CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029853	Salmonella enterica subsp. enterica serovar Typhi strain 343077_281186 chromosome, complete genome	1 crisprs	DEDDh,WYL,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	0	3	13	0
CP029854	Salmonella enterica subsp. enterica serovar Typhi strain 343077_281186 plasmid pK43, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029853_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029853_1

2853148-2853507

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
GGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

5 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of CP029853_1

>merge|CP029853|1|2853148-2853507|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGGCGCGGGGAACACGGACAGCAACCCGTGTCGGATATCAGACAGATCGGTTTATCCCCGCTGGCGCGGGGAACACACGCGAATCGCCAATCGCCGCCGCGTGAATTGCGGTTTATCCCCGCTGGCGCGGGGAACACCCACGATGTATGCCGACCGTGATTTTTACCGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGATACGCCTTTACGTCGCCCTCTTTGGCGCGCGGTTTATCCCCGCTGGCGCGGGGAACACTAAAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP029853|1|1|2853148-2853481|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GGACAGCAACCCGTGTCGGATATCAGACAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGATCGG

>CP029853|1|1|2853148-2853481|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GGACAGCAACCCGTGTCGGATATCAGACAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGATCGG

>CP029853|1|1|2853150-2853507|PILER-CR
GTTTATCCCCGCTGGCGCGGGGAACACG	GACAGCAACCCGTGTCGGATATCAGACAGATCG
GTTTATCCCCGCTGGCGCGGGGAACACA	CGCGAATCGCCAATCGCCGCCGCGTGAATTGCG
GTTTATCCCCGCTGGCGCGGGGAACACC	CACGATGTATGCCGACCGTGATTTTTACCGCCG
GTTTATCCCCGCTGGCGCGGGGAACACA	GATACGCCTTTACGTCGCCCTCTTTGGCGCGCG
GTTTATCCCCGCTGGCGCGGGGAACACT	AAAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGATCG
GTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP029853.1\|AYU04405.1\|2847281_2847992_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP029853.1\|AYU04409.1\|2849478_2850918_-\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235349
CP029853.1\|AYU04403.1\|2845756_2846806_-\|tRNA-pseudouridine-synthase-D	unknown	unknown	gnl\|CDD\|234884
CP029853.1\|AYU04419.1\|2859636_2859810_-\|hypothetical-protein	unknown	unknown	unknown
CP029853.1\|AYU04420.1\|2862917_2863871_+\|pathogenicity-island-1-effector-protein-SopD	unknown	unknown	gnl\|CDD\|185277
CP029853.1\|AYU04413.1\|2853887_2854805_-\|CRISPR/Cas-system-associated-protein-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP029853.1\|AYU04404.1\|2846802_2847282_-\|2C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP029853.1\|AYU04414.1\|2854804_2855509_-\|CRISPR/Cas-system-associated-RAMP-superfamily-protein	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
CP029853.1\|AYU04418.1\|2857943_2859479_-\|Cse1-family-CRISPR-associated-protein	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP029853.1\|AYU04417.1\|2857324_2857927_-\|CRISPR/Cas-system-associated-protein-Cse2	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
CP029853.1\|AYU04416.1\|2856243_2857308_-\|Cse4-family-CRISPR-associated-protein	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP029853.1\|AYU04412.1\|2853591_2853885_-\|ssRNA-endonuclease	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP029853.1\|AYU04421.1\|2863958_2864693_-\|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase	unknown	unknown	gnl\|CDD\|234997
CP029853.1\|AYU04408.1\|2848886_2849492_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP029853.1\|AYU04410.1\|2850927_2851836_-\|ATP-sulfurylase	unknown	unknown	gnl\|CDD\|235375
CP029853.1\|AYU04406.1\|2848010_2848322_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP029853.1\|AYU04407.1\|2848512_2848869_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371891
CP029853.1\|AYU04411.1\|2852086_2853133_+\|alkaline-phosphatase-isozyme-conversion-protein	unknown	unknown	gnl\|CDD\|182299
CP029853.1\|AYU04415.1\|2855508_2856234_-\|CRISPR-associated-protein-Cas5	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP029853.1\|AYU04402.1\|2845014_2845776_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732

Protein	Function_ID	Function_description	E-value
CP029853.1\|AYU04405.1\|2847281_2847992_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
CP029853.1\|AYU04409.1\|2849478_2850918_-\|ATP-sulfurylase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP029853.1\|AYU04403.1\|2845756_2846806_-\|tRNA-pseudouridine-synthase-D	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP029853.1\|AYU04420.1\|2862917_2863871_+\|pathogenicity-island-1-effector-protein-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP029853.1\|AYU04413.1\|2853887_2854805_-\|CRISPR/Cas-system-associated-protein-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.77553e-155
CP029853.1\|AYU04404.1\|2846802_2847282_-\|2C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP029853.1\|AYU04414.1\|2854804_2855509_-\|CRISPR/Cas-system-associated-RAMP-superfamily-protein	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	2.23447e-89
CP029853.1\|AYU04418.1\|2857943_2859479_-\|Cse1-family-CRISPR-associated-protein	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP029853.1\|AYU04417.1\|2857324_2857927_-\|CRISPR/Cas-system-associated-protein-Cse2	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.74874e-39
CP029853.1\|AYU04416.1\|2856243_2857308_-\|Cse4-family-CRISPR-associated-protein	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.07119e-119
CP029853.1\|AYU04412.1\|2853591_2853885_-\|ssRNA-endonuclease	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.81067e-65
CP029853.1\|AYU04421.1\|2863958_2864693_-\|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.17372e-138
CP029853.1\|AYU04408.1\|2848886_2849492_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP029853.1\|AYU04410.1\|2850927_2851836_-\|ATP-sulfurylase	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP029853.1\|AYU04406.1\|2848010_2848322_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP029853.1\|AYU04407.1\|2848512_2848869_-\|hypothetical-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP029853.1\|AYU04411.1\|2852086_2853133_+\|alkaline-phosphatase-isozyme-conversion-protein	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP029853.1\|AYU04415.1\|2855508_2856234_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.27863e-48
CP029853.1\|AYU04402.1\|2845014_2845776_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146

>CP029853.1|AYU04411.1|2852086_2853133_+|alkaline-phosphatase-isozyme-conversion-protein
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLNNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP029853.1|AYU04410.1|2850927_2851836_-|ATP-sulfurylase
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP029853.1|AYU04409.1|2849478_2850918_-|ATP-sulfurylase
MNTILAQQIASEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNPDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEVCAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP029853.1|AYU04408.1|2848886_2849492_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP029853.1|AYU04407.1|2848512_2848869_-|hypothetical-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP029853.1|AYU04406.1|2848010_2848322_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP029853.1|AYU04405.1|2847281_2847992_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP029853.1|AYU04404.1|2846802_2847282_-|2C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP029853.1|AYU04403.1|2845756_2846806_-|tRNA-pseudouridine-synthase-D
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADVLAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP029853.1|AYU04402.1|2845014_2845776_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>CP029853.1|AYU04412.1|2853591_2853885_-|ssRNA-endonuclease
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>CP029853.1|AYU04413.1|2853887_2854805_-|CRISPR/Cas-system-associated-protein-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWGGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFEIVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSHPIAIPLPVALGDSGHRST
>CP029853.1|AYU04414.1|2854804_2855509_-|CRISPR/Cas-system-associated-RAMP-superfamily-protein
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHSLFLIETKLFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>CP029853.1|AYU04415.1|2855508_2856234_-|CRISPR-associated-protein-Cas5
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>CP029853.1|AYU04416.1|2856243_2857308_-|Cse4-family-CRISPR-associated-protein
MIMTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFDRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>CP029853.1|AYU04417.1|2857324_2857927_-|CRISPR/Cas-system-associated-protein-Cse2
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERSRIRWANEYLSTSRGK
>CP029853.1|AYU04418.1|2857943_2859479_-|Cse1-family-CRISPR-associated-protein
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMNKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>CP029853.1|AYU04419.1|2859636_2859810_-|hypothetical-protein
MKSIINWDTGNWPVFLSGLGYPRWRGERCAIKTASTVYPIILGNVLKITDNYKKYIV
>CP029853.1|AYU04420.1|2862917_2863871_+|pathogenicity-island-1-effector-protein-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP029853.1|AYU04421.1|2863958_2864693_-|3'-phosphoadenosine-5'-phosphosulfate-sulfotransferase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWAQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029853_1	1.3\|2853299\|32\|CP029853\|CRISPRCasFinder,CRT	2853299-2853330	32	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	453979-454010	5	0.844
CP029853_1	1.3\|2853299\|32\|CP029853\|CRISPRCasFinder,CRT	2853299-2853330	32	NZ_KU130294	Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence	251896-251927	5	0.844
CP029853_1	1.3\|2853299\|32\|CP029853\|CRISPRCasFinder,CRT	2853299-2853330	32	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	6517-6548	5	0.844
CP029853_1	1.3\|2853299\|32\|CP029853\|CRISPRCasFinder,CRT	2853299-2853330	32	NZ_CP039989	Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence	238872-238903	5	0.844
CP029853_1	1.3\|2853299\|32\|CP029853\|CRISPRCasFinder,CRT	2853299-2853330	32	NZ_MN433457	Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence	235351-235382	5	0.844
CP029853_1	1.3\|2853299\|32\|CP029853\|CRISPRCasFinder,CRT	2853299-2853330	32	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	378779-378810	5	0.844
CP029853_1	1.3\|2853299\|32\|CP029853\|CRISPRCasFinder,CRT	2853299-2853330	32	NZ_CP045003	Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence	82539-82570	5	0.844
CP029853_1	1.3\|2853299\|32\|CP029853\|CRISPRCasFinder,CRT	2853299-2853330	32	NZ_CP045917	Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence	224279-224310	5	0.844
CP029853_1	1.3\|2853299\|32\|CP029853\|CRISPRCasFinder,CRT	2853299-2853330	32	MF344571	Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence	221127-221158	5	0.844
CP029853_1	1.3\|2853299\|32\|CP029853\|CRISPRCasFinder,CRT	2853299-2853330	32	MF344569	Pseudomonas aeruginosa plasmid p12939-PER, complete sequence	284046-284077	5	0.844
CP029853_1	1.3\|2853299\|32\|CP029853\|CRISPRCasFinder,CRT	2853299-2853330	32	MF344570	Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence	219145-219176	5	0.844
CP029853_1	1.3\|2853299\|32\|CP029853\|CRISPRCasFinder,CRT	2853299-2853330	32	NZ_CP039294	Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence	55495-55526	5	0.844
CP029853_1	1.3\|2853299\|32\|CP029853\|CRISPRCasFinder,CRT	2853299-2853330	32	CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	376216-376247	5	0.844
CP029853_1	1.3\|2853299\|32\|CP029853\|CRISPRCasFinder,CRT	2853299-2853330	32	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	134871-134902	5	0.844
CP029853_1	1.3\|2853299\|32\|CP029853\|CRISPRCasFinder,CRT	2853299-2853330	32	NZ_CP016215	Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence	88841-88872	5	0.844
CP029853_1	1.8\|2853300\|33\|CP029853\|PILER-CR	2853300-2853332	33	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	453978-454010	6	0.818
CP029853_1	1.8\|2853300\|33\|CP029853\|PILER-CR	2853300-2853332	33	NZ_KU130294	Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence	251896-251928	6	0.818
CP029853_1	1.8\|2853300\|33\|CP029853\|PILER-CR	2853300-2853332	33	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	6516-6548	6	0.818
CP029853_1	1.8\|2853300\|33\|CP029853\|PILER-CR	2853300-2853332	33	NZ_CP039989	Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence	238872-238904	6	0.818
CP029853_1	1.8\|2853300\|33\|CP029853\|PILER-CR	2853300-2853332	33	NZ_MN433457	Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence	235350-235382	6	0.818
CP029853_1	1.8\|2853300\|33\|CP029853\|PILER-CR	2853300-2853332	33	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	378778-378810	6	0.818
CP029853_1	1.8\|2853300\|33\|CP029853\|PILER-CR	2853300-2853332	33	NZ_CP045003	Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence	82539-82571	6	0.818
CP029853_1	1.8\|2853300\|33\|CP029853\|PILER-CR	2853300-2853332	33	NZ_CP045917	Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence	224279-224311	6	0.818
CP029853_1	1.8\|2853300\|33\|CP029853\|PILER-CR	2853300-2853332	33	MF344571	Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence	221127-221159	6	0.818
CP029853_1	1.8\|2853300\|33\|CP029853\|PILER-CR	2853300-2853332	33	MF344569	Pseudomonas aeruginosa plasmid p12939-PER, complete sequence	284046-284078	6	0.818
CP029853_1	1.8\|2853300\|33\|CP029853\|PILER-CR	2853300-2853332	33	MF344570	Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence	219145-219177	6	0.818
CP029853_1	1.8\|2853300\|33\|CP029853\|PILER-CR	2853300-2853332	33	NZ_CP039294	Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence	55495-55527	6	0.818
CP029853_1	1.8\|2853300\|33\|CP029853\|PILER-CR	2853300-2853332	33	CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	376216-376248	6	0.818
CP029853_1	1.8\|2853300\|33\|CP029853\|PILER-CR	2853300-2853332	33	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	134871-134903	6	0.818
CP029853_1	1.8\|2853300\|33\|CP029853\|PILER-CR	2853300-2853332	33	NZ_CP016215	Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence	88840-88872	6	0.818
CP029853_1	1.5\|2853421\|32\|CP029853\|CRISPRCasFinder,CRT	2853421-2853452	32	KR052482	Sinorhizobium phage phiN3, complete genome	197290-197321	9	0.719

1. spacer 1.3|2853299|32|CP029853|CRISPRCasFinder,CRT matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

2. spacer 1.3|2853299|32|CP029853|CRISPRCasFinder,CRT matches to NZ_KU130294 (Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

3. spacer 1.3|2853299|32|CP029853|CRISPRCasFinder,CRT matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

4. spacer 1.3|2853299|32|CP029853|CRISPRCasFinder,CRT matches to NZ_CP039989 (Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

5. spacer 1.3|2853299|32|CP029853|CRISPRCasFinder,CRT matches to NZ_MN433457 (Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

6. spacer 1.3|2853299|32|CP029853|CRISPRCasFinder,CRT matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

7. spacer 1.3|2853299|32|CP029853|CRISPRCasFinder,CRT matches to NZ_CP045003 (Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

8. spacer 1.3|2853299|32|CP029853|CRISPRCasFinder,CRT matches to NZ_CP045917 (Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

9. spacer 1.3|2853299|32|CP029853|CRISPRCasFinder,CRT matches to MF344571 (Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

10. spacer 1.3|2853299|32|CP029853|CRISPRCasFinder,CRT matches to MF344569 (Pseudomonas aeruginosa plasmid p12939-PER, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

11. spacer 1.3|2853299|32|CP029853|CRISPRCasFinder,CRT matches to MF344570 (Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

12. spacer 1.3|2853299|32|CP029853|CRISPRCasFinder,CRT matches to NZ_CP039294 (Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

13. spacer 1.3|2853299|32|CP029853|CRISPRCasFinder,CRT matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

14. spacer 1.3|2853299|32|CP029853|CRISPRCasFinder,CRT matches to NZ_CP015879 (Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

15. spacer 1.3|2853299|32|CP029853|CRISPRCasFinder,CRT matches to NZ_CP016215 (Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

16. spacer 1.8|2853300|33|CP029853|PILER-CR matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

17. spacer 1.8|2853300|33|CP029853|PILER-CR matches to NZ_KU130294 (Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

18. spacer 1.8|2853300|33|CP029853|PILER-CR matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

19. spacer 1.8|2853300|33|CP029853|PILER-CR matches to NZ_CP039989 (Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

20. spacer 1.8|2853300|33|CP029853|PILER-CR matches to NZ_MN433457 (Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

21. spacer 1.8|2853300|33|CP029853|PILER-CR matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

22. spacer 1.8|2853300|33|CP029853|PILER-CR matches to NZ_CP045003 (Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

23. spacer 1.8|2853300|33|CP029853|PILER-CR matches to NZ_CP045917 (Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

24. spacer 1.8|2853300|33|CP029853|PILER-CR matches to MF344571 (Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

25. spacer 1.8|2853300|33|CP029853|PILER-CR matches to MF344569 (Pseudomonas aeruginosa plasmid p12939-PER, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

26. spacer 1.8|2853300|33|CP029853|PILER-CR matches to MF344570 (Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

27. spacer 1.8|2853300|33|CP029853|PILER-CR matches to NZ_CP039294 (Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

28. spacer 1.8|2853300|33|CP029853|PILER-CR matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

29. spacer 1.8|2853300|33|CP029853|PILER-CR matches to NZ_CP015879 (Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

30. spacer 1.8|2853300|33|CP029853|PILER-CR matches to NZ_CP016215 (Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

31. spacer 1.5|2853421|32|CP029853|CRISPRCasFinder,CRT matches to KR052482 (Sinorhizobium phage phiN3, complete genome) position: , mismatch: 9, identity: 0.719

taaaacaccggttgcgcaacctccgcggggat	CRISPR spacer
aacaacaccggttgcgaaacctacgcaaaaaa	Protospacer
 * ************* ***** ***....*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

868659 : 875971

Dickeya_phage(16.67%)

protease,integrase

attL 869910:869924|attR 881089:881103

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU02619.1\|868659_869778_+	hypothetical protein	A0A140XAI1	Dickeya_phage	8.1e-09	39.8
AYU02620.1\|869774_871721_+	macrolide transporter ATP-binding protein/permease	G9BWD6	Planktothrix_phage	2.0e-39	43.1
869910:869924	attL	NA	NA	NA	NA
AYU02621.1\|871850_872072_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AYU02622.1\|872395_872716_+\|protease	ATP-dependent Clp protease adaptor protein	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AYU02623.1\|872746_875023_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.8e-164	42.2
AYU02624.1\|875593_875971_-\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
881089:881103	attR	NA	NA	NA	NA

DBSCAN-SWA_2

946871 : 1024184

Salmonella_phage(73.33%)

tail,integrase,protease,transposase,terminase

attL 928950:928969|attR 999545:999564

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
928950:928969	attL	NA	NA	NA	NA
AYU02674.1\|946871_948212_-\|integrase	integrase	S4TSP2	Salmonella_phage	7.9e-261	99.8
AYU02675.1\|948208_948457_-	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
AYU02676.1\|948497_948743_-	bacteriophage protein	S4TR31	Salmonella_phage	1.3e-36	96.2
AYU02677.1\|948742_949624_-	DNA methylase	A0A0M4R347	Salmonella_phage	1.2e-153	93.0
AYU02678.1\|949620_950685_-	bacteriophage protein	T1SBJ4	Salmonella_phage	6.3e-152	74.6
AYU02679.1\|950762_951443_-	exonuclease	A0A0M3ULE0	Salmonella_phage	1.9e-130	98.7
AYU02680.1\|951439_952225_-	bacteriophage recombination protein	A0A0M4RD39	Salmonella_phage	9.7e-150	99.6
AYU02681.1\|952230_952527_-	host-nuclease inhibitor protein	A0A0M5M5Z9	Salmonella_phage	4.4e-47	96.9
AYU02682.1\|952617_952818_-	prophage Kil protein	G8C7T2	Escherichia_phage	2.4e-12	48.4
AYU02683.1\|953106_953511_-	DNA-binding protein	H6WRX4	Salmonella_phage	7.1e-72	99.3
AYU02684.1\|953842_954217_+	DNA-binding protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
AYU02685.1\|954301_955285_+	bacteriophage protein	H6WRX7	Salmonella_phage	2.1e-162	99.7
AYU02686.1\|955287_956037_+	DNA replication protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
AYU02687.1\|956047_956395_+	DNA-binding protein	H6WRX9	Salmonella_phage	4.8e-53	90.4
AYU02688.1\|956391_956916_+	bacteriophage protein	A0A220NQV2	Salmonella_phage	1.8e-91	99.4
AYU02689.1\|956915_957389_+	methyltransferase	H9C170	Pectobacterium_phage	1.6e-67	80.1
AYU02690.1\|957392_957965_+	bacteriophage protein	S4TSR6	Salmonella_phage	1.3e-66	68.0
AYU02691.1\|958058_958325_+	bacteriophage protein	S4TNF2	Salmonella_phage	1.5e-46	100.0
AYU02692.1\|958406_958568_+	bacteriophage protein	NA	NA	NA	NA
AYU02693.1\|959000_959498_+	bacteriophage protein	NA	NA	NA	NA
AYU02694.1\|959682_959922_+	damage-inducible protein	H6WRY5	Salmonella_phage	3.9e-38	100.0
AYU02695.1\|959911_960217_+	bacteriophage protein	H6WRY6	Salmonella_phage	9.8e-42	100.0
AYU02696.1\|960256_960859_+	bacteriophage protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
AYU02697.1\|961067_961679_+	bacteriophage lambda protein NinG	A0A0M4RU10	Salmonella_phage	2.5e-92	99.5
AYU02698.1\|961811_962609_+	prophage antitermination protein	A0A0M4S661	Salmonella_phage	3.4e-150	99.2
AYU02699.1\|963007_963133_+	bacteriophage protein	NA	NA	NA	NA
AYU02700.1\|963268_963718_-	lipoprotein	NA	NA	NA	NA
AYU02701.1\|963934_964324_+	prophage membrane protein	K7PHB9	Enterobacterial_phage	3.1e-40	70.2
AYU02702.1\|964310_964592_+	prophage membrane protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
AYU02703.1\|964591_965206_+	bacteriophage protein	Q8HA86	Salmonella_phage	3.2e-108	93.1
AYU02704.1\|965425_965680_+	hypothetical protein	NA	NA	NA	NA
AYU02705.1\|965784_966162_+	hypothetical protein	Q6UAR9	Klebsiella_phage	4.9e-43	68.5
AYU02706.1\|966225_966486_+	hypothetical protein	NA	NA	NA	NA
AYU02707.1\|966575_967328_+\|terminase	prophage terminase small subunit	A0A0M3ULJ9	Salmonella_phage	3.4e-11	56.5
AYU02708.1\|967293_968697_+	bacteriophage protein	A0A077KAW0	Edwardsiella_phage	6.5e-189	70.1
AYU02709.1\|968696_970163_+	hypothetical protein	A0A0M4S6U1	Salmonella_phage	6.4e-272	96.7
AYU02710.1\|970257_970788_+	hypothetical protein	A0A0M4REK0	Salmonella_phage	8.7e-86	87.4
AYU02711.1\|970802_972035_+	hypothetical protein	A0A0M4R5A6	Salmonella_phage	1.4e-227	99.0
AYU02712.1\|972039_972537_+	bacteriophage protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
AYU02713.1\|972548_973490_+	bacteriophage protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	100.0
AYU02714.1\|973531_973900_+	bacteriophage protein	A0A0M4RTX5	Salmonella_phage	8.7e-61	100.0
AYU02715.1\|973865_974273_+	bacteriophage protein	A0A0M5M3S2	Salmonella_phage	7.1e-72	97.8
AYU02716.1\|974269_974824_+	bacteriophage protein	A0A0M4S631	Salmonella_phage	4.8e-95	100.0
AYU02717.1\|974810_975200_+	bacteriophage protein	A0A0M3ULK0	Salmonella_phage	6.0e-68	98.4
AYU02718.1\|975174_975738_+	bacteriophage protein	A0A0M4R331	Salmonella_phage	8.9e-81	75.3
AYU02719.1\|975741_976887_+	bacteriophage protein	A0A2H4J8G4	uncultured_Caudovirales_phage	2.2e-163	74.5
AYU02720.1\|976898_977339_+	bacteriophage protein	A0A2H4J619	uncultured_Caudovirales_phage	3.5e-56	74.7
AYU02721.1\|977342_977795_+	bacteriophage protein	A0A0M4S6U8	Salmonella_phage	1.9e-57	76.6
AYU02722.1\|977972_979925_+	bacteriophage protein	A0A0M4REK7	Salmonella_phage	1.8e-181	56.0
AYU02723.1\|979924_980575_+	bacteriophage protein	A0A0M3ULD5	Salmonella_phage	3.0e-56	60.6
AYU02724.1\|980578_980881_+	bacteriophage protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	57.0
AYU02725.1\|980883_981915_+	bacteriophage protein	A0A2H4J1B2	uncultured_Caudovirales_phage	1.2e-96	51.4
AYU02726.1\|981911_982247_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.1e-20	52.2
AYU02727.1\|982441_983173_+	bacteriophage protein	NA	NA	NA	NA
AYU02728.1\|983172_983601_+	bacteriophage protein	NA	NA	NA	NA
AYU02729.1\|983659_984415_+	bacteriophage protein	A0A0M5M1K7	Salmonella_phage	4.1e-105	85.3
AYU02730.1\|984502_984640_+	bacteriophage protein	A0A0M4S639	Salmonella_phage	2.0e-18	100.0
AYU02731.1\|984655_985009_+	bacteriophage protein	A0A0M4R339	Salmonella_phage	3.2e-60	98.3
AYU02732.1\|985009_986209_+	bacteriophage protein	A0A0M4RD32	Salmonella_phage	2.5e-213	97.2
AYU02733.1\|986205_986886_+	bacteriophage protein	A0A0M5M1K4	Salmonella_phage	6.9e-128	98.7
AYU02734.1\|986885_988397_+\|tail	bacteriophage tail protein	S4TP62	Salmonella_phage	1.7e-110	59.1
AYU02735.1\|988411_988930_+\|tail	tail fiber protein	A0A1B0VCD0	Salmonella_phage	1.7e-46	62.8
AYU02736.1\|989851_990553_-	hypothetical protein	NA	NA	NA	NA
AYU02737.1\|990865_991144_-	hypothetical protein	S4TNM0	Salmonella_phage	2.4e-26	92.3
AYU02738.1\|991569_994182_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.1e-19	22.6
AYU02739.1\|994389_995400_+	dihydroorotate dehydrogenase	NA	NA	NA	NA
AYU02740.1\|995562_996108_+	hypothetical protein	NA	NA	NA	NA
AYU02741.1\|996104_997214_-	MOSC domain-containing protein	NA	NA	NA	NA
AYU02742.1\|997312_999421_+	23S rRNA m(2)G2445 methyltransferase	W6LLI2	Streptococcus_phage	5.1e-20	29.6
AYU02743.1\|999433_1001341_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
999545:999564	attR	NA	NA	NA	NA
AYU02744.1\|1001355_1002609_+	inner membrane protein	NA	NA	NA	NA
AYU02745.1\|1002613_1004254_+	paraquat-inducible protein B	NA	NA	NA	NA
AYU02746.1\|1004250_1004814_+	lipoprotein	NA	NA	NA	NA
AYU02747.1\|1005067_1005235_+	ribosome modulation factor	NA	NA	NA	NA
AYU02748.1\|1005334_1005853_-	D-3-hydroxydecanoyl-(acyl carrier-protein) dehydratase	NA	NA	NA	NA
AYU02749.1\|1005921_1007682_-\|protease	ATP-dependent protease	NA	NA	NA	NA
AYU02750.1\|1007867_1008320_+	Ter macrodomain organizer matS-binding protein	NA	NA	NA	NA
AYU02751.1\|1008391_1009444_-	outer membrane protein A	NA	NA	NA	NA
AYU02752.1\|1009798_1010308_-	cell division inhibitor	NA	NA	NA	NA
AYU02753.1\|1010524_1011130_+	competence-specific transcriptional regulator TfoX	NA	NA	NA	NA
AYU02754.1\|1011116_1013270_-	inner membrane protein	NA	NA	NA	NA
AYU02755.1\|1013288_1013735_-	hypothetical protein	NA	NA	NA	NA
AYU02756.1\|1013858_1015913_+	helicase IV	A7KV33	Bacillus_phage	6.5e-20	27.6
AYU02757.1\|1015948_1016407_-	methylglyoxal synthase	NA	NA	NA	NA
AYU02758.1\|1016501_1017164_-	hypothetical protein	NA	NA	NA	NA
AYU02759.1\|1017334_1017751_+	hypothetical protein	NA	NA	NA	NA
AYU02760.1\|1017795_1018113_-	heat shock protein HspQ	NA	NA	NA	NA
AYU02761.1\|1018170_1019382_-	23S rRNA m(5)C1962 methyltransferase	NA	NA	NA	NA
AYU02762.1\|1020513_1020972_+\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYU02763.1\|1021708_1021990_+	acylphosphatase	NA	NA	NA	NA
AYU02764.1\|1021986_1022316_-	sulfite reductase	NA	NA	NA	NA
AYU02765.1\|1022402_1023062_-	hypothetical protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
AYU02766.1\|1023725_1024184_+\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1467480 : 1540594

Burkholderia_virus(43.24%)

tail,tRNA,protease,plate,head,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU03164.1\|1467480_1467939_-\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYU03165.1\|1468441_1468723_+	stress response protein	NA	NA	NA	NA
AYU03166.1\|1468991_1469813_+\|protease	serine protease	NA	NA	NA	NA
AYU03167.1\|1469847_1470177_-	multidrug efflux system protein MdtI	NA	NA	NA	NA
AYU03168.1\|1470163_1470526_-	multidrug efflux system protein MdtJ	NA	NA	NA	NA
AYU03169.1\|1470637_1470808_-	hypothetical protein	NA	NA	NA	NA
AYU03170.1\|1470942_1471977_+	hypothetical protein	NA	NA	NA	NA
AYU03171.1\|1472151_1473540_-	pyridine nucleotide transhydrogenase subunit beta	NA	NA	NA	NA
AYU03172.1\|1473550_1475080_-	pyridine nucleotide transhydrogenase subunit alpha	NA	NA	NA	NA
AYU03173.1\|1475606_1476551_+	hypothetical protein	NA	NA	NA	NA
AYU03174.1\|1476732_1477122_-	bacteriophage transcriptional regulator	Q6QIE8	Burkholderia_phage	4.5e-31	54.2
AYU03175.1\|1477093_1477546_-	hypothetical protein	A4JWM5	Burkholderia_virus	1.2e-24	46.6
AYU03176.1\|1477740_1477971_-	hypothetical protein	NA	NA	NA	NA
AYU03177.1\|1477967_1478651_-	hypothetical protein	A0A2P9JZH4	Alteromonadaceae_phage	2.6e-34	37.3
AYU03178.1\|1478647_1478863_-	hypothetical protein	NA	NA	NA	NA
AYU03179.1\|1478855_1479239_-	hypothetical protein	K7PJQ4	Enterobacteria_phage	2.3e-27	58.9
AYU03180.1\|1479235_1479538_-	hypothetical protein	NA	NA	NA	NA
AYU03181.1\|1479547_1479820_-	hypothetical protein	NA	NA	NA	NA
AYU03182.1\|1480108_1480639_-	bacteriophage host-nuclease inhibitor protein	L7P7T1	Pseudomonas_phage	3.4e-58	66.1
AYU03183.1\|1480666_1480936_-	hypothetical protein	NA	NA	NA	NA
AYU03184.1\|1480938_1482105_-	ExeA protein	A4JWN1	Burkholderia_virus	3.3e-122	59.7
AYU03185.1\|1482115_1483885_-	hypothetical protein	Q6QIE0	Burkholderia_phage	2.8e-229	68.5
AYU03186.1\|1484062_1484494_-	hypothetical protein	A4JWN3	Burkholderia_virus	4.5e-32	57.3
AYU03187.1\|1484489_1485086_+	hypothetical protein	NA	NA	NA	NA
AYU03188.1\|1485329_1485680_+	hypothetical protein	A4JWP3	Burkholderia_virus	4.5e-22	53.0
AYU03189.1\|1486394_1487045_+	lipoprotein	Q5ZQY9	Pseudomonas_phage	8.1e-09	32.9
AYU03190.1\|1487041_1487368_+	hypothetical protein	Q6QIC4	Burkholderia_phage	9.6e-19	49.5
AYU03191.1\|1487367_1487679_+	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
AYU03192.1\|1487678_1488224_+	hypothetical protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
AYU03193.1\|1488220_1489816_+	hypothetical protein	A4JWJ4	Burkholderia_virus	9.3e-184	62.6
AYU03194.1\|1489815_1491312_+	hypothetical protein	A4JWJ5	Burkholderia_virus	8.0e-169	59.6
AYU03195.1\|1491292_1492114_+\|head	phage head morphogenesis protein	A4JWJ6	Burkholderia_virus	5.3e-98	61.2
AYU03196.1\|1492116_1492575_+	bacteriophage protein	Q6QIB8	Burkholderia_phage	1.2e-30	44.8
AYU03197.1\|1492789_1493905_+	hypothetical protein	A4JWJ9	Burkholderia_virus	7.9e-97	51.1
AYU03198.1\|1493919_1494873_+	hypothetical protein	A4JWK0	Burkholderia_virus	5.2e-65	44.5
AYU03199.1\|1494882_1495221_+	hypothetical protein	NA	NA	NA	NA
AYU03200.1\|1495222_1495669_+	hypothetical protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
AYU03201.1\|1495668_1496133_+	hypothetical protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
AYU03202.1\|1496129_1496384_+	hypothetical protein	NA	NA	NA	NA
AYU03203.1\|1496373_1497801_+\|tail	bacteriophage tail sheath protein	A4JWK5	Burkholderia_virus	3.7e-216	77.4
AYU03204.1\|1497800_1498322_+\|tail	tail core protein	A4JWK6	Burkholderia_virus	8.0e-68	68.2
AYU03205.1\|1498324_1498606_+	hypothetical protein	NA	NA	NA	NA
AYU03206.1\|1498703_1499039_+	hypothetical protein	NA	NA	NA	NA
AYU03207.1\|1499214_1501680_+	bacteriophage protein	A4JWL0	Burkholderia_virus	1.1e-167	42.5
AYU03208.1\|1501679_1502564_+	hypothetical protein	A4JWL1	Burkholderia_virus	7.5e-50	47.0
AYU03209.1\|1502560_1502776_+\|tail	bacteriophage tail fiber protein	Q6QIA3	Burkholderia_phage	2.4e-18	60.0
AYU03210.1\|1502763_1503918_+	bacteriophage regulatory protein	Q6QIA2	Burkholderia_phage	4.7e-84	47.1
AYU03211.1\|1503914_1504442_+\|plate	bacteriophage baseplate protein	Q6QIA1	Burkholderia_phage	1.5e-21	46.5
AYU03212.1\|1504498_1504846_+\|plate	bacteriophage baseplate protein	Q6QIA0	Burkholderia_phage	8.6e-34	60.6
AYU03213.1\|1504836_1505940_+\|plate	bacteriophage baseplate assembly protein	Q6QI99	Burkholderia_phage	5.4e-106	54.3
AYU03214.1\|1505932_1506511_+\|tail	bacteriophage tail fiber protein	A4JWL7	Burkholderia_virus	6.4e-66	65.8
AYU03215.1\|1506513_1507539_+\|tail	bacteriophage tail fiber protein	M1TAS6	Escherichia_phage	1.6e-64	53.3
AYU03216.1\|1508052_1508670_+\|tail	bacteriophage tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	5.8e-65	59.9
AYU03217.1\|1509696_1510269_+	DNA-invertase	A0A0A7NPV4	Enterobacteria_phage	8.8e-84	84.7
AYU03218.1\|1510549_1511932_+	amino acid permease	NA	NA	NA	NA
AYU03219.1\|1511993_1512329_-	hypothetical protein	NA	NA	NA	NA
AYU03220.1\|1512455_1513187_+	two-component response regulator	NA	NA	NA	NA
AYU03221.1\|1513667_1514819_+	outer membrane protein	Q1MVN1	Enterobacteria_phage	4.2e-117	59.1
AYU03222.1\|1514971_1516678_+	metal-dependent hydrolase	NA	NA	NA	NA
AYU03223.1\|1516785_1518090_+	two component sensor kinase	W8CYF6	Bacillus_phage	5.7e-14	22.7
AYU03224.1\|1518165_1519095_+	DNA sequence-specific contrahelicase	NA	NA	NA	NA
AYU03225.1\|1519091_1520495_-	fumarate hydratase class II	NA	NA	NA	NA
AYU03226.1\|1520662_1522309_-	Fumarate hydratase class I	NA	NA	NA	NA
AYU03227.1\|1522508_1523684_+	mannose-6-phosphate isomerase	NA	NA	NA	NA
AYU03228.1\|1523786_1525295_+	hypothetical protein	NA	NA	NA	NA
AYU03229.1\|1526000_1527002_+	adenosine deaminase	NA	NA	NA	NA
AYU03230.1\|1527075_1528191_-	oxidoreductase	NA	NA	NA	NA
AYU03231.1\|1528293_1528449_+	hypothetical protein	NA	NA	NA	NA
AYU03232.1\|1528747_1528963_+	oriC-binding nucleoid-associated protein	NA	NA	NA	NA
AYU03233.1\|1529051_1529492_+	hypothetical protein	NA	NA	NA	NA
AYU03234.1\|1529568_1530150_+	Na(+)-translocating NADH-quinone reductase subunit E	NA	NA	NA	NA
AYU03235.1\|1530149_1530728_+	ferredoxin-like protein	NA	NA	NA	NA
AYU03236.1\|1530720_1532742_+	NADH reducing dehydrogenase	NA	NA	NA	NA
AYU03237.1\|1532742_1533801_+	electron transport complex protein RnfD	NA	NA	NA	NA
AYU03238.1\|1533804_1534425_+	electron transport complex protein RnfG	NA	NA	NA	NA
AYU03239.1\|1534427_1535120_+	electron transport complex protein RsxE	NA	NA	NA	NA
AYU03240.1\|1535119_1535755_+	endonuclease III	NA	NA	NA	NA
AYU03241.1\|1536355_1537861_+	proton/oligopeptide symporter	NA	NA	NA	NA
AYU03242.1\|1537965_1538571_+	glutathione S-transferase	NA	NA	NA	NA
AYU03243.1\|1539319_1540594_-\|tRNA	tyrosyl-tRNA synthetase	K4F5T3	Cronobacter_phage	1.6e-85	42.1

DBSCAN-SWA_4

1721625 : 1726037

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU03427.1\|1721625_1721865_+	virulence protein	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
AYU03428.1\|1722737_1723547_+	toxin-like protein	A5LH53	Enterobacteria_phage	2.1e-62	50.0
AYU03429.1\|1723619_1723997_+	hypothetical protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
AYU03430.1\|1724144_1724687_-	hypothetical protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
AYU03431.1\|1724878_1725607_-	pertussis toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	4.9e-63	53.3
AYU03432.1\|1725623_1726037_-	pertussis-like toxin subunit	A0A0U2KD34	Escherichia_phage	1.4e-19	38.6

DBSCAN-SWA_5

1826112 : 1862199

Salmonella_phage(36.59%)

integrase,holin

attL 1852665:1852678|attR 1867724:1867737

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU03519.1\|1826112_1826466_-	hypothetical protein	A0A0M4RTY3	Salmonella_phage	1.0e-29	86.5
AYU03520.1\|1826465_1827533_-	bacteriophage protein	A0A0M4QX01	Salmonella_phage	7.7e-158	82.8
AYU03521.1\|1827535_1827838_-	bacteriophage protein	A0A0M4R5B7	Salmonella_phage	2.2e-49	92.0
AYU03522.1\|1827837_1828425_-	bacteriophage protein	A0A0M3ULD5	Salmonella_phage	1.5e-83	88.0
AYU03523.1\|1828424_1830413_-	bacteriophage protein	A0A0M4REK7	Salmonella_phage	1.0e-272	74.8
AYU03524.1\|1830590_1831043_-	bacteriophage protein	A0A0M4S6U8	Salmonella_phage	4.7e-56	72.7
AYU03525.1\|1831046_1831487_-	bacteriophage protein	A0A2H4J619	uncultured_Caudovirales_phage	7.0e-57	75.3
AYU03526.1\|1831497_1832643_-	hypothetical protein	A0A2H4J8G4	uncultured_Caudovirales_phage	1.0e-160	73.5
AYU03527.1\|1832646_1833210_-	bacteriophage protein	A0A0M4R331	Salmonella_phage	1.7e-79	75.7
AYU03528.1\|1833184_1833574_-	bacteriophage protein	A0A0M3ULK0	Salmonella_phage	2.5e-66	96.1
AYU03529.1\|1833560_1834115_-	bacteriophage protein	A0A0M4S631	Salmonella_phage	8.0e-66	71.7
AYU03530.1\|1834111_1834519_-	bacteriophage protein	A0A0M5M3S2	Salmonella_phage	9.7e-69	94.8
AYU03531.1\|1834893_1835835_-	bacteriophage protein	A0A0M3ULD3	Salmonella_phage	3.2e-155	86.9
AYU03532.1\|1835846_1836353_-	bacteriophage protein	A0A0M4QWZ6	Salmonella_phage	3.7e-70	79.9
AYU03533.1\|1836356_1837577_-	hypothetical protein	A0A0M4R5A6	Salmonella_phage	1.2e-199	88.0
AYU03534.1\|1837591_1838122_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	1.7e-81	84.0
AYU03535.1\|1838216_1839683_-	hypothetical protein	A0A0M4S6U1	Salmonella_phage	1.8e-261	92.4
AYU03536.1\|1839682_1841086_-	bacteriophage protein	A0A077KAW0	Edwardsiella_phage	3.2e-188	69.2
AYU03537.1\|1841855_1842035_+	hypothetical protein	NA	NA	NA	NA
AYU03538.1\|1842024_1842369_-	hypothetical protein	Q8SBD8	Shigella_phage	1.4e-36	74.5
AYU03539.1\|1842563_1843040_-	endolysin	Q8SBE0	Shigella_phage	1.0e-85	96.2
AYU03540.1\|1843043_1843385_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	4.0e-52	89.2
AYU03541.1\|1843732_1844302_-	hypothetical protein	NA	NA	NA	NA
AYU03542.1\|1844535_1845225_-	bacteriophage protein	A0A0N7C203	Escherichia_phage	2.1e-52	77.9
AYU03543.1\|1845365_1845920_-	hypothetical protein	A0A0U2S606	Escherichia_phage	1.3e-71	71.0
AYU03544.1\|1845916_1846207_-	bacteriophage protein	A0A0U2KD41	Escherichia_phage	3.3e-47	89.6
AYU03545.1\|1846206_1846806_-	hypothetical protein	A0A0U2RT94	Escherichia_phage	5.9e-107	93.0
AYU03546.1\|1846877_1847090_-	hypothetical protein	NA	NA	NA	NA
AYU03547.1\|1847367_1847580_-	Hok/Gef family protein	A0A0P0ZAX5	Stx2-converting_phage	9.6e-28	95.7
AYU03548.1\|1847948_1848881_+	hypothetical protein	NA	NA	NA	NA
AYU03549.1\|1848877_1849432_+	hypothetical protein	NA	NA	NA	NA
AYU03550.1\|1849530_1849938_-	bacteriophage protein	A0A2R2Z307	Escherichia_phage	1.7e-57	95.8
AYU03551.1\|1849944_1850367_-	hypothetical protein	A0A0U2QQN3	Escherichia_phage	1.7e-63	91.3
AYU03552.1\|1850382_1851177_-	hypothetical protein	A0A0U2SAW4	Escherichia_phage	1.3e-117	88.5
AYU03553.1\|1851166_1851913_-	DNA replication protein	V5UQI5	Shigella_phage	2.0e-112	79.3
AYU03554.1\|1851919_1852708_-	hypothetical protein	G9L6A8	Escherichia_phage	3.9e-42	65.0
1852665:1852678	attL	NA	NA	NA	NA
AYU03555.1\|1852785_1853208_-	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	3.4e-69	94.3
AYU03556.1\|1853204_1853447_-	cro repressor	K7PKH4	Enterobacteria_phage	2.3e-17	62.1
AYU03557.1\|1853543_1853963_+	regulator	K7PH71	Enterobacterial_phage	3.1e-14	60.6
AYU03558.1\|1854205_1854424_+	hypothetical protein	M4QQ57	Salicola_phage	2.5e-07	53.2
AYU03559.1\|1854577_1854790_-	hypothetical protein	NA	NA	NA	NA
AYU03560.1\|1855296_1855518_+	cell division inhibitor protein	A0A0U2RTC4	Escherichia_phage	6.9e-37	97.3
AYU03561.1\|1855762_1856038_+	bacteriophage protein	A0A0U2QW85	Escherichia_phage	3.7e-40	92.3
AYU03562.1\|1856137_1859266_+	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	0.0e+00	79.5
AYU03563.1\|1859262_1860330_+	hypothetical protein	A0A0U2S5Y9	Escherichia_phage	1.8e-114	62.5
AYU03564.1\|1860508_1860769_+	gydaC	A0A0U2QL97	Escherichia_phage	1.7e-18	97.9
AYU03565.1\|1861122_1862199_+\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	6.9e-98	51.7
1867724:1867737	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2057547 : 2068054

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU03752.1\|2057547_2058861_-	dehydratase RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
AYU03753.1\|2058887_2059967_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.1
AYU03754.1\|2059971_2060745_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AYU03755.1\|2060760_2061735_-	reductase RfbI	NA	NA	NA	NA
AYU03756.1\|2061740_2062292_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.7e-53	58.6
AYU03757.1\|2062292_2063171_-	TDP-glucose pyrophosphorylase	I7I009	Enterobacteria_phage	2.3e-107	64.8
AYU03758.1\|2063218_2064118_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.9e-31	36.3
AYU03759.1\|2064117_2065203_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
AYU03760.1\|2065579_2066473_-	UTP-glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AYU03761.1\|2066650_2068054_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.1e-21	26.5

DBSCAN-SWA_7

2143946 : 2153117

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU03818.1\|2143946_2145980_+\|tRNA	methionyl-tRNA synthetase	A0A1V0SDF2	Indivirus	6.1e-55	26.9
AYU03819.1\|2146220_2146679_+	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AYU03820.1\|2146850_2147381_+	lipoprotein	NA	NA	NA	NA
AYU03821.1\|2147437_2147905_-	hypothetical protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AYU03822.1\|2147951_2148671_-	two-component system response regulator	NA	NA	NA	NA
AYU03823.1\|2148667_2150353_-	two-component system sensor kinase	Q9EYF3	Enterobacteria_phage	1.1e-278	91.1
AYU03824.1\|2150575_2151307_+	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AYU03825.1\|2151366_2151474_+	hypothetical protein	NA	NA	NA	NA
AYU03826.1\|2151454_2152186_-	ABC transporter permease	NA	NA	NA	NA
AYU03827.1\|2152169_2153117_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2

DBSCAN-SWA_8

2688560 : 2701952

Salmonella_phage(70.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU04257.1\|2688560_2688779_-	hypothetical protein	Q53ZE7	Salmonella_virus	1.9e-18	71.9
AYU04258.1\|2688869_2689970_-	hypothetical protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
AYU04259.1\|2689966_2690452_-\|tail	bacteriophage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
AYU04260.1\|2690448_2693526_-\|tail	bacteriophage tail protein	E5G6Q1	Salmonella_phage	0.0e+00	63.1
AYU04261.1\|2693518_2693638_-	hypothetical protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
AYU04262.1\|2693652_2693955_-\|tail	phage tail protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
AYU04263.1\|2694009_2694525_-\|tail	major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
AYU04264.1\|2694534_2695707_-\|tail	bacteriophage major tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
AYU04265.1\|2695849_2696422_-	DNA-invertase	A0A0F7LA37	Escherichia_phage	1.4e-86	86.3
AYU04266.1\|2697099_2698215_+	glycosyltransferase	NA	NA	NA	NA
AYU04267.1\|2698295_2701952_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	1.0e-44	28.6

DBSCAN-SWA_9

3018644 : 3062347

Bacillus_virus(33.33%)

protease,tRNA,transposase,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU04554.1\|3018644_3019103_-\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYU04555.1\|3019292_3020372_-	fructose 1,6-bisphosphate aldolase	NA	NA	NA	NA
AYU04556.1\|3020473_3021637_-	phosphoglycerate kinase	NA	NA	NA	NA
AYU04557.1\|3021658_3022705_-	D-erythrose 4-phosphate dehydrogenase	NA	NA	NA	NA
AYU04558.1\|3023078_3023504_+	hypothetical protein	NA	NA	NA	NA
AYU04559.1\|3023529_3024108_+	hypothetical protein	NA	NA	NA	NA
AYU04560.1\|3024141_3024816_+	hypothetical protein	NA	NA	NA	NA
AYU04561.1\|3024797_3025481_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
AYU04562.1\|3025474_3026131_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.6e-09	28.6
AYU04563.1\|3026235_3026694_-\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYU04564.1\|3026882_3028874_-	transketolase	NA	NA	NA	NA
AYU04565.1\|3029149_3029908_+\|protease	metalloprotease	NA	NA	NA	NA
AYU04566.1\|3030008_3030929_-	agmatine ureohydrolase	NA	NA	NA	NA
AYU04567.1\|3031156_3033133_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
AYU04568.1\|3033141_3033273_-	hypothetical protein	NA	NA	NA	NA
AYU04569.1\|3033567_3033867_-	membrane protein	NA	NA	NA	NA
AYU04570.1\|3033922_3035077_+	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	1.5e-130	63.9
AYU04571.1\|3035569_3036964_+	galactose-proton symport	NA	NA	NA	NA
AYU04572.1\|3037042_3037540_+	hypothetical protein	NA	NA	NA	NA
AYU04573.1\|3037635_3038343_+	endonuclease I	NA	NA	NA	NA
AYU04574.1\|3038419_3039151_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
AYU04575.1\|3039170_3040118_+	glutathione synthetase	NA	NA	NA	NA
AYU04576.1\|3040333_3040897_+	hypothetical protein	NA	NA	NA	NA
AYU04577.1\|3040896_3041313_+	Holliday junction resolvase	NA	NA	NA	NA
AYU04578.1\|3041359_3042046_-	global regulatory protein	NA	NA	NA	NA
AYU04579.1\|3042175_3043156_-	type II secretion system ATP-binding protein	NA	NA	NA	NA
AYU04580.1\|3043173_3043878_+	hypothetical protein	NA	NA	NA	NA
AYU04581.1\|3043896_3044463_+	hypothetical protein	NA	NA	NA	NA
AYU04582.1\|3044459_3044750_+	hypothetical protein	NA	NA	NA	NA
AYU04583.1\|3044757_3045351_+	dITP/XTP pyrophosphatase	NA	NA	NA	NA
AYU04584.1\|3045343_3046480_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
AYU04585.1\|3046570_3047578_-	hypothetical protein	NA	NA	NA	NA
AYU04586.1\|3047710_3048757_-	L-asparaginase	NA	NA	NA	NA
AYU04587.1\|3049075_3049534_+\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYU04588.1\|3049656_3050376_-	hypothetical protein	NA	NA	NA	NA
AYU04589.1\|3050425_3050752_-	hypothetical protein	NA	NA	NA	NA
AYU04590.1\|3050751_3051471_-\|tRNA	tRNA m(7)G46 methyltransferase	NA	NA	NA	NA
AYU04591.1\|3051625_3052678_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
AYU04592.1\|3052705_3052981_+	oxidative damage protection protein	NA	NA	NA	NA
AYU04593.1\|3053093_3054179_+	membrane-bound lytic murein transglycosylase C	A0A0H3V0Q1	Geobacillus_virus	5.8e-12	39.0
AYU04594.1\|3054395_3055652_+	nucleoside permease	NA	NA	NA	NA
AYU04595.1\|3058262_3058970_+	hypothetical protein	NA	NA	NA	NA
AYU04596.1\|3061559_3061826_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AYU04597.1\|3062068_3062347_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

DBSCAN-SWA_10

3439802 : 3477860

Salmonella_phage(82.05%)

tail,integrase,plate,capsid,transposase,portal,terminase

attL 3434766:3434780|attR 3446932:3446946

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3434766:3434780	attL	NA	NA	NA	NA
AYU04926.1\|3439802_3441449_-	acetolactate synthase large subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	9.0e-65	31.5
AYU04927.1\|3441588_3441687_-	ilvGMEDA operon attenuator peptide	NA	NA	NA	NA
AYU04928.1\|3441942_3442272_+	hypothetical protein	NA	NA	NA	NA
AYU04929.1\|3442312_3443365_-\|integrase	bacteriophage integrase	A0A218M4I3	Erwinia_phage	3.6e-107	57.3
AYU04930.1\|3443760_3444330_-	repressor protein	A0A1S6KZZ7	Salmonella_phage	2.5e-38	43.4
AYU04931.1\|3444455_3444677_+	hypothetical protein	NA	NA	NA	NA
AYU04932.1\|3444709_3445219_+	regulatory protein cII	E5G6L3	Salmonella_phage	5.8e-87	98.8
AYU04933.1\|3445393_3445618_+	hypothetical protein	NA	NA	NA	NA
AYU04934.1\|3445640_3445982_+	hypothetical protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
AYU04935.1\|3446049_3446283_+	hypothetical protein	E5G6L6	Salmonella_phage	2.0e-31	94.8
AYU04936.1\|3446282_3446510_+	hypothetical protein	E5G6L7	Salmonella_phage	2.7e-36	100.0
AYU04937.1\|3446506_3447364_+	DNA adenine methylase	E5G6L8	Salmonella_phage	3.5e-161	97.2
3446932:3446946	attR	NA	NA	NA	NA
AYU04938.1\|3447360_3449775_+	endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
AYU04939.1\|3449928_3450117_+	hypothetical protein	E5G6M0	Salmonella_phage	7.9e-26	95.2
AYU04940.1\|3452084_3452999_+	hypothetical protein	NA	NA	NA	NA
AYU04941.1\|3452995_3453736_+	hypothetical protein	NA	NA	NA	NA
AYU04942.1\|3453770_3454808_-\|capsid,portal	capsid portal protein	A0A1S6KZW5	Salmonella_phage	1.3e-173	89.5
AYU04943.1\|3454807_3456574_-\|terminase	terminase subunit	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
AYU04944.1\|3456716_3457550_+\|capsid	capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.5e-121	90.6
AYU04945.1\|3457566_3458625_+\|capsid	major capsid protein	E5G6M6	Salmonella_phage	1.4e-180	93.1
AYU04946.1\|3458628_3459279_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
AYU04947.1\|3459311_3459839_+\|capsid	capsid completion protein	A0A1S6KZW8	Salmonella_phage	2.1e-76	89.0
AYU04948.1\|3459838_3460042_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.4e-31	92.5
AYU04949.1\|3460045_3460261_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
AYU04950.1\|3460280_3460754_+	lysozyme	E5G6N1	Salmonella_phage	3.7e-80	91.0
AYU04951.1\|3460755_3461133_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.3e-16	40.0
AYU04952.1\|3461129_3461558_+	regulatory protein	E5G6N2	Salmonella_phage	2.2e-47	77.3
AYU04953.1\|3461653_3462085_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.5e-72	95.1
AYU04954.1\|3462077_3462524_+\|tail	phage tail completion protein	A0A1S6L001	Salmonella_phage	6.6e-63	85.6
AYU04955.1\|3462592_3463171_+\|plate	phage baseplate assembly protein	A0A1S6KZX7	Salmonella_phage	5.5e-94	86.5
AYU04956.1\|3463167_3463527_+\|plate	phage baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	6.1e-51	84.9
AYU04957.1\|3463513_3464422_+\|plate	phage baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	1.3e-142	89.7
AYU04958.1\|3464414_3465020_+\|tail	phage tail protein	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
AYU04959.1\|3465016_3466531_+\|tail	variable tail fiber protein	M1TAS6	Escherichia_phage	6.8e-200	73.2
AYU04960.1\|3466530_3467124_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	9.2e-60	64.3
AYU04961.1\|3467095_3467536_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	3.1e-52	68.0
AYU04962.1\|3467958_3468531_+	DNA-invertase	A0A0F7LA37	Escherichia_phage	1.4e-86	86.3
AYU04963.1\|3468673_3469846_+\|tail	major tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
AYU04964.1\|3469855_3470371_+\|tail	major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
AYU04965.1\|3470425_3470728_+\|tail	phage tail protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
AYU04966.1\|3470742_3470862_+	bacteriophage protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
AYU04967.1\|3470854_3473932_+\|tail	bacteriophage tail protein	E5G6Q1	Salmonella_phage	0.0e+00	63.1
AYU04968.1\|3473928_3474414_+\|tail	bacteriophage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
AYU04969.1\|3474410_3475511_+	hypothetical protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
AYU04970.1\|3475601_3475820_+	hypothetical protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
AYU04971.1\|3477401_3477860_+\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA

DBSCAN-SWA_11

4393318 : 4467495

Salmonella_phage(82.61%)

tail,integrase,plate,capsid,portal,terminase

attL 4454832:4454848|attR 4467654:4467670

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU05744.1\|4393318_4395268_+	hypothetical protein	A0A2K9V411	Faecalibacterium_phage	5.9e-31	38.3
AYU05745.1\|4395339_4396248_+	hypothetical protein	NA	NA	NA	NA
AYU05746.1\|4396321_4397221_+	hypothetical protein	NA	NA	NA	NA
AYU05747.1\|4397262_4397622_+	hypothetical protein	NA	NA	NA	NA
AYU05748.1\|4397721_4397991_-	hypothetical protein	NA	NA	NA	NA
AYU05749.1\|4398122_4399397_-	UV protection protein	F1C5A5	Cronobacter_phage	7.5e-152	62.0
AYU05750.1\|4399616_4399994_+	hypothetical protein	NA	NA	NA	NA
AYU05751.1\|4400080_4400299_-	hypothetical protein	E5G6Q4	Salmonella_phage	4.9e-27	75.0
AYU05752.1\|4400366_4401467_-	hypothetical protein	E5G6Q3	Salmonella_phage	7.9e-190	92.1
AYU05753.1\|4401463_4401949_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	9.4e-71	93.2
AYU05754.1\|4401948_4404729_-	hypothetical protein	A0A2H4JGB2	uncultured_Caudovirales_phage	3.5e-125	41.1
AYU05755.1\|4404721_4404841_-	hypothetical protein	E5G6Q0	Salmonella_phage	1.2e-14	94.9
AYU05756.1\|4404855_4405158_-\|tail	phage tail protein	E5G6P9	Salmonella_phage	3.3e-42	93.9
AYU05757.1\|4405212_4405728_-\|tail	major tail tube protein	E5G6P8	Salmonella_phage	2.7e-92	99.4
AYU05758.1\|4405737_4406910_-\|tail	major tail sheath protein	A0A1S6KZY7	Salmonella_phage	9.8e-223	99.5
AYU05759.1\|4407444_4408167_+	invasion-associated secreted protein	NA	NA	NA	NA
AYU05760.1\|4408364_4408772_-\|tail	phage tail fiber protein	A0A1B0V844	Salmonella_phage	3.4e-58	83.5
AYU05761.1\|4408778_4410398_-\|tail	phage tail fiber protein	E5G6P0	Salmonella_phage	2.7e-154	90.9
AYU05762.1\|4410394_4411000_-\|tail	phage tail protein	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
AYU05763.1\|4410992_4411901_-\|plate	phage baseplate assembly protein	E5G6N8	Salmonella_phage	5.2e-155	97.0
AYU05764.1\|4411887_4412247_-\|plate	phage baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	6.8e-58	96.6
AYU05765.1\|4412243_4412822_-\|plate	phage baseplate assembly protein	E5G6N6	Salmonella_phage	3.9e-108	99.5
AYU05766.1\|4412890_4413337_-\|tail	phage tail protein	A0A1S6L001	Salmonella_phage	2.2e-66	90.4
AYU05767.1\|4413329_4413761_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.1e-75	99.3
AYU05768.1\|4413856_4414282_-	regulatory protein	A0A1S6KZX8	Salmonella_phage	2.5e-67	97.9
AYU05769.1\|4414281_4414659_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.5e-60	99.2
AYU05770.1\|4414663_4415134_-	lysozyme	A0A1S6KZY9	Salmonella_phage	1.0e-85	97.4
AYU05771.1\|4415153_4415369_-	hypothetical protein	E5G6N0	Salmonella_phage	3.8e-32	98.6
AYU05772.1\|4415372_4415576_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	3.8e-34	100.0
AYU05773.1\|4415575_4416040_-\|capsid	capsid completion protein	A0A1S6KZW8	Salmonella_phage	7.1e-84	97.4
AYU05774.1\|4416133_4416784_-\|terminase	phage terminase	E5G6M7	Salmonella_phage	2.4e-114	99.5
AYU05775.1\|4416787_4417852_-\|capsid	major capsid protein	A0A1S6KZZ3	Salmonella_phage	1.3e-194	98.3
AYU05776.1\|4417868_4418702_-\|capsid	capsid scaffolding protein	E5G6M5	Salmonella_phage	6.1e-126	87.4
AYU05777.1\|4418844_4420611_+\|terminase	terminase subunit	A0A1S6KZW3	Salmonella_phage	0.0e+00	96.4
AYU05778.1\|4420607_4421654_+\|capsid,portal	capsid portal protein	A0A1S6KZW5	Salmonella_phage	2.1e-176	86.6
AYU05779.1\|4421702_4422398_-	hypothetical protein	NA	NA	NA	NA
AYU05780.1\|4422417_4423482_-	hypothetical protein	NA	NA	NA	NA
AYU05781.1\|4423478_4424543_-	hypothetical protein	NA	NA	NA	NA
AYU05782.1\|4425467_4427876_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	95.1
AYU05783.1\|4427866_4428727_-	DNA adenine methylase	E5G6L8	Salmonella_phage	3.4e-132	81.8
AYU05784.1\|4428723_4429308_-	exonuclease	A0A1S6L012	Salmonella_phage	1.1e-76	73.7
AYU05785.1\|4429304_4429532_-	hypothetical protein	A0A1S6L007	Salmonella_phage	1.0e-35	94.7
AYU05786.1\|4429531_4429765_-	hypothetical protein	A0A1S6L021	Salmonella_phage	9.8e-26	84.4
AYU05787.1\|4429832_4430174_-	hypothetical protein	A0A1S6L019	Salmonella_phage	4.6e-56	99.1
AYU05788.1\|4430137_4430338_-	hypothetical protein	A0A1S6L005	Salmonella_phage	4.6e-32	97.0
AYU05789.1\|4430345_4430855_-	phage regulatory protein	A0A1S6L008	Salmonella_phage	1.3e-83	94.1
AYU05790.1\|4430887_4431130_-	phage regulatory protein	A0A1S6KZZ6	Salmonella_phage	2.3e-38	98.8
AYU05791.1\|4431246_4431879_+	phage repressor protein cI	A0A1S6KZZ7	Salmonella_phage	1.4e-66	58.6
AYU05792.1\|4431882_4432908_+\|integrase	phage integrase	A0A1S6L016	Salmonella_phage	2.7e-200	98.2
AYU05793.1\|4433014_4433368_-	protein samA'	I6S1S3	Salmonella_phage	6.7e-10	59.3
AYU05794.1\|4433984_4434272_+	hypothetical protein	NA	NA	NA	NA
AYU05795.1\|4434282_4435173_+	methyltransferase	NA	NA	NA	NA
AYU05796.1\|4435172_4435919_+	hypothetical protein	NA	NA	NA	NA
AYU05797.1\|4436220_4438191_-	Vi polysaccharide exporter protein	NA	NA	NA	NA
AYU05798.1\|4438210_4439515_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA
AYU05799.1\|4439537_4440233_-	Vi polysaccharide exporter ATP-binding protein	NA	NA	NA	NA
AYU05800.1\|4440258_4441053_-	Vi polysaccharide exporter inner-membrane protein	NA	NA	NA	NA
AYU05801.1\|4441062_4442130_-	Vi polysaccharide exporter protein	NA	NA	NA	NA
AYU05802.1\|4442174_4443911_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA
AYU05803.1\|4443910_4446406_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA
AYU05804.1\|4446429_4447476_-	Vi polysaccharide biosynthesis epimerase	A0A2K9L0I7	Tupanvirus	1.4e-74	45.0
AYU05805.1\|4447478_4448756_-	Vi polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase	M1HYW7	Paramecium_bursaria_Chlorella_virus	1.3e-21	26.7
AYU05806.1\|4449000_4449540_-	Vi polysaccharide biosynthesis protein	NA	NA	NA	NA
AYU05807.1\|4450393_4451905_+	DNA helicase	A0A126DN25	Acinetobacter_phage	2.0e-42	29.0
AYU05808.1\|4451888_4453478_+	hypothetical protein	NA	NA	NA	NA
AYU05809.1\|4453641_4454655_+\|integrase	phage integrase	NA	NA	NA	NA
4454832:4454848	attL	NA	NA	NA	NA
AYU05810.1\|4455081_4455375_+	hypothetical protein	NA	NA	NA	NA
AYU05811.1\|4455371_4455860_+	hypothetical protein	NA	NA	NA	NA
AYU05812.1\|4456039_4456492_-	hypothetical protein	NA	NA	NA	NA
AYU05813.1\|4461714_4462176_+	hypothetical protein	NA	NA	NA	NA
AYU05814.1\|4462172_4462394_+	transcriptional regulator	A0A2I7S995	Vibrio_phage	4.6e-17	58.3
AYU05815.1\|4463250_4464033_+	hypothetical protein	NA	NA	NA	NA
AYU05816.1\|4464659_4464884_-	hypothetical protein	NA	NA	NA	NA
AYU05817.1\|4465013_4465925_-	hypothetical protein	NA	NA	NA	NA
AYU05818.1\|4466235_4467495_-\|integrase	bacteriophage integrase	B7SYF8	Stenotrophomonas_phage	3.2e-78	41.7
4467654:4467670	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4504472 : 4594058

Enterobacteria_phage(87.5%)

tail,tRNA,integrase,protease,plate,head,transposase,portal

attL 4539912:4539928|attR 4592670:4592686

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU05854.1\|4504472_4505423_+\|tRNA	tRNA delta-2-isopentenylpyrophosphate (IPP) transferase	NA	NA	NA	NA
AYU05855.1\|4505505_4505814_+	RNA-binding protein Hfq	NA	NA	NA	NA
AYU05856.1\|4505885_4507166_+	GTPase HflX	NA	NA	NA	NA
AYU05857.1\|4507380_4508640_+\|protease	FtsH protease regulator HflK	NA	NA	NA	NA
AYU05858.1\|4508642_4509647_+\|protease	FtsH protease regulator HflC	NA	NA	NA	NA
AYU05859.1\|4509725_4509923_+	hypothetical protein	NA	NA	NA	NA
AYU05860.1\|4510025_4511324_+	adenylosuccinate synthetase	W5S5V7	Pithovirus	4.9e-66	35.6
AYU05861.1\|4511543_4511969_+	transcriptional repressor NsrR	NA	NA	NA	NA
AYU05862.1\|4512006_4514445_+	ribonuclease R	Q0GXV6	Lactococcus_phage	9.9e-68	33.1
AYU05863.1\|4514535_4515267_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
AYU05864.1\|4515398_4515803_+	hypothetical protein	NA	NA	NA	NA
AYU05865.1\|4516739_4517423_+	hypothetical protein	NA	NA	NA	NA
AYU05866.1\|4517440_4517839_+	hypothetical protein	NA	NA	NA	NA
AYU05867.1\|4517848_4518487_+	hypothetical protein	NA	NA	NA	NA
AYU05868.1\|4518489_4519653_+	ATP-Grasp family ATPase	B2ZXR7	Ralstonia_phage	1.5e-82	43.8
AYU05869.1\|4519737_4521360_+	acyl Co-A dehydrogenase	NA	NA	NA	NA
AYU05870.1\|4521404_4521728_-	hypothetical protein	NA	NA	NA	NA
AYU05871.1\|4521810_4522140_-	biofilm stress and motility protein A	NA	NA	NA	NA
AYU05872.1\|4522323_4523073_+	esterase	NA	NA	NA	NA
AYU05873.1\|4523069_4523825_-	transcriptional regulator	NA	NA	NA	NA
AYU05874.1\|4523929_4524994_-	L-ascorbate 6-phosphate lactonase	NA	NA	NA	NA
AYU05875.1\|4525323_4526754_+	transport protein SgaT	NA	NA	NA	NA
AYU05876.1\|4526769_4527075_+	PTS system transporter subunit IIB	NA	NA	NA	NA
AYU05877.1\|4527084_4527549_+	sugar phosphotransferase	NA	NA	NA	NA
AYU05878.1\|4527562_4528213_+	3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA	NA	NA	NA
AYU05879.1\|4528222_4529077_+	L-xylulose 5-phosphate 3-epimerase	NA	NA	NA	NA
AYU05880.1\|4529076_4529763_+	class II aldolase	NA	NA	NA	NA
AYU05881.1\|4529892_4530168_-	hypothetical protein	NA	NA	NA	NA
AYU05882.1\|4530638_4531034_+	30s ribosomal protein S6	NA	NA	NA	NA
AYU05883.1\|4531040_4531355_+	primosomal replication protein N	NA	NA	NA	NA
AYU05884.1\|4531359_4531587_+	30s ribosomal subunit protein S18	NA	NA	NA	NA
AYU05885.1\|4531628_4532078_+	50s ribosomal subunit protein L9	NA	NA	NA	NA
AYU05886.1\|4532225_4533152_+	hypothetical protein	NA	NA	NA	NA
AYU05887.1\|4533201_4533837_-	hypothetical protein	NA	NA	NA	NA
AYU05888.1\|4534014_4534677_+	FkbP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
AYU05889.1\|4534972_4536376_+	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA
AYU05890.1\|4536713_4537853_+	hypothetical protein	NA	NA	NA	NA
AYU05891.1\|4537867_4539256_+	hypothetical protein	NA	NA	NA	NA
AYU05892.1\|4539322_4539985_-	iron-sulfur cluster repair di-iron protein	NA	NA	NA	NA
4539912:4539928	attL	NA	NA	NA	NA
AYU05893.1\|4540087_4541053_-	hypothetical protein	NA	NA	NA	NA
AYU05894.1\|4541133_4541982_-	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
AYU05895.1\|4542069_4542456_+	transcriptional regulator	NA	NA	NA	NA
AYU05896.1\|4542513_4544457_-	2',3'-cyclic-nucleotide 2'-phosphodiesterase	NA	NA	NA	NA
AYU05897.1\|4544723_4545464_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
AYU05898.1\|4545453_4546011_-	transcriptional regulator	NA	NA	NA	NA
AYU05899.1\|4546337_4546544_+	hypothetical protein	NA	NA	NA	NA
AYU05900.1\|4546686_4547145_-\|transposase	insertion sequence element IS200 transposase	NA	NA	NA	NA
AYU05901.1\|4547342_4548686_-	hypothetical protein	NA	NA	NA	NA
AYU05902.1\|4548882_4549521_-	peptide methionine sulfoxide reductase	NA	NA	NA	NA
AYU05903.1\|4549733_4551467_+	hypothetical protein	NA	NA	NA	NA
AYU05904.1\|4551463_4555243_+	hypothetical protein	NA	NA	NA	NA
AYU05905.1\|4555245_4555590_+	hypothetical protein	NA	NA	NA	NA
AYU05906.1\|4556653_4556914_-	prophage late promoter activator protein	NA	NA	NA	NA
AYU05907.1\|4556956_4558066_-	phage protein D	A0A0A7NQ97	Enterobacteria_phage	6.3e-195	94.3
AYU05908.1\|4558223_4559408_+\|tail	Phage tail sheath protein FI	A0A0A7NV69	Enterobacteria_phage	1.5e-226	99.7
AYU05909.1\|4559407_4559920_+\|tail	major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	3.2e-93	100.0
AYU05910.1\|4559974_4560340_+	hypothetical protein	A0A0A7NPZ0	Enterobacteria_phage	3.8e-56	97.5
AYU05911.1\|4560490_4563298_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	98.0
AYU05912.1\|4563310_4563799_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	4.0e-85	98.1
AYU05913.1\|4564296_4565019_+	invasion-associated secreted protein	NA	NA	NA	NA
AYU05914.1\|4565226_4565634_-\|tail	phage tail fiber protein	A0A1B0V844	Salmonella_phage	3.4e-58	83.5
AYU05915.1\|4565640_4567974_-	hypothetical protein	A0A0A7NV63	Enterobacteria_phage	4.4e-150	76.8
AYU05916.1\|4567976_4568507_-\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	5.3e-91	96.9
AYU05917.1\|4568499_4569396_-\|plate	phage baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	2.5e-154	97.7
AYU05918.1\|4569399_4569750_-\|plate	Phage baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	9.2e-60	100.0
AYU05919.1\|4569746_4570328_-	hypothetical protein	A0A0A7NRZ3	Enterobacteria_phage	2.5e-102	97.9
AYU05920.1\|4570324_4570969_-	phage virion morphogenesis-like protein	A0A0A7NV60	Enterobacteria_phage	3.1e-114	99.5
AYU05921.1\|4570952_4571420_-\|tail	tail completion phage protein	A0A0A7NPU6	Enterobacteria_phage	1.0e-85	99.4
AYU05922.1\|4571557_4571965_-	hypothetical protein	A0A0A7NPY2	Enterobacteria_phage	6.1e-63	94.1
AYU05923.1\|4571961_4572354_-	peptidase M15	A0A0A7NQ86	Enterobacteria_phage	5.8e-71	100.0
AYU05924.1\|4572350_4572674_-	hypothetical protein	A0A0A7NRY9	Enterobacteria_phage	1.6e-50	99.1
AYU05925.1\|4572876_4573371_-\|head	phage head protein	A0A0A7NPU2	Enterobacteria_phage	1.2e-89	99.4
AYU05926.1\|4573472_4574273_-	hypothetical protein	A0A0A7NPX9	Enterobacteria_phage	1.4e-124	88.3
AYU05927.1\|4574318_4575371_-	hypothetical protein	A0A0A7NQ82	Enterobacteria_phage	1.3e-194	97.7
AYU05928.1\|4575394_4576231_-	hypothetical protein	A0A0A7NRY7	Enterobacteria_phage	2.7e-150	100.0
AYU05929.1\|4576385_4578137_+	oxidoreductase	A0A0A7NV54	Enterobacteria_phage	0.0e+00	99.7
AYU05930.1\|4578136_4579183_+\|portal	Presumed portal vertex protein	A0A0A7NPT9	Enterobacteria_phage	1.5e-206	100.0
AYU05931.1\|4579889_4580393_+	hypothetical protein	NA	NA	NA	NA
AYU05932.1\|4580483_4580795_-	hypothetical protein	A0A0A7NPT5	Enterobacteria_phage	1.9e-48	94.2
AYU05933.1\|4580799_4581759_-	plasmid partition protein	A0A0A7NPX4	Enterobacteria_phage	4.6e-178	98.4
AYU05934.1\|4581835_4584658_-	phage DNA replication protein	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	96.5
AYU05935.1\|4584664_4585030_-	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	6.6e-61	96.7
AYU05936.1\|4585102_4585333_-	hypothetical protein	A0A0A7NV48	Enterobacteria_phage	3.7e-17	67.1
AYU05937.1\|4585869_4586355_+	hypothetical protein	NA	NA	NA	NA
AYU05938.1\|4586394_4586709_-	hypothetical protein	A0A0A7NRX6	Enterobacteria_phage	5.2e-38	86.7
AYU05939.1\|4586705_4586951_-	winged helix-turn-helix domain-containing protein	A0A0A7NV47	Enterobacteria_phage	6.9e-38	93.8
AYU05940.1\|4587173_4587584_-	hypothetical protein	NA	NA	NA	NA
AYU05941.1\|4587786_4588029_-	hypothetical protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
AYU05942.1\|4588040_4588298_-	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	4.9e-18	76.3
AYU05943.1\|4588330_4588681_-	DUF4761 domain-containing protein	A0A0A7NV42	Enterobacteria_phage	1.1e-57	95.7
AYU05944.1\|4588718_4589144_-	phage regulatory protein	A0A0A7NPS5	Enterobacteria_phage	9.1e-78	100.0
AYU05945.1\|4589252_4589552_+	transcriptional regulator, y4mF family	A0A0A7NPW3	Enterobacteria_phage	1.2e-44	100.0
AYU05946.1\|4589591_4590614_+\|integrase	integrase	A0A0A7NQ69	Enterobacteria_phage	5.4e-193	99.7
AYU05947.1\|4590749_4591958_-	sugar transporter	NA	NA	NA	NA
AYU05948.1\|4591954_4593118_-	metallo-dependent hydrolase	NA	NA	NA	NA
4592670:4592686	attR	NA	NA	NA	NA
AYU05949.1\|4593527_4594058_-	inorganic pyrophosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	4.2e-56	63.3

DBSCAN-SWA_13

4644857 : 4651333