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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP018196 Fusobacterium necrophorum subsp. funduliforme strain F1291 chromosome, complete genome 3 crisprs cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,DEDDh,csa3,PD-DExK,cas13c,DinG,RT,WYL 4 5 6 0

Results visualization

1. CP018196
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP018196_1 547874-549232 TypeV NA
20 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,cas14j

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP018196_3 892277-893099 TypeVI-C VI-C
12 spacers
cas13c

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP018196_4 1372244-1372337 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP018196_1 1.2|547971|34|CP018196|PILER-CR,CRT 547971-548004 34 CP018196.1 20570-20603 0 1.0
CP018196_1 1.21|547972|33|CP018196|CRISPRCasFinder 547972-548004 33 CP018196.1 20570-20602 0 1.0
CP018196_1 1.17|548966|37|CP018196|PILER-CR,CRT 548966-549002 37 CP018196.1 1900935-1900971 1 0.973
CP018196_1 1.36|548967|36|CP018196|CRISPRCasFinder 548967-549002 36 CP018196.1 1900935-1900970 1 0.972

1. spacer 1.2|547971|34|CP018196|PILER-CR,CRT matches to position: 20570-20603, mismatch: 0, identity: 1.0

gcaggaagaattcatcatatgatagtccatcaac	CRISPR spacer
gcaggaagaattcatcatatgatagtccatcaac	Protospacer
**********************************

2. spacer 1.21|547972|33|CP018196|CRISPRCasFinder matches to position: 20570-20602, mismatch: 0, identity: 1.0

caggaagaattcatcatatgatagtccatcaac	CRISPR spacer
caggaagaattcatcatatgatagtccatcaac	Protospacer
*********************************

3. spacer 1.17|548966|37|CP018196|PILER-CR,CRT matches to position: 1900935-1900971, mismatch: 1, identity: 0.973

gaagcaaggagacatacatagacaaagaaaaatattt	CRISPR spacer
gaagcaaggagacgtacatagacaaagaaaaatattt	Protospacer
*************.***********************

4. spacer 1.36|548967|36|CP018196|CRISPRCasFinder matches to position: 1900935-1900970, mismatch: 1, identity: 0.972

aagcaaggagacatacatagacaaagaaaaatattt	CRISPR spacer
aagcaaggagacgtacatagacaaagaaaaatattt	Protospacer
************.***********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP018196_1 1.26|548304|34|CP018196|CRISPRCasFinder 548304-548337 34 KX077890 Streptococcus phage phiLP081102, complete genome 21757-21790 8 0.765
CP018196_1 1.26|548304|34|CP018196|CRISPRCasFinder 548304-548337 34 KC413987 Streptococcus phage phiSS12, complete genome 20883-20916 8 0.765
CP018196_1 1.7|548303|35|CP018196|PILER-CR,CRT 548303-548337 35 KX077890 Streptococcus phage phiLP081102, complete genome 21757-21791 9 0.743
CP018196_1 1.7|548303|35|CP018196|PILER-CR,CRT 548303-548337 35 KC413987 Streptococcus phage phiSS12, complete genome 20883-20917 9 0.743
CP018196_1 1.7|548303|35|CP018196|PILER-CR,CRT 548303-548337 35 AP018320 Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome 40287-40321 9 0.743
CP018196_1 1.26|548304|34|CP018196|CRISPRCasFinder 548304-548337 34 AP018320 Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome 40288-40321 9 0.735
CP018196_3 3.3|892441|36|CP018196|PILER-CR,CRISPRCasFinder,CRT 892441-892476 36 NZ_CP045275 Bacillus megaterium strain FDU301 plasmid pFDU301C, complete sequence 90056-90091 9 0.75
CP018196_3 3.8|892771|36|CP018196|PILER-CR,CRISPRCasFinder,CRT 892771-892806 36 NZ_CP045275 Bacillus megaterium strain FDU301 plasmid pFDU301C, complete sequence 90056-90091 9 0.75
CP018196_1 1.23|548104|35|CP018196|CRISPRCasFinder 548104-548138 35 MK448534 Streptococcus satellite phage Javan547, complete genome 2874-2908 10 0.714

1. spacer 1.26|548304|34|CP018196|CRISPRCasFinder matches to KX077890 (Streptococcus phage phiLP081102, complete genome) position: , mismatch: 8, identity: 0.765

atgtaaaaaaagatttttacaagcacgagtatag	CRISPR spacer
atcaaaaacaagatttttacaaccacgagaaagc	Protospacer
**  **** ************* ****** * . 

2. spacer 1.26|548304|34|CP018196|CRISPRCasFinder matches to KC413987 (Streptococcus phage phiSS12, complete genome) position: , mismatch: 8, identity: 0.765

atgtaaaaaaagatttttacaagcacgagtatag	CRISPR spacer
atcaaaaacaagatttttacaaccacgagaaagc	Protospacer
**  **** ************* ****** * . 

3. spacer 1.7|548303|35|CP018196|PILER-CR,CRT matches to KX077890 (Streptococcus phage phiLP081102, complete genome) position: , mismatch: 9, identity: 0.743

aatgtaaaaaaagatttttacaagcacgagtatag	CRISPR spacer
tatcaaaaacaagatttttacaaccacgagaaagc	Protospacer
 **  **** ************* ****** * . 

4. spacer 1.7|548303|35|CP018196|PILER-CR,CRT matches to KC413987 (Streptococcus phage phiSS12, complete genome) position: , mismatch: 9, identity: 0.743

aatgtaaaaaaagatttttacaagcacgagtatag	CRISPR spacer
tatcaaaaacaagatttttacaaccacgagaaagc	Protospacer
 **  **** ************* ****** * . 

5. spacer 1.7|548303|35|CP018196|PILER-CR,CRT matches to AP018320 (Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome) position: , mismatch: 9, identity: 0.743

aatgtaaaaaaagatttttacaagcacgagtatag	CRISPR spacer
aagctggtaaaagaattttacaagcacgagaattt	Protospacer
**  *.. ****** *************** **  

6. spacer 1.26|548304|34|CP018196|CRISPRCasFinder matches to AP018320 (Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome) position: , mismatch: 9, identity: 0.735

atgtaaaaaaagatttttacaagcacgagtatag	CRISPR spacer
agctggtaaaagaattttacaagcacgagaattt	Protospacer
*  *.. ****** *************** **  

7. spacer 3.3|892441|36|CP018196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045275 (Bacillus megaterium strain FDU301 plasmid pFDU301C, complete sequence) position: , mismatch: 9, identity: 0.75

atttcttctgataattctttcataacatcaattttt	CRISPR spacer
tcttctcctgataattctttcataaaatacttcatt	Protospacer
 .****.****************** **   *. **

8. spacer 3.8|892771|36|CP018196|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045275 (Bacillus megaterium strain FDU301 plasmid pFDU301C, complete sequence) position: , mismatch: 9, identity: 0.75

atttcttctgataattctttcataacatcaattttt	CRISPR spacer
tcttctcctgataattctttcataaaatacttcatt	Protospacer
 .****.****************** **   *. **

9. spacer 1.23|548104|35|CP018196|CRISPRCasFinder matches to MK448534 (Streptococcus satellite phage Javan547, complete genome) position: , mismatch: 10, identity: 0.714

gattttttgcttgcaatctaaaaaaatattgtata	CRISPR spacer
tcctttttgctttcaatctgaaaaaatacattttt	Protospacer
  .********* ******.********.  * * 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 350533 : 355155 6 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_2 415950 : 439576 27 Clostridium_phage(29.41%) portal,terminase,head NA
DBSCAN-SWA_3 1060129 : 1067843 8 Prochlorococcus_phage(42.86%) NA NA
DBSCAN-SWA_4 1657941 : 1730625 81 Clostridium_phage(32.0%) head,integrase,tRNA,tail,capsid,protease,portal,terminase,plate attL 1677831:1677877|attR 1712108:1712154
DBSCAN-SWA_5 1746115 : 1755459 8 uncultured_phage(28.57%) NA NA
DBSCAN-SWA_6 1913554 : 1921810 18 Listeria_phage(12.5%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage