CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029902	Salmonella enterica subsp. enterica serovar Typhi strain 311189_268103 chromosome, complete genome	1 crisprs	DEDDh,WYL,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	0	3	12	0
CP029903	Salmonella enterica subsp. enterica serovar Typhi strain 311189_268103 plasmid pk88, complete sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029902_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029902_1

2923883-2924277

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

6 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of CP029902_1

>merge|CP029902|1|2923883-2924277|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGGCGCGGGGAACACGGACAGCAACCCGTGTCGGATATCAGACAGATCGGTTTATCCCCGCTGGCGCGGGGAACACACGCGAATCGCCAATCGCCGCCGCGTGAATTGCGGTTTATCCCCGCTGGCGCGGGGAACACCCACGATGTATGCCGACCGTGATTTTTACCGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGATACGCCTTTACGTCGCCCTCTTTGGCGCGCGGTTTATCCCCGCTGGCGCGGGGAACACATTAAAAAAGATTAATGTTGGTTATAGTTTTACGGTTTATCCCCGCTGGTGCGGGGAACACTAAAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGATCGG

>CP029902|1|1|2923883-2924277|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GGACAGCAACCCGTGTCGGATATCAGACAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAAAAAAGATTAATGTTGGTTATAGTTTTA
CGGTTTATCCCCGCTGGTGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGATCGG

>CP029902|1|1|2923883-2924277|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GGACAGCAACCCGTGTCGGATATCAGACAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAAAAAAGATTAATGTTGGTTATAGTTTTA
CGGTTTATCCCCGCTGGTGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGATCGG

>CP029902|1|1|2923944-2924216|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAAAAAAGATTAATGTTGGTTATAGTTTTA
CGGTTTATCCCCGCTGGTGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP029902.1\|AYS78734.1\|2926304_2927030_-\|CRISPR-associated-protein-Cas5	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP029902.1\|AYS78730.1\|2922821_2923868_+\|alkaline-phosphatase-isozyme-conversion-protein	unknown	unknown	gnl\|CDD\|182299
CP029902.1\|AYS78726.1\|2919247_2919604_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371891
CP029902.1\|AYS78725.1\|2918745_2919057_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP029902.1\|AYS78737.1\|2928739_2930275_-\|Cse1-family-CRISPR-associated-protein	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP029902.1\|AYS78732.1\|2924683_2925601_-\|CRISPR/Cas-system-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP029902.1\|AYS78724.1\|2918016_2918727_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP029902.1\|AYS78736.1\|2928120_2928723_-\|CRISPR/Cas-system-associated-protein-Cse2	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
CP029902.1\|AYS78723.1\|2917537_2918017_-\|2C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP029902.1\|AYS78733.1\|2925600_2926305_-\|CRISPR/Cas-system-associated-RAMP-superfamily-protein	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
CP029902.1\|AYS78729.1\|2921662_2922571_-\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235375
CP029902.1\|AYS78728.1\|2920213_2921653_-\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
CP029902.1\|AYS78721.1\|2915749_2916511_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP029902.1\|AYS78722.1\|2916491_2917541_-\|tRNA-pseudouridine-synthase-D	unknown	unknown	gnl\|CDD\|234884
CP029902.1\|AYS78735.1\|2927039_2928104_-\|Cse4-family-CRISPR-associated-protein	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP029902.1\|AYS78739.1\|2933713_2934667_+\|pathogenicity-island-1-effector-protein-SopD	unknown	unknown	gnl\|CDD\|185277
CP029902.1\|AYS78740.1\|2934754_2935489_-\|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase	unknown	unknown	gnl\|CDD\|234997
CP029902.1\|AYS78731.1\|2924387_2924681_-\|ssRNA-endonuclease	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP029902.1\|AYS78727.1\|2919621_2920227_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP029902.1\|AYS78738.1\|2930432_2930606_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP029902.1\|AYS78734.1\|2926304_2927030_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.27863e-48
CP029902.1\|AYS78730.1\|2922821_2923868_+\|alkaline-phosphatase-isozyme-conversion-protein	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP029902.1\|AYS78726.1\|2919247_2919604_-\|hypothetical-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP029902.1\|AYS78725.1\|2918745_2919057_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP029902.1\|AYS78737.1\|2928739_2930275_-\|Cse1-family-CRISPR-associated-protein	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP029902.1\|AYS78732.1\|2924683_2925601_-\|CRISPR/Cas-system-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.77553e-155
CP029902.1\|AYS78724.1\|2918016_2918727_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
CP029902.1\|AYS78736.1\|2928120_2928723_-\|CRISPR/Cas-system-associated-protein-Cse2	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.74874e-39
CP029902.1\|AYS78723.1\|2917537_2918017_-\|2C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP029902.1\|AYS78733.1\|2925600_2926305_-\|CRISPR/Cas-system-associated-RAMP-superfamily-protein	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	2.23447e-89
CP029902.1\|AYS78729.1\|2921662_2922571_-\|ATP-sulfurylase	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP029902.1\|AYS78728.1\|2920213_2921653_-\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP029902.1\|AYS78721.1\|2915749_2916511_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP029902.1\|AYS78722.1\|2916491_2917541_-\|tRNA-pseudouridine-synthase-D	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP029902.1\|AYS78735.1\|2927039_2928104_-\|Cse4-family-CRISPR-associated-protein	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.07119e-119
CP029902.1\|AYS78739.1\|2933713_2934667_+\|pathogenicity-island-1-effector-protein-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP029902.1\|AYS78731.1\|2924387_2924681_-\|ssRNA-endonuclease	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.81067e-65
CP029902.1\|AYS78727.1\|2919621_2920227_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP029902.1\|AYS78740.1\|2934754_2935489_-\|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.17372e-138

>CP029902.1|AYS78730.1|2922821_2923868_+|alkaline-phosphatase-isozyme-conversion-protein
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLNNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP029902.1|AYS78729.1|2921662_2922571_-|ATP-sulfurylase
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP029902.1|AYS78728.1|2920213_2921653_-|ATP-sulfurylase
MNTILAQQIASEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNPDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEVCAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP029902.1|AYS78727.1|2919621_2920227_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP029902.1|AYS78726.1|2919247_2919604_-|hypothetical-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP029902.1|AYS78725.1|2918745_2919057_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP029902.1|AYS78724.1|2918016_2918727_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP029902.1|AYS78723.1|2917537_2918017_-|2C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP029902.1|AYS78722.1|2916491_2917541_-|tRNA-pseudouridine-synthase-D
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADVLAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP029902.1|AYS78721.1|2915749_2916511_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>CP029902.1|AYS78731.1|2924387_2924681_-|ssRNA-endonuclease
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>CP029902.1|AYS78732.1|2924683_2925601_-|CRISPR/Cas-system-associated-protein-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWGGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFEIVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSHPIAIPLPVALGDSGHRST
>CP029902.1|AYS78733.1|2925600_2926305_-|CRISPR/Cas-system-associated-RAMP-superfamily-protein
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHSLFLIETKLFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>CP029902.1|AYS78734.1|2926304_2927030_-|CRISPR-associated-protein-Cas5
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>CP029902.1|AYS78735.1|2927039_2928104_-|Cse4-family-CRISPR-associated-protein
MIMTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFDRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>CP029902.1|AYS78736.1|2928120_2928723_-|CRISPR/Cas-system-associated-protein-Cse2
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERSRIRWANEYLSTSRGK
>CP029902.1|AYS78737.1|2928739_2930275_-|Cse1-family-CRISPR-associated-protein
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMNKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>CP029902.1|AYS78738.1|2930432_2930606_-|hypothetical-protein
MKSIINWDTGNWPVFLSGLGYPRWRGERCAIKTASTVYPIILGNVLKITDNYKKYIV
>CP029902.1|AYS78739.1|2933713_2934667_+|pathogenicity-island-1-effector-protein-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP029902.1|AYS78740.1|2934754_2935489_-|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWAQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029902_1	1.3\|2924034\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924034-2924065	32	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	453979-454010	5	0.844
CP029902_1	1.3\|2924034\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924034-2924065	32	NZ_KU130294	Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence	251896-251927	5	0.844
CP029902_1	1.3\|2924034\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924034-2924065	32	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	6517-6548	5	0.844
CP029902_1	1.3\|2924034\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924034-2924065	32	NZ_CP039989	Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence	238872-238903	5	0.844
CP029902_1	1.3\|2924034\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924034-2924065	32	NZ_MN433457	Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence	235351-235382	5	0.844
CP029902_1	1.3\|2924034\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924034-2924065	32	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	378779-378810	5	0.844
CP029902_1	1.3\|2924034\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924034-2924065	32	NZ_CP045003	Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence	82539-82570	5	0.844
CP029902_1	1.3\|2924034\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924034-2924065	32	NZ_CP045917	Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence	224279-224310	5	0.844
CP029902_1	1.3\|2924034\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924034-2924065	32	MF344571	Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence	221127-221158	5	0.844
CP029902_1	1.3\|2924034\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924034-2924065	32	MF344569	Pseudomonas aeruginosa plasmid p12939-PER, complete sequence	284046-284077	5	0.844
CP029902_1	1.3\|2924034\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924034-2924065	32	MF344570	Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence	219145-219176	5	0.844
CP029902_1	1.3\|2924034\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924034-2924065	32	NZ_CP039294	Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence	55495-55526	5	0.844
CP029902_1	1.3\|2924034\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924034-2924065	32	CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	376216-376247	5	0.844
CP029902_1	1.3\|2924034\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924034-2924065	32	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	134871-134902	5	0.844
CP029902_1	1.3\|2924034\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924034-2924065	32	NZ_CP016215	Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence	88841-88872	5	0.844
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	KJ019071	Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome	59609-59640	7	0.781
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	MN694480	Marine virus AFVG_250M133, complete genome	20886-20917	7	0.781
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	MN694671	Marine virus AFVG_250M145, complete genome	23163-23194	7	0.781
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	MN694753	Marine virus AFVG_250M144, complete genome	25459-25490	7	0.781
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	MN694231	Marine virus AFVG_250M143, complete genome	21163-21194	7	0.781
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	MN693981	Marine virus AFVG_250M146, complete genome	18773-18804	7	0.781
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	NZ_CP046723	Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence	559039-559070	8	0.75
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	214654-214685	8	0.75
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	NZ_CP034149	Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence	578776-578807	8	0.75
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	592092-592123	8	0.75
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	MN694115	Marine virus AFVG_250M901, complete genome	49467-49498	8	0.75
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	NZ_CP046630	Streptococcus equinus strain CNU G6 plasmid p1_CNU_G6, complete sequence	66427-66458	9	0.719
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	NZ_CP046920	Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence	70206-70237	9	0.719
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	MN694046	Marine virus AFVG_250M906, complete genome	22321-22352	9	0.719
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	MN693836	Marine virus AFVG_250M487, complete genome	10882-10913	9	0.719
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	MN693891	Marine virus AFVG_250M480, complete genome	21841-21872	9	0.719
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	MK268344	Salmonella phage Munch, complete genome	122526-122557	9	0.719
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	MN694071	Marine virus AFVG_250M483, complete genome	16976-17007	9	0.719
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	MN694294	Marine virus AFVG_250M486, complete genome	8469-8500	9	0.719
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	MN693751	Marine virus AFVG_250M485, complete genome	13096-13127	9	0.719
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	MN694002	Marine virus AFVG_250M481, complete genome	18787-18818	9	0.719
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	MN694650	Marine virus AFVG_250M482, complete genome	20198-20229	9	0.719
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	MN693906	Marine virus AFVG_250M905, complete genome	17506-17537	9	0.719
CP029902_1	1.5\|2924156\|32\|CP029902\|CRISPRCasFinder,CRT,PILER-CR	2924156-2924187	32	MN694711	Marine virus AFVG_250M484, complete genome	24974-25005	9	0.719
CP029902_1	1.6\|2924217\|32\|CP029902\|CRISPRCasFinder,CRT	2924217-2924248	32	KR052482	Sinorhizobium phage phiN3, complete genome	197290-197321	9	0.719

1. spacer 1.3|2924034|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

2. spacer 1.3|2924034|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU130294 (Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

3. spacer 1.3|2924034|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

4. spacer 1.3|2924034|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039989 (Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

5. spacer 1.3|2924034|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MN433457 (Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

6. spacer 1.3|2924034|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

7. spacer 1.3|2924034|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045003 (Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

8. spacer 1.3|2924034|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045917 (Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

9. spacer 1.3|2924034|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MF344571 (Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

10. spacer 1.3|2924034|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MF344569 (Pseudomonas aeruginosa plasmid p12939-PER, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

11. spacer 1.3|2924034|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MF344570 (Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

12. spacer 1.3|2924034|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039294 (Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

13. spacer 1.3|2924034|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

14. spacer 1.3|2924034|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015879 (Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

15. spacer 1.3|2924034|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016215 (Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

16. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to KJ019071 (Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aattacaatggttaatgttggttatagtttag	Protospacer
* * * ** *.******************* .

17. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MN694480 (Marine virus AFVG_250M133, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

18. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MN694671 (Marine virus AFVG_250M145, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

19. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MN694753 (Marine virus AFVG_250M144, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

20. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MN694231 (Marine virus AFVG_250M143, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

21. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MN693981 (Marine virus AFVG_250M146, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

22. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

23. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

24. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

25. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

26. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MN694115 (Marine virus AFVG_250M901, complete genome) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
attaaaaaatattaatcttggttcttccgtaa	Protospacer
********* ****** ****** *  . * *

27. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046630 (Streptococcus equinus strain CNU G6 plasmid p1_CNU_G6, complete sequence) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aagaaaaatgattaatgttgtttataataact	Protospacer
*  ***** *********** *****.*  .

28. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046920 (Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aagaaaaatgattaatgttgtttataataact	Protospacer
*  ***** *********** *****.*  .

29. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MN694046 (Marine virus AFVG_250M906, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

30. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MN693836 (Marine virus AFVG_250M487, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

31. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MN693891 (Marine virus AFVG_250M480, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

32. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MK268344 (Salmonella phage Munch, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
ggcagcattgattaatgatggttttagtttta	Protospacer
. .*. *  ******** ***** ********

33. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MN694071 (Marine virus AFVG_250M483, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

34. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MN694294 (Marine virus AFVG_250M486, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

35. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MN693751 (Marine virus AFVG_250M485, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

36. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MN694002 (Marine virus AFVG_250M481, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

37. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MN694650 (Marine virus AFVG_250M482, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

38. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MN693906 (Marine virus AFVG_250M905, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

39. spacer 1.5|2924156|32|CP029902|CRISPRCasFinder,CRT,PILER-CR matches to MN694711 (Marine virus AFVG_250M484, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

40. spacer 1.6|2924217|32|CP029902|CRISPRCasFinder,CRT matches to KR052482 (Sinorhizobium phage phiN3, complete genome) position: , mismatch: 9, identity: 0.719

taaaacaccggttgcgcaacctccgcggggat	CRISPR spacer
aacaacaccggttgcgaaacctacgcaaaaaa	Protospacer
 * ************* ***** ***....*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

930296 : 937608

Dickeya_phage(16.67%)

integrase,protease

attL 931547:931561|attR 942913:942927

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS76920.1\|930296_931415_+	hypothetical protein	A0A140XAI1	Dickeya_phage	8.1e-09	39.8
AYS76921.1\|931411_933358_+	macrolide transporter ATP-binding protein/permease	G9BWD6	Planktothrix_phage	2.0e-39	43.1
931547:931561	attL	NA	NA	NA	NA
AYS76922.1\|933487_933709_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AYS76923.1\|934032_934353_+\|protease	ATP-dependent Clp protease adaptor protein	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AYS76924.1\|934383_936660_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.8e-164	42.2
AYS76925.1\|937230_937608_-\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
942913:942927	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1001973 : 1129488

154

Salmonella_phage(62.75%)

terminase,integrase,transposase,protease,tail,tRNA

attL 1020561:1020596|attR 1065182:1065217

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS76972.1\|1001973_1003374_-\|tRNA	asparaginyl-tRNA synthetase	A0A2K9V902	Bandra_megavirus	4.5e-81	35.8
AYS76973.1\|1003574_1004036_-	transcriptional regulator	NA	NA	NA	NA
AYS76974.1\|1005814_1007248_+	ion:amino acid symporter	NA	NA	NA	NA
AYS76975.1\|1007328_1008531_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
AYS76976.1\|1008725_1010066_-\|integrase	integrase	S4TSP2	Salmonella_phage	7.9e-261	99.8
AYS76977.1\|1010062_1010311_-	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
AYS76978.1\|1010351_1010597_-	bacteriophage protein	S4TR31	Salmonella_phage	1.3e-36	96.2
AYS76979.1\|1010596_1011478_-	DNA methylase	A0A0M4R347	Salmonella_phage	1.2e-153	93.0
AYS76980.1\|1011474_1012539_-	bacteriophage protein	T1SBJ4	Salmonella_phage	6.3e-152	74.6
AYS76981.1\|1012616_1013297_-	exonuclease	A0A0M3ULE0	Salmonella_phage	1.9e-130	98.7
AYS76982.1\|1013293_1014079_-	bacteriophage recombination protein	A0A0M4RD39	Salmonella_phage	9.7e-150	99.6
AYS76983.1\|1014084_1014381_-	host-nuclease inhibitor protein	A0A0M5M5Z9	Salmonella_phage	4.4e-47	96.9
AYS76984.1\|1014471_1014672_-	prophage Kil protein	G8C7T2	Escherichia_phage	2.4e-12	48.4
AYS76985.1\|1014960_1015365_-	DNA-binding protein	H6WRX4	Salmonella_phage	7.1e-72	99.3
AYS76986.1\|1015696_1016071_+	DNA-binding protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
AYS76987.1\|1016155_1017139_+	bacteriophage protein	H6WRX7	Salmonella_phage	2.1e-162	99.7
AYS76988.1\|1017141_1017891_+	DNA replication protein	S4TNF5	Salmonella_phage	4.3e-139	100.0
AYS76989.1\|1017901_1018249_+	DNA-binding protein	H6WRX9	Salmonella_phage	9.1e-52	89.6
AYS76990.1\|1018245_1018602_+	hypothetical protein	T1SA95	Salmonella_phage	3.6e-59	91.5
AYS76991.1\|1018601_1019105_+	hypothetical protein	A0A0N7C1Y5	Escherichia_phage	9.9e-31	71.3
AYS76992.1\|1019101_1019845_+	Eaa protein	A0A1V0E5M5	Salmonella_phage	9.4e-46	60.8
AYS76993.1\|1019943_1020210_+	bacteriophage protein	S4TNF2	Salmonella_phage	1.5e-46	100.0
AYS76994.1\|1020365_1020599_+	XRE family transcriptional regulator	K7PM44	Enterobacteria_phage	2.1e-28	74.0
1020561:1020596	attL	NA	NA	NA	NA
AYS76995.1\|1020998_1021601_+	bacteriophage protein	A0A0M4QX23	Salmonella_phage	2.8e-109	98.5
AYS76996.1\|1021809_1022421_+	bacteriophage lambda protein NinG	A0A0M4RU10	Salmonella_phage	3.0e-90	97.5
AYS76997.1\|1022553_1023351_+	prophage antitermination protein	A0A0M4S661	Salmonella_phage	3.4e-150	99.2
AYS76998.1\|1023749_1024097_+	hypothetical protein	Q8SBE1	Shigella_phage	9.8e-46	80.4
AYS76999.1\|1024099_1024714_+	endolysin	Q8HA86	Salmonella_phage	7.6e-110	95.1
AYS77000.1\|1024710_1025253_+	hypothetical protein	NA	NA	NA	NA
AYS77001.1\|1025307_1025859_+	hypothetical protein	NA	NA	NA	NA
AYS77002.1\|1025919_1026672_+	hypothetical protein	A0A1I9KFG9	Aeromonas_phage	1.3e-15	33.3
AYS77003.1\|1026673_1028005_+\|terminase	terminase	A0A0U2JTW9	Escherichia_phage	6.4e-154	60.0
AYS77004.1\|1028016_1029438_+	hypothetical protein	A0A0U2S5X9	Escherichia_phage	1.2e-89	37.5
AYS77005.1\|1029434_1030259_+	hypothetical protein	A0A0U2I1R8	Escherichia_phage	1.4e-53	42.7
AYS77006.1\|1030271_1031891_+	NUDIX hydrolase	NA	NA	NA	NA
AYS77007.1\|1031906_1032767_+	hypothetical protein	NA	NA	NA	NA
AYS77008.1\|1032783_1033815_+	hypothetical protein	A0A0U2QQI2	Escherichia_phage	3.7e-72	45.8
AYS77009.1\|1033882_1034365_+	hypothetical protein	NA	NA	NA	NA
AYS77010.1\|1034361_1034790_+	hypothetical protein	A0A0U2S646	Escherichia_phage	1.3e-23	40.6
AYS77011.1\|1034786_1035221_+	hypothetical protein	NA	NA	NA	NA
AYS77012.1\|1035204_1036146_+	hypothetical protein	A0A0U2SH76	Escherichia_phage	1.1e-51	36.7
AYS77013.1\|1036151_1037546_+	hypothetical protein	A0A0U2KD19	Escherichia_phage	7.1e-71	38.1
AYS77014.1\|1037549_1037987_+	hypothetical protein	NA	NA	NA	NA
AYS77015.1\|1037986_1038574_+	hypothetical protein	NA	NA	NA	NA
AYS77016.1\|1038697_1040752_+	hypothetical protein	A0A2R3UAN6	Myoviridae_environmental_samples	2.2e-20	35.8
AYS77017.1\|1040751_1041468_+	hypothetical protein	A0A0U2JGI7	Escherichia_phage	1.3e-28	36.5
AYS77018.1\|1041464_1041740_+	hypothetical protein	NA	NA	NA	NA
AYS77019.1\|1041739_1042783_+	hypothetical protein	NA	NA	NA	NA
AYS77020.1\|1042779_1043496_+	hypothetical protein	NA	NA	NA	NA
AYS77021.1\|1043492_1043825_+	hypothetical protein	NA	NA	NA	NA
AYS77022.1\|1043821_1045048_+	hypothetical protein	A0A0U2RJZ0	Escherichia_phage	1.8e-147	63.6
AYS77023.1\|1045031_1045658_+	hypothetical protein	A0A0U2RK03	Escherichia_phage	6.6e-93	72.1
AYS77024.1\|1045654_1047364_+\|tail	tail protein	A0A0U2SAV1	Escherichia_phage	2.6e-91	66.0
AYS77025.1\|1047360_1048185_+\|tail	tail protein	A0A0M4QWS3	Salmonella_phage	4.4e-153	96.7
AYS77026.1\|1048174_1048750_+\|tail	phage tail protein	A0A0M4RTP2	Salmonella_phage	1.7e-90	86.3
AYS77027.1\|1048790_1049933_-	LPS 1,2-N-acetylglucosaminetransferase	NA	NA	NA	NA
AYS77028.1\|1049980_1050136_-	hypothetical protein	NA	NA	NA	NA
AYS77029.1\|1050185_1050455_-	hypothetical protein	NA	NA	NA	NA
AYS77030.1\|1051375_1052605_+\|integrase	integrase	H6WRW7	Salmonella_phage	3.2e-232	93.9
AYS77031.1\|1052582_1052867_-	hypothetical protein	H6WRW8	Salmonella_phage	2.7e-41	84.0
AYS77032.1\|1052907_1053153_-	bacteriophage protein	S4TR31	Salmonella_phage	1.3e-36	96.2
AYS77033.1\|1053152_1054049_-	DNA methylase	A0A0M4R347	Salmonella_phage	3.0e-155	94.7
AYS77034.1\|1054045_1054669_-	exonuclease	A0A0S2SY31	Pseudomonas_phage	2.2e-56	57.4
AYS77035.1\|1054665_1055409_-	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	9.7e-67	69.4
AYS77036.1\|1055414_1055711_-	host-nuclease inhibitor protein	A0A0M5M5Z9	Salmonella_phage	2.3e-43	91.8
AYS77037.1\|1055792_1055999_-	phage encoded cell division inhibitor protein	A0A0M4S6W3	Salmonella_phage	1.9e-33	100.0
AYS77038.1\|1055991_1056528_-	HNH endonuclease	A0A0M3ULK5	Salmonella_phage	1.2e-95	99.4
AYS77039.1\|1057059_1058058_-	hypothetical protein	A0A0R6PIZ6	Moraxella_phage	1.5e-43	32.1
AYS77040.1\|1058205_1058673_-	transcriptional regulator	K7PHG0	Enterobacteria_phage	2.1e-67	85.2
AYS77041.1\|1058686_1058914_+	Rha family transcriptional regulator	K7PKS2	Enterobacteria_phage	1.5e-34	95.9
AYS77042.1\|1058933_1059254_+	repressor	A0A0M4RU01	Salmonella_phage	1.3e-52	100.0
AYS77043.1\|1059548_1059764_-	hypothetical protein	NA	NA	NA	NA
AYS77044.1\|1059773_1060589_+	hypothetical protein	A0A0U2RT81	Escherichia_phage	8.8e-37	83.1
AYS77045.1\|1060591_1061341_+	DNA replication protein	S4TNF5	Salmonella_phage	4.3e-139	100.0
AYS77046.1\|1061351_1061699_+	DNA-binding protein	H6WRX9	Salmonella_phage	4.8e-53	90.4
AYS77047.1\|1061695_1062220_+	bacteriophage protein	A0A220NQV2	Salmonella_phage	1.8e-91	99.4
AYS77048.1\|1062219_1062693_+	methyltransferase	H9C170	Pectobacterium_phage	1.6e-67	80.1
AYS77049.1\|1062696_1063269_+	bacteriophage protein	S4TSR6	Salmonella_phage	1.3e-66	68.0
AYS77050.1\|1063362_1063629_+	bacteriophage protein	S4TNF2	Salmonella_phage	1.5e-46	100.0
AYS77051.1\|1063710_1063872_+	bacteriophage protein	NA	NA	NA	NA
AYS77052.1\|1064304_1064802_+	bacteriophage protein	NA	NA	NA	NA
AYS77053.1\|1064986_1065226_+	damage-inducible protein	H6WRY5	Salmonella_phage	3.9e-38	100.0
1065182:1065217	attR	NA	NA	NA	NA
AYS77054.1\|1065215_1065521_+	bacteriophage protein	H6WRY6	Salmonella_phage	9.8e-42	100.0
AYS77055.1\|1065560_1066163_+	bacteriophage protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
AYS77056.1\|1066371_1066983_+	bacteriophage lambda protein NinG	A0A0M4RU10	Salmonella_phage	2.5e-92	99.5
AYS77057.1\|1067115_1067913_+	prophage antitermination protein	A0A0M4S661	Salmonella_phage	3.4e-150	99.2
AYS77058.1\|1068311_1068437_+	bacteriophage protein	NA	NA	NA	NA
AYS77059.1\|1068572_1069022_-	lipoprotein	NA	NA	NA	NA
AYS77060.1\|1069238_1069628_+	prophage membrane protein	K7PHB9	Enterobacterial_phage	3.1e-40	70.2
AYS77061.1\|1069614_1069896_+	prophage membrane protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
AYS77062.1\|1069895_1070510_+	bacteriophage protein	Q8HA86	Salmonella_phage	3.2e-108	93.1
AYS77063.1\|1070729_1070984_+	hypothetical protein	NA	NA	NA	NA
AYS77064.1\|1071088_1071466_+	hypothetical protein	Q6UAR9	Klebsiella_phage	4.9e-43	68.5
AYS77065.1\|1071529_1071790_+	hypothetical protein	NA	NA	NA	NA
AYS77066.1\|1071879_1072632_+\|terminase	prophage terminase small subunit	A0A0M3ULJ9	Salmonella_phage	3.4e-11	56.5
AYS77067.1\|1072597_1074001_+	bacteriophage protein	A0A077KAW0	Edwardsiella_phage	6.5e-189	70.1
AYS77068.1\|1074000_1075470_+	hypothetical protein	A0A0M4S6U1	Salmonella_phage	1.7e-280	99.2
AYS77069.1\|1075561_1076092_+	hypothetical protein	A0A0M4REK0	Salmonella_phage	8.7e-86	87.4
AYS77070.1\|1076106_1077339_+	hypothetical protein	A0A0M4R5A6	Salmonella_phage	1.4e-227	99.0
AYS77071.1\|1077343_1077841_+	bacteriophage protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
AYS77072.1\|1077852_1078794_+	bacteriophage protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	100.0
AYS77073.1\|1078835_1079204_+	bacteriophage protein	A0A0M4RTX5	Salmonella_phage	8.7e-61	100.0
AYS77074.1\|1079169_1079577_+	bacteriophage protein	A0A0M5M3S2	Salmonella_phage	7.1e-72	97.8
AYS77075.1\|1079573_1080128_+	bacteriophage protein	A0A0M4S631	Salmonella_phage	4.8e-95	100.0
AYS77076.1\|1080114_1080504_+	bacteriophage protein	A0A0M3ULK0	Salmonella_phage	6.0e-68	98.4
AYS77077.1\|1080478_1081042_+	bacteriophage protein	A0A0M4R331	Salmonella_phage	8.9e-81	75.3
AYS77078.1\|1081045_1082191_+	bacteriophage protein	A0A2H4J8G4	uncultured_Caudovirales_phage	2.2e-163	74.5
AYS77079.1\|1082202_1082643_+	bacteriophage protein	A0A2H4J619	uncultured_Caudovirales_phage	3.5e-56	74.7
AYS77080.1\|1082646_1083099_+	bacteriophage protein	A0A0M4S6U8	Salmonella_phage	1.9e-57	76.6
AYS77081.1\|1083276_1085229_+	bacteriophage protein	A0A0M4REK7	Salmonella_phage	1.8e-181	56.0
AYS77082.1\|1085228_1085879_+	bacteriophage protein	A0A0M3ULD5	Salmonella_phage	3.0e-56	60.6
AYS77083.1\|1085882_1086185_+	bacteriophage protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	57.0
AYS77084.1\|1086187_1087219_+	bacteriophage protein	A0A2H4J1B2	uncultured_Caudovirales_phage	1.2e-96	51.4
AYS77085.1\|1087215_1087551_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.1e-20	52.2
AYS77086.1\|1087745_1088477_+	bacteriophage protein	NA	NA	NA	NA
AYS77087.1\|1088476_1088905_+	bacteriophage protein	NA	NA	NA	NA
AYS77088.1\|1088963_1089719_+	bacteriophage protein	A0A0M5M1K7	Salmonella_phage	4.1e-105	85.3
AYS77089.1\|1089806_1089944_+	bacteriophage protein	A0A0M4S639	Salmonella_phage	2.0e-18	100.0
AYS77090.1\|1089959_1090313_+	bacteriophage protein	A0A0M4R339	Salmonella_phage	3.2e-60	98.3
AYS77091.1\|1090313_1091513_+	bacteriophage protein	A0A0M4RD32	Salmonella_phage	8.5e-214	97.5
AYS77092.1\|1091509_1092190_+	bacteriophage protein	A0A0M5M1K4	Salmonella_phage	6.9e-128	98.7
AYS77093.1\|1092189_1093701_+\|tail	bacteriophage tail protein	S4TP62	Salmonella_phage	1.5e-111	59.4
AYS77094.1\|1093715_1094234_+\|tail	tail fiber protein	A0A1B0VCD0	Salmonella_phage	1.7e-46	62.8
AYS77095.1\|1095155_1095857_-	hypothetical protein	NA	NA	NA	NA
AYS77096.1\|1096169_1096448_-	hypothetical protein	S4TNM0	Salmonella_phage	2.4e-26	92.3
AYS77097.1\|1096873_1099486_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.1e-19	22.6
AYS77098.1\|1099693_1100704_+	dihydroorotate dehydrogenase	NA	NA	NA	NA
AYS77099.1\|1100866_1101412_+	hypothetical protein	NA	NA	NA	NA
AYS77100.1\|1101408_1102518_-	MOSC domain-containing protein	NA	NA	NA	NA
AYS77101.1\|1102616_1104725_+	23S rRNA m(2)G2445 methyltransferase	W6LLI2	Streptococcus_phage	5.1e-20	29.6
AYS77102.1\|1104737_1106645_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
AYS77103.1\|1106659_1107913_+	inner membrane protein	NA	NA	NA	NA
AYS77104.1\|1107917_1109558_+	paraquat-inducible protein B	NA	NA	NA	NA
AYS77105.1\|1109554_1110118_+	lipoprotein	NA	NA	NA	NA
AYS77106.1\|1110371_1110539_+	ribosome modulation factor	NA	NA	NA	NA
AYS77107.1\|1110638_1111157_-	D-3-hydroxydecanoyl-(acyl carrier-protein) dehydratase	NA	NA	NA	NA
AYS77108.1\|1111225_1112986_-\|protease	ATP-dependent protease	NA	NA	NA	NA
AYS77109.1\|1113171_1113624_+	Ter macrodomain organizer matS-binding protein	NA	NA	NA	NA
AYS77110.1\|1113695_1114748_-	outer membrane protein A	NA	NA	NA	NA
AYS77111.1\|1115102_1115612_-	cell division inhibitor	NA	NA	NA	NA
AYS77112.1\|1115828_1116434_+	competence-specific transcriptional regulator TfoX	NA	NA	NA	NA
AYS77113.1\|1116420_1118574_-	inner membrane protein	NA	NA	NA	NA
AYS77114.1\|1118592_1119039_-	hypothetical protein	NA	NA	NA	NA
AYS77115.1\|1119162_1121217_+	helicase IV	A7KV33	Bacillus_phage	6.5e-20	27.6
AYS77116.1\|1121252_1121711_-	methylglyoxal synthase	NA	NA	NA	NA
AYS77117.1\|1121805_1122468_-	hypothetical protein	NA	NA	NA	NA
AYS77118.1\|1122638_1123055_+	hypothetical protein	NA	NA	NA	NA
AYS77119.1\|1123099_1123417_-	heat shock protein HspQ	NA	NA	NA	NA
AYS77120.1\|1123474_1124686_-	23S rRNA m(5)C1962 methyltransferase	NA	NA	NA	NA
AYS77121.1\|1125817_1126276_+\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYS77122.1\|1127012_1127294_+	acylphosphatase	NA	NA	NA	NA
AYS77123.1\|1127290_1127620_-	sulfite reductase	NA	NA	NA	NA
AYS77124.1\|1127706_1128366_-	hypothetical protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
AYS77125.1\|1129029_1129488_+\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1573769 : 1647339

Burkholderia_virus(42.11%)

plate,head,tRNA,protease,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS77530.1\|1573769_1574228_-\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYS77531.1\|1574730_1575012_+	stress response protein	NA	NA	NA	NA
AYS77532.1\|1575280_1576102_+\|protease	serine protease	NA	NA	NA	NA
AYS77533.1\|1576136_1576466_-	multidrug efflux system protein MdtI	NA	NA	NA	NA
AYS77534.1\|1576452_1576815_-	multidrug efflux system protein MdtJ	NA	NA	NA	NA
AYS77535.1\|1576926_1577097_-	hypothetical protein	NA	NA	NA	NA
AYS77536.1\|1577231_1578266_+	hypothetical protein	NA	NA	NA	NA
AYS77537.1\|1578440_1579829_-	pyridine nucleotide transhydrogenase subunit beta	NA	NA	NA	NA
AYS77538.1\|1579839_1581369_-	pyridine nucleotide transhydrogenase subunit alpha	NA	NA	NA	NA
AYS77539.1\|1581895_1582840_+	hypothetical protein	NA	NA	NA	NA
AYS77540.1\|1583021_1583411_-	bacteriophage transcriptional regulator	Q6QIE8	Burkholderia_phage	4.5e-31	54.2
AYS77541.1\|1583382_1583835_-	hypothetical protein	A4JWM5	Burkholderia_virus	1.2e-24	46.6
AYS77542.1\|1584029_1584260_-	hypothetical protein	NA	NA	NA	NA
AYS77543.1\|1584256_1584940_-	hypothetical protein	A0A2P9JZH4	Alteromonadaceae_phage	2.6e-34	37.3
AYS77544.1\|1584936_1585152_-	hypothetical protein	NA	NA	NA	NA
AYS77545.1\|1585144_1585528_-	hypothetical protein	K7PJQ4	Enterobacteria_phage	2.3e-27	58.9
AYS77546.1\|1585524_1585827_-	hypothetical protein	NA	NA	NA	NA
AYS77547.1\|1585836_1586109_-	hypothetical protein	NA	NA	NA	NA
AYS77548.1\|1586397_1586928_-	bacteriophage host-nuclease inhibitor protein	L7P7T1	Pseudomonas_phage	3.4e-58	66.1
AYS77549.1\|1586955_1587225_-	hypothetical protein	NA	NA	NA	NA
AYS77550.1\|1587227_1588394_-	ExeA protein	A4JWN1	Burkholderia_virus	3.3e-122	59.7
AYS77551.1\|1588404_1590174_-	hypothetical protein	Q6QIE0	Burkholderia_phage	2.8e-229	68.5
AYS77552.1\|1590351_1590783_-	hypothetical protein	A4JWN3	Burkholderia_virus	4.5e-32	57.3
AYS77553.1\|1590778_1591375_+	hypothetical protein	NA	NA	NA	NA
AYS77554.1\|1591618_1591969_+	hypothetical protein	A4JWP3	Burkholderia_virus	4.5e-22	53.0
AYS77555.1\|1592683_1593334_+	lipoprotein	Q5ZQY9	Pseudomonas_phage	8.1e-09	32.9
AYS77556.1\|1593330_1593657_+	hypothetical protein	Q6QIC4	Burkholderia_phage	9.6e-19	49.5
AYS77557.1\|1593656_1593968_+	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
AYS77558.1\|1593967_1594513_+	hypothetical protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
AYS77559.1\|1594509_1596105_+	hypothetical protein	A4JWJ4	Burkholderia_virus	9.3e-184	62.6
AYS77560.1\|1596104_1597601_+	hypothetical protein	A4JWJ5	Burkholderia_virus	8.0e-169	59.6
AYS77561.1\|1597581_1598403_+\|head	phage head morphogenesis protein	A4JWJ6	Burkholderia_virus	5.3e-98	61.2
AYS77562.1\|1598405_1598864_+	bacteriophage protein	Q6QIB8	Burkholderia_phage	1.5e-30	44.8
AYS77563.1\|1599078_1600194_+	hypothetical protein	A4JWJ9	Burkholderia_virus	7.9e-97	51.1
AYS77564.1\|1600208_1601162_+	hypothetical protein	A4JWK0	Burkholderia_virus	5.2e-65	44.5
AYS77565.1\|1601171_1601510_+	hypothetical protein	NA	NA	NA	NA
AYS77566.1\|1601511_1601958_+	hypothetical protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
AYS77567.1\|1601957_1602422_+	hypothetical protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
AYS77568.1\|1602418_1602673_+	hypothetical protein	NA	NA	NA	NA
AYS77569.1\|1602662_1604090_+\|tail	bacteriophage tail sheath protein	A4JWK5	Burkholderia_virus	3.7e-216	77.4
AYS77570.1\|1604089_1604611_+\|tail	tail core protein	A4JWK6	Burkholderia_virus	8.0e-68	68.2
AYS77571.1\|1604613_1604895_+	hypothetical protein	NA	NA	NA	NA
AYS77572.1\|1604992_1605328_+	hypothetical protein	NA	NA	NA	NA
AYS77573.1\|1605503_1607969_+	bacteriophage protein	A4JWL0	Burkholderia_virus	2.2e-168	42.6
AYS77574.1\|1607968_1608853_+	hypothetical protein	A4JWL1	Burkholderia_virus	7.5e-50	47.0
AYS77575.1\|1608849_1609065_+\|tail	bacteriophage tail fiber protein	Q6QIA3	Burkholderia_phage	2.4e-18	60.0
AYS77576.1\|1609052_1610207_+	bacteriophage regulatory protein	Q6QIA2	Burkholderia_phage	4.7e-84	47.1
AYS77577.1\|1610203_1610731_+\|plate	bacteriophage baseplate protein	Q6QIA1	Burkholderia_phage	1.5e-21	46.5
AYS77578.1\|1610787_1611135_+\|plate	bacteriophage baseplate protein	Q6QIA0	Burkholderia_phage	8.6e-34	60.6
AYS77579.1\|1611125_1612229_+\|plate	bacteriophage baseplate assembly protein	Q6QI99	Burkholderia_phage	5.4e-106	54.3
AYS77580.1\|1612221_1612800_+\|tail	bacteriophage tail fiber protein	A4JWL7	Burkholderia_virus	6.4e-66	65.8
AYS77581.1\|1612802_1613828_+\|tail	bacteriophage tail fiber protein	M1TAS6	Escherichia_phage	1.6e-64	53.3
AYS77582.1\|1614341_1614959_+\|tail	bacteriophage tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	5.8e-65	59.9
AYS77583.1\|1615452_1615845_-	hypothetical protein	Q9MCR6	Enterobacteria_phage	1.2e-18	51.9
AYS77584.1\|1616441_1617014_+	DNA-invertase	A0A0A7NPV4	Enterobacteria_phage	8.8e-84	84.7
AYS77585.1\|1617294_1618677_+	amino acid permease	NA	NA	NA	NA
AYS77586.1\|1618738_1619074_-	hypothetical protein	NA	NA	NA	NA
AYS77587.1\|1619200_1619932_+	two-component response regulator	NA	NA	NA	NA
AYS77588.1\|1620412_1621564_+	outer membrane protein	Q1MVN1	Enterobacteria_phage	3.2e-117	59.1
AYS77589.1\|1621716_1623423_+	metal-dependent hydrolase	NA	NA	NA	NA
AYS77590.1\|1623530_1624835_+	two component sensor kinase	W8CYF6	Bacillus_phage	5.7e-14	22.7
AYS77591.1\|1624910_1625840_+	DNA sequence-specific contrahelicase	NA	NA	NA	NA
AYS77592.1\|1625836_1627240_-	fumarate hydratase class II	NA	NA	NA	NA
AYS77593.1\|1627407_1629054_-	Fumarate hydratase class I	NA	NA	NA	NA
AYS77594.1\|1629253_1630429_+	mannose-6-phosphate isomerase	NA	NA	NA	NA
AYS77595.1\|1630531_1632040_+	hypothetical protein	NA	NA	NA	NA
AYS77596.1\|1632745_1633747_+	adenosine deaminase	NA	NA	NA	NA
AYS77597.1\|1633820_1634936_-	oxidoreductase	NA	NA	NA	NA
AYS77598.1\|1635038_1635194_+	hypothetical protein	NA	NA	NA	NA
AYS77599.1\|1635492_1635708_+	oriC-binding nucleoid-associated protein	NA	NA	NA	NA
AYS77600.1\|1635796_1636237_+	hypothetical protein	NA	NA	NA	NA
AYS77601.1\|1636313_1636895_+	Na(+)-translocating NADH-quinone reductase subunit E	NA	NA	NA	NA
AYS77602.1\|1636894_1637473_+	ferredoxin-like protein	NA	NA	NA	NA
AYS77603.1\|1637465_1639487_+	NADH reducing dehydrogenase	NA	NA	NA	NA
AYS77604.1\|1639487_1640546_+	electron transport complex protein RnfD	NA	NA	NA	NA
AYS77605.1\|1640549_1641170_+	electron transport complex protein RnfG	NA	NA	NA	NA
AYS77606.1\|1641172_1641865_+	electron transport complex protein RsxE	NA	NA	NA	NA
AYS77607.1\|1641864_1642500_+	endonuclease III	NA	NA	NA	NA
AYS77608.1\|1643100_1644606_+	proton/oligopeptide symporter	NA	NA	NA	NA
AYS77609.1\|1644710_1645316_+	glutathione S-transferase	NA	NA	NA	NA
AYS77610.1\|1646064_1647339_-\|tRNA	tyrosyl-tRNA synthetase	K4F5T3	Cronobacter_phage	1.6e-85	42.1

DBSCAN-SWA_4

1828377 : 1832789

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS77792.1\|1828377_1828617_+	virulence protein	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
AYS77793.1\|1829489_1830299_+	toxin-like protein	A5LH53	Enterobacteria_phage	2.1e-62	50.0
AYS77794.1\|1830371_1830749_+	hypothetical protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
AYS77795.1\|1830896_1831439_-	hypothetical protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
AYS77796.1\|1831630_1832359_-	pertussis toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	4.9e-63	53.3
AYS77797.1\|1832375_1832789_-	pertussis-like toxin subunit	A0A0U2KD34	Escherichia_phage	1.4e-19	38.6

DBSCAN-SWA_5

2036662 : 2043896

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS77987.1\|2036662_2038093_-	DNA-cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
AYS77988.1\|2038166_2038862_-	hypothetical protein	S4W232	Pandoravirus	2.1e-07	27.5
AYS77989.1\|2038941_2039253_-	hypothetical protein	NA	NA	NA	NA
AYS77990.1\|2039903_2041088_+	outer membrane protein S1	Q1MVN1	Enterobacteria_phage	1.4e-107	56.4
AYS77991.1\|2041547_2041760_-	cold shock protein	A0A1W6JNX5	Morganella_phage	1.5e-20	70.0
AYS77992.1\|2042205_2043474_-	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	3.3e-224	91.2
AYS77993.1\|2043476_2043896_-	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

DBSCAN-SWA_6

2127638 : 2138145

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS78070.1\|2127638_2128952_-	dehydratase RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
AYS78071.1\|2128978_2130058_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.1
AYS78072.1\|2130062_2130836_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AYS78073.1\|2130851_2131826_-	reductase RfbI	NA	NA	NA	NA
AYS78074.1\|2131831_2132383_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.7e-53	58.6
AYS78075.1\|2132383_2133262_-	TDP-glucose pyrophosphorylase	I7I009	Enterobacteria_phage	2.3e-107	64.8
AYS78076.1\|2133309_2134209_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.9e-31	36.3
AYS78077.1\|2134208_2135294_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
AYS78078.1\|2135670_2136564_-	UTP-glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AYS78079.1\|2136741_2138145_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.1e-21	26.5

DBSCAN-SWA_7

2214037 : 2223208

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS78137.1\|2214037_2216071_+\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	6.1e-55	26.9
AYS78138.1\|2216311_2216770_+	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AYS78139.1\|2216941_2217472_+	lipoprotein	NA	NA	NA	NA
AYS78140.1\|2217528_2217996_-	hypothetical protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AYS78141.1\|2218042_2218762_-	two-component system response regulator	NA	NA	NA	NA
AYS78142.1\|2218758_2220444_-	two-component system sensor kinase	Q9EYF3	Enterobacteria_phage	1.1e-278	91.1
AYS78143.1\|2220666_2221398_+	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AYS78144.1\|2221457_2221565_+	hypothetical protein	NA	NA	NA	NA
AYS78145.1\|2221545_2222277_-	ABC transporter permease	NA	NA	NA	NA
AYS78146.1\|2222260_2223208_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2

DBSCAN-SWA_8

2758748 : 2772140

Salmonella_phage(70.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS78575.1\|2758748_2758967_-	hypothetical protein	Q53ZE7	Salmonella_virus	1.9e-18	71.9
AYS78576.1\|2759057_2760158_-	hypothetical protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
AYS78577.1\|2760154_2760640_-\|tail	bacteriophage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
AYS78578.1\|2760636_2763714_-\|tail	bacteriophage tail protein	E5G6Q1	Salmonella_phage	0.0e+00	63.1
AYS78579.1\|2763706_2763826_-	hypothetical protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
AYS78580.1\|2763840_2764143_-\|tail	phage tail protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
AYS78581.1\|2764197_2764713_-\|tail	major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
AYS78582.1\|2764722_2765895_-\|tail	major tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
AYS78583.1\|2766037_2766610_-	DNA-invertase	A0A0F7LA37	Escherichia_phage	1.4e-86	86.3
AYS78584.1\|2767287_2768403_+	glycosyltransferase	NA	NA	NA	NA
AYS78585.1\|2768483_2772140_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	1.0e-44	28.6

DBSCAN-SWA_9

3089412 : 3133115

Bacillus_virus(33.33%)

transposase,bacteriocin,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS78873.1\|3089412_3089871_-\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYS78874.1\|3090060_3091140_-	fructose 1,6-bisphosphate aldolase	NA	NA	NA	NA
AYS78875.1\|3091241_3092405_-	phosphoglycerate kinase	NA	NA	NA	NA
AYS78876.1\|3092426_3093473_-	D-erythrose 4-phosphate dehydrogenase	NA	NA	NA	NA
AYS78877.1\|3093846_3094272_+	hypothetical protein	NA	NA	NA	NA
AYS78878.1\|3094297_3094876_+	hypothetical protein	NA	NA	NA	NA
AYS78879.1\|3094909_3095584_+	hypothetical protein	NA	NA	NA	NA
AYS78880.1\|3095565_3096249_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
AYS78881.1\|3096242_3096899_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.6e-09	28.6
AYS78882.1\|3097003_3097462_-\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYS78883.1\|3097650_3099642_-	transketolase	NA	NA	NA	NA
AYS78884.1\|3099917_3100676_+\|protease	metalloprotease	NA	NA	NA	NA
AYS78885.1\|3100776_3101697_-	agmatine ureohydrolase	NA	NA	NA	NA
AYS78886.1\|3101924_3103901_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
AYS78887.1\|3103909_3104041_-	hypothetical protein	NA	NA	NA	NA
AYS78888.1\|3104335_3104635_-	membrane protein	NA	NA	NA	NA
AYS78889.1\|3104690_3105845_+	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	1.5e-130	63.9
AYS78890.1\|3106337_3107732_+	galactose-proton symport	NA	NA	NA	NA
AYS78891.1\|3107810_3108308_+	hypothetical protein	NA	NA	NA	NA
AYS78892.1\|3108403_3109111_+	endonuclease I	NA	NA	NA	NA
AYS78893.1\|3109187_3109919_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
AYS78894.1\|3109938_3110886_+	glutathione synthetase	NA	NA	NA	NA
AYS78895.1\|3111101_3111665_+	hypothetical protein	NA	NA	NA	NA
AYS78896.1\|3111664_3112081_+	Holliday junction resolvase	NA	NA	NA	NA
AYS78897.1\|3112127_3112814_-	global regulatory protein	NA	NA	NA	NA
AYS78898.1\|3112943_3113924_-	type II secretion system ATP-binding protein	NA	NA	NA	NA
AYS78899.1\|3113941_3114646_+	hypothetical protein	NA	NA	NA	NA
AYS78900.1\|3114664_3115231_+	hypothetical protein	NA	NA	NA	NA
AYS78901.1\|3115227_3115518_+	hypothetical protein	NA	NA	NA	NA
AYS78902.1\|3115525_3116119_+	dITP/XTP pyrophosphatase	NA	NA	NA	NA
AYS78903.1\|3116111_3117248_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
AYS78904.1\|3117338_3118346_-	hypothetical protein	NA	NA	NA	NA
AYS78905.1\|3118478_3119525_-	L-asparaginase	NA	NA	NA	NA
AYS78906.1\|3119843_3120302_+\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYS78907.1\|3120424_3121144_-	hypothetical protein	NA	NA	NA	NA
AYS78908.1\|3121193_3121520_-	hypothetical protein	NA	NA	NA	NA
AYS78909.1\|3121519_3122239_-\|tRNA	tRNA m(7)G46 methyltransferase	NA	NA	NA	NA
AYS78910.1\|3122393_3123446_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
AYS78911.1\|3123473_3123749_+	oxidative damage protection protein	NA	NA	NA	NA
AYS78912.1\|3123861_3124947_+	membrane-bound lytic murein transglycosylase C	A0A0H3V0Q1	Geobacillus_virus	5.8e-12	39.0
AYS78913.1\|3125163_3126420_+	nucleoside permease	NA	NA	NA	NA
AYS78914.1\|3129030_3129738_+	hypothetical protein	NA	NA	NA	NA
AYS78915.1\|3132327_3132594_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AYS78916.1\|3132836_3133115_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

DBSCAN-SWA_10

3510302 : 3548360

Salmonella_phage(82.05%)

plate,terminase,integrase,tail,transposase,capsid,portal

attL 3505266:3505280|attR 3517432:3517446

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3505266:3505280	attL	NA	NA	NA	NA
AYS79245.1\|3510302_3511949_-	acetolactate synthase large subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	9.0e-65	31.5
AYS79246.1\|3512088_3512187_-	ilvGMEDA operon attenuator peptide	NA	NA	NA	NA
AYS79247.1\|3512442_3512772_+	hypothetical protein	NA	NA	NA	NA
AYS79248.1\|3512812_3513865_-\|integrase	bacteriophage integrase	A0A218M4I3	Erwinia_phage	3.6e-107	57.3
AYS79249.1\|3514260_3514830_-	repressor protein	A0A1S6KZZ7	Salmonella_phage	2.5e-38	43.4
AYS79250.1\|3514955_3515177_+	hypothetical protein	NA	NA	NA	NA
AYS79251.1\|3515209_3515719_+	regulatory protein cII	E5G6L3	Salmonella_phage	5.8e-87	98.8
AYS79252.1\|3515893_3516118_+	hypothetical protein	NA	NA	NA	NA
AYS79253.1\|3516140_3516482_+	hypothetical protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
AYS79254.1\|3516549_3516783_+	hypothetical protein	E5G6L6	Salmonella_phage	2.0e-31	94.8
AYS79255.1\|3516782_3517010_+	hypothetical protein	E5G6L7	Salmonella_phage	2.7e-36	100.0
AYS79256.1\|3517006_3517864_+	DNA adenine methylase	E5G6L8	Salmonella_phage	3.5e-161	97.2
3517432:3517446	attR	NA	NA	NA	NA
AYS79257.1\|3517860_3520275_+	endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
AYS79258.1\|3520428_3520617_+	hypothetical protein	E5G6M0	Salmonella_phage	7.9e-26	95.2
AYS79259.1\|3522584_3523499_+	hypothetical protein	NA	NA	NA	NA
AYS79260.1\|3523495_3524236_+	hypothetical protein	NA	NA	NA	NA
AYS79261.1\|3524270_3525308_-\|capsid,portal	capsid portal protein	A0A1S6KZW5	Salmonella_phage	1.3e-173	89.5
AYS79262.1\|3525307_3527074_-\|terminase	terminase subunit	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
AYS79263.1\|3527216_3528050_+\|capsid	capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.5e-121	90.6
AYS79264.1\|3528066_3529125_+\|capsid	major capsid protein	E5G6M6	Salmonella_phage	1.4e-180	93.1
AYS79265.1\|3529128_3529779_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
AYS79266.1\|3529811_3530339_+\|capsid	capsid completion protein	A0A1S6KZW8	Salmonella_phage	2.1e-76	89.0
AYS79267.1\|3530338_3530542_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.4e-31	92.5
AYS79268.1\|3530545_3530761_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
AYS79269.1\|3530780_3531254_+	lysozyme	E5G6N1	Salmonella_phage	3.7e-80	91.0
AYS79270.1\|3531255_3531633_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.3e-16	40.0
AYS79271.1\|3531629_3532058_+	regulatory protein	E5G6N2	Salmonella_phage	2.2e-47	77.3
AYS79272.1\|3532153_3532585_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.5e-72	95.1
AYS79273.1\|3532577_3533024_+\|tail	phage tail completion protein	A0A1S6L001	Salmonella_phage	6.6e-63	85.6
AYS79274.1\|3533092_3533671_+\|plate	phage baseplate assembly protein	A0A1S6KZX7	Salmonella_phage	5.5e-94	86.5
AYS79275.1\|3533667_3534027_+\|plate	phage baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	6.1e-51	84.9
AYS79276.1\|3534013_3534922_+\|plate	phage baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	1.3e-142	89.7
AYS79277.1\|3534914_3535520_+\|tail	phage tail protein	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
AYS79278.1\|3535516_3537031_+\|tail	variable tail fiber protein	M1TAS6	Escherichia_phage	6.8e-200	73.2
AYS79279.1\|3537030_3537624_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	9.2e-60	64.3
AYS79280.1\|3537595_3538036_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	3.1e-52	68.0
AYS79281.1\|3538458_3539031_+	DNA-invertase	A0A0F7LA37	Escherichia_phage	1.4e-86	86.3
AYS79282.1\|3539173_3540346_+\|tail	bacteriophage major tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
AYS79283.1\|3540355_3540871_+\|tail	major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
AYS79284.1\|3540925_3541228_+\|tail	phage tail protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
AYS79285.1\|3541242_3541362_+	bacteriophage protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
AYS79286.1\|3541354_3544432_+\|tail	bacteriophage tail protein	E5G6Q1	Salmonella_phage	0.0e+00	63.1
AYS79287.1\|3544428_3544914_+\|tail	bacteriophage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
AYS79288.1\|3544910_3546011_+	hypothetical protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
AYS79289.1\|3546101_3546320_+	hypothetical protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
AYS79290.1\|3547901_3548360_+\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA

DBSCAN-SWA_11

4463705 : 4537975

Salmonella_phage(82.61%)

plate,terminase,integrase,tail,capsid,portal

attL 4525219:4525235|attR 4538134:4538150

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS80061.1\|4463705_4465655_+	hypothetical protein	A0A2K9V411	Faecalibacterium_phage	5.9e-31	38.3
AYS80062.1\|4465726_4466635_+	hypothetical protein	NA	NA	NA	NA
AYS80063.1\|4466708_4467608_+	hypothetical protein	NA	NA	NA	NA
AYS80064.1\|4467649_4468009_+	hypothetical protein	NA	NA	NA	NA
AYS80065.1\|4468108_4468378_-	hypothetical protein	NA	NA	NA	NA
AYS80066.1\|4468509_4469784_-	UV protection protein	F1C5A5	Cronobacter_phage	7.5e-152	62.0
AYS80067.1\|4470003_4470381_+	hypothetical protein	NA	NA	NA	NA
AYS80068.1\|4470467_4470686_-	hypothetical protein	E5G6Q4	Salmonella_phage	4.9e-27	75.0
AYS80069.1\|4470753_4471854_-	hypothetical protein	E5G6Q3	Salmonella_phage	7.9e-190	92.1
AYS80070.1\|4471850_4472336_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	9.4e-71	93.2
AYS80071.1\|4472335_4475116_-	hypothetical protein	A0A2H4JGB2	uncultured_Caudovirales_phage	3.5e-125	41.1
AYS80072.1\|4475108_4475228_-	bacteriophage protein	E5G6Q0	Salmonella_phage	1.2e-14	94.9
AYS80073.1\|4475242_4475545_-\|tail	phage tail protein	E5G6P9	Salmonella_phage	3.3e-42	93.9
AYS80074.1\|4475599_4476115_-\|tail	major tail tube protein	E5G6P8	Salmonella_phage	2.7e-92	99.4
AYS80075.1\|4476124_4477297_-\|tail	major tail sheath protein	A0A1S6KZY7	Salmonella_phage	9.8e-223	99.5
AYS80076.1\|4477831_4478554_+	invasion-associated secreted protein	NA	NA	NA	NA
AYS80077.1\|4478751_4479159_-\|tail	phage tail fiber protein	A0A1B0V844	Salmonella_phage	4.1e-59	84.2
AYS80078.1\|4479165_4480785_-\|tail	phage tail fiber protein	E5G6P0	Salmonella_phage	2.7e-154	90.9
AYS80079.1\|4480781_4481387_-\|tail	phage tail protein	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
AYS80080.1\|4481379_4482288_-\|plate	phage baseplate assembly protein	E5G6N8	Salmonella_phage	5.2e-155	97.0
AYS80081.1\|4482274_4482634_-\|plate	phage baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	6.8e-58	96.6
AYS80082.1\|4482630_4483209_-\|plate	phage baseplate assembly protein	E5G6N6	Salmonella_phage	3.9e-108	99.5
AYS80083.1\|4483277_4483724_-\|tail	phage tail completion protein	A0A1S6L001	Salmonella_phage	2.2e-66	90.4
AYS80084.1\|4483716_4484148_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.1e-75	99.3
AYS80085.1\|4484243_4484669_-	regulatory protein	A0A1S6KZX8	Salmonella_phage	2.5e-67	97.9
AYS80086.1\|4484668_4485046_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.5e-60	99.2
AYS80087.1\|4485050_4485521_-	lysozyme	A0A1S6KZY9	Salmonella_phage	1.0e-85	97.4
AYS80088.1\|4485540_4485756_-	hypothetical protein	E5G6N0	Salmonella_phage	3.8e-32	98.6
AYS80089.1\|4485759_4485963_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	3.8e-34	100.0
AYS80090.1\|4485962_4486427_-\|capsid	capsid completion protein	A0A1S6KZW8	Salmonella_phage	2.4e-84	98.1
AYS80091.1\|4486520_4487171_-\|terminase	phage terminase	E5G6M7	Salmonella_phage	2.4e-114	99.5
AYS80092.1\|4487174_4488239_-\|capsid	major capsid protein	A0A1S6KZZ3	Salmonella_phage	1.3e-194	98.3
AYS80093.1\|4488255_4489089_-\|capsid	capsid scaffolding protein	E5G6M5	Salmonella_phage	6.1e-126	87.4
AYS80094.1\|4489231_4490998_+\|terminase	terminase subunit	A0A1S6KZW3	Salmonella_phage	0.0e+00	96.4
AYS80095.1\|4490994_4492041_+\|capsid,portal	capsid portal protein	A0A1S6KZW5	Salmonella_phage	2.1e-176	86.6
AYS80096.1\|4492089_4492785_-	hypothetical protein	NA	NA	NA	NA
AYS80097.1\|4492804_4493869_-	hypothetical protein	NA	NA	NA	NA
AYS80098.1\|4493865_4494930_-	hypothetical protein	NA	NA	NA	NA
AYS80099.1\|4495854_4498263_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	95.1
AYS80100.1\|4498253_4499114_-	DNA adenine methylase	E5G6L8	Salmonella_phage	3.4e-132	81.8
AYS80101.1\|4499110_4499695_-	exonuclease	A0A1S6L012	Salmonella_phage	1.1e-76	73.7
AYS80102.1\|4499691_4499919_-	hypothetical protein	A0A1S6L007	Salmonella_phage	1.0e-35	94.7
AYS80103.1\|4499918_4500152_-	hypothetical protein	A0A1S6L021	Salmonella_phage	9.8e-26	84.4
AYS80104.1\|4500219_4500561_-	hypothetical protein	A0A1S6L019	Salmonella_phage	4.6e-56	99.1
AYS80105.1\|4500524_4500725_-	hypothetical protein	A0A1S6L005	Salmonella_phage	4.6e-32	97.0
AYS80106.1\|4500732_4501242_-	phage regulatory protein	A0A1S6L008	Salmonella_phage	1.3e-83	94.1
AYS80107.1\|4501274_4501517_-	phage regulatory protein	A0A1S6KZZ6	Salmonella_phage	2.3e-38	98.8
AYS80108.1\|4501633_4502266_+	phage repressor protein cI	A0A1S6KZZ7	Salmonella_phage	1.4e-66	58.6
AYS80109.1\|4502269_4503295_+\|integrase	phage integrase	A0A1S6L016	Salmonella_phage	2.7e-200	98.2
AYS80110.1\|4503401_4503755_-	protein samA'	I6S1S3	Salmonella_phage	6.7e-10	59.3
AYS80111.1\|4504371_4504659_+	hypothetical protein	NA	NA	NA	NA
AYS80112.1\|4504669_4505560_+	methyltransferase	NA	NA	NA	NA
AYS80113.1\|4505559_4506306_+	hypothetical protein	NA	NA	NA	NA
AYS80114.1\|4506607_4508578_-	Vi polysaccharide exporter protein	NA	NA	NA	NA
AYS80115.1\|4508597_4509902_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA
AYS80116.1\|4509924_4510620_-	Vi polysaccharide exporter ATP-binding protein	NA	NA	NA	NA
AYS80117.1\|4510645_4511440_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA
AYS80118.1\|4511449_4512517_-	Vi polysaccharide exporter protein	NA	NA	NA	NA
AYS80119.1\|4512561_4514298_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA
AYS80120.1\|4514297_4516793_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA
AYS80121.1\|4516816_4517863_-	Vi polysaccharide biosynthesis epimerase	A0A2K9L0I7	Tupanvirus	1.4e-74	45.0
AYS80122.1\|4517865_4519143_-	Vi polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase	M1HYW7	Paramecium_bursaria_Chlorella_virus	1.6e-21	26.7
AYS80123.1\|4519387_4519927_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA
AYS80124.1\|4520780_4522292_+	DNA helicase	A0A126DN25	Acinetobacter_phage	2.0e-42	29.0
AYS80125.1\|4522275_4523865_+	hypothetical protein	NA	NA	NA	NA
AYS80126.1\|4524028_4525042_+\|integrase	phage integrase	NA	NA	NA	NA
4525219:4525235	attL	NA	NA	NA	NA
AYS80127.1\|4525468_4525762_+	hypothetical protein	NA	NA	NA	NA
AYS80128.1\|4525758_4526247_+	hypothetical protein	NA	NA	NA	NA
AYS80129.1\|4526426_4526879_-	hypothetical protein	NA	NA	NA	NA
AYS80130.1\|4532101_4532563_+	hypothetical protein	NA	NA	NA	NA
AYS80131.1\|4532559_4532781_+	transcriptional regulator	A0A2I7S995	Vibrio_phage	4.6e-17	58.3
AYS80132.1\|4533637_4534420_+	hypothetical protein	NA	NA	NA	NA
AYS80133.1\|4535046_4535271_-	hypothetical protein	NA	NA	NA	NA
AYS80134.1\|4535400_4536405_-	SH3 domain-containing protein	NA	NA	NA	NA
AYS80135.1\|4536715_4537975_-\|integrase	bacteriophage integrase	B7SYF8	Stenotrophomonas_phage	3.2e-78	41.7
4538134:4538150	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4680228 : 4686704

Enterobacteria_phage(66.67%)

capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS80272.1\|4680228_4681305_-	protein kinase	A0A2H4UU60	Bodo_saltans_virus	7.8e-17	28.2
AYS80273.1\|4681301_4682375_-	protein kinase	G9BWE0	Planktothrix_phage	6.5e-56	44.7
AYS80274.1\|4682349_4683513_-	hypothetical protein	NA	NA	NA	NA
AYS80275.1\|4683788_4684355_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.8e-60	64.9
AYS80276.1\|4684370_4684610_-	hypothetical protein	Q7M294	Enterobacteria_phage	3.7e-20	60.5
AYS80277.1\|4684613_4685474_-\|capsid	phage capsid protein	NA	NA	NA	NA
AYS80278.1\|4685896_4686220_+	phage DNA binding protein	Q7M299	Enterobacteria_phage	3.6e-26	70.0
AYS80279.1\|4686203_4686704_+	hypothetical protein	Q7M2A7	Enterobacteria_phage	9.8e-31	70.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP029903

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5598 : 19084

Enterobacteria_phage(36.36%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYS80378.1\|5598_8148_-\|transposase	transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	100.0
AYS80379.1\|8407_8740_+	hypothetical protein	NA	NA	NA	NA
AYS80380.1\|8786_9662_-	Beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
AYS80381.1\|9917_11180_-\|transposase	transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
AYS80382.1\|11361_11673_-	hypothetical protein	Q1MVP5	Enterobacteria_phage	7.2e-56	99.0
AYS80383.1\|11743_12301_+	TnpR	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
AYS80384.1\|12483_13344_+	beta-lactamase	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
AYS80385.1\|13911_14541_-	Type II plasmid partioning protein	E5FFJ3	Burkholderia_phage	2.0e-17	31.1
AYS80386.1\|14741_16013_-	protein ImpB	F1C5A5	Cronobacter_phage	2.2e-143	60.4
AYS80387.1\|16012_16450_-	Protein ImpA	A0A1W6JNS2	Morganella_phage	8.3e-26	48.4
AYS80388.1\|16446_16695_-	Protein ImpC	Q2A098	Sodalis_phage	1.9e-14	48.0
AYS80389.1\|17044_18016_+	hypothetical protein	NA	NA	NA	NA
AYS80390.1\|18400_19084_+	hypothetical protein	A0A2I7RE86	Vibrio_phage	5.1e-30	37.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029902

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP029903

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection