CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033460	Staphylococcus sp. SDB 2975 chromosome, complete genome	5 crisprs	csa3,WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm5gr7,csm6,cas6,cas14j,cas3,DEDDh,DinG	1	5	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP033460_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033460_1

719418-719667

TypeIII

Consensus_repeat	Method
TAATCGACGAGTACCCCGAGCATTAGGGGACGAGAAC	PILER-CR
TAATCGACGAGTACCCCGAGCATTAGGGGACGAGAAC	CRISPRCasFinder

3 spacers

cas1,cas2,cas10,csm2gr11,csm3gr7,csm5gr7,csm6,cas6

The CRISPR arrays of CP033460_1

>merge|CP033460|1|719418-719667|PILER-CR,CRISPRCasFinder
TAATCGACGAGTACCCCGAGCATTAGGGGACGAGAACCGCTTGCGGTAGAAATGAATTTCTGCATGTCCTAATCGACGAGTACCCCGAGCATTAGGGGACGAGAACTGTTGCTATCGTCGATATTGTACTTAATTTGTTCCAATCGATGAGTACCCCGAGTATTAGGGGAGGAGAACTTTTATTTCCTCTTTGATTTCTGAAATTCTGTTTAATAATAGACGAGTACCCCGAGTATTAGGGGACGAGAAT

>CP033460|1|1|719418-719667|PILER-CR
TAATCGACGAGTACCCCGAGCATTAGGGGACGAGAAC	CGCTTGCGGTAGAAATGAATTTCTGCATGTCC
TAATCGACGAGTACCCCGAGCATTAGGGGACGAGAAC	TGTTGCTATCGTCGATATTGTACTTAATTTGTTC
CAATCGATGAGTACCCCGAGTATTAGGGGAGGAGAAC	TTTTATTTCCTCTTTGATTTCTGAAATTCTGTTTAA
TAATAGACGAGTACCCCGAGTATTAGGGGACGAGAAT

>CP033460|1|1|719418-719667|CRISPRCasFinder
TAATCGACGAGTACCCCGAGCATTAGGGGACGAGAAC	CGCTTGCGGTAGAAATGAATTTCTGCATGTCC
TAATCGACGAGTACCCCGAGCATTAGGGGACGAGAAC	TGTTGCTATCGTCGATATTGTACTTAATTTGTTC
CAATCGATGAGTACCCCGAGTATTAGGGGAGGAGAAC	TTTTATTTCCTCTTTGATTTCTGAAATTCTGTTTAA
TAATAGACGAGTACCCCGAGTATTAGGGGACGAGAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP033460.1\|AYU54488.1\|729273_730119_+\|serine-protease	unknown	unknown	gnl\|CDD\|379142
CP033460.1\|AYU54479.1\|717171_718299_-\|glycine-oxidase-ThiO	unknown	unknown	gnl\|CDD\|274092
CP033460.1\|AYU54478.1\|716987_717188_-\|sulfur-carrier-protein-ThiS	unknown	unknown	gnl\|CDD\|273754
CP033460.1\|AYU56346.1\|718301_718874_-\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|238317
CP033460.1\|AYU54487.1\|727825_728527_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
CP033460.1\|AYU54483.1\|723403_723826_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	gnl\|CDD\|273844
CP033460.1\|AYU54476.1\|715166_716222_-\|thiamine/molybdopterin-biosynthesis-protein	unknown	unknown	gnl\|CDD\|181084
CP033460.1\|AYU54474.1\|713971_714424_-\|transcriptional-regulator-protein	unknown	unknown	gnl\|CDD\|224355
CP033460.1\|AYU54475.1\|714721_714943_+\|hypothetical-protein	unknown	unknown	unknown
CP033460.1\|AYU54486.1\|726533_727799_+\|type-III-A-CRISPR-associated-protein-Csm6	csm6	cd09699_csm6_CAS-III-A	gnl\|CDD\|131720
CP033460.1\|AYU54482.1\|721127_723398_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
CP033460.1\|AYU54471.1\|709987_711223_+\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
CP033460.1\|AYU56347.1\|730343_730715_-\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|376751
CP033460.1\|AYU54477.1\|716218_716986_-\|thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
CP033460.1\|AYU54472.1\|711490_712921_+\|arginine-ornithine-antiporter	unknown	unknown	gnl\|CDD\|163522
CP033460.1\|AYU54480.1\|719843_720752_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
CP033460.1\|AYU54485.1\|725399_726509_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	COG1332_csm5gr7_CAS-III-A	gnl\|CDD\|187793
CP033460.1\|AYU54484.1\|723827_724472_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
CP033460.1\|AYU54473.1\|713250_713922_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
CP033460.1\|AYU54481.1\|720751_721054_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09638_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|273699

Protein	Function_ID	Function_description	E-value
CP033460.1\|AYU54479.1\|717171_718299_-\|glycine-oxidase-ThiO	gnl\|CDD\|274092	TIGR02352, Glycine_oxidase, glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	2.42783e-67
CP033460.1\|AYU54478.1\|716987_717188_-\|sulfur-carrier-protein-ThiS	gnl\|CDD\|273754	TIGR01683, thiamine_biosynthesis_protein_ThiS, thiamine biosynthesis protein ThiS. This model represents ThiS, a small, ubiquitin-like thiamine biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	1.33842e-17
CP033460.1\|AYU56346.1\|718301_718874_-\|thiamine-phosphate-synthase	gnl\|CDD\|238317	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.	3.56086e-27
CP033460.1\|AYU54487.1\|727825_728527_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	4.59445e-11
CP033460.1\|AYU54483.1\|723403_723826_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|273844	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2. These proteins are found adjacent to a characteristic short, palidromic repeat cluster termed CRISPR, a probable mobile DNA element. This model represents the C-terminal domain of a minor family of CRISPR-associated protein from the Mtube subtype of CRISPR/Cas locus. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2.	6.33537e-16
CP033460.1\|AYU54476.1\|715166_716222_-\|thiamine/molybdopterin-biosynthesis-protein	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	1.26778e-98
CP033460.1\|AYU54474.1\|713971_714424_-\|transcriptional-regulator-protein	gnl\|CDD\|224355	COG1438, ArgR, Arginine repressor [Transcription].	1.07064e-33
CP033460.1\|AYU54488.1\|729273_730119_+\|serine-protease	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	1.03022e-10
CP033460.1\|AYU54486.1\|726533_727799_+\|type-III-A-CRISPR-associated-protein-Csm6	gnl\|CDD\|131720	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6. Members of this family as found in CRISPR-associated (cas) gene regions in Streptococcus thermophilus CNRZ1066, Staphylococcus epidermidis RP62A, and Mycobacterium tuberculosis (strains CDC1551 and H37Rv), as part of Mtube-type CRISPR/Cas systems. CRISPR is a widespread form of direct repeat found in archaea and bacteria, with distinctive subtypes each of which has a characteristic sporadic distribution.	6.48256e-87
CP033460.1\|AYU54482.1\|721127_723398_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0
CP033460.1\|AYU54471.1\|709987_711223_+\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
CP033460.1\|AYU56347.1\|730343_730715_-\|aspartate-1-decarboxylase	gnl\|CDD\|376751	pfam02261, Asp_decarbox, Aspartate decarboxylase. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesized initially as a proenzyme which is then proteolytically cleaved to an alpha (C-terminal) and beta (N-terminal) subunit and a pyruvoyl group. This family contains both chains of aspartate decarboxylase.	8.6789e-67
CP033460.1\|AYU54477.1\|716218_716986_-\|thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	3.94334e-143
CP033460.1\|AYU54472.1\|711490_712921_+\|arginine-ornithine-antiporter	gnl\|CDD\|163522	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. [Transport and binding proteins, Amino acids, peptides and amines].	0
CP033460.1\|AYU54480.1\|719843_720752_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	1.50996e-84
CP033460.1\|AYU54485.1\|725399_726509_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	5.4388e-20
CP033460.1\|AYU54484.1\|723827_724472_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.34381e-93
CP033460.1\|AYU54473.1\|713250_713922_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.80778e-27
CP033460.1\|AYU54481.1\|720751_721054_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|273699	TIGR01573, cas2, CRISPR-associated endonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. CRISPR systems protect against invasive nucleic acid sequences, including phage. Cas2 proteins have been characterized as either endoribonuclease (for ssRNA) or endodeoxyribonuclease (for dsDNA), depending on the system to which the Cas2 belongs. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes usually are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead of by this model (TIGR01573).	9.93578e-20

>CP033460.1|AYU56346.1|718301_718874_-|thiamine-phosphate-synthase
MYIAITPYRTLTQDDLRHFLAIAPAIDHLIFRTPMQQADLKRFLERLLQAGFPKSKITVHSDMELLQKLDLRTIHFREHDERAFQFKAAHPQIMVSMSTHSSASAQAAEAHHLDYVLFGHLFSTKSKPGKAPRTQAEIAAVLRVGIPVVALGGINAETLGQVPSGFAGIAAISYFMENDLVTLCSAKEAE
>CP033460.1|AYU54479.1|717171_718299_-|glycine-oxidase-ThiO
MFDLAIVGAGVIGMSIARHLKDSGMRIALIDRDIEGQHASYKAGGMLGAQNEFKEDSPLFRLALKSRAKFDELSKTLQKETGIDIQYQQNGLIKIATEEEDVASLQQQYEFLHAHDKDVEDLSEHDLGELTHYLVKGAQAMMFVPHDHQINANHYTKALHAALQAEDAVERFDHTNVEEITRHGDHYHIAVEAEGKSSELQAEKVVVAAGAWAGFLTDKPEIKETVSGVKGEVVLVENEELDLKHTLFMTNGCYIVPKPPHRFLIGATSYFDDYSVGVSTEGKDWLLHEAIERVPELASSRELKHWSGVRPWTPGEQPIMDEADPNLWVITGHYRNGILLSPIIGELMAEWLKSGERPEELAPFAMRRESYEVHH
>CP033460.1|AYU54478.1|716987_717188_-|sulfur-carrier-protein-ThiS
MKCIINGDPFTFDSELSIQNVLESLELDPKRVIAEHNENLIQRDDFAKQIVREDDRLELLEFVGGG
>CP033460.1|AYU54477.1|716218_716986_-|thiazole-synthase
MLKIGPYEMESRLLLGTGKFDDEDIQTQAIEASGTNVLTFAVRRMNLYDKNLPNPLANVNLKDFVTFPNTAGAKTVDEAVRIAEIAKHAGVCDMIKVEIIGDDETLLPDPIATYEACKILLDRGYIVCPYIAEDVVLAKRLEELGVHAVMPLASPIGTGRGINNPLNLSYIVKNANVPIIVDAGIGSAKDAAEAMELGADAVLLNSAVSRAKDPVKMAEAMKLGIEAGRLSYEAGRIPVKYTAQASSPTEGLGFL
>CP033460.1|AYU54476.1|715166_716222_-|thiamine/molybdopterin-biosynthesis-protein
MMSHSGHTEESPSMNSASADRFSRQTRYAPFGVKGQKALESAHLLVMGAGALGSHLAEQLVRMGVGKLTIVDMDIVEISNLHRQALYDEADALEMRPKVYALADKLRQINSEVEIQPLYQEITPTNIERMLTDVAPDMLLDGMDHFAIRFLFNEVCHKLGLPWVYGAAVGGKGTVYAIDYTGPCLRCLMSEAPETAESCAINGVIPPVILQVVSYQIAEVMRYMAGTGFSGKLLTVEPFNMKQQSMDVSRMKNPDCPVCSGQAAYEMLGVAEPKRVEGSCGDTYVFRFKPQHFDNADLFPGHILKANPYVKLLDIGGRSATLFKDGRMNVHGIEDAETAEALYQHLLKAMK
>CP033460.1|AYU54475.1|714721_714943_+|hypothetical-protein
MIIFMEIMLLTVIALVMEHRMTRRGNMSKSQWFTRMLKIGVAVVLITIAISFFQNLDVVIAGFKDGYTSYLEF
>CP033460.1|AYU54474.1|713971_714424_-|transcriptional-regulator-protein
MEKEKRLELIKLLLKNNKISTVRELAEILEEQYNLIFSMTTVAKDLQELNVTKVPNGANQSYYVLPEKNSAKSYREAFKKYRQNSVNSVIVKDSYILIKTEPGFARTINYCIDQMQLPHVLGTVSGNDVIMVLLKSAEEAEYVKYLLLET
>CP033460.1|AYU54473.1|713250_713922_+|Crp/Fnr-family-transcriptional-regulator
MSRTTETFQSSIQELSKMLEVPSGLIVPHLSEIYVRNYEKGQVIYYQGSEADSIYLLIEGYVSRERLNENGDDYLMLNRGHTLFPISHLFEQEHYEESCTALTDALIVRVPKNLIEYLSKNNEDTFVKIFTLLRQEQQISINRNMALMGRNAEQKVINTLRILGETIGNDQGAYYEIDKVMTVTLLSALAGVSREKASHVVRGLSNNNLVLKNYQTWTISKSI
>CP033460.1|AYU54472.1|711490_712921_+|arginine-ornithine-antiporter
MSEQLEQNKLSKTALIGLVIGSMIGGGAFNILSDMGGNAGGLAIIIGWIITAIGMISLAFVFQNLTNKRPDLDGGIYSYARAGFGDFVGFSSAWGYWFAAFLGNVAYATLLMSAVGNFFPIFKGGNTLPSIIVASILLWGVHFLILRGVETAALINSIVTVAKLIPIFLAIVCMLVAFHFDTFMAGFAGMKGNIALPLNFSNIMEQVKSTMLITVWVFTGIEGAVVFSGRAKTKKDVGTATVIGLLLVLVIYFLLTVLAQGVIAQGHISQLDQPSMASLLAHIVGPWGSTVVNIGLIISVLGAWLGWTLLAGELPFVVAKDKMFPKWFAKQNVNGAPVNSLLITNILVQLFLISMLFTESAYQFAFSLASSAILIPYAFSAFYQLKYTIQEDRKAHVQLVIGIISSIYAIWLIYAAGVDYLLLTMLLYIPGLFVYHRVQKNNQRKFIKRDYILMGFIILFAIIGIIRLATGAVNVF
>CP033460.1|AYU54471.1|709987_711223_+|arginine-deiminase
MNEHPIKVNSEIGKLKTVLLKRPGKELENLVPEYLGELLFDDIPYLKVAQEEHDKFAQTLRDEGIEVVYLEDLAAEAIEDPEVRKQFIDDVLAESEETLLGHEDAVKALFEDLDNKELVEKVMAGVRKEEVETGHTHLVEYVDDSYPFYMNPMPNLYFTRDPQASIGNGMTVNRMYWPARRRESIFFTYILKHHPRFKDADVPVWLDRNSPYNIEGGDELVLSEEVVAVGISERTSAQAIEKLARQIFANPESKIKKIVAIEIANTRAFMHLDTVFTMIDYDKFTIHSAIEKKGDDMNIFTIEPSDDGKDIKITKTSNLKETLKDALGLDDITFIPTGDGDRIVGPREQWNDGSNTLTIRPGVVVTYDRNYVSNQLLRDNGIKVIEITGSELVRGRGGPRCMSQPLYREDI
>CP033460.1|AYU54480.1|719843_720752_+|type-II-CRISPR-associated-endonuclease-Cas1
MKDIIYVKRYFFVTVAKQTFKFVNIVDKEESYVPIEDVDMFIFDHPRSYFSNQLVETCVENDITILFCNRKHRPITSVTSNFGYQRRLKRLLLQMKVQKKTKDRIWRKIIISKIKNQSDCLRYTAKLDEEADFIEKIASRIEEGDKTNKEAIAAKRYFNNLYGKEFIRGRYDDAVNASLNYGYALIRAKIRKSLAAYGFEQSFGIHHRSTENPFNLSDDIIEVFRPFVDSYVYEFIYQKNIAEINSEHKEQLIGLLFENCVIDERISSLFDAIDIVIQSLIKCYESNSASYLKLPKMIEEGP
>CP033460.1|AYU54481.1|720751_721054_+|CRISPR-associated-endonuclease-Cas2
MMLLVCFDLPRHSKLEKKQAAKFRKRLIELGFSMKQFSLYERSIRNSSTKEKIVKIISKELPDSGSITMYSLPNKIHNEQITILGENAIKILEKPKLISF
>CP033460.1|AYU54482.1|721127_723398_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MSRKLDLQYGSLLHDIGKIIYRSNSNEFEKGTHSKMGWEYLKKFEEFNHTSIKESVRYHHYKELSQVKLNNNSLAYITYIADNIASGADRRDFIEEGDEGDYSNSFKFDKFVPLNSIFNILNSQSLGISNGSLPFAVSEQVKYPKTTEIVYTSGNYTTLKNDMDIDLRERLKFEPKHFSSLLQWTESLWSTIPSSTNLNQLVDVSLYDHSKVTCAVACCIYDYLESYNINNYKEELFSPYSKTKDFYDKPVFLLASLDMSGIQDFIFNISGSKALKSLRARSFYLEIILEVIVDQLLGKLELSRANLLYTGGGHAYLLLPNTNSTKEIIQDFDESLRKWFINMFSTDLSVAIAYQECTGNDLMNSNNQYRQIWQSVSQKLSDKKAHKYSAEDILRMNQTKSYGERECKECLRSDLELNEEGICPICDGIIKISNNLRDNDFFVVGDNGKLSLPFDLKLKVVNREEVEKLLNSHTDIKIYSKNKAFIGPEVTTNLWMCDYDLASTNEETKKEGISSYVEREIGIRRLGVVRADIDNLGAAFINGIPEKYNSLSRTATFSRNLSMFFKYELNNLLEGSKITVIYSGGDDIFLIGAWDDVISKTIEVRNAFEKFTLNKLTFSAGIGIYPSKYPVSKMASETGELEEAAKQGEKNQVALWNKHKVYKWNTLEKDILNDKLEIISGAFETTADHGKAFIYKIIELLREDSQINIARLAYLLARSNINSHYSNIIFKWSRSEEDREQLITAFEYYVYQTREG
>CP033460.1|AYU54483.1|723403_723826_+|type-III-A-CRISPR-associated-protein-Csm2
MELAKLKSGTPIDLKYAENVIKKNCETKTFKGKEQTVLFGGLTTSKLRNLLQYLNNIYTKVYNTNNKELSDEICDELEYLKVKFAYESAREKSVDLFLKKTHMNVLIDRVIKHKSKKFFLDYCKYFEALVAYAKFYNKEN
>CP033460.1|AYU54484.1|723827_724472_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MYSKIKISGQIEVLTGLHIGGGGEISMIGAIDSPVVRDLFTKLPVIPGSTIKGKMRSLLARDFGLKPNQKEHNEDDPIVLRLFGSSNKDNIKRSRLQFSDAFYNQETKAKFDENEVPYTETKYENTINRLTSEANPRQIERVTRGSRFDFQIIYNVEDENEVETDFENIKNGIQLLENDYLGGGGTRGNGRVKFNIEEIETVIGDYDSTNLVLK
>CP033460.1|AYU54485.1|725399_726509_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MSLKTYTINLTTIGPVHIGMGETIRKQEYIYEKNASQVHFVDGKKMTKFFKDKGILKAFLNYITDYKQRADLATFLKDKKIKKEEWKAFITYSEHVNQGKRYTTGQSIKSFESNTKPLNDIHKMVRDGQGSVYIPGSSLKGALRTAIQGNRKIVENHIANRANRFHHVALETQQIVVKEEINKIFNKIKIGDSNPISESDLEIYQKIDINKKAKAMPLYRECIKAGTEVTFTMTIEDDVLSGHELEEIIRLFYKNYWEKWASGFENTVAGKEFFDMGAVPNDKEVREQKAILFVGGGSGFVSKTLYYQINNKTIAKNNSFKVLKNRFRRVYGKMSTQPGNVPIVLKGTVNTSQNKWYQFGACEIQISEK
>CP033460.1|AYU54486.1|726533_727799_+|type-III-A-CRISPR-associated-protein-Csm6
MKIVFSPIGNTDPWRNDRDGALLNIIRTYQPEIVELFFTESIWEGNNRFIGQKNFDWKFIINSISSDAEVRIKVDSIEKEHDFDAYKDLFHSYLVELENEYPEAELLLNVTSGTPQMEATLCLEYITYPKNKTCVQVATPNSSSNAGMKYAKPEDQEIDLEIVNQEESSETSRCKEINILSFREAMLRSQLKGIIYNYDYEAALQLLDIIPKGFRNKKKLRKILVNLTDKIKLHEPFDDIKKEYKDMNVQKAVFHTLLLGMRHRRGDVAETLIRIKAIAEFIVEKYIDKQYPGLIYYFNEKPYLNLEYDPVFIKEYISHAGHFLKEKENLLSFPMYRDILTLLENKGEVLKNVHAVNNINSLRNQVAHNLQSLNLYQNKNEKNIDTAVKAVEKLLLIVYPEVNDSTLNYFDQFNERIKEFI
>CP033460.1|AYU54487.1|727825_728527_+|CRISPR-associated-endoribonuclease-Cas6
MPDKLKSINISSTLHGLLMENLSDESAEFIHHLSYSPLKQRLIFENDETYWEIVCLEDGIAEEVLKFVSLQTSVYLKYHDLKIDLLNFNVERVDVKKLLDKTFSKEKLSRTIKLKIITPMSFKSSGQYDIFPDLRKLFRSIMLQYDAFFESYEMYDRETLSFLTDNIKIIDYQLWSTKFHLEGVRIPSFKGNLIIKINGPLPFLQLVHFLIEFGEYTGAGIKTSLGMGKFNVS
>CP033460.1|AYU54488.1|729273_730119_+|serine-protease
MKVKGLKAGIVTVCAVVGLSFSGAGGEEAHAAGSYYYNGMSNYNESTAYPKAKKISNSNLDIHHISNTMKTKYKAVGRVSNKDGWKGRGKDSMGTGTVIGNYTLVTNAHVIDTAKGAAANPKYITFDMARDGSRKPYTFHATKVVKVPNTDVALVYTKEKMSKYATPLKLASNAQINGLKYNTKLYSVGYPWQNGDNTKTHWSSFRFIQRSSNGTELQTKDKFRAGASGSPMVNGNYQIFGLRTYGYNLWANSTTNYAKVEMAGGEAMNGATGNFVRTHIK
>CP033460.1|AYU56347.1|730343_730715_-|aspartate-1-decarboxylase
MMNAKIHRARVTESNLNYVGSITIAADILDAVDILPNEKVAIVNNNNGARFETYVIKGERGSGKICLNGAASRLVEVDDVVIIMTYAQLNETEIADHAPKVAVMNEKNEIVEMIHEKENTVVL

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Crispr_ID: CP033460_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033460_2

728648-729119

TypeIII

Consensus_repeat	Method
TATCTAATCGATGAGTACCCCGGGCATGAGGGGACGAGAACG	CRISPRCasFinder
TCAATCGATGAGTACCCCGGGCATGAGGGGACGAGAACG	PILER-CR
AATCGATGAGTACCCCGAGCATGAGGGGACGAGAA	CRT

6 spacers

cas6,csm6,csm5gr7,csm3gr7,csm2gr11,cas10,cas2,cas1

The CRISPR arrays of CP033460_2

>merge|CP033460|2|728648-729119|CRISPRCasFinder,PILER-CR,CRT
TATCTAATCGATGAGTACCCCGGGCATGAGGGGACGAGAACGATATACCACTTTAATATATCGGTCAAACATTATCAATCGATGAGTACCCCGGGCATGAGGGGACGAGAACGTGATACATGCGAACGGTGTTATATTGATAGTCAATCGATGAGTACCCCGAGCATGAGGGGACGAGAACCAAACGGATTGACCTTTTTTATCAAAGTACATTGTGAATCGATGAGAACCCCGAGCATGAGGGGACGAGAACAGTTAATATATATCTATCCCACGCTTTCTCAACGACAATCGATGAGTATCCCGAGCATGAGGGGGACGGGAACTGATTTTCGTTATCTTCAAGTAAATAACCTAATTCAAATCGACGAGCACCCCGAGTAAGAGGGGGCGAGAACGGTAGATTTGTTGTTCTTATTTACTCGGATCAATGTGAATCGATGAGTACCCCGAGCATGAGGGGACGAGAAGC

>CP033460|2|2|728648-729119|CRISPRCasFinder
TATCTAATCGATGAGTACCCCGGGCATGAGGGGACGAGAACG	ATATACCACTTTAATATATCGGTCAAACA
TTATCAATCGATGAGTACCCCGGGCATGAGGGGACGAGAACG	TGATACATGCGAACGGTGTTATATTGA
TAGTCAATCGATGAGTACCCCGAGCATGAGGGGACGAGAACC	AAACGGATTGACCTTTTTTATCAAAGTACA
TTGTGAATCGATGAGAACCCCGAGCATGAGGGGACGAGAACA	GTTAATATATATCTATCCCACGCTTTCTCAACGACAATCGATGAGTATCCCGAGCATGAGGGGGACGGGAACTGATTTTCGTTATCTTCAAGTAAATAACCTA
ATTCAAATCGACGAGCACCCCGAGTAAGAGGGGGCGAGAACG	GTAGATTTGTTGTTCTTATTTACTCGGATCA
ATGTGAATCGATGAGTACCCCGAGCATGAGGGGACGAGAAGC

>CP033460|2|2|728653-728829|PILER-CR
AATCGATGAGTACCCCGGGCATGAGGGGACGAGAACGAT	ATACCACTTTAATATATCGGTCAAACATTATC
AATCGATGAGTACCCCGGGCATGAGGGGACGAGAACGTG	ATACATGCGAACGGTGTTATATTGATAGTC
AATCGATGAGTACCCCGAGCATGAGGGGACGAGAACC

>CP033460|2|1|728653-729117|CRT
AATCGATGAGTACCCCGGGCATGAGGGGACGAGAA	CGATATACCACTTTAATATATCGGTCAAACATTATC
AATCGATGAGTACCCCGGGCATGAGGGGACGAGAA	CGTGATACATGCGAACGGTGTTATATTGATAGTC
AATCGATGAGTACCCCGAGCATGAGGGGACGAGAA	CCAAACGGATTGACCTTTTTTATCAAAGTACATTGTG
AATCGATGAGAACCCCGAGCATGAGGGGACGAGAA	CAGTTAATATATATCTATCCCACGCTTTCTCAACGAC
AATCGATGAGTATCCCGAGCATGAGGGGGACGGGA	ACTGATTTTCGTTATCTTCAAGTAAATAACCTAATTCA
AATCGACGAGCACCCCGAGTAAGAGGGGGCGAGAA	CGGTAGATTTGTTGTTCTTATTTACTCGGATCAATGTG
AATCGATGAGTACCCCGAGCATGAGGGGACGAGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP033460.1\|AYU54492.1\|734387_735545_+\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|238434
CP033460.1\|AYU54479.1\|717171_718299_-\|glycine-oxidase-ThiO	unknown	unknown	gnl\|CDD\|274092
CP033460.1\|AYU56346.1\|718301_718874_-\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|238317
CP033460.1\|AYU54490.1\|731579_732377_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
CP033460.1\|AYU54483.1\|723403_723826_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	gnl\|CDD\|273844
CP033460.1\|AYU54493.1\|737766_738477_+\|hypothetical-protein	unknown	unknown	unknown
CP033460.1\|AYU56349.1\|735873_737682_+\|metallophosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|277318
CP033460.1\|AYU54488.1\|729273_730119_+\|serine-protease	unknown	unknown	gnl\|CDD\|379142
CP033460.1\|AYU54486.1\|726533_727799_+\|type-III-A-CRISPR-associated-protein-Csm6	csm6	cd09699_csm6_CAS-III-A	gnl\|CDD\|131720
CP033460.1\|AYU54482.1\|721127_723398_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
CP033460.1\|AYU54489.1\|730719_731580_-\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
CP033460.1\|AYU54487.1\|727825_728527_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
CP033460.1\|AYU56348.1\|732444_733326_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|183829
CP033460.1\|AYU54491.1\|733557_734046_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
CP033460.1\|AYU54494.1\|738534_739470_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187566
CP033460.1\|AYU54480.1\|719843_720752_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
CP033460.1\|AYU54485.1\|725399_726509_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	COG1332_csm5gr7_CAS-III-A	gnl\|CDD\|187793
CP033460.1\|AYU54484.1\|723827_724472_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
CP033460.1\|AYU56347.1\|730343_730715_-\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|376751
CP033460.1\|AYU54481.1\|720751_721054_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09638_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|273699

Protein	Function_ID	Function_description	E-value
CP033460.1\|AYU54492.1\|734387_735545_+\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|238434	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.	8.42834e-172
CP033460.1\|AYU54479.1\|717171_718299_-\|glycine-oxidase-ThiO	gnl\|CDD\|274092	TIGR02352, Glycine_oxidase, glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	2.42783e-67
CP033460.1\|AYU56346.1\|718301_718874_-\|thiamine-phosphate-synthase	gnl\|CDD\|238317	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.	3.56086e-27
CP033460.1\|AYU54490.1\|731579_732377_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	4.27185e-141
CP033460.1\|AYU54483.1\|723403_723826_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|273844	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2. These proteins are found adjacent to a characteristic short, palidromic repeat cluster termed CRISPR, a probable mobile DNA element. This model represents the C-terminal domain of a minor family of CRISPR-associated protein from the Mtube subtype of CRISPR/Cas locus. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2.	6.33537e-16
CP033460.1\|AYU56349.1\|735873_737682_+\|metallophosphoesterase-family-protein	gnl\|CDD\|277318	cd00839, MPP_PAPs, purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	6.65299e-26
CP033460.1\|AYU54488.1\|729273_730119_+\|serine-protease	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	1.03022e-10
CP033460.1\|AYU54486.1\|726533_727799_+\|type-III-A-CRISPR-associated-protein-Csm6	gnl\|CDD\|131720	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6. Members of this family as found in CRISPR-associated (cas) gene regions in Streptococcus thermophilus CNRZ1066, Staphylococcus epidermidis RP62A, and Mycobacterium tuberculosis (strains CDC1551 and H37Rv), as part of Mtube-type CRISPR/Cas systems. CRISPR is a widespread form of direct repeat found in archaea and bacteria, with distinctive subtypes each of which has a characteristic sporadic distribution.	6.48256e-87
CP033460.1\|AYU54482.1\|721127_723398_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0
CP033460.1\|AYU54489.1\|730719_731580_-\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	7.9529e-148
CP033460.1\|AYU54487.1\|727825_728527_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	4.59445e-11
CP033460.1\|AYU56348.1\|732444_733326_+\|oxidoreductase	gnl\|CDD\|183829	PRK12921, PRK12921, oxidoreductase.	4.31109e-99
CP033460.1\|AYU54491.1\|733557_734046_+\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0.000766533
CP033460.1\|AYU54494.1\|738534_739470_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187566	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs. This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	8.11257e-112
CP033460.1\|AYU54480.1\|719843_720752_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	1.50996e-84
CP033460.1\|AYU54485.1\|725399_726509_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	5.4388e-20
CP033460.1\|AYU54484.1\|723827_724472_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.34381e-93
CP033460.1\|AYU56347.1\|730343_730715_-\|aspartate-1-decarboxylase	gnl\|CDD\|376751	pfam02261, Asp_decarbox, Aspartate decarboxylase. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesized initially as a proenzyme which is then proteolytically cleaved to an alpha (C-terminal) and beta (N-terminal) subunit and a pyruvoyl group. This family contains both chains of aspartate decarboxylase.	8.6789e-67
CP033460.1\|AYU54481.1\|720751_721054_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|273699	TIGR01573, cas2, CRISPR-associated endonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. CRISPR systems protect against invasive nucleic acid sequences, including phage. Cas2 proteins have been characterized as either endoribonuclease (for ssRNA) or endodeoxyribonuclease (for dsDNA), depending on the system to which the Cas2 belongs. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes usually are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead of by this model (TIGR01573).	9.93578e-20

>CP033460.1|AYU54487.1|727825_728527_+|CRISPR-associated-endoribonuclease-Cas6
MPDKLKSINISSTLHGLLMENLSDESAEFIHHLSYSPLKQRLIFENDETYWEIVCLEDGIAEEVLKFVSLQTSVYLKYHDLKIDLLNFNVERVDVKKLLDKTFSKEKLSRTIKLKIITPMSFKSSGQYDIFPDLRKLFRSIMLQYDAFFESYEMYDRETLSFLTDNIKIIDYQLWSTKFHLEGVRIPSFKGNLIIKINGPLPFLQLVHFLIEFGEYTGAGIKTSLGMGKFNVS
>CP033460.1|AYU54486.1|726533_727799_+|type-III-A-CRISPR-associated-protein-Csm6
MKIVFSPIGNTDPWRNDRDGALLNIIRTYQPEIVELFFTESIWEGNNRFIGQKNFDWKFIINSISSDAEVRIKVDSIEKEHDFDAYKDLFHSYLVELENEYPEAELLLNVTSGTPQMEATLCLEYITYPKNKTCVQVATPNSSSNAGMKYAKPEDQEIDLEIVNQEESSETSRCKEINILSFREAMLRSQLKGIIYNYDYEAALQLLDIIPKGFRNKKKLRKILVNLTDKIKLHEPFDDIKKEYKDMNVQKAVFHTLLLGMRHRRGDVAETLIRIKAIAEFIVEKYIDKQYPGLIYYFNEKPYLNLEYDPVFIKEYISHAGHFLKEKENLLSFPMYRDILTLLENKGEVLKNVHAVNNINSLRNQVAHNLQSLNLYQNKNEKNIDTAVKAVEKLLLIVYPEVNDSTLNYFDQFNERIKEFI
>CP033460.1|AYU54485.1|725399_726509_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MSLKTYTINLTTIGPVHIGMGETIRKQEYIYEKNASQVHFVDGKKMTKFFKDKGILKAFLNYITDYKQRADLATFLKDKKIKKEEWKAFITYSEHVNQGKRYTTGQSIKSFESNTKPLNDIHKMVRDGQGSVYIPGSSLKGALRTAIQGNRKIVENHIANRANRFHHVALETQQIVVKEEINKIFNKIKIGDSNPISESDLEIYQKIDINKKAKAMPLYRECIKAGTEVTFTMTIEDDVLSGHELEEIIRLFYKNYWEKWASGFENTVAGKEFFDMGAVPNDKEVREQKAILFVGGGSGFVSKTLYYQINNKTIAKNNSFKVLKNRFRRVYGKMSTQPGNVPIVLKGTVNTSQNKWYQFGACEIQISEK
>CP033460.1|AYU54484.1|723827_724472_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MYSKIKISGQIEVLTGLHIGGGGEISMIGAIDSPVVRDLFTKLPVIPGSTIKGKMRSLLARDFGLKPNQKEHNEDDPIVLRLFGSSNKDNIKRSRLQFSDAFYNQETKAKFDENEVPYTETKYENTINRLTSEANPRQIERVTRGSRFDFQIIYNVEDENEVETDFENIKNGIQLLENDYLGGGGTRGNGRVKFNIEEIETVIGDYDSTNLVLK
>CP033460.1|AYU54483.1|723403_723826_+|type-III-A-CRISPR-associated-protein-Csm2
MELAKLKSGTPIDLKYAENVIKKNCETKTFKGKEQTVLFGGLTTSKLRNLLQYLNNIYTKVYNTNNKELSDEICDELEYLKVKFAYESAREKSVDLFLKKTHMNVLIDRVIKHKSKKFFLDYCKYFEALVAYAKFYNKEN
>CP033460.1|AYU54482.1|721127_723398_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MSRKLDLQYGSLLHDIGKIIYRSNSNEFEKGTHSKMGWEYLKKFEEFNHTSIKESVRYHHYKELSQVKLNNNSLAYITYIADNIASGADRRDFIEEGDEGDYSNSFKFDKFVPLNSIFNILNSQSLGISNGSLPFAVSEQVKYPKTTEIVYTSGNYTTLKNDMDIDLRERLKFEPKHFSSLLQWTESLWSTIPSSTNLNQLVDVSLYDHSKVTCAVACCIYDYLESYNINNYKEELFSPYSKTKDFYDKPVFLLASLDMSGIQDFIFNISGSKALKSLRARSFYLEIILEVIVDQLLGKLELSRANLLYTGGGHAYLLLPNTNSTKEIIQDFDESLRKWFINMFSTDLSVAIAYQECTGNDLMNSNNQYRQIWQSVSQKLSDKKAHKYSAEDILRMNQTKSYGERECKECLRSDLELNEEGICPICDGIIKISNNLRDNDFFVVGDNGKLSLPFDLKLKVVNREEVEKLLNSHTDIKIYSKNKAFIGPEVTTNLWMCDYDLASTNEETKKEGISSYVEREIGIRRLGVVRADIDNLGAAFINGIPEKYNSLSRTATFSRNLSMFFKYELNNLLEGSKITVIYSGGDDIFLIGAWDDVISKTIEVRNAFEKFTLNKLTFSAGIGIYPSKYPVSKMASETGELEEAAKQGEKNQVALWNKHKVYKWNTLEKDILNDKLEIISGAFETTADHGKAFIYKIIELLREDSQINIARLAYLLARSNINSHYSNIIFKWSRSEEDREQLITAFEYYVYQTREG
>CP033460.1|AYU54481.1|720751_721054_+|CRISPR-associated-endonuclease-Cas2
MMLLVCFDLPRHSKLEKKQAAKFRKRLIELGFSMKQFSLYERSIRNSSTKEKIVKIISKELPDSGSITMYSLPNKIHNEQITILGENAIKILEKPKLISF
>CP033460.1|AYU54480.1|719843_720752_+|type-II-CRISPR-associated-endonuclease-Cas1
MKDIIYVKRYFFVTVAKQTFKFVNIVDKEESYVPIEDVDMFIFDHPRSYFSNQLVETCVENDITILFCNRKHRPITSVTSNFGYQRRLKRLLLQMKVQKKTKDRIWRKIIISKIKNQSDCLRYTAKLDEEADFIEKIASRIEEGDKTNKEAIAAKRYFNNLYGKEFIRGRYDDAVNASLNYGYALIRAKIRKSLAAYGFEQSFGIHHRSTENPFNLSDDIIEVFRPFVDSYVYEFIYQKNIAEINSEHKEQLIGLLFENCVIDERISSLFDAIDIVIQSLIKCYESNSASYLKLPKMIEEGP
>CP033460.1|AYU56346.1|718301_718874_-|thiamine-phosphate-synthase
MYIAITPYRTLTQDDLRHFLAIAPAIDHLIFRTPMQQADLKRFLERLLQAGFPKSKITVHSDMELLQKLDLRTIHFREHDERAFQFKAAHPQIMVSMSTHSSASAQAAEAHHLDYVLFGHLFSTKSKPGKAPRTQAEIAAVLRVGIPVVALGGINAETLGQVPSGFAGIAAISYFMENDLVTLCSAKEAE
>CP033460.1|AYU54479.1|717171_718299_-|glycine-oxidase-ThiO
MFDLAIVGAGVIGMSIARHLKDSGMRIALIDRDIEGQHASYKAGGMLGAQNEFKEDSPLFRLALKSRAKFDELSKTLQKETGIDIQYQQNGLIKIATEEEDVASLQQQYEFLHAHDKDVEDLSEHDLGELTHYLVKGAQAMMFVPHDHQINANHYTKALHAALQAEDAVERFDHTNVEEITRHGDHYHIAVEAEGKSSELQAEKVVVAAGAWAGFLTDKPEIKETVSGVKGEVVLVENEELDLKHTLFMTNGCYIVPKPPHRFLIGATSYFDDYSVGVSTEGKDWLLHEAIERVPELASSRELKHWSGVRPWTPGEQPIMDEADPNLWVITGHYRNGILLSPIIGELMAEWLKSGERPEELAPFAMRRESYEVHH
>CP033460.1|AYU54488.1|729273_730119_+|serine-protease
MKVKGLKAGIVTVCAVVGLSFSGAGGEEAHAAGSYYYNGMSNYNESTAYPKAKKISNSNLDIHHISNTMKTKYKAVGRVSNKDGWKGRGKDSMGTGTVIGNYTLVTNAHVIDTAKGAAANPKYITFDMARDGSRKPYTFHATKVVKVPNTDVALVYTKEKMSKYATPLKLASNAQINGLKYNTKLYSVGYPWQNGDNTKTHWSSFRFIQRSSNGTELQTKDKFRAGASGSPMVNGNYQIFGLRTYGYNLWANSTTNYAKVEMAGGEAMNGATGNFVRTHIK
>CP033460.1|AYU56347.1|730343_730715_-|aspartate-1-decarboxylase
MMNAKIHRARVTESNLNYVGSITIAADILDAVDILPNEKVAIVNNNNGARFETYVIKGERGSGKICLNGAASRLVEVDDVVIIMTYAQLNETEIADHAPKVAVMNEKNEIVEMIHEKENTVVL
>CP033460.1|AYU54489.1|730719_731580_-|pantoate--beta-alanine-ligase
MTEVITSIQDMQRLARDFKRDGKSVGFVPTMGALHDGHLTMMRRSVAENDVTVISVFVNPLQFAPDEDYNAYPRDIEADTQAAASAEVDYVFHPSVEAMYPGEIGVALKVGRLADVLEGAQRPIHFNGVVTVVNKLFNIVQPDRAYFGKKDAQQLAIVEKMVADFNHPIEIVGQAIVREADGLAKSSLNVYLTEKERQEAPELQKSLKLAEKLYREGERESKIIVEAVTAYLESHTSGHVDEVAVYSYPELVEQQHIKGRIFISLAVKFSKARLIDNLIIGDEEID
>CP033460.1|AYU54490.1|731579_732377_-|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MKQLSNLFDMKLNNEKISMVTAYDYPSAKQVEAAGIDTILVGDSLGMTVLGYESTVQVTLDDMIHHGKAVRRGAPNTFVVVDLPIGTVGVDLEHALRLYQETGANAVKAEGAHLISFITKAAAMGIPVVSHLGLTPQSVGIMGYKMQGATKAAAEQLIADAKAVQEADAVMLVLEAVPSDLAALISKRLAIPVIGIGAGKDTDGQVLVYHDMLNYGQEHRAKFVKQYGDFSTGVEALHHYHEEVREGSFPSEAYTYKKQVLEELD
>CP033460.1|AYU56348.1|732444_733326_+|oxidoreductase
MTLQYGIIGPGAVGTTIAYELLRSLDTDQVHLFGKKAWRVPYRQRDTGEQSELQTQTLAHFDDTLDVLFIAVKTHQLDHVIEQMAHVIDDDTLIILAQNGHGQLEKIDHPHVYQAVVYISGQKTEDGVIHFRDRILQVQEDEFTSELAQHLAETRLELQLKNDIEVEIWYKLLVNLGINSVTAVGRQTAAILRVPEIRNLCRNLLEEGQRIAEAAGITLPETIVEDIMKIYAGYPDEMGTSMYYDITSGAPLEVDAIQGFIYRKGQELGLYTPYLETVYSILAAAENGKLSYK
>CP033460.1|AYU54491.1|733557_734046_+|hypothetical-protein
MSAQQNNHQNSTQNSAIITRLDHLELRMTHLEENKDTNYRLLSERIDSFQKENEKDHQILHKKIDDLKEVNDKEHQRLYEIINDFKLETRLQFESMAQTIERLEKKMDGKIEKLDSKIEKLDSKIDNKFDELKKDLKWKLGIFATIVTATIAIINVCQHFLM
>CP033460.1|AYU54492.1|734387_735545_+|N-acetylglucosamine-6-phosphate-deacetylase
MTEYVVANGRIYTEDKVMDQGYIRVADGKIAEVGAGEYTGDLQVIDAEGKNILPGFIDIHIHGGYGEDAMDASFEGLKHLSESLLSEGTTSYLATTMTQSVENIDRALENIVEYIQFQDTENAAEVAGVHLEGPFISEHKVGAQNPKYVQRPSVEAIQHFQGTAQGNIKIITFAPEVEGAEDTLKALSDYIIFSIGHTVATYDEVNEAVAHGAKHATHLYNAGTPFEHRSPGVFGAVWTNDHINAEAIVDGVHSHPAAVKTAFKMKGNQHFYLITDAMRAKGMPDGNYDLGGQNVIVKGSEARLASGALAGSILKMNDGVRNLMEFTGAPLEGVWRTTSFNQAIALGIDNKKGSIKVGKDADLVIVDDDIQVATTIKNGMIHTFE
>CP033460.1|AYU56349.1|735873_737682_+|metallophosphoesterase-family-protein
MTKIVAGSMASLMLLLATGTANNAEASGGAQATPQQTQQAQQTTNQDGIKLMKQKPEVAPIPKKNSPNRIITNFNGNPQKEMGFNWYTTDKAEQPQVWVSTSKDMKDAKTFAAEAKQVDSQYIERDKSGHFIFADVEKNDDGEPVKGADGKEKINGYYTDANVSGPEWTSGDQHGKASLKNEKEYVYKAQAKDLKPNTHYYYKVGSKNGQQSQVGQFKTGGSANDPFKFVQYTDTQNAYWNEHVRNEAQFGANTIAEAIKTAGNPDFALHTGDFVENSQTEDEWNDIYNQSRPSFMSLPIAAAAGNHDEYPFKEDDKKLLDRFNRHVNVPKANNAVNGGSYYSFDYNNAHMVVANTNDNKKVKDNPEGKAIGKEQMEWIKNDIKQARKNGSKWVILNLHKPMYSKSYHALTDEDIMKVRKELTKEIDDLDVDLVLQGHDHVLARTKVLQHTSTNNSFVNAKIEDAKQVTGKDGVKYYDNPKGSVYVLPNTGGTKAYDDIYSRSLDHIKKIQPDLKWLTEKQRQEYNNLFAVGEQPQKTAAFNDSHSNDRDSSDQNFSVYEVKGNKLIVKIYQLHGDISKGEPRSVKLIDQFGISKDDNKNNK
>CP033460.1|AYU54493.1|737766_738477_+|hypothetical-protein
MKRFLTYSAAVARLSLILTGCSGQSDKKTSDAKAQTTQHDSKQASNNKVTEIKIDKAKLSDKAHEKMKKEVLDWADKYGKQQGLAVSNRYFGAGEISSGDWYAMTPKGELQVSNQGSPGPKAFDRHNLVGVVMYKAKDHTTGFDTKAKDLTNIESYQNVADLNQPVTKYLFADDGKVYEYTFQPEEKVKLSSGFAPKDHNDKDPNLKPDHSFKISDNSSANQEMQRLIKEYSNQSK
>CP033460.1|AYU54494.1|738534_739470_-|NAD-dependent-epimerase/dehydratase-family-protein
MKVLITGGSGFIGSHIAERFHNEGNEVFVVDNLSTGKRENIPFIDDAHFYQENVQNHELLTDLVKTHQFEYIFHLAAMVSVVETVEKPVESNGDNIDSTIHLLEATRQYNTNLKKFFFASSAAIYGDLPDLPKSVEGSNVNPLSPYAVQKFAGEQYTKIYHTLYGLPTVALRFFNVYGPRQNPESDYSGVLSIINQKFLNKAPFTFFGDGKQTRDFIYINDLMQAIWIAIEDDSTNGKVFNAGTGKQTDLITVFNAFSDYFGYEIPYSFADARAGDIKHSYSDVSPLKELGFRPEYDIMKGIAAYLKYNEK

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Crispr_ID: CP033460_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033460_3

824623-824730

Orphan

Consensus_repeat	Method
ATTTTCTATTCAGATAGCTACTGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033460_3

>merge|CP033460|3|824623-824730|CRISPRCasFinder
ATTTTCTATTCAGATAGCTACTGCCAATTTGGAACAAGCGCATTTTCTATTCAGATAGCTACTGCCAATTTGGAACAAGCGCATTTTCTATTCAGATAGCTACTGCCA

>CP033460|3|3|824623-824730|CRISPRCasFinder
ATTTTCTATTCAGATAGCTACTGCCA	ATTTGGAACAAGCGCATTTTCTATTCAGATAGCTACTGCCAATTTGGAACAAGCGC
ATTTTCTATTCAGATAGCTACTGCCA

Protein	Signature genes	Signature genes Name	Protein_function
CP033460.1\|AYU54568.1\|819344_820577_-\|peptidase-T	unknown	unknown	gnl\|CDD\|235484
CP033460.1\|AYU54573.1\|825605_826490_+\|DegV-family-protein	unknown	unknown	gnl\|CDD\|273257
CP033460.1\|AYU54569.1\|820590_821088_-\|threonine/serine-exporter-family-protein	unknown	unknown	gnl\|CDD\|226137
CP033460.1\|AYU54564.1\|815933_816458_-\|GrpB-family-protein	unknown	unknown	gnl\|CDD\|377252
CP033460.1\|AYU54565.1\|816563_817466_+\|EMYY-motif-lipoprotein	unknown	unknown	gnl\|CDD\|380197
CP033460.1\|AYU54571.1\|823403_824456_+\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
CP033460.1\|AYU54578.1\|832236_833353_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
CP033460.1\|AYU54574.1\|826574_827876_+\|DNA/RNA-helicase	unknown	unknown	gnl\|CDD\|226583
CP033460.1\|AYU54580.1\|834861_835503_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|378993
CP033460.1\|AYU54567.1\|818145_819276_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
CP033460.1\|AYU54581.1\|835509_835755_+\|DUF2198-family-protein	unknown	unknown	gnl\|CDD\|227234
CP033460.1\|AYU54570.1\|822057_823125_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
CP033460.1\|AYU54572.1\|824812_825454_-\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|224653
CP033460.1\|AYU54577.1\|829533_832062_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
CP033460.1\|AYU56354.1\|821106_821817_-\|threonine/serine-exporter	unknown	unknown	gnl\|CDD\|377697
CP033460.1\|AYU54576.1\|828638_829202_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|224461
CP033460.1\|AYU54579.1\|833664_834651_+\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
CP033460.1\|AYU54563.1\|814928_815855_-\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|184386
CP033460.1\|AYU54566.1\|817596_817917_+\|bacillithiol-system-redox-active-protein-YtxJ	unknown	unknown	gnl\|CDD\|274921
CP033460.1\|AYU54575.1\|827868_828570_+\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970

Protein	Function_ID	Function_description	E-value
CP033460.1\|AYU54568.1\|819344_820577_-\|peptidase-T	gnl\|CDD\|235484	PRK05469, PRK05469, tripeptide aminopeptidase PepT.	0
CP033460.1\|AYU54573.1\|825605_826490_+\|DegV-family-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	1.32146e-114
CP033460.1\|AYU54569.1\|820590_821088_-\|threonine/serine-exporter-family-protein	gnl\|CDD\|226137	COG3610, COG3610, Uncharacterized conserved protein [Function unknown].	9.51234e-38
CP033460.1\|AYU54564.1\|815933_816458_-\|GrpB-family-protein	gnl\|CDD\|377252	pfam04229, GrpB, GrpB protein. This family has been suggested to belong to the nucleotidyltransferase superfamily. It occurs at the C-terminus of dephospho-CoA kinase (CoaE) in a number of cases, where it plays a role in the proper folding of the enzyme.	1.5148e-18
CP033460.1\|AYU54565.1\|816563_817466_+\|EMYY-motif-lipoprotein	gnl\|CDD\|380197	NF033194, lipo_EMYY, EMYY motif lipoprotein. Members of this family are lipoproteins, about 300 amino acids long in precursor form, found broadly in the genus Staphylococcus and in some related species.	3.52934e-111
CP033460.1\|AYU54571.1\|823403_824456_+\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	4.93717e-86
CP033460.1\|AYU54578.1\|832236_833353_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
CP033460.1\|AYU54574.1\|826574_827876_+\|DNA/RNA-helicase	gnl\|CDD\|226583	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].	5.94446e-143
CP033460.1\|AYU54580.1\|834861_835503_+\|HD-domain-containing-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.4346e-56
CP033460.1\|AYU54567.1\|818145_819276_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	6.73707e-117
CP033460.1\|AYU54581.1\|835509_835755_+\|DUF2198-family-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	1.15811e-27
CP033460.1\|AYU54570.1\|822057_823125_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.58988e-43
CP033460.1\|AYU54572.1\|824812_825454_-\|YigZ-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	6.50103e-67
CP033460.1\|AYU54577.1\|829533_832062_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
CP033460.1\|AYU56354.1\|821106_821817_-\|threonine/serine-exporter	gnl\|CDD\|377697	pfam06738, ThrE, Putative threonine/serine exporter. ThrE is a family of bacterial and Archaeal proteins that catalyze the export of L-threonine from the cell. UniProtKB:Q79VD1 has been characterized as being necessary for this export. The domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent efflux of threonine and serine.	1.0355e-73
CP033460.1\|AYU54576.1\|828638_829202_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	3.78102e-35
CP033460.1\|AYU54579.1\|833664_834651_+\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.61316e-36
CP033460.1\|AYU54563.1\|814928_815855_-\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|184386	PRK13906, murB, UDP-N-acetylmuramate dehydrogenase.	0
CP033460.1\|AYU54566.1\|817596_817917_+\|bacillithiol-system-redox-active-protein-YtxJ	gnl\|CDD\|274921	TIGR04019, hypothetical_protein, bacillithiol system protein YtxJ. Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018), is described as thioredoxin reductase-like. [Unknown function, Enzymes of unknown specificity].	3.16059e-44
CP033460.1\|AYU54575.1\|827868_828570_+\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.07399e-30

>CP033460.1|AYU54571.1|823403_824456_+|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MITLLLVIFSMIVSLILTPIVIKISIKLDIMDKPNYRKVHTRPVSVLGGTVILFSFLLGIWIGHPIEREVIPLIIGAVIMYLVGLIDDVYNLKPILKLLGQCLAALVVAYYGVTIDFIQLPFGIIHFGILSVPITVFWIIAITNAINLIDGLDGLAAGVSTIAFMTIGFIAILQADIFIIMICSVMIGSLIGFLFYNFHPAKIFLGDSGSLQLGFIISFLSLLGFKNITFFSLFFPIVILAVPFIDTLFAMIRRAKKGQKIMQADKSHLHHKLLKLGYTHRQTVVLIYSIAILFSISSVILYLSQPWGVVMMLILILITIELIVEFTGLIDDNYRPFLRLLEKRHQKHED
>CP033460.1|AYU54570.1|822057_823125_-|GGDEF-domain-containing-protein
MIEAIIYNISVTVAGIYLFHRLQYSETKQMKFSQTYVTILMTVVALLLAAYPIPVHDYLLFLTFVPLLFLGRYTNVFFTMVSAAIIFVVDVFVYGDPLAYNIALLIIALAVSFIGPFIKQNDIVSLQILNAISLIILSIVSIITKLYTLQEIIYLIPISFVVTIASSITFVDIWRFFTLVQRYESEDRYDYLTGLGNVKEFDRYLNKMTDEAEDKSTSLGLLLIDIDGFKDVNDAFTHRSGDAVLKQISQLLINYVPPNIRIFRNGGEEFSVVVLGYSLDQSVKLAESIRAGVEQSTFHLPDKEVIKLSVSIGIGYLTAEDYKSQRKVFKDADDMLHMAKNEGRNQVMFNPIVKS
>CP033460.1|AYU56354.1|821106_821817_-|threonine/serine-exporter
MTAGKILLESGAETYRVEDTMSRIAYSYGLDNTNSFVSNTAIIFSLNDRTNTRLIRVRDRTTDLEKIALANNISRKIAKKQLSIDEAKSELIHLEHASLQYSYLTKFIAVSIACGFFLFMFGGVAQDFIYAVIAGAGAYLTFDYVQRFIQIKFFSEFISAIVVIGVAAVTHKLGLSVNQDIITIAGVMPLVPGILITNAIRDLMAGELLAGMSRGMEAALTAFAIGAGVAIILLFF
>CP033460.1|AYU54569.1|820590_821088_-|threonine/serine-exporter-family-protein
MLFQYIFQFLISFCSTLLFSILFNAPRKLLPACGFVGAMGWIIYVIAMDMNTGKVAASFLGSFILAIMSHAMSKRYFQPVIIFIVPGIIPLVPGGAAYEATRFLVTNQYTHAVNTFLEVTLISGAIAFGILCAEIAYHTYNRILANYGKMKGKSYHKPFNMNNRS
>CP033460.1|AYU54568.1|819344_820577_-|peptidase-T
MKQELIDRLKRYAEIDTQSDPDSETTPSTEKQWDLLNLLKQELEELGLQTDIDDNGYLFATLESNIADEVPTVGFLAHVDTSHDFNASNVKPQIIENYDGKSIQLGDTDRELNQDVFPAMKSVEGHTLMITDGTSLLGADDKAGVAEIMTALTYLVEHPEVKHGRIRVAFTPDEEIGRGPHKFDVDRFNADFAYTMDGSQYGELQFESFNAAEANITCHGVNVHPGSAKDVMVNAIKLGERFDSLLPEDEVPEKTEGYEGFFHLMNFNGSTEKAQLKYIIRDHDRERFEARKACLLEIRDQINADYHNNPVEVDMFDQYHNMAEKINEVPEVIEVPKRVFKKLGIEPNTEPIRGGTDGSQLSFMGLPTPNIFTGCDNFHGPFEYASIDVMERAVEVILGIAEEIAQPTTK
>CP033460.1|AYU54567.1|818145_819276_+|glycerate-kinase
MRVLVAMDEFNGIVSSYEANRYVEEAVASQIEKADIVQVPLFNGRHELMDSVFLWQSGTKYREMVHNADMKQVEAVYGQTENGLTIIEADLFLQGEAPIQKRSSFGLGELMKKALDNDAEHLVISLGNIASFDGGAGMLQALGARYYDDEGQPIDTRKGTEVLKYIRHIDLTQLHPRLAQVRIQLVSDFASKMYGKNSEIMQVYPLLNVTREEAATIDNLVWYFSEILKNEAHLLTSTVERGGAGGGVAALLAALYDAEILTSHHLVDQITHLENLIEQADLVMFGEGVNEADHLLETTTLRIAELATKYHKPCIAINATNDKFDRYEALGVTGMFNLFMEMPEHYTSFKAGIQIRFYAVQALKLLKTHFDVDKKA
>CP033460.1|AYU54566.1|817596_817917_+|bacillithiol-system-redox-active-protein-YtxJ
MATKLTSIDQFKQVINDNKYVFILKHSNTCPISANAYDQFNKFLYERDIDGYYLVVQEQRELSDYIAEETGVKHESPQAFYFVEGNVKWHASHDDINVSSLAQAEE
>CP033460.1|AYU54565.1|816563_817466_+|EMYY-motif-lipoprotein
MKTWLLTILLVIVTISLAACGNRTQSDLNQFEQSMSEVDKKQNHVKKVMDDMHLNRLNELSKSDLTDRNQEDFEQMSKDMDKKLMPAFQSYKEAAKALPAGTKDVKALRSQYLKEVDKQEKALKDDRAYIHLCNQSIKANEDILNYTRLFEKRRAQLEIKVSDAKKAGETKSANALVSKLKDNNKQLQDVAKKYLDGVDPKQTKSVIKNKIEPLISKQIEDLNQSNVTDSETTKARQSAIEMYYSLQNYYETRQQTIDISTKLEDYDMNKLPLTGKDLSKYHKQYNKNLKHLKQELSKNN
>CP033460.1|AYU54564.1|815933_816458_-|GrpB-family-protein
MYTKTQPLISDANLLVVYHNLFKDYEDLLFGLLNTPVKSVHHIGGTAHFNYATEPILDILVGVNNLHDITALDEKRLNYAGFYRIHHHYKKKVMMVKFNNLIELKQQVRLHILQIESKAYSDYLQMQDALERSNSLGSLFKEEKELLHASTQSIREYEVQKEKLFAKLSRQYLD
>CP033460.1|AYU54563.1|814928_815855_-|UDP-N-acetylmuramate-dehydrogenase
MLKDDILKELKKVLPEEIIKVDEPLKRYTYTQTGGNADFYLSPTTNDEVQAINHFARMHNIPVTYLGNGSNIIIREGGIRGIVLSLLSMDYIKVEDNVIIAGSGAAIIDVSRKARDKALTGLEFACGIPGSVGGAVFMNAGAYGGEIRDCIEHAVCVNERGELVTLTRDELELGYRSSIVQKQHLVVLEAAFNLTPGNQEDIQAVMDDLTERRETKQPLEYPSCGSVFQRPPGHFAGKLIQDSELQGHRIGGVEVSKKHAGFMVNVDNGTATDYEDLIHHVQKVVKEKFDVELHPEVRIIGEYPEGHR
>CP033460.1|AYU54572.1|824812_825454_-|YigZ-family-protein
MENHIITIKQEYIIENTINKSRFIAHIKPVQTEEEAKAFIDTVKKEHREATHNCSAYTIGDNMLIQKANDDGEPSGTAGVPMLEILKKLDTHNTAAVVTRYFGGIKLGTGGLIRAYSGAVRDAIKDGGRVELRNAYPTTVTISYDLTGKLEYELQSTDFILRDTIYTDKVSYKIDVLEDDFEDFINFLNRITAGKYELEKGEATRLPFDIETK
>CP033460.1|AYU54573.1|825605_826490_+|DegV-family-protein
MKIAVMTDSTTSLPQRLIDKYNISVVSLSVTFANGDNYIEGKELNASELYRRMKSEKTLPTTSQPAIGNVIQEYERLRDAGYTDVVGLFLSAGISGTYQAATQAGEMVEGINVHTFDSKLSGMILGGYVIYAAERVEAGLTAEEVMKELLEMREYTGALVVVDDLKNLQKSGRITGAQAFIGSLLKMKPVLEFVDGKILPLDKVRTKKRAIKTIEQGVLDRVKDYDNVTLYVVNGDAKEDGLKLFKHLKENYPDYVINYSEFTPVIATHLGVGSVALGFTNKHIATLANSPEEE
>CP033460.1|AYU54574.1|826574_827876_+|DNA/RNA-helicase
MIEIKHYGKLIRNKEDLSDETIRTVQKGVIKNKQGRWQCIQCESSERADYYTYYSEPLHTEITYCRHCLQLGRMDTHNDVYITDTHQEISKAEYHLDFQLSEQQTYASENVIRAIQIHEKLLLYAVTGAGKTEMMFAGIQYARQQGYNVAVISPRVDVVVEISARIAEAFSAEKIDVLYQGQSQQYNGHFVVATVHQLYRFKHHFDVIFIDEVDAFPLSMDPLLMQTINSASVSTASHIYMTATPSRKLRSQFKPANIITLPARYHRRSLPVPTYRYLKFKPSQLQPQLLRLFQQQINNQRYTLVFFNHIEAMKAAFEIYAEHIPDLIYVHSEDALRFDKVTALREGRHPIVFTTTILERGFTMPRLDVIVLESQTYSTAALVQIAGRVGRKLQDTSGLVLYLHNGVSLSMLRAKAQIKQMNTIGLQKGWLDA
>CP033460.1|AYU54575.1|827868_828570_+|ComF-family-protein
MPKCCQCLQKFTDPLTADNFYRKPEILCETCREAWQQSLISREKKALESVGRCTRCLKPLAENETECLDCKFLAQRFTLINQLYCNYQYQGTVRDVIHQYKIAGDTALCEVIAEQISLPKKKYDYIVPIPSPLERDVKRTFNPVEQVLKAKKIAYMPLLNTQIRPKQSSLGKRERALAENPFCFSAMAQSLNLENKAILLVDDIYTTGLTVHHAAEILLVRKIGKVDVFTFAR
>CP033460.1|AYU54576.1|828638_829202_+|ribosome-associated-translation-inhibitor-RaiA
MIRFEIHGDNLTITDAIRNYIEDKVGKLERYFTNVPNVNAHVKVKTYANSSTKIEVTIPLKDVTLRAEERNDDLYAGIDLITNKLERQVRKYKTRVNRKKRKDSEQEPFPATPETPPEAADHDKDDEIEIIRSKQFSLKPMDSEEAVLQMDLLGHDFFIFTDRETDGTSIVYRRKDGKYGLIETLEN
>CP033460.1|AYU54577.1|829533_832062_+|preprotein-translocase-subunit-SecA
MGFLTKIVDGNKREIKRLSKQADKVLALEEEMSILTDEEIRNKTKAFQERLQAEEDVQKQNKILDEILPEAFALVREGAKRVFNMTPYPVQIMGGIAIHNGDISEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLASFQSEEMAELYNFLGLTVGLNLNSLSTEQKRQAYNEDITYSTNNELGFDYLRDNMVNYSEERVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKAEDDYNYDEKTKSVQLTDQGADKAERMFKLDNLYDLNNVDIITHINTALRANYTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNRPVQREDKPDLIYISQKGKFDAVVEDVVEKHKKGQPILLGTVAVETSEYISQLLKKRGVRHDVLNAKNHEREAEIVSTAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDRGESRFYLSLQDELMVRFGSERLQKMMGRLGMDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNNIIDSESSSELVITMMRSTLDRAITYYVNEEIDEIDYTPFINFIEDVFLHEGEVKEEEIKGKDREDIFDTVWAKIEKAYEAQKANIPEQFNEFERMILLRSIDGRWTDHIDTMDQLRQGIHLRSYGQQNPLRDYQNEGHQLFDTMMVNIEEDVSKYILKSVITVDDDIERDKAKEYQGQHVSAEDGKEKVKSKPVVKDNHIGRNDPCPCGSGKKYKNCHGK
>CP033460.1|AYU54578.1|832236_833353_+|peptide-chain-release-factor-2
MELSEIKRNLANYEEKLNQLRGSLDLEEKETNIQEYEEMMTDPNFWDDQQKAQEIIDKNNAIKHVVNGYRDLEAELEDMTATHELLAEEYDEDLKADLEEEAIGFKDKLDQFELQLLLNGPYDANNAILELHPGAGGTESQDWASMLLRMYQRYAEQQGFKVEVADYLPGDEAGVKSVTLVIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSCDVIPEFSNNEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQEREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGNVNAVMDGEIGPFIEAYLRTQMDNREA
>CP033460.1|AYU54579.1|833664_834651_+|CHAP-domain-containing-protein
MKKALLLSAASVTVFTGLNSVANAEQTHVVKENAKLSDVAALFATTTNEIKNLNKLNQDEVKKDTQLVLPDTDVVEVKAGDSLNSIAKAHHLTLNKLHELNPGLTNVILPGDILAVSDKGAAHLQALYSGKAVKEVEKQSYNEEQQQTEQPTHSGYRTVEHKEAAPTTYYSNDSSSEYTAPAQAAHSYYSAPTTNSDYTSYNTNTTSYSAPAATQASYSNYSGANYYTAGQCTYYVFDRAGGKAGSLWGNANNWASAAAASGRTVNNTPSAGAIMQSSAGAYGHVAYVEGVNGDGSVRVSEMNYGYGPGVVTSRTLSAGQAASYNFIH
>CP033460.1|AYU54580.1|834861_835503_+|HD-domain-containing-protein
MGVHQYFKRLSDLEKLIRLPGKFKYFEHNVAAHSFKVTKIAQYLGTVEEAHGNEINWKNLYEKALNHDFAEVFTGDIKTPVKYASRDLKVLFSQVEEEMVDNFIREEFPPEYQDVYRERLQEGKDDSLEGQILAVADKIDLLYETFGEIQKRNPDDLFFEIYEMSLETIMQFDHLVSVQDFIDNVIPEMLTENFIPRSELRELTMSILNKRDG
>CP033460.1|AYU54581.1|835509_835755_+|DUF2198-family-protein
MVLVWYLCASFFPCVLVVLFSVITKNKWVGAIVTLTLIGGSIYKGFFHNEWIIFIDVVSLLAGFVIVDQLNLHKQHEDEDR

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Crispr_ID: CP033460_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033460_4

1209198-1209293

Orphan

Consensus_repeat	Method
ATTGTTTCTTCTAATTCATTCTAATTAATAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033460_4

>merge|CP033460|4|1209198-1209293|CRISPRCasFinder
ATTGTTTCTTCTAATTCATTCTAATTAATATATTCTCAACTCTTTTGATATTGAACACAAACATGATTGTTTCTTCTAATTCATTCTAATTAATAT

>CP033460|4|4|1209198-1209293|CRISPRCasFinder
ATTGTTTCTTCTAATTCATTCTAATTAATAT	ATTCTCAACTCTTTTGATATTGAACACAAACATG
ATTGTTTCTTCTAATTCATTCTAATTAATAT

Protein	Signature genes	Signature genes Name	Protein_function
CP033460.1\|AYU54949.1\|1211711_1212044_-\|hypothetical-protein	unknown	unknown	unknown
CP033460.1\|AYU54942.1\|1206459_1206786_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
CP033460.1\|AYU54951.1\|1212822_1214487_-\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|227806
CP033460.1\|AYU54944.1\|1207096_1207630_-\|spore-coat-protein	unknown	unknown	unknown
CP033460.1\|AYU54950.1\|1212356_1212554_-\|hypothetical-protein	unknown	unknown	unknown
CP033460.1\|AYU54952.1\|1214491_1215349_-\|mobile-element-associated-protein	unknown	unknown	gnl\|CDD\|214926
CP033460.1\|AYU54943.1\|1206782_1207100_-\|hypothetical-protein	unknown	unknown	unknown
CP033460.1\|AYU54947.1\|1210355_1210976_-\|hypothetical-protein	unknown	unknown	unknown
CP033460.1\|AYU54948.1\|1210968_1211337_-\|pathogenicity-island-protein	unknown	unknown	unknown
CP033460.1\|AYU54939.1\|1203287_1203905_+\|ATPase	unknown	unknown	unknown
CP033460.1\|AYU54954.1\|1215829_1216189_-\|pathogenicity-island-protein	unknown	unknown	unknown
CP033460.1\|AYU54945.1\|1207690_1208164_-\|phage-terminase-small-subunit-P27-family	unknown	unknown	gnl\|CDD\|377461
CP033460.1\|AYU54955.1\|1216191_1216395_-\|pathogenicity-island-protein	unknown	unknown	unknown
CP033460.1\|AYU54941.1\|1205542_1205980_+\|DUF3102-domain-containing-protein	unknown	unknown	gnl\|CDD\|371455
CP033460.1\|AYU54938.1\|1201591_1202146_+\|hypothetical-protein	unknown	unknown	unknown
CP033460.1\|AYU54953.1\|1215435_1215735_-\|DUF1474-family-protein	unknown	unknown	gnl\|CDD\|369323
CP033460.1\|AYU54936.1\|1200543_1200798_-\|hypothetical-protein	unknown	unknown	unknown
CP033460.1\|AYU54946.1\|1209884_1210343_-\|hypothetical-protein	unknown	unknown	unknown
CP033460.1\|AYU54940.1\|1203901_1204087_-\|hypothetical-protein	unknown	unknown	unknown
CP033460.1\|AYU54937.1\|1200912_1201407_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP033460.1\|AYU54942.1\|1206459_1206786_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	8.32804e-06
CP033460.1\|AYU54951.1\|1212822_1214487_-\|DUF927-domain-containing-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	2.35736e-59
CP033460.1\|AYU54952.1\|1214491_1215349_-\|mobile-element-associated-protein	gnl\|CDD\|214926	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1). This alpha helical domain is found at the C terminal of primases.	1.03563e-11
CP033460.1\|AYU54941.1\|1205542_1205980_+\|DUF3102-domain-containing-protein	gnl\|CDD\|371455	pfam11300, DUF3102, Protein of unknown function (DUF3102). This family of proteins has no known function.	1.72207e-12
CP033460.1\|AYU54953.1\|1215435_1215735_-\|DUF1474-family-protein	gnl\|CDD\|369323	pfam07342, DUF1474, Protein of unknown function (DUF1474). This family consists of several bacterial proteins of around 100 residues in length. Members of this family seem to be found exclusively in Staphylococcus aureus. The function of this family is unknown.	3.87208e-26
CP033460.1\|AYU54945.1\|1207690_1208164_-\|phage-terminase-small-subunit-P27-family	gnl\|CDD\|377461	pfam05119, Terminase_4, Phage terminase, small subunit.	2.68037e-21

>CP033460.1|AYU54945.1|1207690_1208164_-|phage-terminase-small-subunit-P27-family
MAQRKLLSQQKSRLTREVQENKKATEEAMKKLTSLEAEPPEWLDDRAKQEWFRIYPLLKELPIASLDLALVSAYCQAYSDYIQATERMKQEGAVVVTERGTKLNQNHAIKRDALAQLNSISSKLGLTVESRLKILDPKNETPKKQSVYDQFGISDND
>CP033460.1|AYU54944.1|1207096_1207630_-|spore-coat-protein
MLNKSENTFNYEREERISEYELLVKYNPQFINRKCQALEEQIKAMYHLNISHMACDEATGVVFTSYPLEKLVIWIVEKKEELERYKNHSLKRMNLLKSIVSAYPYHEQQEIMHYMRTNGVYKPYKSIEKLCEDLYKNTHEARLMRQRGHLKDQRKYFDEEVGKVRAALQTQKEELVI
>CP033460.1|AYU54943.1|1206782_1207100_-|hypothetical-protein
MSSLKSFDYKILSGYMENYQILVDEYKTQASQVTEQRYNRVKSIVKGITEVYNNATLQEQQLIKMLWWDKQPYDIIADVLGVTENTIKHARAVILGRVAKASVYI
>CP033460.1|AYU54942.1|1206459_1206786_-|sigma-70-family-RNA-polymerase-sigma-factor
MIYDKESVRAFILSYESRPIDEPPVEQDIDDFFSLDQPTTSIEMSDNFEEHIFFNELSSVIENIGTEKEFVVFDLLAHGWSYEKIGEMLMVTSGRVQQIFSRLLDKLP
>CP033460.1|AYU54941.1|1205542_1205980_+|DUF3102-domain-containing-protein
MKSYQNIAGQSIFEIGRRLKHVKENDLAHGEFGKWLEKVNMSRSTARRFMKVAENPELNSPSMANLGTSILYEIATLPDKEREKEHLTSSGEKKTPDEMTQRELQDLKKQLKQRDEQNAQLQSQVEQAQRSEEIARKQLEEAENR
>CP033460.1|AYU54940.1|1203901_1204087_-|hypothetical-protein
MKIFMKHGVFVKWYESGGLDRNQVYYYINLNQFSTNLENTQKDNFLNAPKSLQKEVMKNKG
>CP033460.1|AYU54939.1|1203287_1203905_+|ATPase
MAQVITSLILTGFLGYIPYKYLVLIGLVSEDRQTINAPILLLFSVETIIIWCTAFAFVYGNIDISNLYTSEFITLTKLSIVFTLLFILVIFIFNPLIINSIIKLVNITRMKFNLDKMSILDKRDELFNNNRKPVFIVIRDFENKILNEGELITYNSSGSDFDLLEIKPQKFKVSNLPYEDDYYTTHTIIDLKQKVKLELYLMKIS
>CP033460.1|AYU54938.1|1201591_1202146_+|hypothetical-protein
MKKLLMLLLASFLVLGACGQKEESKSDDQKSETTQKKDKKEDKKKSDSKKESKKESEENNQNQETAVQNDDQQQADQQNMNVQNNEQQNTQQATAPQNNQQQNANVQNNQQAAQPQQSQALTKDEVTQKLKSGQNVNGVVDAEGNTWHQAPGGGDAVGMTKPDGTTCTVGGCMTPDGRSVPDEE
>CP033460.1|AYU54937.1|1200912_1201407_-|hypothetical-protein
MDIKFMQQLDFLLKYISNNTSHYSNRYKLIFEYNHFIYEGDFIPELKSLQVVLKDVTSFNEDDLNLISLKNESAFETIRKHQSLFGKSYLKLLTERINEYSPQDYFRLLVDSLEKYPVEFESELPPYIYNLKSENSNHPLNLEIMKIPQDAQFDFVSIVKVDPE
>CP033460.1|AYU54936.1|1200543_1200798_-|hypothetical-protein
MNAKQKYVDVLTKEKPDLIEVLFEFEANVHPKIDGKGHGEGAVFVGRVNLYVVLDDKVYDYVIADLHEVKFHNNMFEHSVEFKY
>CP033460.1|AYU54946.1|1209884_1210343_-|hypothetical-protein
MITAIRYKGNRAKVTENGEDLMILASSSSVPVELADADNKLNIVSDFEEGEIEPQAVKKIKFNKNSCVMMNGNLNFIIASSQRNNREFIVKKNHTLVHAWKSGDNAKDKAFEQIKGNKVDSVDVYVKNAEGKDNRVSHMGEILAVSINLNGA
>CP033460.1|AYU54947.1|1210355_1210976_-|hypothetical-protein
MSKKVKENSISIFDKQIYGKRLRAKEVQQKYNQLVDRIKKINAKITHCQNQDEYAEATKLKRHQANLEQELLEVDEQLKTSDYSITDDEFTEFYGTYEDEMTDIKKAHEQYRKEMKAQLQEVASTYRKMIENKNEGGRRISRLRYVKQEQQHPSNIHNQYKGQMLADEVEIGGNTTPRDYAWLLEDMLKEESLEDFQKYHSGKKKW
>CP033460.1|AYU54948.1|1210968_1211337_-|pathogenicity-island-protein
MDKTKDEVQKLPDEHRQVVNVIINAPNKHITKEKILNQLGYAANSTNERWVRRIIRDLSTNYGYPIGCSYSPKQNGYFMITTQEEKERAINSLNNLIRGSVRRRDVIKSINIKNEKEVVNYE
>CP033460.1|AYU54949.1|1211711_1212044_-|hypothetical-protein
MTDINKPEHFEELNKVKKNALLEFCYSINKIKTFNVRRSSYGLKHVFERIYSEALSGTFEGSYITNGQFKGAMMKAGFKVKDETRLNWHFNASEKSIKELEVKHSNSCRN
>CP033460.1|AYU54950.1|1212356_1212554_-|hypothetical-protein
MIKRKEELRGIEGELLKNNERRSKSMNIETIAPHDTDDKYSDTTNIIEPRKGSNLYKKIKSVYGE
>CP033460.1|AYU54951.1|1212822_1214487_-|DUF927-domain-containing-protein
MAELPTEITEIVNDSNAAESIPTNYQVRDNGWLYKMVEKGRGDDKQVVPILITSTPPFITKKYKDIETNEFTYEMTFNNGGRTYQFPVFARDLADATHLIGLASRGLDVNTTNRTDLVNYISMYMRLNPLPITNIVTRLGHVGKYFVHPLDSEIELTIHEQGYKNIANQFKTKGTLQGYADNVFNLISNSYPAMMMLYASCGSILLHDFDVEPFIVDLSGASSRGKTTALKVASSVWGTSKLISEWNTTRVNIERKSAFLNSYPLLLDDSRKANPYMIPDVIYQFSGGREKGRGNKSSIEVERTWQNIMLSTGETSLADSGNEKAGIGARVITLQDDPFNSDVSFIDLYEGINNQYGTLGMAFMEQYRKNKEGYYNSFKSHEKRLIEKAGTNEIVARIGRAFALLQVAGEIINDIEGFQHDPYTTLDRTYNKMLETNKNIDKPKQLLEELLQYLDANRNHIEGEGYYTVTNGDVKAIYKRDYLLVMGETLKQFLGHELHSITKSWNERSYLITDKQKLTKRVGHKGKKPRGYAIKEEIIKQLDFDFNQYHSDYE
>CP033460.1|AYU54952.1|1214491_1215349_-|mobile-element-associated-protein
MNKINLEYDVQVSIVWYDSLDAGSFKQFSQPKWNELVNRLAIPQININKYSRGVAVYGDLADSGKGKKYRADNNVIYRNVLVLDYDDISDLKALNEAFKAHLGAFAYFWHTSYSHHTEAPRLRLFIPLNERINGEDYRKYTKVLASKIGHKVDEGSYQPSRAMALPVIKDKSCAFVYRYNDAPILDCSTIEGWANEFKQEDTPITVSYHKKHSAEHWQSVAMGVGAGERNTVLTQIIGYLLRRYVDPSLVYGLAYGWAKQCTPPIEDKEIIKTFKSIYLRHTRKE
>CP033460.1|AYU54953.1|1215435_1215735_-|DUF1474-family-protein
MNWELRDLFCDLDIVKEKINDVVTSVVWFDEKYFTHGPNHKLSREEIKMHGLKYHECRIQNTQLIDLMIMYMKEFNEIMEKIHEIEKASLNGEQTERDA
>CP033460.1|AYU54954.1|1215829_1216189_-|pathogenicity-island-protein
MEKLNSKDYENVKNIVSIDRSLKNSLFTKKMVELLQERHDREFSIIKKEYPNLSDDEIVNILGDYREYINLIDSIEIFINFPLNYMDSNISKFLTEDDIEELKIAIEEMTGFVEGLEEK
>CP033460.1|AYU54955.1|1216191_1216395_-|pathogenicity-island-protein
MKQQVIITKSIVGWYNIKDTQHNLLLNIAPDVFKKHFPEVSEDICIACLEMDISRILELKNKKKVGN

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Crispr_ID: CP033460_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033460_5

1502635-1502727

Orphan

Consensus_repeat	Method
CTATTCTAGTTAGCTTTGCCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033460_5

>merge|CP033460|5|1502635-1502727|CRISPRCasFinder
CTATTCTAGTTAGCTTTGCCGGGGCAGAACGACGAAATAATTTTAACCAATGTTATTTCTGTTCTGCTCCCTATTCTAGTTAGCTTGGCCGGG

>CP033460|5|5|1502635-1502727|CRISPRCasFinder
CTATTCTAGTTAGCTTTGCCGGG	GCAGAACGACGAAATAATTTTAACCAATGTTATTTCTGTTCTGCTCC
CTATTCTAGTTAGCTTGGCCGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP033460.1\|AYU55216.1\|1512327_1512636_-\|DUF1033-family-protein	unknown	unknown	gnl\|CDD\|227043
CP033460.1\|AYU55213.1\|1509162_1510239_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|223858
CP033460.1\|AYU55199.1\|1492978_1494793_+\|oligoendopeptidase-F	unknown	unknown	gnl\|CDD\|341072
CP033460.1\|AYU55214.1\|1510240_1511503_+\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|143501
CP033460.1\|AYU55202.1\|1496403_1497333_-\|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl\|CDD\|223654
CP033460.1\|AYU55215.1\|1511774_1511975_-\|cold-shock-protein-CspA	unknown	unknown	gnl\|CDD\|224197
CP033460.1\|AYU55197.1\|1490816_1492304_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173855
CP033460.1\|AYU55209.1\|1505538_1506423_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
CP033460.1\|AYU55211.1\|1507172_1507892_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase	unknown	unknown	gnl\|CDD\|132571
CP033460.1\|AYU55205.1\|1499835_1500744_-\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|225543
CP033460.1\|AYU55201.1\|1495488_1496352_-\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|184584
CP033460.1\|AYU55206.1\|1500925_1502527_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|237894
CP033460.1\|AYU55207.1\|1503261_1504464_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
CP033460.1\|AYU55200.1\|1494841_1495489_-\|phosphate-signaling-complex-protein-PhoU	unknown	unknown	gnl\|CDD\|273990
CP033460.1\|AYU55203.1\|1497334_1498261_-\|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl\|CDD\|223646
CP033460.1\|AYU55210.1\|1506422_1507151_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
CP033460.1\|AYU55208.1\|1504546_1505536_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
CP033460.1\|AYU55198.1\|1492469_1492814_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378270
CP033460.1\|AYU55204.1\|1498432_1499368_-\|PstS-family-phosphate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270372
CP033460.1\|AYU55212.1\|1508002_1509166_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|224390

Protein	Function_ID	Function_description	E-value
CP033460.1\|AYU55216.1\|1512327_1512636_-\|DUF1033-family-protein	gnl\|CDD\|227043	COG4699, COG4699, Uncharacterized protein conserved in bacteria [Function unknown].	8.6579e-33
CP033460.1\|AYU55213.1\|1509162_1510239_+\|alanine-racemase	gnl\|CDD\|223858	COG0787, Alr, Alanine racemase [Cell envelope biogenesis, outer membrane].	1.55402e-82
CP033460.1\|AYU55199.1\|1492978_1494793_+\|oligoendopeptidase-F	gnl\|CDD\|341072	cd09609, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and is similar to oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid.	0
CP033460.1\|AYU55214.1\|1510240_1511503_+\|diaminopimelate-decarboxylase	gnl\|CDD\|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	1.17973e-164
CP033460.1\|AYU55202.1\|1496403_1497333_-\|phosphate-ABC-transporter-permease-PstA	gnl\|CDD\|223654	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	1.22924e-94
CP033460.1\|AYU55215.1\|1511774_1511975_-\|cold-shock-protein-CspA	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	4.47067e-32
CP033460.1\|AYU55197.1\|1490816_1492304_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173855	cd08490, PBP2_NikA_DppA_OppA_like_3, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	9.89794e-152
CP033460.1\|AYU55209.1\|1505538_1506423_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	8.80567e-133
CP033460.1\|AYU55211.1\|1507172_1507892_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase	gnl\|CDD\|132571	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.	2.08916e-127
CP033460.1\|AYU55205.1\|1499835_1500744_-\|RNA-binding-protein	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	4.12089e-110
CP033460.1\|AYU55201.1\|1495488_1496352_-\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|184584	PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional.	0
CP033460.1\|AYU55206.1\|1500925_1502527_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
CP033460.1\|AYU55207.1\|1503261_1504464_+\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
CP033460.1\|AYU55200.1\|1494841_1495489_-\|phosphate-signaling-complex-protein-PhoU	gnl\|CDD\|273990	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function. [Regulatory functions, Other, Transport and binding proteins, Anions].	1.06358e-64
CP033460.1\|AYU55203.1\|1497334_1498261_-\|phosphate-ABC-transporter-permease-subunit-PstC	gnl\|CDD\|223646	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	3.91225e-93
CP033460.1\|AYU55210.1\|1506422_1507151_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	2.51906e-91
CP033460.1\|AYU55208.1\|1504546_1505536_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	6.43456e-163
CP033460.1\|AYU55198.1\|1492469_1492814_-\|hypothetical-protein	gnl\|CDD\|378270	pfam09843, DUF2070, Predicted membrane protein (DUF2070). This is a family of Archaeal 7-TM proteins. There are 6 closely assembled TM-regions at the N-terminus followed by a long intracellular, from residues 220-590, highly conserved region, of unknown function, terminating with one more TM-region. The short 25 residue section between TMs 5 and 6 might lie on the outer surface of the membrane and be acting as a receptor (from TMHMM).	0.003529
CP033460.1\|AYU55204.1\|1498432_1499368_-\|PstS-family-phosphate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270372	cd13654, PBP2_phosphate_like_2, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.60858e-100
CP033460.1\|AYU55212.1\|1508002_1509166_+\|amidohydrolase	gnl\|CDD\|224390	COG1473, AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only].	2.13221e-129

>CP033460.1|AYU55206.1|1500925_1502527_+|ATP-binding-cassette-domain-containing-protein
MLQVTDVSLRFGDRKLFEDVNIKFTEGNCYGLIGANGAGKSTFLKILSGELDSQTGHVSMGKNERLAILKQDHFAYEDERVLDVVIKGHERLFEVMKEKDEIYMKPDFSDEDGIRAAELEGEFAEMNGWNAEADAATLLSGLGIPAELQDKKMSELENNQKVKVLLAQSLFGDPDVLLLDEPTNGLDIPAINWLEDFLINFENTVIVVSHDRHFLNNVCTHIADLDFGKIQVYVGNYDFWYQSSQLAQKMAQEQNKKKEEKIKELQDFVARFSANASKSKQATSRKKQLEKIELDDIQPSSRRYPFVKFTPEREIGNDLLFVENLSKTIDGEKVLDNISFTMDPNDKAVLVGDSEIAKTTLLKILAGEMEPDEGSVKWGVTTSQTYFPKDNSEYFDGVDMTLVDWLRQYAPEDEQTETFLRGFLGRMLFSGEEVKKKASVLSGGEKVRCMLSKMMLSSANVLLMDEPTNHLDLESITAVNDGLKSFKGSIIFTSHDFEFINTIANRVIDLNPEGAVSKEISYEEYLKETGVLS
>CP033460.1|AYU55205.1|1499835_1500744_-|RNA-binding-protein
MALRENDIIGSIEFLKVLGLNGSTYELEGPNGEKVKLNQSEVNEDDNLEVGEEYSFFIYPNRSGELFATQNMPDITTSKYDYVKVLKTDRDGAKVDAGLPREVLIPWEDLPKIKSLWPQNGDYVLATLRIDSEKQMFARLATETIVSQMYTPVNNDEMQNKMIEARPYRVLKVGSFLLSKDGYKIFVHESERKSEPRLGELVEIRVIGHNEKGELNGSFLPFAHERLDEDGQVVFDLLVEYDGELPFWDKSSPEAIKEVFNMSKGAFKRAIGHLYKRKIIDIETGKIRLTKKGEALAASENE
>CP033460.1|AYU55204.1|1498432_1499368_-|PstS-family-phosphate-ABC-transporter-substrate-binding-protein
MKKWQVLGTTVIGASLLLGACGNGGNGGGDSKESDAKGEVKGDGSSTVGPIVEVLNEKFNKKYPNITVSSATSGTGGGFEKFISGETDFSNASRPIKPEEKKKLDDKNVKFSDFKIAQDGVTIAVNKDNDFVKELTIDDLKKIYSGQAKTWKDVNPKYPAKEIKAFSPDQSHGTYDFFEEEVMNKEDIKAEKNADTNVIVQSVKNNKEGIGYFGYNFYEQNKDKLKEVKIKGKDGKAIEPTKKTIQDSSYALSRPLYIYTNDKKLKDNKAFGTFMKFVLEDKGKSAEKAGYVALPKKDYDDQLKKLKDLTK
>CP033460.1|AYU55203.1|1497334_1498261_-|phosphate-ABC-transporter-permease-subunit-PstC
MKSQGSIREMIANNQKKKKGLSDKIVPIILAIIAIISILTTIGILVTLLTETITFFTRVPLTEFLFTKDWNPFSSTPKYGIWALILGTLKVTFIATIFAVPVGLGAAIYLSEYASKRMRSIIKPILEILAGIPTIVFGFFALTFVTPMLRHVFPDLGSFNSISPGLVVGVMIIPLITSLSEDAMASVPNKIREGALGLGATKFEVSLKVVLPAAVSGIVASIVLAISRAIGETMIVSLAAGSTPDPSFSFTGSIQTMTGYIVQVATGDATFGSDIYYSIYAVGFTLFLFTLVMNLISQWISKRFREEY
>CP033460.1|AYU55202.1|1496403_1497333_-|phosphate-ABC-transporter-permease-PstA
MATTATTHPNENKTLVDQNKVEKNISSRITKNKVLKWVFFACTMIGLLVLAALLINTLIKGVPYLKPSFFTNFSSSMPQMAGIKGALVGTLWLMITIIPISIILGIGTAIYLEEYAKANAFTNFIKISISNLAGVPSVVFGLLGLTIFVRGMGIGALSLGQSILAAALTMSLLILPVIIVSSQEAIRAVPKSVREASYGLGGNKWQTIYKIVLPAALPGILTGFILALSRALGETAPLILIGIPTILLRLPSSIFDQFQAMPIQIYNWAKMPQEAFQHVASAGIIVLLILLLAMNGLAIFLRNKFSKKY
>CP033460.1|AYU55201.1|1495488_1496352_-|phosphate-ABC-transporter-ATP-binding-protein
METVKNKKEQETNDQPIKVERQTEKTPQERKQEDAKKDVVYSTQNLDLWYGENHALKNINLDILENNVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTAGKILYRGNDIFSSKQSVEKLRTNVGMVFQQPNPFPKSIYDNITYGPKIHGIKDKKTLDQIVEKSLRGAAIWDELKDRLNENAYGLSGGQQQRVCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKEQYSIIMVTHNMQQAARVSDKTAFFLNGYVNEYDDTDKLFSNPSDKQTEDYISGRFG
>CP033460.1|AYU55200.1|1494841_1495489_-|phosphate-signaling-complex-protein-PhoU
MTVIRQHYEEQLKDLIRDLRALGVKVYYSIECAVVSLSKEDRNYARQVIKRDLDINQLEDEINEKVIMLITKQQPIATDLRMMIAALKIASEFERIGDNAASIAKIRKRVKITDHYILTRLKTMGNLALLMLKDLDTAFRNKDVTLILEIIERDKDIDDLYKDIVNTTYLIDNDPFVAGQAHLAARQLERMGDHIANIAENIYYYITGETYESYV
>CP033460.1|AYU55199.1|1492978_1494793_+|oligoendopeptidase-F
MSQGLPLRKDIPEQEKWDLSDLFQSDEVFYQTLEEVFKNTENFNHQYAGQLNTVEKVKAALPELSEILIQVDRLGNYAEMRYSVDTTDEAGQKLSAKLSTSYGKIASNLAFVESEILALSDSQLDQLIAETPYPHYLKKLKQRKPHQLSYEVEKTLAALSPTFSAAYDMYGITKMLDIHFEAFEVDNQQYPLDYATFENEYEDNPDTEFRRKSFRYFSDALRQYQNTTAAIYNTHVQQEKIEADLRGYDSVIDYLLEEQEVTREMYDRQIDVIMSELAPIMQRYATLLKEVHGLEKMKFEDLKISIDPSYEPEISVEDSKEYIFNALKILGDDYLQMVQDAYEDRWIDFAQNKGKETGAYCASPFASHSYVFISWTGKMNETFVLAHELGHAGHFNLAQSHQNFLESEASMYFVEAPSTMNEMLMSNYLFESSDDPKFKRWVIGSIISRTYYHNMVTHLLEATYQREVYRLVDQGESLTAAKLNHITRKVYQDFFGDAVEITEGAELTWMRQPHYYMGLYSYTYSAGLTIGTVMSQRIKNEGQPAVEDWLNTLKAGGSQSPVELAETAGIDITTDAPLRETISYIGSLVDELEVLTKEIDNETK
>CP033460.1|AYU55198.1|1492469_1492814_-|hypothetical-protein
MTIFDMPNYLWISVIAVLVVTAFGGLALSKWVAPAIATFIILGVLAFFIPNFEKITYQPLLGYAAFMAIISLIESFLIWYFTRGWRRRRLEKRLAKAERQADDRQERLQRHNRK
>CP033460.1|AYU55197.1|1490816_1492304_-|ABC-transporter-substrate-binding-protein
MKKIIYSTAATTLLLAGCSNGGNQHNQADNLNIELPLKTNTLAPYDTDVPVSIGAAETLFKTSSEGKIQPYLVKSYQQPADDTLKLTLKDNIKFQNGHRLTGEAVKNSLEKGLKDSDLLKATLPIQSIQASGQDVTIKTKGAFPELVSELASPFTAIYDTHAKTDVKKTPVGTGPYVIKDFKRSQKIDLNQNKDYWQGKPKLEHLAVTFNEDGSSRTDHVLSGKTDITTNVPVDKIKSVKDSDKADLKATSGFRTSLLLYNHTSPKMTKEDREALDNIINRDQITSKIADNYAKPATGPFNTKLDFIQDKKVAKQNIEKAKKLMEKAGYSKKHPLTINVSSYSGRPELTKIAQVIQSDAKKAHINIKIQNVDDIEGFLKNKKDWDASMYSFGTIPRGDTGYFFNMAYKNDGAVNKGDYHNQKVDHLIDELNHTVDKNKRHALTNEILEVSKKDIPNSYITYNDQIDAINKDVQNFKVTPEGIYLIDYKVDKQKHD
>CP033460.1|AYU55207.1|1503261_1504464_+|aspartate-kinase
MKRSVLKFGGSSVSDFTKIKNIAEMLKDRIENGEQLIVVVSAMGKTTDQLMENVAALTAEPKQQELALLLTTGEQQTVSYLSMILNDIGVNAKAMTGYQAGIKTVGHHLKSRIAEINPETFDKAFETNDVLVVAGFQGINEEFELTTLGRGGSDTTAVALAAANQTPCEIYTDVDGVYATDPRVYKDAKRLSIVSYEEMMEMSALGAGVLETRSVELANNYNIPLYLGRTLSNVKGTWIMSQTEILEKKAVTGVALDTHMMHVTISYPLSDNQLLTALFTELEEGQVNVDMISQIVNLDGLQLSFSIKDTDLTQIKGILEKLSESYKALDYNLNDEYVKISLIGSGMRDMSGVASKAFISLINAGIPFYQTTTSEISISYVIDAKNGERAVEELYQAFDI
>CP033460.1|AYU55208.1|1504546_1505536_+|aspartate-semialdehyde-dehydrogenase
MTKLAIVGATGLVGRKMLETVDRKNIPFDELVLFSSPKSAGTEIEYQGKTYTVQELTDEAASEHFDYVLMSAGGGTSAHFSPIFEEAGAIVIDNSSQWRMHEDIDLVVPEVNEPKFTRGIIANPNCSTIQSVVPLKPLEDQFGLKRVAYTTYQAVSGSGVAGREDLLNGEKGEAPKAYPHPIYNNVLPHIDVFLENGYTKEEQKMIDETRKILNLPDLKVTATCVRVPVQDSHSVEMDVTLDKPATVKEIQDLFANDDRVVLVDNPENNEYPLAINSTGKDEVFVGRIRKDDSLENTFHIWVTSDNLLKGAALNTVQILEQVLSLKGVS
>CP033460.1|AYU55209.1|1505538_1506423_+|4-hydroxy-tetrahydrodipicolinate-synthase
MSRLFEGVGVALTTPFTNNEVDYEALKRHVDYLIDNNIQSIIVNGTTAENPTLSDEEKDEVLKAVVNQVDGRITVIAGTGTNATKKSLEASLRAKEIGADAIMLITPYYNKTSQRGLIAHFTTIADAVGLPVILYNVPSRTNMTIDVETMVELAKNPFIVAIKDATNDFDYHNKLKERLDLSEFSLYSGNDDNVVRYFAEGGNGVISVVANAIPGDFQALYEKAKRGESIDKDFEPISRLLNALSVDVNPIPIKALTAVEGFGNYEVRLPLVTLEEADRKQLEEAYAKYKAGEL
>CP033460.1|AYU55210.1|1506422_1507151_+|4-hydroxy-tetrahydrodipicolinate-reductase
MKILLIGYGAMNQRVARLAEEEGHEITGIIVPDKDNDYPYPSFDRIADAKEADVAIDFSNPELLLPLLDEDFDLPLVVATTGEKEKITAKLEELSQRMPVFFSANMSYGIHVLTKLLEVAVPLLEGYDIELIEAHHNKKVDAPSGTLVKLYDVIKDLKENVNPVYDRHEKNEKRQPDDIGISAIRGGTIVGEHDVLFAGVDETIELTHRAQSKDIFANGALKAAERLVKKPNGYYNFDNINN
>CP033460.1|AYU55211.1|1507172_1507892_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase
MVKDFSAEEIIQYISDAKKSTPLKVYVNGVLGQISFPENFKVFGSENSKVIFCEASDWDTFYNENKNYIEEVEIEMDRRNSAIPLKDLRNTNARIEPGAFIREHAVIEDGAVVMMGATINIGAVIGEGTMIDMNATLGGRATTGKNVHVGAGAVLAGVIEPPSASPVVIEDNVLIGANAVILEGVRVGEGAIVAAGAIVTQDVPAGAVVAGTPAKVIKQTSEVEDSKREIVSALRKLND
>CP033460.1|AYU55212.1|1508002_1509166_+|amidohydrolase
MTQSELEFVTQHRRHLHQHPELSFQEHETTQHIIELLEELEIPYERPLETGVIAYLAGNGSHTVAFRADIDALPIQEQNDIEFKSSKPNVMHACGHDGHTTALLLFVKRCKALADLGKLPQNVVFIFQPAEETGGGANHLIKTGAFEDYSIEAVFGIHVMPFNDEGTVTLLNEEITASATEYRFFLEGQSSHVANKEQGHSCGEGLQHILNQVSTIQQYHLNGLQRNIVHIGRFEAGEAINTVPSHGYLEGTIRTYDTEDLQVVKDQMTKIAQSVQLLFGVNCEVKFEEGYPPTYNDPNLHDEVVNALHQADFKVVELDKPYLFGEDFSFYSQLAPSYFVFVGIRNEEKDWVHGLHTPKLNFDESQLIRVADYYENLLFQYGQEDES
>CP033460.1|AYU55213.1|1509162_1510239_+|alanine-racemase
MTAIWSVDKKKFIENAQQVKAQQNLMAVVKNNAYNYGLDFSVEAFQEAGIDTFSTTSLKEAVRIREIAPEATIFLMNAVYDFETVRNNEIHMTLPSLNYYYQYKEDLAGIHVHLEFENLLHRSGLRNLEEIKEVLQDYSNNSSHKKMIISGLWTHFGYADEFDVPEYEIEKEAWLNIVNTLLEDGYEFEMIHAQNSAAFYREGQELLPHHTHGRVGIALYGSRPYSSLSESQIHQSLTVKGNVIQVRDVNKGEYCGYSFAYEVESDHSKLAVVDIGYGDGVLRARAQHEAIINGKRYPIKALMMSHMFVAVDDSVTAEDEVILYNEDMRIDEYTFKGVGANSEQLSALNHDSLIKEIR
>CP033460.1|AYU55214.1|1510240_1511503_+|diaminopimelate-decarboxylase
MVVEYKNGELTMGGTSLKMIAQSFGTPTIVYDEDQIRNQMRRYKEAFDKSGINYNISYASKAFTCIQMVKLVQEEGLDLDVVSEGELYTALEAGYDASHIHFHGNNKTKHEIQYALENKIGYFVIDSLEEIELIDKYASETVDVVLRVNPGVEAHTHEFIQTGQEDSKFGLSIKHGLADKAIHKINSSKRLHLKGIHFHIGSQIEGTDAMIKTAEIVIKWLKELNLEVELLNIGGGFGIHYVEGDVSFPIETGIKEITDALKDISKNNDYPLPTIGIEPGRSIVGEAGVTLYEVGTIKEIPGINKYVSIDGGMSDHIRTALYGAQYEALLVNREEPANETVTISGKLCESGDIIARDVRLPESVHRGDYLAILSTGAYHYSMASNYNQMQKPSVFFIQNGKAREVIKRQSLRQLIINDTK
>CP033460.1|AYU55215.1|1511774_1511975_-|cold-shock-protein-CspA
MKQGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQEGYKSLEEGQAVEFEVVEGDRGPQAANVVKL
>CP033460.1|AYU55216.1|1512327_1512636_-|DUF1033-family-protein
MWTVNKIRADYEGWWLFDDWKELITEQYQFTSYDEMIEKYKQLICWSKLKYDNFVKGKYNIYAFYNNCDMKFCVDCDEDMQIFYSFIVLYNEEVYYDLPIID

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP033460_5	5.1\|1502658\|47\|CP033460\|CRISPRCasFinder	1502658-1502704	47	CP033460.1	70073-70119	0	1.0
CP033460_5	5.1\|1502658\|47\|CP033460\|CRISPRCasFinder	1502658-1502704	47	CP033460.1	824533-824579	1	0.979
CP033460_5	5.1\|1502658\|47\|CP033460\|CRISPRCasFinder	1502658-1502704	47	CP033460.1	2096064-2096110	2	0.957

1. spacer 5.1|1502658|47|CP033460|CRISPRCasFinder matches to position: 70073-70119, mismatch: 0, identity: 1.0

gcagaacgacgaaataattttaaccaatgttatttctgttctgctcc	CRISPR spacer
gcagaacgacgaaataattttaaccaatgttatttctgttctgctcc	Protospacer
***********************************************

2. spacer 5.1|1502658|47|CP033460|CRISPRCasFinder matches to position: 824533-824579, mismatch: 1, identity: 0.979

gcagaacgacgaaataattttaaccaatgttatttctgttctgctcc	CRISPR spacer
gcagaacgacgaaataatttgaaccaatgttatttctgttctgctcc	Protospacer
******************** **************************

3. spacer 5.1|1502658|47|CP033460|CRISPRCasFinder matches to position: 2096064-2096110, mismatch: 2, identity: 0.957

gcagaacgacgaaataattttaaccaatgttatttctgttctgctcc	CRISPR spacer
gcagaacgacgaaataatttgaaccaatgttattactgttctgctcc	Protospacer
******************** ************* ************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP033460_2	2.2\|728761\|27\|CP033460\|CRISPRCasFinder	728761-728787	27	NZ_CP021216	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence	35185-35211	6	0.778
CP033460_2	2.2\|728761\|27\|CP033460\|CRISPRCasFinder	728761-728787	27	NC_010865	Sinorhizobium meliloti plasmid pSmeSM11b, complete sequence	170706-170732	6	0.778
CP033460_2	2.3\|728830\|30\|CP033460\|CRISPRCasFinder	728830-728859	30	MG649966	Vibrio virus Ceto, complete genome	42433-42462	7	0.767
CP033460_2	2.3\|728830\|30\|CP033460\|CRISPRCasFinder	728830-728859	30	NC_042094	Vibrio phage Ceto, complete genome	42433-42462	7	0.767
CP033460_2	2.5\|729047\|31\|CP033460\|CRISPRCasFinder	729047-729077	31	NZ_KM276081	Staphylococcus hyicus strain 1211 plasmid pSWS1211, complete sequence	83-113	7	0.774
CP033460_2	2.5\|729047\|31\|CP033460\|CRISPRCasFinder	729047-729077	31	NZ_KM276080	Staphylococcus equorum strain 961 plasmid pSWS961, complete sequence	83-113	7	0.774
CP033460_2	2.5\|729047\|31\|CP033460\|CRISPRCasFinder	729047-729077	31	NC_023385	Staphylococcus aureus plasmid pSWS2889, strain MRSA ST398, isolate 1110902889	83-113	7	0.774
CP033460_2	2.3\|728830\|30\|CP033460\|CRISPRCasFinder	728830-728859	30	NZ_CP014328	Halocynthiibacter arcticus strain PAMC 20958 plasmid unnamed, complete sequence	32952-32981	8	0.733
CP033460_2	2.5\|729047\|31\|CP033460\|CRISPRCasFinder	729047-729077	31	CP016074	Staphylococcus pseudintermedius strain 081661 plasmid unnamed1, complete sequence	2792-2822	8	0.742
CP033460_2	2.5\|729047\|31\|CP033460\|CRISPRCasFinder	729047-729077	31	NZ_CP047814	Staphylococcus aureus strain UP_1500 plasmid unnamed, complete sequence	2159-2189	8	0.742
CP033460_4	4.1\|1209229\|34\|CP033460\|CRISPRCasFinder	1209229-1209262	34	KY290955	Aeromonas phage 65.2, complete genome	207398-207431	8	0.765
CP033460_4	4.1\|1209229\|34\|CP033460\|CRISPRCasFinder	1209229-1209262	34	NC_015251	Aeromonas phage 65, complete genome	207439-207472	8	0.765
CP033460_1	1.1\|719455\|32\|CP033460\|PILER-CR,CRISPRCasFinder	719455-719486	32	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	1689411-1689442	9	0.719

1. spacer 2.2|728761|27|CP033460|CRISPRCasFinder matches to NZ_CP021216 (Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence) position: , mismatch: 6, identity: 0.778

tgatacatgcgaacggtgttatattga	CRISPR spacer
agcgcaatgcgaacggtgttatattta	Protospacer
 *    ******************* *

2. spacer 2.2|728761|27|CP033460|CRISPRCasFinder matches to NC_010865 (Sinorhizobium meliloti plasmid pSmeSM11b, complete sequence) position: , mismatch: 6, identity: 0.778

tgatacatgcgaacggtgttatattga	CRISPR spacer
agcgcaatgcgaacggtgttatattta	Protospacer
 *    ******************* *

3. spacer 2.3|728830|30|CP033460|CRISPRCasFinder matches to MG649966 (Vibrio virus Ceto, complete genome) position: , mismatch: 7, identity: 0.767

aaacggattgaccttttttatcaaagtaca	CRISPR spacer
gaaccggttgaccttttttatcaaactcag	Protospacer
.*** *.****************** *  .

4. spacer 2.3|728830|30|CP033460|CRISPRCasFinder matches to NC_042094 (Vibrio phage Ceto, complete genome) position: , mismatch: 7, identity: 0.767

aaacggattgaccttttttatcaaagtaca	CRISPR spacer
gaaccggttgaccttttttatcaaactcag	Protospacer
.*** *.****************** *  .

5. spacer 2.5|729047|31|CP033460|CRISPRCasFinder matches to NZ_KM276081 (Staphylococcus hyicus strain 1211 plasmid pSWS1211, complete sequence) position: , mismatch: 7, identity: 0.774

gtagatttgttgttcttatttactcggatca	CRISPR spacer
atagatttcttgttcttttttactcataaaa	Protospacer
.******* ******** *******. *  *

6. spacer 2.5|729047|31|CP033460|CRISPRCasFinder matches to NZ_KM276080 (Staphylococcus equorum strain 961 plasmid pSWS961, complete sequence) position: , mismatch: 7, identity: 0.774

gtagatttgttgttcttatttactcggatca	CRISPR spacer
atagatttcttgttcttttttactcataaaa	Protospacer
.******* ******** *******. *  *

7. spacer 2.5|729047|31|CP033460|CRISPRCasFinder matches to NC_023385 (Staphylococcus aureus plasmid pSWS2889, strain MRSA ST398, isolate 1110902889) position: , mismatch: 7, identity: 0.774

gtagatttgttgttcttatttactcggatca	CRISPR spacer
atagatttcttgttcttttttactcataaaa	Protospacer
.******* ******** *******. *  *

8. spacer 2.3|728830|30|CP033460|CRISPRCasFinder matches to NZ_CP014328 (Halocynthiibacter arcticus strain PAMC 20958 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

aaacggattgaccttttttatcaaagtaca	CRISPR spacer
gcaattgttgatcttttttatcaacgtaca	Protospacer
. *   .****.************ *****

9. spacer 2.5|729047|31|CP033460|CRISPRCasFinder matches to CP016074 (Staphylococcus pseudintermedius strain 081661 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

gtagatttgttgttcttatttactcggatca	CRISPR spacer
aaagattcgttgttcttttttactcataaaa	Protospacer
. *****.********* *******. *  *

10. spacer 2.5|729047|31|CP033460|CRISPRCasFinder matches to NZ_CP047814 (Staphylococcus aureus strain UP_1500 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

gtagatttgttgttcttatttactcggatca	CRISPR spacer
aaagattcgttgttcttttttactcataaaa	Protospacer
. *****.********* *******. *  *

11. spacer 4.1|1209229|34|CP033460|CRISPRCasFinder matches to KY290955 (Aeromonas phage 65.2, complete genome) position: , mismatch: 8, identity: 0.765

attctcaactcttttgatattgaacacaaacatg	CRISPR spacer
atacgtgattctttggatattgaacaaaaacatt	Protospacer
** * ..*.***** *********** ******

12. spacer 4.1|1209229|34|CP033460|CRISPRCasFinder matches to NC_015251 (Aeromonas phage 65, complete genome) position: , mismatch: 8, identity: 0.765

attctcaactcttttgatattgaacacaaacatg	CRISPR spacer
atacgggattctttggatattgaacaaaaacatt	Protospacer
** *  .*.***** *********** ******

13. spacer 1.1|719455|32|CP033460|PILER-CR,CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 9, identity: 0.719

cgcttgcggtagaaatgaatttctgcatgtcc	CRISPR spacer
ttaaagcggaagaaatgaatttctgcatatta	Protospacer
.    **** ******************.*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

802071 : 811277

uncultured_Caudovirales_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU54553.1\|802071_803592_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	7.5e-74	37.1
AYU54554.1\|803750_804254_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	6.0e-52	65.6
AYU54555.1\|804256_805147_-	DMT family transporter	NA	NA	NA	NA
AYU54556.1\|806029_806422_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	3.0e-43	67.7
AYU54557.1\|806393_808499_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	87.3
AYU54558.1\|808637_809615_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	3.5e-173	93.5
AYU54559.1\|809704_809896_+	hypothetical protein	NA	NA	NA	NA
AYU56352.1\|810308_811277_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	2.4e-134	77.5

DBSCAN-SWA_2

891649 : 940918

uncultured_Caudovirales_phage(56.9%)

terminase,protease,portal,tail,capsid,holin,head,integrase

attL 885055:885070|attR 932833:932848

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
885055:885070	attL	NA	NA	NA	NA
AYU54634.1\|891649_892888_+	cysteine desulfurase	Q2XUY6	environmental_halophage	6.7e-105	44.6
AYU54635.1\|892877_893348_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA
AYU54636.1\|893562_894960_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
AYU54637.1\|895027_896077_-\|integrase	site-specific integrase	A0A2H4J4I8	uncultured_Caudovirales_phage	1.8e-183	88.5
AYU54638.1\|896213_896831_+	ATPase	A0A2I6PD89	Staphylococcus_phage	4.3e-60	59.4
AYU54639.1\|897026_897209_-	hypothetical protein	A0A0H3U4Z4	Staphylococcus_phage	3.9e-14	66.7
AYU54640.1\|897289_898081_-	hypothetical protein	A0A1W6JQG6	Staphylococcus_phage	3.0e-05	43.3
AYU54641.1\|898134_898773_-	helix-turn-helix domain-containing protein	U3PBN8	Staphylococcus_phage	4.4e-100	82.1
AYU54642.1\|898966_899215_+	XRE family transcriptional regulator	U3PCY2	Staphylococcus_phage	8.6e-28	83.6
AYU54643.1\|899229_899982_+	Rha family transcriptional regulator	A0A2H4J8U5	uncultured_Caudovirales_phage	3.9e-116	84.3
AYU54644.1\|899996_900182_+	hypothetical protein	NA	NA	NA	NA
AYU54645.1\|900421_900676_+	hypothetical protein	A0A2H4J5J2	uncultured_Caudovirales_phage	8.5e-31	87.5
AYU54646.1\|900689_900935_-	hypothetical protein	A0A2H4JD95	uncultured_Caudovirales_phage	4.6e-34	92.6
AYU54647.1\|901000_901219_+	hypothetical protein	A0A1J0MG48	Staphylococcus_phage	2.6e-20	70.8
AYU54648.1\|901234_901447_+	hypothetical protein	Q4ZCA4	Staphylococcus_virus	4.6e-22	76.1
AYU54649.1\|901542_901779_+	DUF2483 domain-containing protein	A0A2H4J633	uncultured_Caudovirales_phage	3.5e-23	73.3
AYU54650.1\|901771_902398_+	DUF1071 domain-containing protein	A1BTZ3	Staphylococcus_virus	1.7e-109	93.8
AYU54651.1\|902390_902807_+	single-stranded DNA-binding protein	I6SN68	Staphylococcus_virus	1.0e-65	92.1
AYU54652.1\|902821_903502_+	hypothetical protein	A0A2H4J565	uncultured_Caudovirales_phage	4.8e-105	79.6
AYU54653.1\|903488_903791_+	hypothetical protein	NA	NA	NA	NA
AYU54654.1\|903795_904545_+	DnaD domain protein	A9CR67	Staphylococcus_phage	1.2e-72	56.6
AYU54655.1\|904544_904901_+	hypothetical protein	H9A0Z2	Staphylococcus_phage	1.5e-25	51.8
AYU54656.1\|904893_906126_+	damage-inducible protein	A0A2H4JFD2	uncultured_Caudovirales_phage	5.6e-144	63.1
AYU54657.1\|906122_906353_+	hypothetical protein	A0A2H4J7L3	uncultured_Caudovirales_phage	9.4e-13	47.8
AYU54658.1\|906327_906516_+	hypothetical protein	NA	NA	NA	NA
AYU54659.1\|906518_907040_+	hypothetical protein	Q4ZC91	Staphylococcus_virus	3.5e-15	28.8
AYU54660.1\|907040_907538_+	DUF3310 domain-containing protein	A0A2R3ZXJ2	Staphylococcus_phage	1.7e-11	50.7
AYU54661.1\|907530_907983_+	hypothetical protein	NA	NA	NA	NA
AYU54662.1\|908164_908359_+	hypothetical protein	Q4ZC85	Staphylococcus_virus	2.4e-25	84.1
AYU54663.1\|908355_908601_+	hypothetical protein	A0A2H4JHN5	uncultured_Caudovirales_phage	1.4e-17	51.9
AYU54664.1\|908600_908873_+	XRE family transcriptional regulator	A0A2H4JBP6	uncultured_Caudovirales_phage	7.5e-09	39.3
AYU54665.1\|908865_909165_+	hypothetical protein	U3PBR4	Staphylococcus_phage	1.1e-42	86.9
AYU54666.1\|909209_909431_+	XRE family transcriptional regulator	A0A2H4JCF9	uncultured_Caudovirales_phage	3.8e-11	54.3
AYU54667.1\|909427_909613_+	transcriptional regulator	Q4ZC79	Staphylococcus_virus	1.4e-11	58.2
AYU54668.1\|909612_910119_+	hypothetical protein	A0A2H4J5F6	uncultured_Caudovirales_phage	3.3e-34	53.3
AYU54669.1\|910122_910305_+	hypothetical protein	Q4ZC78	Staphylococcus_virus	8.8e-06	55.2
AYU54670.1\|910301_910772_+	Holliday junction resolvase RecU	H9A0M5	Staphylococcus_phage	3.5e-46	57.1
AYU54671.1\|910821_911268_+	transcriptional regulator	A0A2H4JB30	uncultured_Caudovirales_phage	2.4e-57	70.9
AYU56359.1\|911923_912286_+	HNH endonuclease	H9A108	Staphylococcus_phage	4.6e-62	94.9
AYU54672.1\|912450_912921_+\|terminase	phage terminase small subunit P27 family	H9A110	Staphylococcus_phage	6.7e-82	98.1
AYU54673.1\|915126_915321_+	hypothetical protein	A0A2H4J4I4	uncultured_Caudovirales_phage	4.5e-24	95.3
AYU54674.1\|915320_916556_+\|portal	phage portal protein	H9A113	Staphylococcus_phage	9.3e-232	98.5
AYU54675.1\|916542_917100_+\|head,protease	HK97 family phage prohead protease	A0A2H4JBY8	uncultured_Caudovirales_phage	2.5e-99	96.8
AYU54676.1\|917141_918503_+\|capsid	phage major capsid protein	A0A2H4J7I3	uncultured_Caudovirales_phage	3.2e-164	94.3
AYU54677.1\|918521_918863_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JB77	uncultured_Caudovirales_phage	3.1e-52	91.1
AYU54678.1\|918852_919182_+	hypothetical protein	A0A2H4JGE5	uncultured_Caudovirales_phage	1.3e-52	89.9
AYU54679.1\|919178_919583_+	hypothetical protein	A0A2H4JF04	uncultured_Caudovirales_phage	1.9e-69	98.5
AYU54680.1\|919587_919992_+	hypothetical protein	A0A2H4JH09	uncultured_Caudovirales_phage	1.8e-67	92.5
AYU54681.1\|920004_920631_+\|tail	phage tail protein	A0A2H4JH93	uncultured_Caudovirales_phage	7.3e-108	94.7
AYU54682.1\|920649_920835_+	hypothetical protein	A0A2H4J6A9	uncultured_Caudovirales_phage	9.5e-24	91.8
AYU54683.1\|920898_921261_+	hypothetical protein	A0A2H4J9U5	uncultured_Caudovirales_phage	1.1e-58	96.7
AYU54684.1\|921474_926154_+\|tail	phage tail tape measure protein	A0A2H4JDT7	uncultured_Caudovirales_phage	0.0e+00	73.7
AYU54685.1\|926156_926987_+\|tail	phage tail family protein	A0A2H4JBE0	uncultured_Caudovirales_phage	8.1e-155	93.8
AYU54686.1\|926996_929528_+	hypothetical protein	A0A2H4JGI7	uncultured_Caudovirales_phage	0.0e+00	93.7
AYU54687.1\|929534_930059_+	hypothetical protein	A0A2H4JEI3	uncultured_Caudovirales_phage	2.7e-55	55.2
AYU54688.1\|930073_932137_+	hypothetical protein	A0A2H4JFY2	uncultured_Caudovirales_phage	7.6e-279	89.7
AYU54689.1\|932136_933564_+	DUF2479 domain-containing protein	A0A2H4J9N1	uncultured_Caudovirales_phage	1.4e-154	71.4
932833:932848	attR	NA	NA	NA	NA
AYU54690.1\|933575_934010_+	hypothetical protein	A0A2H4J9L3	uncultured_Caudovirales_phage	3.7e-50	94.2
AYU54691.1\|934013_934169_+	XkdX family protein	A0A2H4JD72	uncultured_Caudovirales_phage	8.8e-23	98.0
AYU54692.1\|934205_934628_+	hypothetical protein	A0A2H4JID2	uncultured_Caudovirales_phage	1.1e-54	72.9
AYU54693.1\|934614_935013_+	hypothetical protein	A0A2H4JCM1	uncultured_Caudovirales_phage	3.0e-59	89.4
AYU56360.1\|935070_935544_+\|holin	phage holin	U3PJ27	Staphylococcus_phage	3.9e-69	80.9
AYU54694.1\|935533_936967_+	CHAP domain-containing protein	A0A1W6JQB6	Staphylococcus_phage	4.2e-244	86.8
AYU54695.1\|937626_938277_+	zinc-ribbon domain-containing protein	NA	NA	NA	NA
AYU54696.1\|938287_940918_+	AAA family ATPase	S5MNT2	Brevibacillus_phage	1.6e-42	35.9

DBSCAN-SWA_3

1109777 : 1120764

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU54847.1\|1109777_1110635_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	8.4e-38	38.4
AYU54848.1\|1110843_1111326_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.8e-22	45.3
AYU54849.1\|1111312_1112440_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AYU54850.1\|1112439_1113144_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	2.7e-50	45.9
AYU54851.1\|1113143_1113410_+	phosphoribosylformylglycinamidine synthase subunit PurS	A0A1B1IU82	uncultured_Mediterranean_phage	2.9e-05	35.0
AYU54852.1\|1113409_1114081_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AYU54853.1\|1114073_1116263_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.9e-139	39.8
AYU54854.1\|1116241_1117663_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.5e-47	31.0
AYU54855.1\|1117667_1118705_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.2e-67	43.2
AYU54856.1\|1118701_1119268_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.9e-30	39.7
AYU54857.1\|1119285_1120764_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	Q58MG4	Prochlorococcus_phage	9.6e-74	48.2

DBSCAN-SWA_4

1203287 : 1219280

uncultured_Caudovirales_phage(55.56%)

coat,terminase,integrase

attL 1200183:1200197|attR 1221140:1221154

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1200183:1200197	attL	NA	NA	NA	NA
AYU54939.1\|1203287_1203905_+	ATPase	A0A2I6PD89	Staphylococcus_phage	3.6e-59	58.9
AYU54940.1\|1203901_1204087_-	hypothetical protein	NA	NA	NA	NA
AYU54941.1\|1205542_1205980_+	DUF3102 domain-containing protein	A0A2H4JAH5	uncultured_Caudovirales_phage	1.8e-36	67.8
AYU54942.1\|1206459_1206786_-	sigma-70 family RNA polymerase sigma factor	A0A2H4JB14	uncultured_Caudovirales_phage	8.6e-44	84.4
AYU54943.1\|1206782_1207100_-	hypothetical protein	A0A2H4JEA5	uncultured_Caudovirales_phage	2.0e-45	87.6
AYU54944.1\|1207096_1207630_-\|coat	spore coat protein	A0A2H4JB26	uncultured_Caudovirales_phage	6.7e-86	88.7
AYU54945.1\|1207690_1208164_-\|terminase	phage terminase small subunit P27 family	A0A2H4JB21	uncultured_Caudovirales_phage	8.3e-72	91.7
AYU54946.1\|1209884_1210343_-	hypothetical protein	A0A2H4JGU4	uncultured_Caudovirales_phage	1.1e-73	93.4
AYU54947.1\|1210355_1210976_-	hypothetical protein	A0A2H4JFF8	uncultured_Caudovirales_phage	3.5e-86	81.1
AYU54948.1\|1210968_1211337_-	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	3.4e-28	55.7
AYU54949.1\|1211711_1212044_-	hypothetical protein	A0A2H4JHE6	uncultured_Caudovirales_phage	4.3e-43	82.2
AYU54950.1\|1212356_1212554_-	hypothetical protein	NA	NA	NA	NA
AYU54951.1\|1212822_1214487_-	DUF927 domain-containing protein	Q4ZE73	Staphylococcus_phage	7.3e-139	44.7
AYU54952.1\|1214491_1215349_-	mobile element-associated protein	A0A2H4JEH3	uncultured_Caudovirales_phage	1.5e-90	55.7
AYU54953.1\|1215435_1215735_-	DUF1474 family protein	A0A2H4JB50	uncultured_Caudovirales_phage	6.9e-32	65.7
AYU54954.1\|1215829_1216189_-	pathogenicity island protein	NA	NA	NA	NA
AYU54955.1\|1216191_1216395_-	pathogenicity island protein	A0A1W6JQF4	Staphylococcus_phage	2.0e-22	70.1
AYU54956.1\|1216411_1216657_-	DUF771 domain-containing protein	NA	NA	NA	NA
AYU54957.1\|1216670_1217312_-	phage repressor protein	A0A1W6JPC3	Staphylococcus_phage	3.3e-87	78.4
AYU54958.1\|1217343_1217559_-	XRE family transcriptional regulator	Q9ZXD1	Bacillus_phage	8.0e-06	43.5
AYU54959.1\|1217694_1218216_+	XRE family transcriptional regulator	A0A1W6JPB6	Staphylococcus_phage	9.9e-34	44.6
AYU54960.1\|1218224_1219280_+\|integrase	site-specific integrase	A0A0K1LKK4	Staphylococcus_phage	3.6e-67	41.3
1221140:1221154	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1580610 : 1589250

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU55283.1\|1580610_1581993_-	ATP-dependent DNA helicase RecQ	A0A0G2Y8K9	Acanthamoeba_polyphaga_mimivirus	4.6e-62	35.2
AYU55284.1\|1581995_1582949_-	hypothetical protein	NA	NA	NA	NA
AYU55285.1\|1583055_1583304_+	ferredoxin	A0A127AYY7	Bacillus_phage	2.0e-16	53.3
AYU55286.1\|1583491_1584040_-	ECF transporter S component	NA	NA	NA	NA
AYU55287.1\|1584420_1586172_-	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	5.3e-23	31.8
AYU55288.1\|1586152_1586875_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	3.5e-45	41.6
AYU55289.1\|1587196_1587934_-	rRNA pseudouridine synthase	NA	NA	NA	NA
AYU55290.1\|1587926_1588475_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.8e-08	31.0
AYU55291.1\|1588458_1589250_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.9e-07	25.4

DBSCAN-SWA_6

1830313 : 1861803

Staphylococcus_phage(92.59%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU55515.1\|1830313_1831570_+	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	1.7e-39	71.7
AYU55516.1\|1831626_1831944_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	7.8e-34	69.5
AYU55517.1\|1831964_1834379_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	85.4
AYU55518.1\|1834711_1835890_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	3.3e-162	74.2
AYU55519.1\|1836145_1837102_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	4.7e-66	83.1
AYU55520.1\|1837106_1837664_+	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	5.6e-59	61.1
AYU55521.1\|1837735_1838692_-	L-lactate dehydrogenase	NA	NA	NA	NA
AYU55522.1\|1838928_1839759_-	alpha/beta hydrolase	NA	NA	NA	NA
AYU55523.1\|1840014_1841010_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	3.7e-114	63.6
AYU55524.1\|1841076_1841538_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.1e-58	79.7
AYU55525.1\|1841570_1842752_-	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.9e-166	71.2
AYU55526.1\|1842767_1843400_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.5e-71	62.9
AYU55527.1\|1843406_1844456_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	7.7e-118	58.9
AYU55528.1\|1844867_1846349_-	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	1.3e-14	70.2
AYU55529.1\|1846481_1847327_-	autolysin	A0A1W6JNR1	Staphylococcus_phage	6.1e-41	41.3
AYU55530.1\|1847641_1847863_-	hypothetical protein	NA	NA	NA	NA
AYU55531.1\|1848071_1848566_+	RNA polymerase subunit sigma	A0A2H4PQT5	Staphylococcus_phage	7.0e-21	40.9
AYU55532.1\|1848567_1849011_+	hypothetical protein	NA	NA	NA	NA
AYU55533.1\|1848994_1849447_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	4.3e-17	51.0
AYU55534.1\|1849567_1850284_-	transaldolase	A0A127KLL7	Cyanophage	3.3e-19	36.0
AYU55535.1\|1850470_1850776_+	hypothetical protein	NA	NA	NA	NA
AYU55536.1\|1850845_1851217_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-38	65.3
AYU56381.1\|1851221_1851566_+	CrcB family protein	NA	NA	NA	NA
AYU55537.1\|1851621_1852545_-	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	2.3e-33	31.0
AYU55538.1\|1852554_1853397_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	8.3e-115	69.7
AYU55539.1\|1853531_1854431_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	4.7e-100	75.2
AYU55540.1\|1854527_1855724_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	5.5e-189	81.4
AYU55541.1\|1856110_1857703_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	3.8e-254	78.8
AYU55542.1\|1857844_1858615_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	2.1e-96	69.0
AYU55543.1\|1858598_1859072_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	3.3e-36	49.7
AYU55544.1\|1859161_1859410_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	2.3e-28	70.4
AYU55545.1\|1859400_1860411_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	5.1e-95	53.4
AYU55546.1\|1860414_1861803_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	6.7e-162	59.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP033460

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection