CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026100	Caulobacter flavus strain RHGG3 chromosome, complete genome	1 crisprs	csa3,DEDDh,WYL,DinG,cas3	0	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP026100_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026100_1

3038794-3038899

Orphan

Consensus_repeat	Method
TTGCCAGGCTCCCCCATTTCCACATTGGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026100_1

>merge|CP026100|1|3038794-3038899|CRISPRCasFinder
TTGCCAGGCTCCCCCATTTCCACATTGGAAAGAGAGGAGGGAGCCGTCCACATTTCTGGAAAGTGGAGGGATTCTGTTGCCAGGCTCCCCCATTCCACATTGGAAG

>CP026100|1|1|3038794-3038899|CRISPRCasFinder
TTGCCAGGCTCCCCCATTTCCACATTGGAA	AGAGAGGAGGGAGCCGTCCACATTTCTGGAAAGTGGAGGGATTCTG
TTGCCAGGCTCCCCCATTCCACATTGGAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP026100.1\|AYV47292.1\|3043381_3043864_-\|damage-inducible-protein	unknown	unknown	gnl\|CDD\|334938
CP026100.1\|AYV47294.1\|3045361_3046246_+\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
CP026100.1\|AYV47293.1\|3044903_3045356_+\|hypothetical-protein	unknown	unknown	unknown
CP026100.1\|AYV47284.1\|3034225_3034618_-\|hypothetical-protein	unknown	unknown	unknown
CP026100.1\|AYV47288.1\|3038185_3038665_-\|stringent-starvation-protein-B	unknown	unknown	gnl\|CDD\|226335
CP026100.1\|AYV49587.1\|3043945_3044890_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
CP026100.1\|AYV47280.1\|3030026_3030278_-\|post-segregation-antitoxin-CcdA	unknown	unknown	gnl\|CDD\|377822
CP026100.1\|AYV47291.1\|3041301_3043107_-\|acetolactate-synthase-3-large-subunit	unknown	unknown	gnl\|CDD\|236380
CP026100.1\|AYV47283.1\|3033877_3034264_+\|RusA-family-crossover-junction-endodeoxyribonuclease	unknown	unknown	gnl\|CDD\|377564
CP026100.1\|AYV49585.1\|3030291_3031032_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226425
CP026100.1\|AYV49586.1\|3039300_3039525_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371572
CP026100.1\|AYV47296.1\|3047102_3047951_-\|protease-modulator-HflC	unknown	unknown	gnl\|CDD\|259803
CP026100.1\|AYV47295.1\|3046242_3046908_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223710
CP026100.1\|AYV47281.1\|3031133_3032525_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
CP026100.1\|AYV47285.1\|3034673_3036797_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|224594
CP026100.1\|AYV47287.1\|3037711_3038182_-\|thioesterase	unknown	unknown	gnl\|CDD\|239527
CP026100.1\|AYV47289.1\|3039800_3040697_-\|hypothetical-protein	unknown	unknown	unknown
CP026100.1\|AYV47290.1\|3040702_3041260_-\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
CP026100.1\|AYV47282.1\|3032660_3033815_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226749
CP026100.1\|AYV47286.1\|3036903_3037704_-\|peptidase-C13	unknown	unknown	gnl\|CDD\|366741

Protein	Function_ID	Function_description	E-value
CP026100.1\|AYV47292.1\|3043381_3043864_-\|damage-inducible-protein	gnl\|CDD\|334938	pfam02464, CinA, Competence-damaged protein. CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation. This Pfam family consists of putative competence-damaged proteins from the cin operon. Some members of this family have nicotinamide mononucleotide (NMN) deamidase activity.	7.6793e-44
CP026100.1\|AYV47294.1\|3045361_3046246_+\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	8.32768e-89
CP026100.1\|AYV47296.1\|3047102_3047951_-\|protease-modulator-HflC	gnl\|CDD\|259803	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflC (High frequency of lysogenization C). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another SPFH superfamily member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	1.80624e-100
CP026100.1\|AYV47288.1\|3038185_3038665_-\|stringent-starvation-protein-B	gnl\|CDD\|226335	COG3814, COG3814, Uncharacterized protein conserved in bacteria [Function unknown].	1.25091e-73
CP026100.1\|AYV49587.1\|3043945_3044890_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	1.85269e-125
CP026100.1\|AYV47280.1\|3030026_3030278_-\|post-segregation-antitoxin-CcdA	gnl\|CDD\|377822	pfam07362, CcdA, Post-segregation antitoxin CcdA. This family consists of several Enterobacterial post-segregation antitoxin CcdA proteins. The F plasmid-carried bacterial toxin, the CcdB protein, is known to act on DNA gyrase in two different ways. CcdB poisons the gyrase-DNA complex, blocking the passage of polymerases and leading to double-strand breakage of the DNA. Alternatively, in cells that overexpress CcdB, the A subunit of DNA gyrase (GyrA) has been found as an inactive complex with CcdB. Both poisoning and inactivation can be prevented and reversed in the presence of the F plasmid-encoded antidote, the CcdA protein.	1.22115e-17
CP026100.1\|AYV47291.1\|3041301_3043107_-\|acetolactate-synthase-3-large-subunit	gnl\|CDD\|236380	PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit; Validated.	0
CP026100.1\|AYV47283.1\|3033877_3034264_+\|RusA-family-crossover-junction-endodeoxyribonuclease	gnl\|CDD\|377564	pfam05866, RusA, Endodeoxyribonuclease RusA. This family consists of several bacterial and phage Holliday junction resolvase (RusA) like proteins. The RusA protein of Escherichia coli is an endonuclease that can resolve Holliday intermediates and correct the defects in genetic recombination and DNA repair associated with inactivation of RuvAB or RuvC.	1.89004e-14
CP026100.1\|AYV49585.1\|3030291_3031032_-\|AAA-family-ATPase	gnl\|CDD\|226425	COG3910, COG3910, Predicted ATPase [General function prediction only].	2.72232e-96
CP026100.1\|AYV49586.1\|3039300_3039525_-\|hypothetical-protein	gnl\|CDD\|371572	pfam11512, Atu4866, Agrobacterium tumefaciens protein Atu4866. Atu4866 is a protein with unknown function from Agrobacterium tumefaciens however the structure has been determined. Atu4866 adopts a streptavidin-like fold and has a beta-barrel/sandwich which is formed by eight antiparallel beta-strands. Atu4866 has a potential ligand-binding site where is has a stretch of conserved residues on the surface.	1.28388e-08
CP026100.1\|AYV47295.1\|3046242_3046908_+\|HAD-family-hydrolase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	5.94621e-55
CP026100.1\|AYV47281.1\|3031133_3032525_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
CP026100.1\|AYV47285.1\|3034673_3036797_-\|serine-hydrolase	gnl\|CDD\|224594	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms].	6.13249e-46
CP026100.1\|AYV47287.1\|3037711_3038182_-\|thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	8.03104e-30
CP026100.1\|AYV47282.1\|3032660_3033815_+\|hypothetical-protein	gnl\|CDD\|226749	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown].	1.07937e-50
CP026100.1\|AYV47290.1\|3040702_3041260_-\|acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	2.23477e-80
CP026100.1\|AYV47286.1\|3036903_3037704_-\|peptidase-C13	gnl\|CDD\|366741	pfam01650, Peptidase_C13, Peptidase C13 family. Members of this family are asparaginyl peptidases. The blood fluke parasite Schistosoma mansoni has at least five Clan CA cysteine peptidases in its digestive tract including cathepsins B (2 isoforms), C, F and L. All have been recombinantly expressed as active enzymes, albeit in various stages of activation. In addition, a Clan CD peptidase, termed asparaginyl endopeptidase or 'legumain' has been identified. This has formerly been characterized as a 'haemoglobinase', but this term is probably incorrect. Two cDNAs have been described for Schistosoma mansoni legumain; one encodes an active enzyme whereas the active site cysteine residue encoded by the second cDNA is substituted by an asparagine residue. Both forms have been recombinantly expressed.	1.1227e-09

>CP026100.1|AYV47288.1|3038185_3038665_-|stringent-starvation-protein-B
MARTPPTEDLMQYEAMAQDALRGVVKAALKKAAAPGGLPEPHHLYITFKTQAAGVSAPQDLLSKYPDEMTIILQHQYWDLAPGETFFSVTLKFGGQPKRLSIPYAAVTRFYDPSVQFALQFEAPEIEPAPVEPEPEPTPPATDGDEAPKIISLDQFRKK
>CP026100.1|AYV47287.1|3037711_3038182_-|thioesterase
MSDIASEETQTLTDEAILARFHASKNVPPSASTLGFRLTAVSQAERRIEIAFDARADLLANPMGQIQGGFVCAMLDECMSVAGLITSGMTHVVPTLEMKTSFLRPAMPGALRGVGRVVKWGRTVCFMEGELYDAEDRLLATSTGTALPTPFAKFKT
>CP026100.1|AYV47286.1|3036903_3037704_-|peptidase-C13
MVRTASVLIGLLLACLAIAPAHAEGPFERWAAVVVAGDYRAHSGGSTEAFDNARRDVSRSLTALGFPTPAQFSTRPRRYPSQGVAASEPKVIQSGLASAAEASPAGCLVYITSHGAPEGVVMGDKILRPQRLAAMVDGACPGRPSIVVVSACFSGVFVPALERDDRMILTAARPDRTSFGCGESDRYPYFDDCFLSEIGQARDFIALGRSVQACVARKELDTGMTPPSEPQMWIGPELRPLLPLYAFAKARKPAPASGAQPSPAGN
>CP026100.1|AYV47285.1|3034673_3036797_-|serine-hydrolase
MTLRLSSKVARCAAVVGIWLAGAGSATSQSTAPTAAIPTAPRPYAPAPTTAKPRTAPAVRAARPAAPAAAPQAAAPPVAPALPGVTPLPAPELEAFVDGFVRRSMNEDHIAGVTVSVVQNGQVVLKKGYGVASVSGGRRVDPDRTLFRIGSISKTFTWIALQNEIDAGRIRPDTPINVYLPEKLQVRDQGKKNPVRVRDLYNHTPGFEDRALGQLFERDERRIRPLDVYLRQERPNRVREPGVLPAYSNYGVALVGAALANTGAKPFEDLIAERVITPAGLTRTTFREPRAWRDDLPAPMAPALAADMAEGYRWTPLGLQAQPIEFIGQIAPAGSASSTAADMARYMTLLLNGGAIDGRTVFSARAAQAFRTPSYRPAAGAAGLNSGFQDIALPGNRRGFGHAGATLWFHSNMVIAPDLGLGVFVSVNTDTGQSLPATLPSAIVERFYAPARAVPAFAPLSAEAAALYEGDYLTDRRAYGGLEGFVNRLIGVAKVRASAQGGLAITTDGHTRLWIPTDRDDVFKAADGADMLVFQREDGTPTRFFAPSGVAAYERVGPLFKQGVLSGMTLLAALASIATLAGVFVRSRRDTRQTTSQARASLLQTTQAVLWLAAIACVGAFALGSGDVAAVVFGWPSGWLLTASACAFIATLLTLLTLAMVPVVWRGGRRVDSWTDVRKLSFTVTALIFIGYAVVLAAWGFLEFWNT
>CP026100.1|AYV47284.1|3034225_3034618_-|hypothetical-protein
MSKRNVCILAGAGLGAWLAATLFYGAFGSALIERAFWFYALNAFLAAALVTFAFQAVARLLRIPRGRRLYPAMAFALPGVAAANLILLGLVPLAPGAEPSSLGRYLAFLIVLYISIGASVFERAPQKARL
>CP026100.1|AYV47283.1|3033877_3034264_+|RusA-family-crossover-junction-endodeoxyribonuclease
MQDDWTHHGKVRAREAGGELTIVVDGLTTQAKYYKPLIYEFFRKSWRGSRPAWGEFSVEIGMEFVGEPPWLDLDNLAKALLDAIKGYAFHDDAQVARLLVERRPGERERIVIVVRKLESRFLRGTLED
>CP026100.1|AYV47282.1|3032660_3033815_+|hypothetical-protein
MASGKGGGRIVALDLLRGLAVTGMIIVVSPGSWSEVYAPLAHAPWHGWTPADLVFPTFLFCVGMAVGLSIPRLTPADRTSAAFWIKVARRTALLILLGLLLNALPKFDFSHLRLPGILQRIGLCYALGVAICVLAAPRAGGRLKFSFAAVTGAAVVLLAVYWALLAFAPVPGFGAGRLDSHGSLPAFVDRAVLTVPHLWKHGTTPGVGVTYDPEGLLSTLPAAVNVLVGAIAAALLARGGASRIALALLSAALIAGGLLLDGVMPINKSIWTPSFALLSSGLSMAALFVLDLLAEVKPALKLAAPLTIFGGNAILAFMLSQLLGIFGSMPLLPGGHSAQGLTYDLALRVIADPKAASLACAFAVLAFILAILIPLHRRGIHLRL
>CP026100.1|AYV47281.1|3031133_3032525_-|class-II-fumarate-hydratase
MTATRTETDTFGPIEVAADRYWGAQAQRSLGNFKIGWEKQPLPVVRALGIVKRAAAETNHKLGKLEAAIKDAIVQAANEVIEGKLNDHFPLVVWQTGSGTQSNMNANEVISNRAIEILGGEMGSKKPVHPNDHVNMSQSSNDTYPTAMHVACAEQIVSDLLPALKHLHAALKAKSEAWAQIIKIGRTHTQDATPLTLGQEFGGYTQQVENGIERIESTLPKLMQLAQGGTAVGTGLNAPIGFAEGVAEAIAGITGLPFTTAPNKFEALAAHDAMVFSHGAINTVAASLFKIANDIRFLGSGPRAGLGELALPENEPGSSIMPGKVNPTQCEALTQVCVQVFGNHAALTFAGSQGHFELNVFNPVMAYNFLQSVRLLADAAISFTDNCVVGIEPRIDNIQKGVENSLMLVTALNGRLGYDICAKIAKTAHKNGTTLREEAVGGGYLTNEEFDQYVRPENMVSPG
>CP026100.1|AYV49585.1|3030291_3031032_-|AAA-family-ATPase
MTALDRPYWIEARFERREGWDADAYPFNLPVVRGLDSLAFHPRVTFLVGENGSGKSTLIEALAVAWGFNAEGGSTSVNFSTRASHSPLSQHIRKVRGHLRPIDGYFLRAESFFNVASYIEETGVSGYGHVPLHEQSHGEAFFALFDNRFRGDGLYILDEPEAALSPSRQLSFLARLHELVQARSQFIIATHSPILLGYPDALIYQASERGLERVDYEDTEHFQVTRNFLNRRKTFLDVLLSDDDEA
>CP026100.1|AYV47280.1|3030026_3030278_-|post-segregation-antitoxin-CcdA
MGKPELDITPEAIDPELLAQAELLGISVAGMSERQLRLHLQKVDPAGAEERARRWAEENAEAIKAHNAFVEKHGPFGAEWRRW
>CP026100.1|AYV49586.1|3039300_3039525_-|hypothetical-protein
MIDHLPVSGVWSSPDGRFSLELRPDGRFVEVHANPDSVFTGAYVLVGETLKLFEDHGAVITGRLADGRLSLGTV
>CP026100.1|AYV47289.1|3039800_3040697_-|hypothetical-protein
MGAIGPAVIAGALALAAQAQPVAPAVPAAPAPPPDPAVWWSNEIPRPSSEVDPLAGRRPGRKEQPVPIDNGVDPLLYRLWGLQPLQTQLVRGGELVLEAWARPARGVRQAVVRVTVRRDGRAFVQARAGLGCCTPEIGRRVDINAELPGDNIAALKALTGDPAWSQPRSVIVDYGGGAVEGVCVDGVSWDMTLLVPGQARHLRRACDDAEVGSVAGILSALVGSAAGRDPLFDAVLPRGGDFSRQAQAYADLKAQGGQLKAGTSSRPQPPAVPVADDEPEPPPAETPAAAPTSPAEPR
>CP026100.1|AYV47290.1|3040702_3041260_-|acetolactate-synthase-small-subunit
MTANVQPAPASAYDLSPNEQAEQTATFALLVDNEPGVLHRVVGLFAARGYNIESLTVAETDRKAHTSRITVVTRGTRQVLDQIEAQLNKVVNVRRVHDVTRDPNGVERELALVKVRGSGAERVEALRIADIFRAKPVDTTLESFVFEISGAPSKIDKFLDLMRPLGLVELSRTGVLSIERGFEGM
>CP026100.1|AYV47291.1|3041301_3043107_-|acetolactate-synthase-3-large-subunit
MTAHQTIESNAPADSANRAMTGAEIVVRGLVDQGVEVLFGYPGGAVLPIYDALFHEPRLQHILVRHEQGATHAAEGYARSSGKPGVVLVTSGPGATNAITGIMDALMDSIPMVVITGQVPTHLIGTDAFQEADTVGMTRSCTKHNYLVKDVRDLPQIIHEAFKIATTGRPGPVLIDIPKDVQFAKGEYFGPTEVASSHAYSPRVKGDASRIAEAARMIAQARRPIFYTGGGVINAGPKASAALREFAALTGAPVTSTLMGLGAFPAADPAWLGMLGMHGTFEANNAMHDCDVMICVGARFDDRVTGRLDAFSPGSKKIHIDIDASSINKNVRVDLPIVGDAGSVLEDLIEAWKTAGHQPNKAALTDWWAQIDAWRARQCLAYKRSDTVIKPQYAIQRLYELSKDKDVYITTEVGQHQMWAAQFFRFEEPNRWMTSGGLGTMGYGLPAALGVQLAHPKSLVVDIAGEASIQMCIQELSTAIQFDLPVKIFILNNEWMGMVRQWQQLLHGERYSHSYSDSLPDFVKLAEAYGAVGIRCSDPAELDAKILEMINSDKPVIFDCRVEKHENCLPMIPSGKAHNEMIMGEVEDIGNVIGEEGAGLV
>CP026100.1|AYV47292.1|3043381_3043864_-|damage-inducible-protein
MTELSRLAAIVAQRLTERGETLAVAECSSGGLISSALLAMPGASKFYVGGALVYTARARLTLLDIPQKAMDGLRSASEPYALLLARVVGKNLKATWGLSETGAAGPDGNRYGDAAGHACFAVVGSGREVSLTIETGIDDREANMRRFAEQALALLAETLS
>CP026100.1|AYV49587.1|3043945_3044890_-|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MDRDAPHATVETPFAPDSRVWMIAGPTASGKSAYALDLAERTGAEIVNADSMQIYAGLRVLTAAPSPEEEARAPHHLFGVADAAEGWSVGRWQAAAIEALRDIAARGRPAIVVGGTGLYFRALTHGLADVPPVPESQREISGLLYAAQGEGAFRDLLRPLDPAAEARIESGDRQRLVRAHAVAVATGRALSDWQADTRPVLQPGEWSGVVLDPPRAALYDRCDARLGLMVQNGALDEVAAMEARGLDPALPALKAVGYRELAAHLRGETSLDQALDAARQETRRYAKRQLTWFRNQTADWTRLDPLPVSQPAAG
>CP026100.1|AYV47293.1|3044903_3045356_+|hypothetical-protein
MIAAAMVASLSAGVAQAATTESAKPKAPPAAAQAAPAPAELTSREKAGCGAVLVILGKVATSYPQLFAQKGNDGRGAQFMLEAFGAKGRMMMDEAFEDGAEQGVKPTKVYEDGLGFLFESVRPEPGESNEAAGKRAAMALLQRCTGISTN
>CP026100.1|AYV47294.1|3045361_3046246_+|phosphoserine-phosphatase-SerB
MTAGGDWLSRPAMHVLTLVGPEAETLAAALSLGQIVPLGPNAVDVTFEGEAAPVREQVITAIGDKPVDFAIQPVENRRKRLLIADMDSTIINVECLDELADFAGVKDEVSEITERAMRGELAFEGALRERVGMLKGLSTSALQTCFDERVRLNPGAETLVRTMAAHGARCALVSGGFTFFTSRVAQAAGFHLNRANTLIELDAALTGEVGDPILGKEAKLAALQEETAALGLTPADALAVGDGANDLAMIEAAGLGVAYRAKPIVAARAHAKVDHADLTALLYFQGYRAEEFVQ
>CP026100.1|AYV47295.1|3046242_3046908_+|HAD-family-hydrolase
MSFPRPVEAVVFDMDGLLLDTETVYRAAMIDAGQAFGVPVTAAIYASMVGKTNPECAVMLRDLYGEDFPVKPFFERLWADVEVLLEAEIRLKDGVQEILDHLDDLGLPRAIATSNGLPAVERYLGRFGLLPRFHAVVAHHDVTRHKPHPDPYLLAARRLGVDPAACLALEDSHPGVRAAHGAGMMTIMVPDILDPTEEMHEKCVHIADSLHVVLDLLKRAG
>CP026100.1|AYV47296.1|3047102_3047951_-|protease-modulator-HflC
MSRPANTPLIAAGVAAVGALILVSTTVYKVDQRQQALVVRFGDPVAVVTTPGLHLKTPIDNVLRFDKRNIDLSANQEEVTAADQQKLVVDAFVRYRISDTRQFFRALGRESVARDRLDRIVNAALREQIGRADSGDVIAGKRAQIMAAIREEVARQVEASNLGIQIIDVRIKRADLPEPNQQAVYERMQTARKQEAAELRAIGDQQRKEIVATAYEEAEKIRGEADAQRAQLFASSFGRDPSFAAFYRSMQAYEQSMGRGDTTFVLSPDSDYFKYFQKGPGG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NZ_CP029235	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436e, complete sequence	29916-29937	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NC_019848	Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence	15655-15676	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	1336811-1336832	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NZ_CP019585	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence	1405604-1405625	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NC_017327	Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence	17743-17764	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NZ_CP021798	Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence	743314-743335	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NC_017324	Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence	301728-301749	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NZ_CP009145	Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence	17777-17798	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NZ_CP021827	Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence	201275-201296	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NZ_CP021801	Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence	1399650-1399671	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NZ_CP021821	Sinorhizobium meliloti strain M162 plasmid accessoryA, complete sequence	129671-129692	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NZ_CP021830	Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence	1098709-1098730	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NZ_CP021824	Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence	1490958-1490979	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NZ_CP021813	Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence	470576-470597	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NC_018683	Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence	17780-17801	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NZ_CP021794	Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence	640999-641020	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NZ_CP021809	Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence	609739-609760	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NZ_CP021805	Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence	345783-345804	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NZ_CP021217	Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence	1267577-1267598	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NZ_CP026526	Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence	16410-16431	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NZ_CP019483	Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence	19562-19583	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NZ_CP019486	Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence	1098706-1098727	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NC_020527	Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence	1335148-1335169	2	0.909
CP026100_2	2.2\|3870134\|22\|CP026100\|CRISPRCasFinder	3870134-3870155	22	NC_015583	Novosphingobium sp. PP1Y plasmid Mpl, complete sequence	421683-421704	3	0.864

1. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NZ_CP029235 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436e, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
gtcgggacgctcggcgcgctca	Protospacer
 ********************

2. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NC_019848 (Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

3. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

4. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NZ_CP019585 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

5. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NC_017327 (Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

6. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

7. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

8. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NZ_CP009145 (Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

9. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NZ_CP021827 (Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

10. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NZ_CP021801 (Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

11. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NZ_CP021821 (Sinorhizobium meliloti strain M162 plasmid accessoryA, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

12. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NZ_CP021830 (Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

13. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NZ_CP021824 (Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

14. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

15. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

16. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

17. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

18. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NZ_CP021805 (Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

19. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NZ_CP021217 (Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

20. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

21. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NZ_CP019483 (Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

22. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

23. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 2, identity: 0.909

ttcgggacgctcggcgcgctcc	CRISPR spacer
ctcggcacgctcggcgcgctcc	Protospacer
.**** ****************

24. spacer 2.2|3870134|22|CP026100|CRISPRCasFinder matches to NC_015583 (Novosphingobium sp. PP1Y plasmid Mpl, complete sequence) position: , mismatch: 3, identity: 0.864

ttcgggacgctcggcgcgctcc	CRISPR spacer
gaagggacgctcggcgcgctcc	Protospacer
   *******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

388399 : 458463

Burkholderia_phage(20.0%)

transposase,integrase,plate

attL 375176:375193|attR 463554:463571

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
375176:375193	attL	NA	NA	NA	NA
AYV45094.1\|388399_389611_-\|integrase	integrase	NA	NA	NA	NA
AYV45095.1\|389849_391235_+	DNA (cytosine-5-)-methyltransferase	K4HZD0	Acidithiobacillus_phage	3.2e-71	42.8
AYV45096.1\|391231_393316_+	hypothetical protein	NA	NA	NA	NA
AYV45097.1\|393312_394815_+	hypothetical protein	NA	NA	NA	NA
AYV45098.1\|394811_400250_+	hypothetical protein	NA	NA	NA	NA
AYV45099.1\|400256_400703_+	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	2.9e-34	51.4
AYV45100.1\|400752_401523_+	hypothetical protein	NA	NA	NA	NA
AYV45101.1\|401733_402705_-	AAA family ATPase	NA	NA	NA	NA
AYV45102.1\|402698_404366_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AYV45103.1\|404365_405016_-	transposon DNA-invertase	E5FFF9	Burkholderia_phage	7.2e-34	47.0
AYV49422.1\|406069_407236_+	chromate transporter	NA	NA	NA	NA
AYV45104.1\|407371_408259_+	peptidase M23	NA	NA	NA	NA
AYV45105.1\|408255_408660_+	hypothetical protein	NA	NA	NA	NA
AYV45106.1\|408955_409918_-	nucleotidyltransferase	NA	NA	NA	NA
AYV49423.1\|410141_411401_-\|integrase	integrase	NA	NA	NA	NA
AYV45107.1\|411742_413131_+	hypothetical protein	NA	NA	NA	NA
AYV45108.1\|413132_413897_-	3-oxoacyl-ACP reductase	G8EDD5	Acanthamoeba_castellanii_mamavirus	9.8e-06	33.1
AYV45109.1\|413902_415228_-	histidinol dehydrogenase	NA	NA	NA	NA
AYV45110.1\|415326_416010_-	hypothetical protein	NA	NA	NA	NA
AYV45111.1\|416099_416654_-	AraC family transcriptional regulator	NA	NA	NA	NA
AYV45112.1\|416819_417875_-	zinc-binding dehydrogenase	A0A2K9L339	Tupanvirus	1.1e-74	45.4
AYV45113.1\|418078_418423_-	hypothetical protein	NA	NA	NA	NA
AYV45114.1\|418877_420644_+	gamma-glutamyltransferase	NA	NA	NA	NA
AYV45115.1\|420767_421199_-	acyl-CoA thioesterase	NA	NA	NA	NA
AYV45116.1\|421216_421507_-	zinc-finger domain-containing protein	NA	NA	NA	NA
AYV45117.1\|421658_422621_+	multidrug ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.6e-21	32.6
AYV45118.1\|422837_423740_-	phosphorylase	NA	NA	NA	NA
AYV45119.1\|423876_424929_+	purine nucleoside permease	NA	NA	NA	NA
AYV45120.1\|424932_426249_+	guanine permease	A0A0R6PHV4	Moraxella_phage	2.1e-56	35.3
AYV49424.1\|426436_428113_-	recombinase family protein	NA	NA	NA	NA
AYV45121.1\|428479_429103_-	hypothetical protein	NA	NA	NA	NA
AYV45122.1\|429763_431194_+	hypothetical protein	NA	NA	NA	NA
AYV45123.1\|431351_432383_+	hypothetical protein	NA	NA	NA	NA
AYV45124.1\|432412_432949_+	hypothetical protein	NA	NA	NA	NA
AYV45125.1\|433044_434490_-	hypothetical protein	A0A2D0ZM66	Rhodococcus_phage	1.2e-17	40.2
AYV45126.1\|434591_435926_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AYV45127.1\|435922_437263_+	type VI secretion system protein TssL	NA	NA	NA	NA
AYV45128.1\|437263_440713_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
AYV45129.1\|440718_441306_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
AYV45130.1\|441130_442048_+	serine/threonine protein phosphatase	NA	NA	NA	NA
AYV45131.1\|442124_444332_+	hypothetical protein	A0A1V0SBL0	Catovirus	9.4e-09	27.6
AYV45132.1\|444342_444987_-	hypothetical protein	NA	NA	NA	NA
AYV45133.1\|444913_445186_-	hypothetical protein	NA	NA	NA	NA
AYV45134.1\|445194_446007_-	hypothetical protein	NA	NA	NA	NA
AYV45135.1\|446041_447481_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
AYV45136.1\|447477_448053_-	hypothetical protein	NA	NA	NA	NA
AYV45137.1\|448063_450073_-	hypothetical protein	A0A077K8Q4	Ralstonia_phage	3.6e-39	27.5
AYV45138.1\|450440_451508_+	hypothetical protein	NA	NA	NA	NA
AYV49425.1\|451613_452111_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AYV45139.1\|452128_453628_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
AYV45140.1\|453681_454197_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
AYV45141.1\|454208_455009_+	virulence protein SciE type	NA	NA	NA	NA
AYV45142.1\|455010_455538_+	hypothetical protein	NA	NA	NA	NA
AYV45143.1\|455542_457429_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AYV45144.1\|457392_458463_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
463554:463571	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1352743 : 1359881

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYV45926.1\|1352743_1353397_-	fructose-6-phosphate aldolase	A0A127KMN5	Cyanophage	1.3e-54	52.9
AYV45927.1\|1353469_1354345_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	2.1e-84	53.8
AYV49473.1\|1354341_1355223_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.5e-21	31.2
AYV45928.1\|1355222_1356272_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.5e-85	48.5
AYV45929.1\|1356420_1357749_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	2.4e-28	29.2
AYV45930.1\|1357844_1359881_-	NAD(+) synthase	A0A2L0UZF5	Agrobacterium_phage	8.7e-09	25.7

DBSCAN-SWA_3

2032527 : 2047711

Paracoccus_phage(22.22%)

capsid,tail,head,portal,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYV46480.1\|2032527_2033664_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.2e-68	41.6
AYV46481.1\|2033820_2034069_+	hypothetical protein	NA	NA	NA	NA
AYV46482.1\|2034065_2034464_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	6.0e-23	45.0
AYV46483.1\|2034617_2035853_+\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	3.1e-78	42.5
AYV46484.1\|2036009_2036282_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
AYV46485.1\|2036278_2036674_+	DUF3168 domain-containing protein	NA	NA	NA	NA
AYV46486.1\|2036699_2037116_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
AYV46487.1\|2037129_2037411_+	hypothetical protein	NA	NA	NA	NA
AYV49509.1\|2037425_2037596_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
AYV46488.1\|2037592_2038117_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
AYV46489.1\|2038113_2038533_-	hypothetical protein	NA	NA	NA	NA
AYV46490.1\|2038529_2038952_-	hypothetical protein	NA	NA	NA	NA
AYV46491.1\|2038957_2039371_-	hypothetical protein	NA	NA	NA	NA
AYV46492.1\|2039446_2039905_-	hypothetical protein	NA	NA	NA	NA
AYV46493.1\|2039984_2040500_-	hypothetical protein	NA	NA	NA	NA
AYV46494.1\|2040578_2041223_+	TIGR02217 family protein	A0A0B5A2K3	Paracoccus_phage	1.4e-42	42.6
AYV46495.1\|2041222_2041873_+	hypothetical protein	A0A1V0DY93	Dinoroseobacter_phage	1.4e-21	37.6
AYV46496.1\|2041869_2042322_+	peptidase P60	F4YXU4	Roseobacter_phage	1.7e-29	47.9
AYV46497.1\|2042321_2046089_+	hypothetical protein	A0A0K1Y6G6	Rhodobacter_phage	1.4e-201	37.5
AYV46498.1\|2046175_2047108_+	molecular chaperone DnaJ	A0A2L0UZR4	Agrobacterium_phage	2.0e-16	26.3
AYV46499.1\|2047123_2047711_-	AraC family transcriptional regulator	A0A291LAM3	Bordetella_phage	1.1e-09	37.9

DBSCAN-SWA_4

5098617 : 5122747

uncultured_Mediterranean_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYV48924.1\|5098617_5099733_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.1e-98	50.6
AYV48925.1\|5099733_5100846_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AYV48926.1\|5100995_5101976_+	endonuclease	NA	NA	NA	NA
AYV48927.1\|5101956_5102535_-	phosphohydrolase	NA	NA	NA	NA
AYV48928.1\|5102590_5103058_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.8e-35	54.1
AYV48929.1\|5103153_5104035_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	3.6e-20	33.7
AYV48930.1\|5104050_5104884_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.8e-21	35.9
AYV48931.1\|5105014_5105503_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	3.2e-34	48.3
AYV48932.1\|5105525_5108285_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	5.5e-99	33.5
AYV49718.1\|5108400_5108925_+	superoxide dismutase	Q9MC02	Salmonella_phage	5.1e-14	36.3
AYV48933.1\|5109166_5111062_-	peptidase M24	D6QWN5	uncultured_phage	9.3e-05	37.2
AYV48934.1\|5111167_5111827_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.3e-35	48.0
AYV48935.1\|5111826_5112645_-	5'/3'-nucleotidase SurE	NA	NA	NA	NA
AYV48936.1\|5112641_5113937_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.7e-96	54.8
AYV48937.1\|5114199_5115102_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	2.8e-44	38.4
AYV48938.1\|5115098_5115722_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
AYV48939.1\|5115824_5116049_-	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
AYV48940.1\|5116185_5116851_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	3.2e-37	46.7
AYV48941.1\|5117014_5117836_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	5.9e-25	31.4
AYV48942.1\|5117832_5118861_-	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	1.1e-25	44.4
AYV48943.1\|5118872_5119673_-	sporulation protein	NA	NA	NA	NA
AYV48944.1\|5119807_5120992_-	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
AYV48945.1\|5121069_5121402_+	iron-sulfur cluster insertion protein ErpA	A0A1B1IT29	uncultured_Mediterranean_phage	3.4e-11	38.1
AYV48946.1\|5121469_5121553_+	hypothetical protein	NA	NA	NA	NA
AYV48947.1\|5121649_5122747_+	3-deoxy-7-phosphoheptulonate synthase	S4W5F1	Pandoravirus	1.2e-81	47.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage