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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP033514 Vibrio cholerae strain E4 plasmid pVCR94, complete sequence 0 crisprs DEDDh,csa3 0 0 2 0
CP033515 Vibrio cholerae strain E4 chromosome 1, complete sequence 1 crisprs cas3,RT,DEDDh,DinG,csx1,WYL,csa3 0 1 5 0
CP033513 Vibrio cholerae strain E4 chromosome 2, complete sequence 0 crisprs cas3,csa3 0 0 0 0

Results visualization

1. CP033514
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 116310 : 149560 36 Escherichia_phage(50.0%) transposase NA
DBSCAN-SWA_2 154083 : 160569 10 Escherichia_phage(50.0%) transposase,integrase attL 144852:144864|attR 164142:164154
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP033515
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP033515_1 2710586-2710829 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP033515_1 1.1|2710635|37|CP033515|PILER-CR 2710635-2710671 37 NC_049942 Escherichia phage JLK-2012, complete sequence 23524-23560 4 0.892
CP033515_1 1.1|2710635|37|CP033515|PILER-CR 2710635-2710671 37 NC_021742 Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence 35428-35464 4 0.892

1. spacer 1.1|2710635|37|CP033515|PILER-CR matches to NC_049942 (Escherichia phage JLK-2012, complete sequence) position: , mismatch: 4, identity: 0.892

taggtcgccagttcgattccggcagccggcaccactt	CRISPR spacer
caggtcgccagttcgattccggtagccggcaccatat	Protospacer
.*********************.***********. *

2. spacer 1.1|2710635|37|CP033515|PILER-CR matches to NC_021742 (Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.892

taggtcgccagttcgattccggcagccggcaccactt	CRISPR spacer
taggtcaccagttcgattccggtagccggcaccaatc	Protospacer
******.***************.*********** *.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 654314 : 660931 7 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_2 1509532 : 1544866 34 Vibrio_phage(34.62%) NA NA
DBSCAN-SWA_3 2284549 : 2291742 9 Anguillid_herpesvirus(16.67%) NA NA
DBSCAN-SWA_4 2418904 : 2478314 49 uncultured_virus(37.5%) transposase,protease NA
DBSCAN-SWA_5 2621201 : 2628464 6 uncultured_Mediterranean_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage