	NA	NA
AYS86341.1\|1008493_1009834_-\|integrase	integrase	S4TSP2	Salmonella_phage	7.9e-261	99.8
AYS86342.1\|1009830_1010079_-	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
AYS86343.1\|1010119_1010365_-	bacteriophage protein	S4TR31	Salmonella_phage	1.3e-36	96.2
AYS86344.1\|1010364_1011246_-	DNA methylase	A0A0M4R347	Salmonella_phage	1.2e-153	93.0
AYS86345.1\|1011242_1012307_-	bacteriophage protein	T1SBJ4	Salmonella_phage	6.3e-152	74.6
AYS86346.1\|1012384_1013065_-	exonuclease	A0A0M3ULE0	Salmonella_phage	1.9e-130	98.7
AYS86347.1\|1013061_1013847_-	bacteriophage recombination protein	A0A0M4RD39	Salmonella_phage	9.7e-150	99.6
AYS86348.1\|1013852_1014149_-	host-nuclease inhibitor protein	A0A0M5M5Z9	Salmonella_phage	4.4e-47	96.9
AYS86349.1\|1014239_1014440_-	prophage Kil protein	G8C7T2	Escherichia_phage	2.4e-12	48.4
AYS86350.1\|1014728_1015133_-	DNA-binding protein	H6WRX4	Salmonella_phage	7.1e-72	99.3
AYS86351.1\|1015464_1015839_+	DNA-binding protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
AYS86352.1\|1015923_1016907_+	bacteriophage protein	H6WRX7	Salmonella_phage	2.1e-162	99.7
AYS86353.1\|1016909_1017659_+	DNA replication protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
AYS86354.1\|1017669_1018017_+	DNA-binding protein	H6WRX9	Salmonella_phage	4.8e-53	90.4
AYS86355.1\|1018013_1018538_+	bacteriophage protein	A0A220NQV2	Salmonella_phage	1.8e-91	99.4
AYS86356.1\|1018537_1019011_+	methyltransferase	H9C170	Pectobacterium_phage	1.6e-67	80.1
AYS86357.1\|1019014_1019587_+	bacteriophage protein	S4TSR6	Salmonella_phage	1.3e-66	68.0
AYS86358.1\|1019680_1019947_+	bacteriophage protein	S4TNF2	Salmonella_phage	1.5e-46	100.0
AYS86359.1\|1020028_1020190_+	bacteriophage protein	NA	NA	NA	NA
AYS86360.1\|1020622_1021120_+	bacteriophage protein	NA	NA	NA	NA
AYS86361.1\|1021304_1021544_+	damage-inducible protein	H6WRY5	Salmonella_phage	3.9e-38	100.0
AYS86362.1\|1021533_1021839_+	bacteriophage protein	H6WRY6	Salmonella_phage	9.8e-42	100.0
AYS86363.1\|1021878_1022481_+	bacteriophage protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
AYS86364.1\|1022689_1023301_+	bacteriophage lambda protein NinG	A0A0M4RU10	Salmonella_phage	2.5e-92	99.5
AYS86365.1\|1023433_1024231_+	prophage antitermination protein	A0A0M4S661	Salmonella_phage	3.4e-150	99.2
AYS86366.1\|1024629_1024755_+	bacteriophage protein	NA	NA	NA	NA
AYS86367.1\|1024890_1025340_-	lipoprotein	NA	NA	NA	NA
AYS86368.1\|1025556_1025946_+	prophage membrane protein	K7PHB9	Enterobacterial_phage	3.1e-40	70.2
AYS86369.1\|1025932_1026214_+	prophage membrane protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
AYS86370.1\|1026213_1026828_+	bacteriophage protein	Q8HA86	Salmonella_phage	3.2e-108	93.1
AYS86371.1\|1027046_1027301_+	hypothetical protein	NA	NA	NA	NA
AYS86372.1\|1027405_1027783_+	hypothetical protein	Q6UAR9	Klebsiella_phage	4.9e-43	68.5
AYS86373.1\|1027846_1028107_+	hypothetical protein	NA	NA	NA	NA
AYS86374.1\|1028196_1028949_+\|terminase	prophage terminase small subunit	A0A0M3ULJ9	Salmonella_phage	3.4e-11	56.5
AYS86375.1\|1028914_1030318_+	bacteriophage protein	A0A077KAW0	Edwardsiella_phage	6.5e-189	70.1
AYS86376.1\|1030317_1031787_+	hypothetical protein	A0A0M4S6U1	Salmonella_phage	1.7e-280	99.2
AYS86377.1\|1031878_1032409_+	hypothetical protein	A0A0M4REK0	Salmonella_phage	8.7e-86	87.4
AYS86378.1\|1032423_1033656_+	hypothetical protein	A0A0M4R5A6	Salmonella_phage	1.4e-227	99.0
AYS86379.1\|1033660_1034158_+	bacteriophage protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
AYS86380.1\|1034169_1035111_+	bacteriophage protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	100.0
AYS86381.1\|1035152_1035521_+	bacteriophage protein	A0A0M4RTX5	Salmonella_phage	8.7e-61	100.0
AYS86382.1\|1035486_1035894_+	bacteriophage protein	A0A0M5M3S2	Salmonella_phage	7.1e-72	97.8
AYS86383.1\|1035890_1036445_+	bacteriophage protein	A0A0M4S631	Salmonella_phage	4.8e-95	100.0
AYS86384.1\|1036431_1036821_+	bacteriophage protein	A0A0M3ULK0	Salmonella_phage	6.0e-68	98.4
AYS86385.1\|1036795_1037359_+	bacteriophage protein	A0A0M4R331	Salmonella_phage	8.9e-81	75.3
AYS86386.1\|1037362_1038508_+	bacteriophage protein	A0A2H4J8G4	uncultured_Caudovirales_phage	2.2e-163	74.5
AYS86387.1\|1038519_1038960_+	bacteriophage protein	A0A2H4J619	uncultured_Caudovirales_phage	3.5e-56	74.7
AYS86388.1\|1038963_1039416_+	bacteriophage protein	A0A0M4S6U8	Salmonella_phage	1.9e-57	76.6
AYS86389.1\|1039593_1041546_+	bacteriophage protein	A0A0M4REK7	Salmonella_phage	1.8e-181	56.0
AYS86390.1\|1041545_1042196_+	bacteriophage protein	A0A0M3ULD5	Salmonella_phage	3.0e-56	60.6
AYS86391.1\|1042199_1042502_+	bacteriophage protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	57.0
AYS86392.1\|1042504_1043536_+	bacteriophage protein	A0A2H4J1B2	uncultured_Caudovirales_phage	1.2e-96	51.4
AYS86393.1\|1043532_1043868_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.1e-20	52.2
AYS86394.1\|1044062_1044794_+	bacteriophage protein	NA	NA	NA	NA
AYS86395.1\|1044793_1045222_+	bacteriophage protein	NA	NA	NA	NA
AYS86396.1\|1045280_1046036_+	bacteriophage protein	A0A0M5M1K7	Salmonella_phage	4.1e-105	85.3
AYS86397.1\|1046123_1046261_+	bacteriophage protein	A0A0M4S639	Salmonella_phage	2.0e-18	100.0
AYS86398.1\|1046276_1046630_+	bacteriophage protein	A0A0M4R339	Salmonella_phage	3.2e-60	98.3
AYS86399.1\|1046630_1047830_+	bacteriophage protein	A0A0M4RD32	Salmonella_phage	8.5e-214	97.5
AYS86400.1\|1047826_1048507_+	bacteriophage protein	A0A0M5M1K4	Salmonella_phage	6.9e-128	98.7
AYS86401.1\|1048506_1050018_+\|tail	bacteriophage tail protein	S4TP62	Salmonella_phage	1.5e-111	59.4
AYS86402.1\|1050032_1050551_+\|tail	tail fiber protein	A0A1B0VCD0	Salmonella_phage	1.7e-46	62.8
AYS86403.1\|1051472_1052174_-	hypothetical protein	NA	NA	NA	NA
AYS86404.1\|1052486_1052765_-	hypothetical protein	S4TNM0	Salmonella_phage	2.4e-26	92.3
AYS86405.1\|1053190_1055803_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.1e-19	22.6
AYS86406.1\|1056010_1057021_+	dihydroorotate dehydrogenase	NA	NA	NA	NA
AYS86407.1\|1057183_1057729_+	hypothetical protein	NA	NA	NA	NA
AYS86408.1\|1057725_1058835_-	MOSC domain-containing protein	NA	NA	NA	NA
AYS86409.1\|1058933_1061042_+	23S rRNA m(2)G2445 methyltransferase	W6LLI2	Streptococcus_phage	5.1e-20	29.6
AYS86410.1\|1061054_1062962_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
1061166:1061185	attR	NA	NA	NA	NA
AYS86411.1\|1062976_1064230_+	inner membrane protein	NA	NA	NA	NA
AYS86412.1\|1064234_1065875_+	paraquat-inducible protein B	NA	NA	NA	NA
AYS86413.1\|1065871_1066435_+	lipoprotein	NA	NA	NA	NA
AYS86414.1\|1066688_1066856_+	ribosome modulation factor	NA	NA	NA	NA
AYS86415.1\|1066955_1067474_-	D-3-hydroxydecanoyl-(acyl carrier-protein) dehydratase	NA	NA	NA	NA
AYS86416.1\|1067542_1069303_-\|protease	ATP-dependent protease	NA	NA	NA	NA
AYS86417.1\|1069488_1069941_+	Ter macrodomain organizer matS-binding protein	NA	NA	NA	NA
AYS86418.1\|1070012_1071065_-	outer membrane protein A	NA	NA	NA	NA
AYS86419.1\|1071419_1071929_-	cell division inhibitor	NA	NA	NA	NA
AYS86420.1\|1072145_1072751_+	competence-specific transcriptional regulator TfoX	NA	NA	NA	NA
AYS86421.1\|1072737_1074891_-	inner membrane protein	NA	NA	NA	NA
AYS86422.1\|1074909_1075356_-	hypothetical protein	NA	NA	NA	NA
AYS86423.1\|1075479_1077534_+	helicase IV	A7KV33	Bacillus_phage	6.5e-20	27.6
AYS86424.1\|1077569_1078028_-	methylglyoxal synthase	NA	NA	NA	NA
AYS86425.1\|1078122_1078785_-	hypothetical protein	NA	NA	NA	NA
AYS86426.1\|1078955_1079372_+	hypothetical protein	NA	NA	NA	NA
AYS86427.1\|1079416_1079734_-	heat shock protein HspQ	NA	NA	NA	NA
AYS86428.1\|1079791_1081003_-	23S rRNA m(5)C1962 methyltransferase	NA	NA	NA	NA
AYS86429.1\|1082134_1082593_+\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYS86430.1\|1083329_1083611_+	acylphosphatase	NA	NA	NA	NA
AYS86431.1\|1083607_1083937_-	sulfite reductase	NA	NA	NA	NA
AYS86432.1\|1084023_1084683_-	hypothetical protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
AYS86433.1\|1085346_1085805_+\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1528623 : 1602221

Burkholderia_virus(44.12%)

head,tRNA,plate,protease,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS86832.1\|1528623_1529082_-\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYS86833.1\|1529584_1529866_+	stress response protein	NA	NA	NA	NA
AYS86834.1\|1530134_1530956_+\|protease	serine protease	NA	NA	NA	NA
AYS86835.1\|1530990_1531320_-	multidrug efflux system protein MdtI	NA	NA	NA	NA
AYS86836.1\|1531306_1531669_-	multidrug efflux system protein MdtJ	NA	NA	NA	NA
AYS86837.1\|1531780_1531951_-	hypothetical protein	NA	NA	NA	NA
AYS86838.1\|1532085_1533120_+	hypothetical protein	NA	NA	NA	NA
AYS86839.1\|1533294_1534683_-	pyridine nucleotide transhydrogenase subunit beta	NA	NA	NA	NA
AYS86840.1\|1534693_1536223_-	pyridine nucleotide transhydrogenase subunit alpha	NA	NA	NA	NA
AYS86841.1\|1536749_1537694_+	hypothetical protein	NA	NA	NA	NA
AYS86842.1\|1537875_1538265_-	bacteriophage transcriptional regulator	Q6QIE8	Burkholderia_phage	4.5e-31	54.2
AYS86843.1\|1538236_1538689_-	hypothetical protein	A4JWM5	Burkholderia_virus	1.2e-24	46.6
AYS86844.1\|1538883_1539114_-	hypothetical protein	NA	NA	NA	NA
AYS86845.1\|1539110_1539794_-	hypothetical protein	A0A2P9JZH4	Alteromonadaceae_phage	2.6e-34	37.3
AYS86846.1\|1540378_1540681_-	hypothetical protein	NA	NA	NA	NA
AYS86847.1\|1541251_1541782_-	bacteriophage host-nuclease inhibitor protein	L7P7T1	Pseudomonas_phage	3.4e-58	66.1
AYS86848.1\|1542081_1543248_-	ExeA protein	A4JWN1	Burkholderia_virus	3.3e-122	59.7
AYS86849.1\|1543258_1545028_-	hypothetical protein	Q6QIE0	Burkholderia_phage	2.8e-229	68.5
AYS86850.1\|1546472_1546823_+	hypothetical protein	A4JWP3	Burkholderia_virus	4.5e-22	53.0
AYS86851.1\|1547537_1548188_+	lipoprotein	Q5ZQY9	Pseudomonas_phage	8.1e-09	32.9
AYS86852.1\|1548510_1548822_+	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
AYS86853.1\|1548821_1549367_+	hypothetical protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
AYS86854.1\|1549363_1550959_+	hypothetical protein	A4JWJ4	Burkholderia_virus	9.3e-184	62.6
AYS86855.1\|1550958_1552455_+	hypothetical protein	A4JWJ5	Burkholderia_virus	8.0e-169	59.6
AYS86856.1\|1552435_1553257_+\|head	phage head morphogenesis protein	A4JWJ6	Burkholderia_virus	5.3e-98	61.2
AYS86857.1\|1553259_1553718_+	bacteriophage protein	Q6QIB8	Burkholderia_phage	1.5e-30	44.8
AYS86858.1\|1553932_1555048_+	hypothetical protein	A4JWJ9	Burkholderia_virus	7.9e-97	51.1
AYS86859.1\|1555062_1556016_+	hypothetical protein	A4JWK0	Burkholderia_virus	5.2e-65	44.5
AYS86860.1\|1556025_1556364_+	hypothetical protein	NA	NA	NA	NA
AYS86861.1\|1556365_1556812_+	hypothetical protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
AYS86862.1\|1556811_1557276_+	hypothetical protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
AYS86863.1\|1557516_1558944_+\|tail	bacteriophage tail sheath protein	A4JWK5	Burkholderia_virus	3.7e-216	77.4
AYS86864.1\|1558943_1559465_+\|tail	tail core protein	A4JWK6	Burkholderia_virus	8.0e-68	68.2
AYS86865.1\|1559467_1559749_+	hypothetical protein	NA	NA	NA	NA
AYS86866.1\|1559846_1560182_+	hypothetical protein	NA	NA	NA	NA
AYS86867.1\|1560357_1562823_+	bacteriophage protein	A4JWL0	Burkholderia_virus	2.2e-168	42.6
AYS86868.1\|1562822_1563707_+	hypothetical protein	A4JWL1	Burkholderia_virus	7.5e-50	47.0
AYS86869.1\|1563703_1563919_+\|tail	bacteriophage tail fiber protein	Q6QIA3	Burkholderia_phage	2.4e-18	60.0
AYS86870.1\|1563906_1565061_+	bacteriophage regulatory protein	Q6QIA2	Burkholderia_phage	4.7e-84	47.1
AYS86871.1\|1565057_1565585_+\|plate	bacteriophage baseplate protein	Q6QIA1	Burkholderia_phage	1.5e-21	46.5
AYS86872.1\|1565641_1565989_+\|plate	bacteriophage baseplate protein	Q6QIA0	Burkholderia_phage	8.6e-34	60.6
AYS86873.1\|1565979_1567083_+\|plate	bacteriophage baseplate assembly protein	Q6QI99	Burkholderia_phage	5.4e-106	54.3
AYS86874.1\|1567075_1567654_+\|tail	bacteriophage tail fiber protein	A4JWL7	Burkholderia_virus	6.4e-66	65.8
AYS86875.1\|1567656_1568682_+\|tail	bacteriophage tail fiber protein	M1TAS6	Escherichia_phage	1.6e-64	53.3
AYS86876.1\|1569195_1569813_+\|tail	bacteriophage tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	5.8e-65	59.9
AYS86877.1\|1571323_1571896_+	DNA-invertase	A0A0A7NPV4	Enterobacteria_phage	8.8e-84	84.7
AYS86878.1\|1572176_1573559_+	amino acid permease	NA	NA	NA	NA
AYS86879.1\|1573620_1573956_-	hypothetical protein	NA	NA	NA	NA
AYS86880.1\|1574082_1574814_+	two-component response regulator	NA	NA	NA	NA
AYS86881.1\|1575294_1576446_+	outer membrane protein	Q1MVN1	Enterobacteria_phage	3.2e-117	59.1
AYS86882.1\|1576598_1578305_+	metal-dependent hydrolase	NA	NA	NA	NA
AYS86883.1\|1578412_1579717_+	two component sensor kinase	W8CYF6	Bacillus_phage	5.7e-14	22.7
AYS86884.1\|1579792_1580722_+	DNA sequence-specific contrahelicase	NA	NA	NA	NA
AYS86885.1\|1580718_1582122_-	fumarate hydratase class II	NA	NA	NA	NA
AYS86886.1\|1582289_1583936_-	Fumarate hydratase class I	NA	NA	NA	NA
AYS86887.1\|1584135_1585311_+	mannose-6-phosphate isomerase	NA	NA	NA	NA
AYS86888.1\|1585413_1586922_+	hypothetical protein	NA	NA	NA	NA
AYS86889.1\|1587627_1588629_+	adenosine deaminase	NA	NA	NA	NA
AYS86890.1\|1588702_1589818_-	oxidoreductase	NA	NA	NA	NA
AYS86891.1\|1589920_1590076_+	hypothetical protein	NA	NA	NA	NA
AYS86892.1\|1590374_1590590_+	oriC-binding nucleoid-associated protein	NA	NA	NA	NA
AYS86893.1\|1590678_1591119_+	hypothetical protein	NA	NA	NA	NA
AYS86894.1\|1591195_1591777_+	Na(+)-translocating NADH-quinone reductase subunit E	NA	NA	NA	NA
AYS86895.1\|1591776_1592355_+	ferredoxin-like protein	NA	NA	NA	NA
AYS86896.1\|1592347_1594369_+	NADH reducing dehydrogenase	NA	NA	NA	NA
AYS86897.1\|1594369_1595428_+	electron transport complex protein RnfD	NA	NA	NA	NA
AYS86898.1\|1595431_1596052_+	electron transport complex protein RnfG	NA	NA	NA	NA
AYS86899.1\|1596054_1596747_+	electron transport complex protein RsxE	NA	NA	NA	NA
AYS86900.1\|1596746_1597382_+	endonuclease III	NA	NA	NA	NA
AYS86901.1\|1597982_1599488_+	proton/oligopeptide symporter	NA	NA	NA	NA
AYS86902.1\|1599592_1600198_+	glutathione S-transferase	NA	NA	NA	NA
AYS86903.1\|1600946_1602221_-\|tRNA	tyrosyl-tRNA synthetase	K4F5T3	Cronobacter_phage	1.6e-85	42.1

DBSCAN-SWA_3

1783258 : 1787670

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS87087.1\|1783258_1783498_+	virulence protein	K7P6H1	Enterobacteria_phage	5.5e-32	87.3
AYS87088.1\|1784370_1785180_+	toxin-like protein	A5LH53	Enterobacteria_phage	2.1e-62	50.0
AYS87089.1\|1785252_1785630_+	hypothetical protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
AYS87090.1\|1785777_1786320_-	hypothetical protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
AYS87091.1\|1786511_1787240_-	pertussis toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	4.9e-63	53.3
AYS87092.1\|1787256_1787670_-	pertussis-like toxin subunit	A0A0U2KD34	Escherichia_phage	1.4e-19	38.6

DBSCAN-SWA_4

1991523 : 1998757

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS87282.1\|1991523_1992954_-	DNA-cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
AYS87283.1\|1993027_1993723_-	hypothetical protein	S4W232	Pandoravirus	2.1e-07	27.5
AYS87284.1\|1993802_1994114_-	hypothetical protein	NA	NA	NA	NA
AYS87285.1\|1994764_1995949_+	outer membrane protein S1	Q1MVN1	Enterobacteria_phage	1.4e-107	56.4
AYS87286.1\|1996408_1996621_-	cold shock protein	A0A1W6JNX5	Morganella_phage	1.5e-20	70.0
AYS87287.1\|1997066_1998335_-	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	3.3e-224	91.2
AYS87288.1\|1998337_1998757_-	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

DBSCAN-SWA_5

2105057 : 2115564

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS87385.1\|2105057_2106371_-	dehydratase RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
AYS87386.1\|2106397_2107477_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.1
AYS87387.1\|2107481_2108255_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AYS87388.1\|2108270_2109245_-	reductase RfbI	NA	NA	NA	NA
AYS87389.1\|2109250_2109802_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.7e-53	58.6
AYS87390.1\|2109802_2110681_-	TDP-glucose pyrophosphorylase	I7I009	Enterobacteria_phage	2.3e-107	64.8
AYS87391.1\|2110728_2111628_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.9e-31	36.3
AYS87392.1\|2111627_2112713_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
AYS87393.1\|2113089_2113983_-	UTP-glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AYS87394.1\|2114160_2115564_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.1e-21	26.5

DBSCAN-SWA_6

2191455 : 2200626

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS87453.1\|2191455_2193489_+\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	6.1e-55	26.9
AYS87454.1\|2193729_2194188_+	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AYS87455.1\|2194359_2194890_+	lipoprotein	NA	NA	NA	NA
AYS87456.1\|2194946_2195414_-	hypothetical protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AYS87457.1\|2195460_2196180_-	two-component system response regulator	NA	NA	NA	NA
AYS87458.1\|2196176_2197862_-	two-component system sensor kinase	Q9EYF3	Enterobacteria_phage	1.1e-278	91.1
AYS87459.1\|2198084_2198816_+	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AYS87460.1\|2198875_2198983_+	hypothetical protein	NA	NA	NA	NA
AYS87461.1\|2198963_2199695_-	ABC transporter permease	NA	NA	NA	NA
AYS87462.1\|2199678_2200626_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2

DBSCAN-SWA_7

2736142 : 2749534

Salmonella_phage(70.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS87891.1\|2736142_2736361_-	hypothetical protein	Q53ZE7	Salmonella_virus	1.9e-18	71.9
AYS87892.1\|2736451_2737552_-	hypothetical protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
AYS87893.1\|2737548_2738034_-\|tail	bacteriophage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
AYS87894.1\|2738030_2741108_-\|tail	bacteriophage tail protein	E5G6Q1	Salmonella_phage	0.0e+00	63.0
AYS87895.1\|2741100_2741220_-	bacteriophage protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
AYS87896.1\|2741234_2741537_-\|tail	phage tail protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
AYS87897.1\|2741591_2742107_-\|tail	major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
AYS87898.1\|2742116_2743289_-\|tail	bacteriophage major tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
AYS87899.1\|2743431_2744004_-	DNA-invertase	A0A0F7LA37	Escherichia_phage	1.4e-86	86.3
AYS87900.1\|2744681_2745797_+	glycosyltransferase	NA	NA	NA	NA
AYS87901.1\|2745877_2749534_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	1.0e-44	28.6

DBSCAN-SWA_8

3066695 : 3110398

Bacillus_virus(33.33%)

bacteriocin,transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS88188.1\|3066695_3067154_-\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYS88189.1\|3067343_3068423_-	fructose 1,6-bisphosphate aldolase	NA	NA	NA	NA
AYS88190.1\|3068524_3069688_-	phosphoglycerate kinase	NA	NA	NA	NA
AYS88191.1\|3069709_3070756_-	D-erythrose 4-phosphate dehydrogenase	NA	NA	NA	NA
AYS88192.1\|3071129_3071555_+	hypothetical protein	NA	NA	NA	NA
AYS88193.1\|3071580_3072159_+	hypothetical protein	NA	NA	NA	NA
AYS88194.1\|3072192_3072867_+	hypothetical protein	NA	NA	NA	NA
AYS88195.1\|3072848_3073532_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
AYS88196.1\|3073525_3074182_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.6e-09	28.6
AYS88197.1\|3074286_3074745_-\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYS88198.1\|3074933_3076925_-	transketolase	NA	NA	NA	NA
AYS88199.1\|3077200_3077959_+\|protease	metalloprotease	NA	NA	NA	NA
AYS88200.1\|3078059_3078980_-	agmatine ureohydrolase	NA	NA	NA	NA
AYS88201.1\|3079207_3081184_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
AYS88202.1\|3081192_3081324_-	hypothetical protein	NA	NA	NA	NA
AYS88203.1\|3081618_3081918_-	membrane protein	NA	NA	NA	NA
AYS88204.1\|3081973_3083128_+	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	1.5e-130	63.9
AYS88205.1\|3083620_3085015_+	galactose-proton symport	NA	NA	NA	NA
AYS88206.1\|3085093_3085591_+	hypothetical protein	NA	NA	NA	NA
AYS88207.1\|3085686_3086394_+	endonuclease I	NA	NA	NA	NA
AYS88208.1\|3086470_3087202_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
AYS88209.1\|3087221_3088169_+	glutathione synthetase	NA	NA	NA	NA
AYS88210.1\|3088384_3088948_+	hypothetical protein	NA	NA	NA	NA
AYS88211.1\|3088947_3089364_+	Holliday junction resolvase	NA	NA	NA	NA
AYS88212.1\|3089410_3090097_-	global regulatory protein	NA	NA	NA	NA
AYS88213.1\|3090226_3091207_-	type II secretion system ATP-binding protein	NA	NA	NA	NA
AYS88214.1\|3091224_3091929_+	hypothetical protein	NA	NA	NA	NA
AYS88215.1\|3091947_3092514_+	hypothetical protein	NA	NA	NA	NA
AYS88216.1\|3092510_3092801_+	hypothetical protein	NA	NA	NA	NA
AYS88217.1\|3092808_3093402_+	dITP/XTP pyrophosphatase	NA	NA	NA	NA
AYS88218.1\|3093394_3094531_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
AYS88219.1\|3094621_3095629_-	hypothetical protein	NA	NA	NA	NA
AYS88220.1\|3095761_3096808_-	L-asparaginase	NA	NA	NA	NA
AYS88221.1\|3097126_3097585_+\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYS88222.1\|3097707_3098427_-	hypothetical protein	NA	NA	NA	NA
AYS88223.1\|3098476_3098803_-	hypothetical protein	NA	NA	NA	NA
AYS88224.1\|3098802_3099522_-\|tRNA	tRNA m(7)G46 methyltransferase	NA	NA	NA	NA
AYS88225.1\|3099676_3100729_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
AYS88226.1\|3100756_3101032_+	oxidative damage protection protein	NA	NA	NA	NA
AYS88227.1\|3101144_3102230_+	membrane-bound lytic murein transglycosylase C	A0A0H3V0Q1	Geobacillus_virus	5.8e-12	39.0
AYS88228.1\|3102446_3103703_+	nucleoside permease	NA	NA	NA	NA
AYS88229.1\|3106313_3107021_+	hypothetical protein	NA	NA	NA	NA
AYS88230.1\|3109610_3109877_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AYS88231.1\|3110119_3110398_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

DBSCAN-SWA_9

3488249 : 3526307

Salmonella_phage(82.05%)

portal,integrase,plate,capsid,transposase,tail,terminase

attL 3483213:3483227|attR 3495379:3495393

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3483213:3483227	attL	NA	NA	NA	NA
AYS88560.1\|3488249_3489896_-	acetolactate synthase large subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	9.0e-65	31.5
AYS88561.1\|3490035_3490134_-	ilvGMEDA operon attenuator peptide	NA	NA	NA	NA
AYS88562.1\|3490389_3490719_+	hypothetical protein	NA	NA	NA	NA
AYS88563.1\|3490759_3491812_-\|integrase	bacteriophage integrase	A0A218M4I3	Erwinia_phage	3.6e-107	57.3
AYS88564.1\|3492207_3492777_-	repressor protein	A0A1S6KZZ7	Salmonella_phage	2.5e-38	43.4
AYS88565.1\|3492902_3493124_+	hypothetical protein	NA	NA	NA	NA
AYS88566.1\|3493156_3493666_+	regulatory protein cII	E5G6L3	Salmonella_phage	5.8e-87	98.8
AYS88567.1\|3493840_3494065_+	hypothetical protein	NA	NA	NA	NA
AYS88568.1\|3494087_3494429_+	hypothetical protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
AYS88569.1\|3494496_3494730_+	hypothetical protein	E5G6L6	Salmonella_phage	2.0e-31	94.8
AYS88570.1\|3494729_3494957_+	hypothetical protein	E5G6L7	Salmonella_phage	2.7e-36	100.0
AYS88571.1\|3494953_3495811_+	DNA adenine methylase	E5G6L8	Salmonella_phage	3.5e-161	97.2
3495379:3495393	attR	NA	NA	NA	NA
AYS88572.1\|3495807_3498222_+	endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
AYS88573.1\|3498375_3498564_+	hypothetical protein	E5G6M0	Salmonella_phage	7.9e-26	95.2
AYS88574.1\|3500531_3501446_+	hypothetical protein	NA	NA	NA	NA
AYS88575.1\|3501442_3502183_+	hypothetical protein	NA	NA	NA	NA
AYS88576.1\|3502217_3503255_-\|capsid,portal	capsid portal protein	A0A1S6KZW5	Salmonella_phage	1.3e-173	89.5
AYS88577.1\|3503254_3505021_-\|terminase	terminase subunit	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
AYS88578.1\|3505163_3505997_+\|capsid	capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.5e-121	90.6
AYS88579.1\|3506013_3507072_+\|capsid	major capsid protein	E5G6M6	Salmonella_phage	1.4e-180	93.1
AYS88580.1\|3507075_3507726_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
AYS88581.1\|3507758_3508286_+\|capsid	capsid completion protein	A0A1S6KZW8	Salmonella_phage	2.1e-76	89.0
AYS88582.1\|3508285_3508489_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.4e-31	92.5
AYS88583.1\|3508492_3508708_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
AYS88584.1\|3508727_3509201_+	lysozyme	E5G6N1	Salmonella_phage	3.7e-80	91.0
AYS88585.1\|3509202_3509580_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.3e-16	40.0
AYS88586.1\|3509576_3510005_+	regulatory protein	E5G6N2	Salmonella_phage	2.2e-47	77.3
AYS88587.1\|3510100_3510532_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.5e-72	95.1
AYS88588.1\|3510524_3510971_+\|tail	phage tail completion protein	A0A1S6L001	Salmonella_phage	6.6e-63	85.6
AYS88589.1\|3511039_3511618_+\|plate	phage baseplate assembly protein	A0A1S6KZX7	Salmonella_phage	5.5e-94	86.5
AYS88590.1\|3511614_3511974_+\|plate	phage baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	6.1e-51	84.9
AYS88591.1\|3511960_3512869_+\|plate	phage baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	1.3e-142	89.7
AYS88592.1\|3512861_3513467_+\|tail	phage tail protein	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
AYS88593.1\|3513463_3514978_+\|tail	variable tail fiber protein	M1TAS6	Escherichia_phage	4.4e-199	73.0
AYS88594.1\|3514977_3515571_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	9.2e-60	64.3
AYS88595.1\|3515542_3515983_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	3.1e-52	68.0
AYS88596.1\|3516405_3516978_+	DNA-invertase	A0A0F7LA37	Escherichia_phage	1.4e-86	86.3
AYS88597.1\|3517120_3518293_+\|tail	major tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
AYS88598.1\|3518302_3518818_+\|tail	major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
AYS88599.1\|3518872_3519175_+\|tail	phage tail protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
AYS88600.1\|3519189_3519309_+	bacteriophage protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
AYS88601.1\|3519301_3522379_+\|tail	bacteriophage tail protein	E5G6Q1	Salmonella_phage	0.0e+00	63.0
AYS88602.1\|3522375_3522861_+\|tail	bacteriophage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
AYS88603.1\|3522857_3523958_+	hypothetical protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
AYS88604.1\|3524048_3524267_+	hypothetical protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
AYS88605.1\|3525848_3526307_+\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA

DBSCAN-SWA_10

4441841 : 4516005

Salmonella_phage(82.98%)

portal,integrase,plate,capsid,tail,terminase

attL 4503342:4503358|attR 4516164:4516180

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS89376.1\|4441841_4443791_+	hypothetical protein	A0A2K9V411	Faecalibacterium_phage	5.9e-31	38.3
AYS89377.1\|4443862_4444771_+	hypothetical protein	NA	NA	NA	NA
AYS89378.1\|4444844_4445744_+	hypothetical protein	NA	NA	NA	NA
AYS89379.1\|4445785_4446145_+	hypothetical protein	NA	NA	NA	NA
AYS89380.1\|4446244_4446514_-	hypothetical protein	NA	NA	NA	NA
AYS89381.1\|4446645_4447920_-	UV protection protein	F1C5A5	Cronobacter_phage	7.5e-152	62.0
AYS89382.1\|4448139_4448517_+	hypothetical protein	NA	NA	NA	NA
AYS89383.1\|4448603_4448822_-	hypothetical protein	E5G6Q4	Salmonella_phage	4.9e-27	75.0
AYS89384.1\|4448889_4449990_-	hypothetical protein	E5G6Q3	Salmonella_phage	7.9e-190	92.1
AYS89385.1\|4449986_4450472_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	9.4e-71	93.2
AYS89386.1\|4450471_4453252_-	hypothetical protein	A0A2H4JGB2	uncultured_Caudovirales_phage	3.5e-125	41.1
AYS89387.1\|4453244_4453364_-	hypothetical protein	E5G6Q0	Salmonella_phage	1.2e-14	94.9
AYS89388.1\|4453378_4453681_-\|tail	phage tail protein	E5G6P9	Salmonella_phage	3.3e-42	93.9
AYS89389.1\|4453735_4454251_-\|tail	major tail tube protein	E5G6P8	Salmonella_phage	2.7e-92	99.4
AYS89390.1\|4454260_4455433_-\|tail	major tail sheath protein	A0A1S6KZY7	Salmonella_phage	9.8e-223	99.5
AYS89391.1\|4455967_4456690_+	invasion-associated secreted protein	NA	NA	NA	NA
AYS89392.1\|4456887_4457295_-\|tail	phage tail fiber protein	A0A1B0V844	Salmonella_phage	4.1e-59	84.2
AYS89393.1\|4457301_4458921_-\|tail	phage tail fiber protein	E5G6P0	Salmonella_phage	2.7e-154	90.9
AYS89394.1\|4458917_4459523_-\|tail	phage tail protein	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
AYS89395.1\|4459515_4460424_-\|plate	phage baseplate assembly protein	E5G6N8	Salmonella_phage	5.2e-155	97.0
AYS89396.1\|4460410_4460770_-\|plate	phage baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	6.8e-58	96.6
AYS89397.1\|4460766_4461345_-\|plate	phage baseplate assembly protein	E5G6N6	Salmonella_phage	3.9e-108	99.5
AYS89398.1\|4461413_4461860_-\|tail	phage tail completion protein	A0A1S6L001	Salmonella_phage	2.2e-66	90.4
AYS89399.1\|4461852_4462284_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	2.5e-75	98.6
AYS89400.1\|4462379_4462805_-	regulatory protein	A0A1S6KZX8	Salmonella_phage	2.5e-67	97.9
AYS89401.1\|4462804_4463182_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.5e-60	99.2
AYS89402.1\|4463186_4463657_-	lysozyme	A0A1S6KZY9	Salmonella_phage	1.0e-85	97.4
AYS89403.1\|4463676_4463892_-	hypothetical protein	E5G6N0	Salmonella_phage	3.8e-32	98.6
AYS89404.1\|4463895_4464099_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	3.8e-34	100.0
AYS89405.1\|4464098_4464563_-\|capsid	capsid completion protein	A0A1S6KZW8	Salmonella_phage	2.4e-84	98.1
AYS89406.1\|4464656_4465307_-\|terminase	phage terminase	E5G6M7	Salmonella_phage	2.4e-114	99.5
AYS89407.1\|4465310_4466375_-\|capsid	major capsid protein	A0A1S6KZZ3	Salmonella_phage	1.3e-194	98.3
AYS89408.1\|4466391_4467225_-\|capsid	capsid scaffolding protein	E5G6M5	Salmonella_phage	6.1e-126	87.4
AYS89409.1\|4467367_4469134_+\|terminase	terminase subunit	A0A1S6KZW3	Salmonella_phage	0.0e+00	96.4
AYS89410.1\|4469130_4470177_+\|capsid,portal	capsid portal protein	A0A1S6KZW5	Salmonella_phage	2.1e-176	86.6
AYS89411.1\|4470225_4470921_-	hypothetical protein	NA	NA	NA	NA
AYS89412.1\|4470940_4472005_-	hypothetical protein	NA	NA	NA	NA
AYS89413.1\|4472001_4473066_-	hypothetical protein	NA	NA	NA	NA
AYS89414.1\|4473990_4474320_-	hypothetical protein	A0A1S6L028	Salmonella_phage	6.2e-50	90.8
AYS89415.1\|4474316_4476386_-	bacteriophage replication protein A	A0A1S6L028	Salmonella_phage	0.0e+00	95.9
AYS89416.1\|4476376_4477237_-	DNA adenine methylase	E5G6L8	Salmonella_phage	3.4e-132	81.8
AYS89417.1\|4477233_4477818_-	exonuclease	A0A1S6L012	Salmonella_phage	1.1e-76	73.7
AYS89418.1\|4477814_4478042_-	hypothetical protein	A0A1S6L007	Salmonella_phage	1.0e-35	94.7
AYS89419.1\|4478041_4478275_-	hypothetical protein	A0A1S6L021	Salmonella_phage	9.8e-26	84.4
AYS89420.1\|4478342_4478684_-	hypothetical protein	A0A1S6L019	Salmonella_phage	4.6e-56	99.1
AYS89421.1\|4478647_4478848_-	hypothetical protein	A0A1S6L005	Salmonella_phage	4.6e-32	97.0
AYS89422.1\|4478855_4479365_-	phage regulatory protein	A0A1S6L008	Salmonella_phage	1.3e-83	94.1
AYS89423.1\|4479397_4479640_-	phage regulatory protein	A0A1S6KZZ6	Salmonella_phage	2.3e-38	98.8
AYS89424.1\|4479756_4480389_+	phage repressor protein cI	A0A1S6KZZ7	Salmonella_phage	1.4e-66	58.6
AYS89425.1\|4480392_4481418_+\|integrase	phage integrase	A0A1S6L016	Salmonella_phage	2.7e-200	98.2
AYS89426.1\|4481524_4481878_-	protein samA'	I6S1S3	Salmonella_phage	6.7e-10	59.3
AYS89427.1\|4482494_4482782_+	hypothetical protein	NA	NA	NA	NA
AYS89428.1\|4482792_4483683_+	methyltransferase	NA	NA	NA	NA
AYS89429.1\|4483682_4484429_+	hypothetical protein	NA	NA	NA	NA
AYS89430.1\|4484730_4486701_-	Vi polysaccharide exporter protein	NA	NA	NA	NA
AYS89431.1\|4486720_4488025_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA
AYS89432.1\|4488047_4488743_-	Vi polysaccharide exporter ATP-binding protein	NA	NA	NA	NA
AYS89433.1\|4488768_4489563_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA
AYS89434.1\|4489572_4490640_-	Vi polysaccharide exporter protein	NA	NA	NA	NA
AYS89435.1\|4490684_4492421_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA
AYS89436.1\|4492420_4494916_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA
AYS89437.1\|4494939_4495986_-	Vi polysaccharide biosynthesis epimerase	A0A2K9L0I7	Tupanvirus	1.4e-74	45.0
AYS89438.1\|4495988_4497266_-	Vi polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase	M1HYW7	Paramecium_bursaria_Chlorella_virus	1.3e-21	26.7
AYS89439.1\|4497510_4498050_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA
AYS89440.1\|4498903_4500415_+	DNA helicase	A0A126DN25	Acinetobacter_phage	2.0e-42	29.0
AYS89441.1\|4500398_4501988_+	hypothetical protein	NA	NA	NA	NA
AYS89442.1\|4502151_4503165_+\|integrase	phage integrase	NA	NA	NA	NA
4503342:4503358	attL	NA	NA	NA	NA
AYS89443.1\|4503591_4503885_+	hypothetical protein	NA	NA	NA	NA
AYS89444.1\|4503881_4504370_+	hypothetical protein	NA	NA	NA	NA
AYS89445.1\|4504549_4505002_-	hypothetical protein	NA	NA	NA	NA
AYS89446.1\|4510224_4510686_+	hypothetical protein	NA	NA	NA	NA
AYS89447.1\|4510682_4510904_+	transcriptional regulator	A0A2I7S995	Vibrio_phage	4.6e-17	58.3
AYS89448.1\|4511760_4512543_+	hypothetical protein	NA	NA	NA	NA
AYS89449.1\|4513169_4513394_-	hypothetical protein	NA	NA	NA	NA
AYS89450.1\|4513523_4514435_-	hypothetical protein	NA	NA	NA	NA
AYS89451.1\|4514745_4516005_-\|integrase	bacteriophage integrase	B7SYF8	Stenotrophomonas_phage	3.2e-78	41.7
4516164:4516180	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4658257 : 4668516

Enterobacteria_phage(77.78%)

capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS89588.1\|4658257_4659334_-	protein kinase	A0A2H4UU60	Bodo_saltans_virus	7.8e-17	28.2
AYS89589.1\|4659330_4660404_-	protein kinase	G9BWE0	Planktothrix_phage	6.5e-56	44.7
AYS89590.1\|4660378_4661542_-	hypothetical protein	NA	NA	NA	NA
AYS89591.1\|4661817_4662384_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.8e-60	64.9
AYS89592.1\|4662399_4662639_-	hypothetical protein	Q7M294	Enterobacteria_phage	3.7e-20	60.5
AYS89593.1\|4662642_4663503_-\|capsid	phage capsid protein	NA	NA	NA	NA
AYS89594.1\|4663925_4664249_+	phage DNA binding protein	Q7M299	Enterobacteria_phage	3.6e-26	70.0
AYS89595.1\|4664232_4664733_+	hypothetical protein	Q7M2A7	Enterobacteria_phage	9.8e-31	70.4
AYS89596.1\|4664729_4664957_+	hypothetical protein	NA	NA	NA	NA
AYS89597.1\|4664953_4665274_+	P4 phage protein	NA	NA	NA	NA
AYS89598.1\|4665288_4665963_+	bacteriophage P4 DNA primase	Q7M2A8	Enterobacteria_phage	1.4e-85	75.1
AYS89599.1\|4665959_4667621_+	hypothetical protein	Q7M2A8	Enterobacteria_phage	1.9e-296	90.2
AYS89600.1\|4668357_4668516_+	recombinase	Q7M297	Enterobacteria_phage	3.9e-10	57.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage