CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP019306	Fusobacterium necrophorum subsp. funduliforme strain F1260 chromosome, complete genome	3 crisprs	cas10,csm3gr7,cas14j,cas3,DEDDh,csa3,PD-DExK,cas4,WYL,DinG,RT,cas8b2	0	5	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP019306_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP019306_1

649145-649562

Orphan

Consensus_repeat	Method
AATTAGAGTATTACTAAAGTAGAAT	CRT
TAATTAGAGTATTACTAAAGTAGAATGTAAAT	CRISPRCasFinder
TAATTAGAGTATTACTAAAGTAGAATGTAAAT	PILER-CR

6 spacers

The CRISPR arrays of CP019306_1

>merge|CP019306|1|649145-649562|CRT,CRISPRCasFinder,PILER-CR
AATTAGAGTAGAATGTAAATTTGTTAACAGTAGATTTGACAAATCCAACTCAAAAAAATTAGAGTATTACTAAAGTAGAATGTAAATAAATTAGCCTTCATATCTCCTTCAAGTGTAGTAATAATTAGAGTATTACTAAAGTAGAATGTAAATATTTTACTGCTTAAATTTTTTAGATATATTGCTTTTAATTAGAGTATTACTAAAGTAGAATGTAAATTGGAATTTTTCCTTCTTCTAATGACTTAATGACACTAATTAGAGTATTACTAAAGTAGAATGTAAATATGGGCAAGGAGGAATCTTATTTCGAAAAAACTTGATTAGAGTATTACTAAAGTAGAATGTAAATCTTCGGTGTCCTGCAATGTTGAAAGCTTGGCAAGGAATTAGAGTATTACTAGAGTAGAATATAAAT

>CP019306|1|1|649145-649556|CRT
AATTAGAGTAGAATGTAAATTTGTT	AACAGTAGATTTGACAAATCCAACTCAAAAA
AATTAGAGTATTACTAAAGTAGAAT	GTAAATAAATTAGCCTTCATATCTCCTTCAAGTGTAGTAAT
AATTAGAGTATTACTAAAGTAGAAT	GTAAATATTTTACTGCTTAAATTTTTTAGATATATTGCTTTT
AATTAGAGTATTACTAAAGTAGAAT	GTAAATTGGAATTTTTCCTTCTTCTAATGACTTAATGACACT
AATTAGAGTATTACTAAAGTAGAAT	GTAAATATGGGCAAGGAGGAATCTTATTTCGAAAAAACTT
GATTAGAGTATTACTAAAGTAGAAT	GTAAATCTTCGGTGTCCTGCAATGTTGAAAGCTTGGCAAGG
AATTAGAGTATTACTAGAGTAGAAT

>CP019306|1|1|649200-649562|CRISPRCasFinder
AAATTAGAGTATTACTAAAGTAGAATGTAAAT	AAATTAGCCTTCATATCTCCTTCAAGTGTAGTAA
TAATTAGAGTATTACTAAAGTAGAATGTAAAT	ATTTTACTGCTTAAATTTTTTAGATATATTGCTTT
TAATTAGAGTATTACTAAAGTAGAATGTAAAT	TGGAATTTTTCCTTCTTCTAATGACTTAATGACAC
TAATTAGAGTATTACTAAAGTAGAATGTAAAT	ATGGGCAAGGAGGAATCTTATTTCGAAAAAACT
TGATTAGAGTATTACTAAAGTAGAATGTAAAT	CTTCGGTGTCCTGCAATGTTGAAAGCTTGGCAAG
GAATTAGAGTATTACTAGAGTAGAATATAAAT

>CP019306|1|1|649201-649496|PILER-CR
AATTAGAGTATTACTAAAGTAGAATGTAAATA	AATTAGCCTTCATATCTCCTTCAAGTGTAGTAAT
AATTAGAGTATTACTAAAGTAGAATGTAAATA	TTTTACTGCTTAAATTTTTTAGATATATTGCTTTT
AATTAGAGTATTACTAAAGTAGAATGTAAATT	GGAATTTTTCCTTCTTCTAATGACTTAATGACACT
AATTAGAGTATTACTAAAGTAGAATGTAAATA	TGGGCAAGGAGGAATCTTATTTCGAAAAAACTT
GATTAGAGTATTACTAAAGTAGAATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP019306.1\|AYV94747.1\|660455_661079_+\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
CP019306.1\|AYV94729.1\|641955_642759_-\|hypothetical-protein	unknown	unknown	unknown
CP019306.1\|AYV94739.1\|650891_652073_+\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|225995
CP019306.1\|AYV94744.1\|657610_658531_+\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982
CP019306.1\|AYV94742.1\|655885_656791_+\|aspartate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|223614
CP019306.1\|AYV94737.1\|648169_648742_-\|hypothetical-protein	unknown	unknown	unknown
CP019306.1\|AYV94736.1\|647974_648160_-\|hypothetical-protein	unknown	unknown	unknown
CP019306.1\|AYV94731.1\|643353_644640_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275056
CP019306.1\|AYV94746.1\|659245_660463_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|223122
CP019306.1\|AYV94730.1\|642755_643241_-\|chromosome-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|319260
CP019306.1\|AYV94738.1\|649821_650064_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377122
CP019306.1\|AYV96216.1\|648738_649002_-\|hypothetical-protein	unknown	unknown	unknown
CP019306.1\|AYV94743.1\|656800_657601_+\|dihydroorotate-dehydrogenase-electron-transfer-subunit	unknown	unknown	gnl\|CDD\|99814
CP019306.1\|AYV94740.1\|652723_654436_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223097
CP019306.1\|AYV94732.1\|644636_645833_-\|helicase	unknown	unknown	gnl\|CDD\|350677
CP019306.1\|AYV94733.1\|645813_646194_-\|hypothetical-protein	unknown	unknown	unknown
CP019306.1\|AYV94734.1\|646199_646706_-\|chromosome-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|319255
CP019306.1\|AYV94741.1\|654622_655591_+\|thiamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270263
CP019306.1\|AYV94735.1\|646716_647988_-\|DUF3440-domain-containing-protein	unknown	unknown	gnl\|CDD\|226478
CP019306.1\|AYV94745.1\|658535_659252_+\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695

Protein	Function_ID	Function_description	E-value
CP019306.1\|AYV94747.1\|660455_661079_+\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	2.74144e-55
CP019306.1\|AYV94743.1\|656800_657601_+\|dihydroorotate-dehydrogenase-electron-transfer-subunit	gnl\|CDD\|99814	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.	1.60599e-95
CP019306.1\|AYV94739.1\|650891_652073_+\|ISL3-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.3271e-74
CP019306.1\|AYV94744.1\|657610_658531_+\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	5.85404e-158
CP019306.1\|AYV94742.1\|655885_656791_+\|aspartate-carbamoyltransferase	gnl\|CDD\|223614	COG0540, PyrB, Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism].	1.74984e-143
CP019306.1\|AYV94731.1\|643353_644640_+\|hypothetical-protein	gnl\|CDD\|275056	TIGR04211, hypothetical_protein, SH3 domain protein. Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region.	5.61578e-05
CP019306.1\|AYV94746.1\|659245_660463_+\|dihydroorotase	gnl\|CDD\|223122	COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism].	1.82399e-130
CP019306.1\|AYV94730.1\|642755_643241_-\|chromosome-partitioning-protein-ParB	gnl\|CDD\|319260	cd16403, ParB_N_like_MT, ParB N-terminal-like domain, some attached to C-terminal S-adenosylmethionine-dependent methyltransferase. This family represents domains related to the N-terminal domain of ParB, a DNA-binding component of the prokaryotic parABS partitioning system, fused to a variety of C-terminal domains, including S-adenosylmethionine-dependent methyltransferase-like domains. parABS contributes to the efficient segregation of chromosomes and low-copy number plasmids to daughter cells during prokaryotic cell division. The process includes the parA (Walker box) ATPase, the ParB DNA-binding protein and a parS cis-acting DNA sites. Binding of ParB to centromere-like parS sites is followed by non-specific binding to DNA ("spreading", which has been implicated in gene silencing in plasmid P1) and oligomerization of additional ParB molecules near the parS sites. It has been proposed that ParB-ParB cross-linking compacts the DNA, binds to parA via the N-terminal region, and leads to parA separating the ParB-parS complexes and the recruitment of the SMC (structural maintenance of chromosomes) complexes. The ParB N-terminal domain of Bacillus subtilis and other species contains a Arginine-rich ParB Box II with residues essential for bridging of the ParB-parS complexes. The arginine-rich ParB Box II consensus (I[VIL]AGERR[FYW]RA[AS] identified in several species is partially conserved with this family and related families. Mutations within the basic columns particularly debilitate spreading from the parS sites and impair SMC recruitment. The C-terminal domain contains a HTH DNA-binding motif and is the primary homo-dimerization domain, and binds to parS DNA sites. Additional homo-dimerization contacts are found along the N-terminal domain, but dimerization of the N-terminus may only occur after concentration at ParB-parS foci.	2.09722e-46
CP019306.1\|AYV94738.1\|649821_650064_+\|hypothetical-protein	gnl\|CDD\|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	0.000159013
CP019306.1\|AYV94741.1\|654622_655591_+\|thiamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270263	cd13545, PBP2_TbpA, Substrate binding domain of thiamin transporter, a member of the type 2 periplasmic binding fold superfamily. Thiamin-binding protein TbpA is the periplasmic component of ABC-type transporter in E. coli, while the transmembrane permease and ATPase are ThiP and ThiQ, respectively. Thiamin (vitamin B1) is an essential confactor in all living systems that most prokaryotes, plants, and fungi can synthesized thiamin. However, in vertebrates, thiamine cannot be synthesized and must therefore be obtained through dietary absorption. In addition to thiamin biosynthesis, most organisms can import thiamin using specific transporters. After binding thiamine with high affinity, TbpA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The thiamine-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.4292e-72
CP019306.1\|AYV94740.1\|652723_654436_+\|arginine--tRNA-ligase	gnl\|CDD\|223097	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	0
CP019306.1\|AYV94732.1\|644636_645833_-\|helicase	gnl\|CDD\|350677	cd17919, DEXHc_Snf, DEXH/Q-box helicase domain of DEAD-like helicase Snf family proteins. Sucrose Non-Fermenting (SNF) proteins DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.61195e-13
CP019306.1\|AYV94734.1\|646199_646706_-\|chromosome-partitioning-protein-ParB	gnl\|CDD\|319255	cd16397, IbrB_like, immunoglobulin-binding regulator IbrB activates eib genes. IbrB (along with IbrA) activates immunoglobulin-binding eib genes in Escherichia coli. IbrB is related to the ParB N-terminal domain family, which includes DNA-binding proteins involved in chromosomal/plasmid segregation and transcriptional regulation, consistent with a possible mechanism for IbrB in DNA binding-related regulation of eib expression. The ParB like family is a diverse domain superfamily with structural and sequence similarity to ParB of bacterial chromosomes/plasmid parABS partitioning system and Sulfiredoxin (Srx), which is a reactivator of oxidatively inactivated 2-cys peroxiredoxins. Other families includes proteins related to StrR, a putative regulator in the biosynthetic gene cluster and a family containing a Pyrococcus furiosus nuclease and putative transcriptional regulators SbnI (Staphylococcus aureus siderophore biosynthetic gene cluster ) and EdeB (Brevibacillus brevis antimicrobial peptide edeine biosynthetic cluster). Nuclease activity has also been reported in arabidopsis Srx.	7.01926e-63
CP019306.1\|AYV94735.1\|646716_647988_-\|DUF3440-domain-containing-protein	gnl\|CDD\|226478	COG3969, COG3969, Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only].	5.90009e-163
CP019306.1\|AYV94745.1\|658535_659252_+\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	3.53986e-109

>CP019306.1|AYV96216.1|648738_649002_-|hypothetical-protein
MELSLNFLDKEEKFPISIYDSDEIKIGEILELGYEDEKKKWVKISKMEILKSLPGTNDKVVELTCSPLSIEERRMIIEAYLKRGGKE
>CP019306.1|AYV94737.1|648169_648742_-|hypothetical-protein
MNITKHAMMRYVSRIHKIAGINEKTYDNFKRDNETLISELEERLQEEFLKSEFFIKQKHEGHQEASFYINEDKMMTYVVVNGNMLTCYPIDFNLDEIGNIEMYHTLRNSFNREKELLKNMEENSVISEKEAGIRELELEIQMLFSKQKQLEKEKSTLENEIQIEKLKIDDVRNKSSYIAERILRSCKKGL
>CP019306.1|AYV94736.1|647974_648160_-|hypothetical-protein
MKALKEMCDIMLEKRIIENFEITEFGEIIAYTEEGISLQKKDIQRIYNLTLGKKEKKNECV
>CP019306.1|AYV94735.1|646716_647988_-|DUF3440-domain-containing-protein
MNVYEASRKRIQYAISEFDNIIVSFSGGKDSGVMLNLTLDIAKEMKVLHKIGVYHMDYEAQYQATTDYVTEVFHSLPIEVKKYWVCLPIKAQCSVSMFQSFWQPWKFEDKEIWCRKLPENSINEENFPYSFDYEISDYQFNIKFGKEIAKKGKTCFLIGIRTQESLHRYKAVNKFDDKNEYEGKKYTTKISENLVNIYPIYDWLVDDIWIYNSKFQKRYNKIYDLFYQAGLKVNAMRVASPFNDAAQDSLKLYKVIDPNNWGKLVGRVNGVNFTGLYGGTTAMGWKTIKKPDHFTWKEYMYFLLDTLPKHTREIYLKKLETSIKYWTVTGGALPKEIAKELTVEHENLGKPKNNRNYTTEYDVIRFKDYLDEIEISKPNLLPTYKRMCIAILKNDTSCKTLGFGQTKYELEKRKNIMEKYRNL
>CP019306.1|AYV94734.1|646199_646706_-|chromosome-partitioning-protein-ParB
MYQSPVYNIKKVPIEKVQANSYNPNSVAPPEMKLLYQSIKNDGYTMPIVCYYLKDIDKYEIVDGFHRYTIMKKHKDIYERENGCLPVVVIDKDISNRMASTIRHNRARGSHSIELMTNIVSELVESGMSDAWILKNIGMDADELLRLKQLSGLASLFKDREFSKSEEE
>CP019306.1|AYV94733.1|645813_646194_-|hypothetical-protein
MWFEIYLQYSDIILETEKAVLIRLPYENIEEACYFYYPKALIKEKKGKKYLIFMWEKPFVRIYYREGKRGKRKYIYTNEDRSLREIMYDFEDRTPTHYEQKTEYFKRRASKITIQKVEVPDDLRDE
>CP019306.1|AYV94732.1|644636_645833_-|helicase
MIYEMSKEQLEAVEKLKKLKVGALFMETGTGKTMTALQLFNDRFQANKTNHLIWLAPLNTKDNFWKEVKKYDFENLPITFYGIESIRQSGRIFLEVLNLAKELETSFIVLDESLKIKNYVQVSQRIIKIGRYCKYRLILNGTLISKNFLDLYNQLDFLSPKILNMSFLEFRNRFTDEIIVKKNGRELKRIVSDNANEEALFKMIDNYIYRCELVLNLEREYVKYYYDYFEKEEEYNKIKDRMLDDLERGGFHFLEYAQKLQSIYAVTEDKKKVFEEILKEYPKCIVFCKFIESQEYLKEKYPNILVLSYQKHSFGLNLQEYNVIVFWDKTFDYATIEQAEARIFRIGQTKSCTYIRMQCDCGLDKMIAGNICKKGNMLENLKIEFMKQIEERKKASLT
>CP019306.1|AYV94731.1|643353_644640_+|hypothetical-protein
MKKIKSKFSLKQKNFIKELLKLHKTIIMDLLVDNFSQTDLSILFKLDKDYNENILKVFTEILDFSEKGAFYFNKLQKINNSRTEKYMSYSIEELKKEFEKDYFIPERGDGIAPEMILLYYNSNNVPKDSVYAFCESFYLKTLENYDTKQDEKLQEIYNDCTQMTSYMIELEHYLNGKYIGNISDEELYKKFLAEKIEGGYKVRRGLLDFAYKYLEQIFETHYKAEKSYILLQTYLQKIAAMYEEWQNKTPEISSVTKENQSLKNKVELLQRELELSLEKKIIVTNDEDLIARNKELEKENYYLKYQNEKLQLKLQELENELNINKTIVEELEISQEIPPKDPKMNPKNIVVLGGKWTYEKIKSSNLPITFIRSEDILKSMSGIKKYDLIIFDTSRNSHIFFNKLKSVTHNFYLISHSSIEEIQKIIQG
>CP019306.1|AYV94730.1|642755_643241_-|chromosome-partitioning-protein-ParB
MKIEKRKLETLKPYANNAKEHPEWQIEQIKESIKRFGFNDPIAIDEQGNIIEGHGRYLASIQLELKEVDCIVLGHLTELEKKAYIIAHNKLTMNTGFDLSILEEELSNLKENKIDLVITGFSEYELETLLSSNELELDEVLSDDEKSKQEEKRCPHCGGIL
>CP019306.1|AYV94729.1|641955_642759_-|hypothetical-protein
MNLYLASLENDYVTIETMIDVKPLFVLGSFHYLQKLKPGILQQYFSYINSDDCKGFILDSGAFSMLNAKGGAESFLKNLDDYIENYIEFIKFWNVKNFIELDIDPLVGYSKVLKIREKIEKEVGRKSIPVWHISRGINEWKNTVKLYEYVAIGGIVTKEIKKKDYKKIFLPLLKIARSEKCNVHGLGFTGKEINDFPFFSCDSSTWTTINRFGSMPIFSITEKCIKNKSISEKRKIKLGNETRMKLTKYSIMEWKKFQIFLFKGEAN
>CP019306.1|AYV94738.1|649821_650064_+|hypothetical-protein
MLTTLDSLKQSERQINMEDMKKRFSNCTNDEIDKSSEITHVHSISKEACRIYVEIVKSLIINKNLKDILENLECTKNFQD
>CP019306.1|AYV94739.1|650891_652073_+|ISL3-family-transposase
MYSKVLHATLTKDTCACPHCHSQTTVKNGFKTTKVRYLPFQNYPIIIALKKQRFLCKECHHSFTLETPIVKKYASISQTLKLSVLNSLQENMSLSLIAKQHRISIPTVQRILKQGYLSYEISKKSLPKVLCFDEFKSTKDSDGAMSFLFMDGISHKILDIVENRKLPALEDYFSRFSYQARSQVKYIVMDMYSPYIQLAKRCFPKANIVLDTFHIVQLVNRAFNQTRIREMNQEKTKNPKLYRMLKRDWKLYLQDFLTLSESRKYCHSLKQLISPSEKVDYVMSKKENLRQDYYFYQDILYAVKRKDFRLFESYLERWKKKLSSKMQTAWKTLRKYRKYIRNSLETSYTNGALEGMNNFIKSVKRVAFGFRRFSHFRQRILIIQGIAQINPNF
>CP019306.1|AYV94740.1|652723_654436_+|arginine--tRNA-ligase
MLLVNKELSKILTSTVEKLYADKEMKEVEIAPATNEKFGDFQCNFAMMNSKIIGKNPRMIAEEIQKNLVENEVIEKLEIAGPGFINIFLKEAYLSTFIKKIGKERFDFSFLNRKGDVVIDFSSPNIAKRMHIGHLRSTIIGDSICRIYRYLGYHVIGDNHIGDWGTQFGKLIIGYRKWLDQDAYKKNAIEELERVYVKFSQESEEHPELEEEARLELKKLQDGDEENYNLWKEFIQVSMEEYEKLYSRLDIHFDTFYGESFYHPIMPEVVKELVERGIAKEDDGAKVVFFPEEENLFPCIVQKKDGAFLYATSDIATVKFRLHTYDVNRLIYLTDERQQDHFKQFFRITEMLGWNVEKYHVWFGIMRFADGVFSTRKGNVIRLEELLDEGKRRAYEIVQEKNPSLPEEEKQHIAEVVGVGAIKYADLSQNRQSPIIFEWDKILSFEGNTAPYLQYSYARVQSILDKAKNLGKEATEDVVLVLQDKYERSLANYMTIFPSSVLKAAETCKPNLIADYLYDLSKKLNSFYNNCPILNQEEEILKSRAYLAKQAGEVIKQGLNLLGIQTLDRM
>CP019306.1|AYV94741.1|654622_655591_+|thiamine-ABC-transporter-substrate-binding-protein
MKKIIVGSLLLLSSGVFAEEIVVYGPSTSKWIGKKYGPVFEKMTGDTIKYVSLDGVVQRLTLEKINPKADIVVGLTPVDIEVAKKHGVIQKYKPQNVEKIKKEIQYDKEYYAVPYDYGMLAINYDKTKIKNPPKNLEALGRMKKQLLIENPNTSNTGAEILQWSLALYGKNWKKFWTTIQPAIYNVEPGWEEAFAKFTAGEAPMMVGYATSDIWFAQDDSQKDRYASFYLEDGNYQYVESAALVAKKEVKAGAKKFMEAVLGEEFQTMTAAKNYMFPVTAVTLGKEFDSVPRTEKKVQFMANKEVVEHLANYKKEAVQILKK
>CP019306.1|AYV94742.1|655885_656791_+|aspartate-carbamoyltransferase
MRNFISIQDLSRQDILDLLVLAKELKEKPEPDLLKGKIVATLFFEPSTRTRLSFTSAAYRIGANVLGFDSIQGTSVMKGESFEDTIRMVSSYSDVIVIRHPQDGTAQRAANISSVPVINAGDGKNEHPSQTLLDLYTIQEELGSLEEKKIAFVGDLKYGRTVHSLTRAMKHFRAKFYFVAPDSIQMPQYLLQELEEAGLEYSLHRHYEEILSEIDILYMTRIQKERFEDPKEFEKVESAYRIEKEDIVGRCQEHMIILHPLPRVDEIAVSVDECKHARYFQQAANGVPVREVMIALAVGKK
>CP019306.1|AYV94743.1|656800_657601_+|dihydroorotate-dehydrogenase-electron-transfer-subunit
MYLRDCIVRENSCIASSYYRMVVEIPEELLESKPGQFFMLKSLQDSFSLRRPISIHQLNKKERTMEFYYEVKGRGTKSLSMFKEGESISLQGPLGHGFSLVKKKKVLVLGGGMGIAPMKYLLDALKEENEVTFVAGGRNQEAIEILDSFSFQKLRAYITTDDGSVGMKGNVVMKLKELLESSSYDQIYVCGPHGMMLAAAEVAQEKEVSCEISLENRMACGVKVCVGCSIQTVEGMKKVCHDGPVFDSKMIVNYEPKEKSTICCGN
>CP019306.1|AYV94744.1|657610_658531_+|dihydroorotate-dehydrogenase
MSCLETKFLGISMKNPLVTSSGCFGFGKEYQDYFDPNQLGGIVLKGITLEAREGNHGVRIAETPGGMLNCVGLENPGIDVFEREIIPNLRREGVTTSLIANINGKTMEEYMEIAKRVDNIEEVAMIELNISCPNVKDGGMAFGANPEVAGAVTREVRKITKKPLIVKLSPNVTDIAMIAKIVEENGADAVSLINTVLGMAIDVKSKKPLLGNVFGGMSGGAVKPIALRMIYQVYEAVTIPIVGMGGILNGTDALEFLMAGASLLSIGTGFFINPMVSVEVEKTLRDYCQQENIKNIQEIVGIAHRR
>CP019306.1|AYV94745.1|658535_659252_+|orotidine-5'-phosphate-decarboxylase
MDAREKIIIALDFPTEEKAIACVESLGEEAIFYKVGLELFLNSQGRILEYLREKQKKIFLDLKFHDIPNTTAMASVFAAKEEVAMFNVHASGGKKMMKKVMEETKKINEVASVIAVTVLTSFSEEDIQTLFQSKLSLQELAIHFASLAKEAGLSGVVCSPWEASEIKKACGERFQTVCPGVRPKWSANNDQERIMTPKEAVQHGCDYLVIGRPVTKHENPKEAMRLIVKEVKEGLQLC
>CP019306.1|AYV94746.1|659245_660463_+|dihydroorotase
MLVKNAKIIMGTEEIIVDILIQDGKFAKVGRNLSEHSEEEILDAKGHYVLPGIIDVHTHMRTPGFTQKEDVSSGSKAAIRGGVTSFFDMPNTNPATVTKEALEEKRKIYEGNSYADYAFYFGGTCFDNHVEVQKTVEETVATKIFLNVSTGDMLIEDDRILENIFRASNRVAVHAEEDMVAKAIQLARKTKKPLYLCHISLEKELEYIREAKEMGVEVYGEVTPHHLFLNEEDREQTEETKLFLRTKPELKTRKDNEALWKALQYGILDTIGTDHAPHLLEEKKAKLTFGMPSVEHSLEMMWKGVQEGKITVSRLQEVMCENPAKIFGLKKKGKIAVGYDADFVIVDETDHSEIQQEEIISKAAWSPYIKQKRGCKVLTTVLRGEIIYQEGKFGEKRGREILKYD
>CP019306.1|AYV94747.1|660455_661079_+|orotate-phosphoribosyltransferase
MTRKEAIAQVLLSTGAVKLNVKEPFTFVSGIKSPIYCDNRQMIAYPEEREVIIQGFQEALEGKEYDVLAGTATAGIPWAAFLAHSLQKPMSYIRGEKKSHGAGKQIEGASVEGKRVIVIEDLISTGGSSIKAVEAAYAEGAVSVEVIAIFSYEFPKAYQQFGEKKIAWQSLSNFEVLIHKAEEMNYVTEEERNIAADWNQHADTWGK

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Crispr_ID: CP019306_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP019306_2

1472450-1472543

Orphan

Consensus_repeat	Method
AGTTATTCTTTTACAATATTTTAAATTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP019306_2

>merge|CP019306|2|1472450-1472543|CRISPRCasFinder
AGTTATTCTTTTACAATATTTTAAATTCTACGTTTTTTAAATTTGTCGTATTCCCCCTCCTACAAAAGTTATTCTTTTACAATATTTTAAATTC

>CP019306|2|2|1472450-1472543|CRISPRCasFinder
AGTTATTCTTTTACAATATTTTAAATTC	TACGTTTTTTAAATTTGTCGTATTCCCCCTCCTACAAA
AGTTATTCTTTTACAATATTTTAAATTC

Protein	Signature genes	Signature genes Name	Protein_function
CP019306.1\|AYV95446.1\|1474004_1475423_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
CP019306.1\|AYV95438.1\|1463703_1465014_+\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|225995
CP019306.1\|AYV95449.1\|1476852_1477725_-\|N-acetylneuraminate-lyase	unknown	unknown	gnl\|CDD\|179749
CP019306.1\|AYV95436.1\|1461215_1462352_-\|haloacid-dehalogenase-like-hydrolase	unknown	unknown	unknown
CP019306.1\|AYV95452.1\|1480498_1481488_-\|DctP-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|270390
CP019306.1\|AYV95444.1\|1471667_1472381_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238119
CP019306.1\|AYV95451.1\|1478627_1480481_-\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|224509
CP019306.1\|AYV95442.1\|1469258_1469720_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
CP019306.1\|AYV95445.1\|1472663_1473971_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
CP019306.1\|AYV95448.1\|1476164_1476842_-\|N-acetylmannosamine-6-phosphate-2-epimerase	unknown	unknown	gnl\|CDD\|234907
CP019306.1\|AYV95441.1\|1468660_1469203_-\|ClbS/DfsB-family-four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|377957
CP019306.1\|AYV95437.1\|1462839_1463025_-\|hypothetical-protein	unknown	unknown	unknown
CP019306.1\|AYV95454.1\|1482512_1483622_-\|cyclically-permuted-mutarotase-family-protein	unknown	unknown	gnl\|CDD\|274642
CP019306.1\|AYV95447.1\|1475556_1476018_-\|DUF386-family-protein	unknown	unknown	gnl\|CDD\|225345
CP019306.1\|AYV95453.1\|1481501_1482509_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
CP019306.1\|AYV95440.1\|1467863_1468394_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP019306.1\|AYV95450.1\|1477721_1478624_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
CP019306.1\|AYV95435.1\|1460274_1461183_-\|N-acetylmuramic-acid-6-phosphate-etherase	unknown	unknown	gnl\|CDD\|235467
CP019306.1\|AYV95443.1\|1470299_1471652_-\|cell-envelope-integrity-protein-CreD	unknown	unknown	gnl\|CDD\|377608
CP019306.1\|AYV95439.1\|1466096_1467635_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614

Protein	Function_ID	Function_description	E-value
CP019306.1\|AYV95446.1\|1474004_1475423_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
CP019306.1\|AYV95438.1\|1463703_1465014_+\|ISL3-family-transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.08886e-76
CP019306.1\|AYV95449.1\|1476852_1477725_-\|N-acetylneuraminate-lyase	gnl\|CDD\|179749	PRK04147, PRK04147, N-acetylneuraminate lyase; Provisional.	4.30812e-177
CP019306.1\|AYV95447.1\|1475556_1476018_-\|DUF386-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	4.01218e-35
CP019306.1\|AYV95452.1\|1480498_1481488_-\|DctP-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|270390	cd13672, PBP2_TRAP_Siap, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent Periplasmic transport system (SiaP); the type 2 periplasmic-binding protein fold. This subfamily represents the periplasmic-binding component of TRAP transport system SiaP, a sialic acid binding virulence factor. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.87523e-131
CP019306.1\|AYV95444.1\|1471667_1472381_-\|VWA-domain-containing-protein	gnl\|CDD\|238119	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.	0.000132287
CP019306.1\|AYV95451.1\|1478627_1480481_-\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	4.4078e-148
CP019306.1\|AYV95442.1\|1469258_1469720_-\|N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.35344e-08
CP019306.1\|AYV95445.1\|1472663_1473971_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP019306.1\|AYV95448.1\|1476164_1476842_-\|N-acetylmannosamine-6-phosphate-2-epimerase	gnl\|CDD\|234907	PRK01130, PRK01130, putative N-acetylmannosamine-6-phosphate 2-epimerase.	7.23168e-124
CP019306.1\|AYV95441.1\|1468660_1469203_-\|ClbS/DfsB-family-four-helix-bundle-protein	gnl\|CDD\|377957	pfam08020, DUF1706, Protein of unknown function (DUF1706). This family contains many hypothetical proteins from bacteria and yeast.	6.22872e-68
CP019306.1\|AYV95454.1\|1482512_1483622_-\|cyclically-permuted-mutarotase-family-protein	gnl\|CDD\|274642	TIGR03548, mutarot_permut, cyclically-permuted mutarotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.	8.66256e-136
CP019306.1\|AYV95453.1\|1481501_1482509_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	8.01503e-29
CP019306.1\|AYV95440.1\|1467863_1468394_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.38288e-14
CP019306.1\|AYV95450.1\|1477721_1478624_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	3.85478e-67
CP019306.1\|AYV95435.1\|1460274_1461183_-\|N-acetylmuramic-acid-6-phosphate-etherase	gnl\|CDD\|235467	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed.	3.66377e-158
CP019306.1\|AYV95443.1\|1470299_1471652_-\|cell-envelope-integrity-protein-CreD	gnl\|CDD\|377608	pfam06123, CreD, Inner membrane protein CreD. This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with an Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA.	1.79421e-149
CP019306.1\|AYV95439.1\|1466096_1467635_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0

>CP019306.1|AYV95444.1|1471667_1472381_-|VWA-domain-containing-protein
MKKVIAGILVVFSLVACANVNLEKGKKNRSMELVFILDRSGSMSGLEQDTIGGYNSMLKKQKEEKGEVFVTTVLFDDKYEMLYHHKPIEELSNMTEKEYFVRGSTALYDAIGKTVVAVNREQSVAEKKVDQVLFVITTDGMENASQEFTAKKVKDLIETQKKEKKWEFLFLGANIDAIKTAESFGIEKEKAVNYHADSLGTQKNYKVLGEAVLEMRAGQELKGNWKQEIEEDYENRK
>CP019306.1|AYV95443.1|1470299_1471652_-|cell-envelope-integrity-protein-CreD
MQNSEMKSNRLLKNPLLTKVFALFIMIVLLQIPLYMVGDLIRERGYLYEETSAKIGNEWGKEQRIAAPFLTVVYPKKSNTEKIQKTVILPDTLEANISLKNEERKRGIYRATVYNANASIQGYFDRNKIPKDPNVEIYLSFGLTDTKAILKVNQYSIGKDQNLKLESGTRAEPFIAKGISSPLSKEDWKEHENIPFHIDIDFRGSGEISVLPFGEMNTVNVSSSWTSPSFTGILPSSREITKEGFYGKWEVTHLVRNYPQVIPVSEEMNYFDFVSEGERKDFESYGVYETKDTNAIRVELFNPVTNYTQVARACKYGILFIMLSIIIVYIFEVASRQFTHYIQYGVVGISLVLFYLLLLSLSEHFPFGISYLLSSLAIIVPNSLYMMSLTRNKKFALGMFVFLTGVYAVLYSILRMEQYALLTGTILILGVLYVIMYLTRRLDIYFKEEE
>CP019306.1|AYV95442.1|1469258_1469720_-|N-acetyltransferase
MKPEGDIEIKEIKENKKQFLSLLLLADEQENMIEQYIDRGIMYILDDNGIKCECVVTDEGNNILEIKNIATVPAYQRQGYAKILIDFIARTYRRKYSILQVGTGDSPSMIAFYEKCGFIRSHSIPNFFIDNYEHLIYEEGVLLVDMIYLQKKL
>CP019306.1|AYV95441.1|1468660_1469203_-|ClbS/DfsB-family-four-helix-bundle-protein
MARPATKLDFISVTNENYEKLLLLMSQLTEEELSTTFDFSNDEKKKEAHWKRDKNLRDVLIHLYEWQQLLLSWVHANQNGEKKSFLPEPYNWKTYGEMNVAFWKKHQNTTLEEAKTMLQKSHEEVLNLAESFSNEELFSKGIFQWVGGSTLGSYFVSATSSHYDWAIKKLKAHQKNCKKK
>CP019306.1|AYV95440.1|1467863_1468394_-|GNAT-family-N-acetyltransferase
MQIRKAKLEDLDSLVNIHSLTWQAAYKHIFSDTLLKSLRQDNKFLERKEKFKKDIEKNSSIDIFLLETFFNGKMEKVGFLVLSSLKLQKRNNHIAEIIALYILPEFWGQGFGKVMMEFSIERFRRFHAKEIILWVLKDNKRARSFYKKFGFVSTGEEKELPMEHVPEIEYKLIIKN
>CP019306.1|AYV95439.1|1466096_1467635_-|glutamine-hydrolyzing-GMP-synthase
MKECSIVILDFGSQYNQLIARRVREMGVYAEVVPFYEPVDKILARKPKGIILSGGPASVYAEGAPTLDKTLFDHNIPVLGLCYGMQLVTHLFGGEVARAEKQEFGKAELIIDEKEAALFDNIPNNTKVWMSHGDHVTRIAEGFHAIAHTDSCIAAVVNPEKNIYAFQFHPEVTHSEHGRDMLQNFVLEVAKCEKNWSMDNYIESTIKVIQEKVGDKKVILGLSGGVDSSVAATLIHKAIGDQLTCIFVDTGLLRKNEAKTVMEVYSEHFHMNIKCVNAEERFLSKLKGVSDPEQKRKIIGKEFIEVFNEEAKKFEDAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPEDMKFQLLEPLRELFKDEVREVGRQLGIPHHMIDRHPFPGPGLGVRILGDITKEKADILREADDIFIEELRKAGLYGKVSQAFVVLLPVQSVGVMGDERTYEYVAALRSVNTIDFMTATWSHLPFEFLEKVSNRILNEVKGINRLTYDISSKPPATIEWE
>CP019306.1|AYV95438.1|1463703_1465014_+|ISL3-family-transposase
MAKPNLKGVISLSHSDFIKVLFDLQDPNLYFLEDDIQRVQKKQIYSKVLHATLTKDTCACPHCHSQTTVKNGFKTSKVRYLPFQNYSIIIALKKQRFLCKECHHSFTLETPIVKKYASISQSLKLSVLNSLQENMSLSLIAKQHRISIPTVQRILKQGYLPYEISKKSLPKVLCFDEFKSTKDSDGAMSFLFMDGSSHKILDIVENRKLPALEDYFSKFSYQARSQVKYIVMDMYSPYIQLAKRYFPKANIVLDTFHIVQLVNRAFNQTRIREMNQEKTKNPKLYRMLKRDWKLYLQDFLTLSESRKYCHSLKQLISPSEKVDYVMSKKENLRQDYYFYQDMLYAVKRKDFRLFESYLERWKKKLSSKMQTAWKTLRKYRKYIRNTLETSYTNGALEGMNNFIKSVKRVAFGFRKFSHFRQRILIIQGIAQINPNF
>CP019306.1|AYV95437.1|1462839_1463025_-|hypothetical-protein
MKEGKRCVGRPIGWRKENPRIMKSMRLDATLLKKLQKVAPEKKFVEKIEEGILLFLEKYEK
>CP019306.1|AYV95436.1|1461215_1462352_-|haloacid-dehalogenase-like-hydrolase
MDKNECKKEIVLAICYDFDKTLSPDDMQAQGFIQSLGREVEEFWNDSNKLANDNEMDQNLAWMYKMTKESRGKHIFNRNMLTDYGSKIALYSGVETWFDRINQYGKEQGVEVEHYIISSGLKEMIEGTKVAKYFKKIYASSFYYDDCGLAVWPAQCVNYTNKTQFLFRIKKGTLNINDSKVNDYLEDEACRVPFRNMVYIGDSDTDVPCMKLVNINGGYSIGVYSGEFKNKVFKMISEDRIKYFAKADYTEDSELEKLIKHIINRTVVNEILEMKTVNCINEMKSERQGMEKEEIIREDLIDKLNESSSFSSTHEIIRLMSAINGWSNTQMKRILEIAIRNSQVRYILKDKDVEEFYSKIYPKVDSEYSKQVIKILKE
>CP019306.1|AYV95435.1|1460274_1461183_-|N-acetylmuramic-acid-6-phosphate-etherase
MIDLSKMTTEKRNPNSSNLSSLSIREAIELMNHEDYKVVDCVKEQISNIENVIQICTKALQKKGRIIYIGAGTSGRLGLLDAVECPPTFGVDYNTVVGLIAGGERAFIKAVEGAEDSKEQAVEDLKGINFSKEDVLVGIAASGRTPYVIGAINYAKEIFAEVCAVVCNKNSEISKICKNIVEVEVGPEILTGSTRLKAGTATKMVLNMISTISMVNIGKVYKNYMVDVKTSNQKLMVRAKNIVKEVTGCSEEEANFVLEKSEGSAKIAIVMLLLNCDVNKAKEKLEKVNGRIQDLKRSDHYD
>CP019306.1|AYV95445.1|1472663_1473971_-|phosphopyruvate-hydratase
MTRIYDVVAREILDSRGNPTVEVDVVLECGAKGRAAVPSGASTGSHEAVELRDGDKARYLGKGVLKAVQNVNTEIKECLVGMNALDQVAVDKAMIALDGTPNKGRLGANAILGVSLAVAKAAAEALGQPLYKYLGGVNAKELPLPMMNILNGGSHADSAVDVQEFMIQPVGAKTFAEAMQMGCEVFHHLGKLLKANGDSTNVGNEGGYAPAKIQGTEGALDLISEAVKAAGYELGKDITFAMDAASSEFAKEADGKYSYHFEREGGIVRSTEEMVAWYQSLVEKYPIVSIEDGLAEDDWAGWQKLTEVLGEKVQLVGDDLFVTNTERLQKGIEFKAGNSILIKLNQIGTLTETLDAIEMAKRAGMTAVISHRSGETEDATIADIAVATNAGQIKTGSTSRTDRMAKYNQLLRIEQELGDMAQYRGMKVFYNIDRK
>CP019306.1|AYV95446.1|1474004_1475423_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTEAKETLKSLLQSGMNVMRLNFSHGDYAEHGTRIINFREAMKETGIRAALLLDTKGPEIRTIKLEGGKDVSITAGQTFTFTTDKSVIGNQNKVAVTYEGFPKDLKVGDIVLVDDGLLSMRVTKISGNEVECIAENSGDLGENKGINLPNVKVNLPALAEKDIQDLKFGCEQGVDFIAASFIRKADDVKAVRKVLEENGGAGIQIISKIENQEGLDNFEEILEASDGIMVARGDLGVEIPVEEVPFAQKMMIQRCNAVGKVVITATQMLDSMIKNPRPTRAEANDVANAIIDGTDAVMLSGETAKGKYPLEAVTVMKRIAEKTDPLILPVEDAHLEEEEITVTTAVAKGTADVAEMIGAKVIVVATASGRAARDMRRYFPSADILAITNNEKTANQLVLTRGVTSYVDGTATSLDEFYALAEKAVRELGLATAGDVIIATCGEQVYINGTTNSVKVIHIK
>CP019306.1|AYV95447.1|1475556_1476018_-|DUF386-family-protein
MIYDKIENIGRYLGISEYLDQAIRYIMTGNYRKAKYGKNIVSGEHIYYNCPEGAMAKNIEGMDYEYHRTYIDIHIPLQGKENIAFFSMETGKEVKAYDQENDYGLYSGKAEGKLCIEEGEFLMLFPEEVHLALMKVEEEVTPIEKVIFKVRAK
>CP019306.1|AYV95448.1|1476164_1476842_-|N-acetylmannosamine-6-phosphate-2-epimerase
MKERMEALRGKLIVSCQALPEEPLHSSYIMSRMAYAAYVGGASGIRANTVSDIREIKKTVDLPIIGIIKEVYGENPVYITPTMKEISALVAEGVDIIAIDATKRERPDGNTLENLMKAAKEKYPNQLFMADISSVEEAIEAERLGFDFVGTTLVGYTEYTKGNLPLVELEKVIQAVSLPVIGEGNLDTPEKAKKALDLGAFAVVVGGAITRPQQITKKFVDEMSK
>CP019306.1|AYV95449.1|1476852_1477725_-|N-acetylneuraminate-lyase
MKGIFSALMVPYNLDGTINEKGLRELVRHNIDVMKVDGLYVGGSTGENFMISTEEKKEVFRIAMEEAKNEVQMMAQVGSINVKESVELGKYATELGYPCLSAVTPFYYKFSFEEIKEYYETIVRETQNNMVIYSIPFLTGVNMDVAQFGELFANPKIIGVKFTAGDFYLLERMRKAYPDKLILSGFDEMLLPAVVMGVDGAIGSTYNVNGIRAKEIFQLGKEGNIAEALELQHVTNDLIEGILGNGLYPTIKEILKCQGVHAGICRKPMAATTEEQTKVAKELYQKYLAK
>CP019306.1|AYV95450.1|1477721_1478624_-|ROK-family-protein
MKQDKIIAIDIGGTNIKYALVSSGGEILSSGNLPTEAEKGMETLLFKLDELIQTYLSEEILGLAVSATGQIDSMQGKVVGGNPIIPGWIGCKLVKILEEKYHLPCVLENDVNCAALGEAWLGAGKGKKDFLCLTIGTGIGGGIILNHQLYRGASSVAGEFGKLYLQNKQEVYEKYASMSALVQKVQEKTGKHWNGKKIFDVYWQGEENIVSIVDEWIHDIAEGLKVLLYLWNPGCIILGGAVTHQGEAFQKKIEEELQKQITPNYLECLELKFANLGNHAGLLGAAFLLLDKMKQEEVKE
>CP019306.1|AYV95451.1|1478627_1480481_-|TRAP-transporter-large-permease-subunit
MKFFNKLEEWIGGTLFVGMFIVLVLQIISRQILDDPLIWSEELARLFFVYVGMLGISMGIRTQSHVMIDFVYARLPKKLQKVIFTGIQIIIFLCITSFSYFGYLLIEKKADIELVSLGISAKWMYIALPVISILMLIRFFQAYQENWEKEKVLISPKIILGFMILFMALLIFQPSVFKIFKMTQYFKLRGNSVYVALVLWLILIFAGVPVGWSLLASSMAYFSMTKWAVAYFASSKFVDSVDSFSLLSVPFFILTGILMNGSGITERIFYFAKASLGHYTGGMGHVNVAASLIFSGMSGSAIADAGGLGQLEIKAMRDEGYDDDICGGITAASCIIGPLVPPSISMIIYGVIANQSIAKLFLAGFVPGVLTTIALMIMNYFVCKKRGYKKAKKCTRKERWEAFKKAFWALLTPIIIIGGIFSGMFTPTEAAVVAALYSVILGMFIYKELTWKGLFQHCVEAMAISGVTVLMIITVTFFGDMIAREQVAMKIAELFIQFASSPLTVLVMINLLLLFLGMFIDALALQFLVLPMLIPVAEQVGIDLVFFGVMTTLNMMIGILTPPMGMALFVVAQVGKMPVSTVTKGVLPFLLPIFITLVVITLFPQIIIFLPNLIMGA
>CP019306.1|AYV95452.1|1480498_1481488_-|DctP-family-TRAP-transporter-solute-binding-subunit
MNLKKLVAMGLVFGAMATAALAAEYELKMGMTAGTSSNEYKAAQFFAKQLKEKSKGEIELKLYPDAQLGKNDLDMMGQLEGGVLDFTFAEMGRFSTFYPEAEVYTLPYMIKNFKHMQNATFNTKFGKDLLKKIETKKNIIVLSQAYNGTRQTSSNKAINSIKDMKGLKLRVPNAPANLAFAKYSGAAPTPMAFSEVYLALQTNSVDAQENPLSAVKAQKFYEVQKYIAMTNHILNDQLYLVSASTMEDLPANLQKVVKEAAIEAAKYHTQLFEKEEASLKDFFKQKGVKITEPKLDEFRAAMKPFYDQYTKKNGKIGQEALKEIQAAAK
>CP019306.1|AYV95453.1|1481501_1482509_-|LacI-family-transcriptional-regulator
MMTQKKIAEMLGISRTTVARALQENSSIKEETRKKVLDLIQETKYEKNYLGSSLAGRKKIVHAFVVKSKNEFYTGEIQRGMQKIQQKYAKYRLEIEVHLHDIHQAQEQVAALENILSQEKQVDGILIVPLEKKKIYHVIKPHLKKIPVISLTMQLHSDIAHIGTDYHRQGRIVANILAHCLRRGESLVILDNGDDKLSTQDYLEGFCERISEEELDILGPYSCQGIQESVELLKKLSQEKKIRGVFSNRYAQDIMKELPDSWFVGKHIVVNGMSEEIEQLLLEKKIIATVTEEVYEEASFAGKLLFQTLYQNKKIPKIWSKTNSKIIYLENLEKK
>CP019306.1|AYV95454.1|1482512_1483622_-|cyclically-permuted-mutarotase-family-protein
MKKLLSILFFTCSCFSFAEHRISWEAVGALPAQKSYDKNIGTAGLLQGMIDDYVIVGGGANFPIKPLTEGGSKVTHKDIYLLKESKNGLDLVEQIQWNTPIGYGASVSTGKEIYYLGGSPEAAHNKDVLKVSVKNGKMKIEKVAELMLGFENGVATYQNGKIYYGVGKIEHEEGKLKNSNRFFVLDLKTGENKELAAFPGEARQQTVGQVLNGKFYVFSGGSSVSYIDGYAYDFEKNVWEKVADVVVNGEKILLLGANSVKISEDEMLVIGGFNHDLWNEASDKLSNLKDKELADYKAQYFGKEPFRYEWNRKILVFNAKENRWRSIGEVPFDAPCGAALLKHGNILYSINGEIKPGVRTPRIFRGEFR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP019306_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP019306_3

1552244-1552343

Orphan

Consensus_repeat	Method
TTCCACCTTTTTATTTCGAGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP019306_3

>merge|CP019306|3|1552244-1552343|CRISPRCasFinder
TTCCACCTTTTTATTTCGAGTTTATCTTATCATAAATCGGCAAACTAATCAACAATAGATAAAAAATTCAGGCGGACTTCCACCATTTTATTTCGAGTTT

>CP019306|3|3|1552244-1552343|CRISPRCasFinder
TTCCACCTTTTTATTTCGAGTTT	ATCTTATCATAAATCGGCAAACTAATCAACAATAGATAAAAAATTCAGGCGGAC
TTCCACCATTTTATTTCGAGTTT

Protein	Signature genes	Signature genes Name	Protein_function
CP019306.1\|AYV95509.1\|1557697_1559662_-\|PASTA-domain-containing-protein	unknown	unknown	gnl\|CDD\|223839
CP019306.1\|AYV95497.1\|1544238_1545549_-\|D-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|235096
CP019306.1\|AYV95511.1\|1560845_1561190_-\|hypothetical-protein	unknown	unknown	unknown
CP019306.1\|AYV95500.1\|1547918_1548656_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
CP019306.1\|AYV95508.1\|1555424_1557701_-\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|224119
CP019306.1\|AYV95498.1\|1545566_1546916_-\|GntP-family-permease	unknown	unknown	gnl\|CDD\|225330
CP019306.1\|AYV95501.1\|1548652_1549210_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP019306.1\|AYV95496.1\|1543519_1544035_+\|flavodoxin	unknown	unknown	gnl\|CDD\|378898
CP019306.1\|AYV95513.1\|1563265_1563697_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274630
CP019306.1\|AYV95502.1\|1549310_1550636_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
CP019306.1\|AYV95512.1\|1561289_1563269_+\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|341474
CP019306.1\|AYV95495.1\|1542352_1542961_-\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|223881
CP019306.1\|AYV95506.1\|1554592_1554901_-\|septum-formation-initiator-family-protein	unknown	unknown	gnl\|CDD\|368217
CP019306.1\|AYV95504.1\|1553032_1553524_-\|hypothetical-protein	unknown	unknown	unknown
CP019306.1\|AYV95503.1\|1550915_1552211_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
CP019306.1\|AYV95505.1\|1553537_1554596_-\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236536
CP019306.1\|AYV95507.1\|1554887_1555409_-\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
CP019306.1\|AYV95510.1\|1559658_1560843_-\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|377085
CP019306.1\|AYV96248.1\|1542989_1543364_-\|DUF454-domain-containing-protein	unknown	unknown	gnl\|CDD\|377291
CP019306.1\|AYV95499.1\|1547298_1547853_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380339

Protein	Function_ID	Function_description	E-value
CP019306.1\|AYV95509.1\|1557697_1559662_-\|PASTA-domain-containing-protein	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	5.91372e-130
CP019306.1\|AYV95497.1\|1544238_1545549_-\|D-serine-ammonia-lyase	gnl\|CDD\|235096	PRK02991, PRK02991, D-serine dehydratase; Provisional.	0
CP019306.1\|AYV95512.1\|1561289_1563269_+\|3-dehydroquinate-synthase	gnl\|CDD\|341474	cd08195, DHQS, Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol condensation. The binding of substrates and ligands induces domain conformational changes. In some fungi and protozoa, this domain is fused with the other four domains in shikimate pathway and forms a penta-domain AROM protein, which catalyzes steps 2-6 in the shikimate pathway.	7.53455e-146
CP019306.1\|AYV95508.1\|1555424_1557701_-\|primosomal-protein-N'	gnl\|CDD\|224119	COG1198, PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].	0
CP019306.1\|AYV95498.1\|1545566_1546916_-\|GntP-family-permease	gnl\|CDD\|225330	COG2610, GntT, H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism].	7.29388e-108
CP019306.1\|AYV95501.1\|1548652_1549210_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.74518e-11
CP019306.1\|AYV95496.1\|1543519_1544035_+\|flavodoxin	gnl\|CDD\|378898	pfam12641, Flavodoxin_3, Flavodoxin domain. This family represents a flavodoxin domain.	9.99345e-55
CP019306.1\|AYV95513.1\|1563265_1563697_+\|hypothetical-protein	gnl\|CDD\|274630	TIGR03527, selenium_YedF, selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.	1.38145e-13
CP019306.1\|AYV95502.1\|1549310_1550636_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.95161e-44
CP019306.1\|AYV95495.1\|1542352_1542961_-\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|223881	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion].	6.86138e-37
CP019306.1\|AYV95506.1\|1554592_1554901_-\|septum-formation-initiator-family-protein	gnl\|CDD\|368217	pfam04977, DivIC, Septum formation initiator. DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.	4.85393e-06
CP019306.1\|AYV95500.1\|1547918_1548656_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	2.77823e-83
CP019306.1\|AYV95503.1\|1550915_1552211_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	2.64636e-59
CP019306.1\|AYV95505.1\|1553537_1554596_-\|class-II-fructose-bisphosphatase	gnl\|CDD\|236536	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.	0
CP019306.1\|AYV95507.1\|1554887_1555409_-\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	8.32756e-70
CP019306.1\|AYV95510.1\|1559658_1560843_-\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	4.52173e-44
CP019306.1\|AYV96248.1\|1542989_1543364_-\|DUF454-domain-containing-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	3.83199e-49
CP019306.1\|AYV95499.1\|1547298_1547853_+\|cupin-domain-containing-protein	gnl\|CDD\|380339	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain. This family contains transcriptional regulators containing an N-terminal XRE (Xenobiotic Response Element) family helix-turn-helix (HTH) DNA-binding domain and a C-terminal cupin domain. Included in this family is Escherichia coli transcription factor SutR (YdcN) that plays a regulatory role in sulfur utilization; it regulates a set of genes involved in the generation of sulfate and its reduction, the synthesis of cysteine, the synthesis of enzymes containing Fe-S as cofactors, and the modification of tRNA with use of sulfur-containing substrates. This family belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	7.01415e-21

>CP019306.1|AYV95503.1|1550915_1552211_-|ATP-binding-protein
MIIKRDYYLKKIIDKRENGRIKIITGIRRCGKSYLLFHLYQEYLLSKGVKEEQIISIALDEIDNLEYRNPFRLNEYIKEKTKNRNQKYYIFIDEIQLSVAVSNPYIDSKEKNVTFVDVLLGLMKHSNLDIYVTGSNSKMLSSDVLTQFRDRGDEIHVNPLSFAEVYDLCENKELAFEHYTVYGGMPYIYSLKSDEEKNQYLKDLFQETYIKDILERNNIQNEKEVLELLLDFTSSAIGSLTNPTKLSRRFLSEKQIKISSNTISKYLSFFEEAYVIYHANRYDVKGSRYFSTPLKYYFADIGLRNARLNFRQVEDTHIMENIIYNDLLRRGYNIDVGVVEHDFKKDGNRKKVQLEVDFVINKGHQRYYIQSALNVDSTEKREQETASLKKINDAFKKIVIVRKRIIPKHDNDGILYIGVEDFLLNEAIIDL
>CP019306.1|AYV95502.1|1549310_1550636_-|ATP-binding-protein
MKRFIMNHLMEWKNSKYRKPLILKGIRQVGKTWVLKEFGKIYYENTAYFNFDEHMEYRQFFETTKDVKRILQNLMLISGEKIKPGKTLLIFDEIQDCPEVINSLKYFYENAPEYHITCAGSLLGITLEKPSSFPVGKIDFLNMYPMTFCEFLIANGDENLKLYLDSVEEIEKIPDAFYNPLYEKLKMYYITGGMPEAVYLWTKERDTEQMIKSLNNIIEAYERDFAKHPNIKEFPKISMIWKSIPSQLSRENKKFIYKVVKEGARAREYEDALQWLVNANLVSKVYRISAPKIPLSAYDDLSAFKIYMADVGILNRLSLLSPRAFGEGNRLFTEFKGALTENFILQSLIPQFDISPRYWSDNIHEVDFIIQKESDIFPIEVKAEKNTKSKSLFKFKEKYSEDIKLRVRFSFDNLTLDGDLLNIPLFMVDYTTKIIDIALKK
>CP019306.1|AYV95501.1|1548652_1549210_-|GNAT-family-N-acetyltransferase
MEFIQQEFLGKNQEIYTIKIAQEEDAKALLEHSKRVRGETDFLLTYPEELTMTEEEEREMLKSFQKTQRQFILCVYYKDKIIASAGIMPWMEKKKVLHRASFGICVEEKHWGNGIGKILTHNSILLAFELGYEQIELGVFSDNHRAKKMYYEFGFQEWGRIPKAYRLKDGSCHDEILMGFRKEWL
>CP019306.1|AYV95500.1|1547918_1548656_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MKALIGITGSIITCGGDDIFSAYERAYVNDDYISAVEKAGGIPIILPIVEEEENIKEMVSRVDAVLLSGGYDIDPSYWGEEIGRKYQRIYPRRDRYEMLVIRYAKEMQKPVLGICRGHQMINVAFGGSLYQDISEIPGAYIQHVQQANYYEATHGIIVEEDSFLAKSMGQKGRVNSYHHLAIKDLGESLRIVGKAPDGVIEAIEWITEEQFFVGVQFHPEMMHRHHVFALNLFQDFIQEVKRRKK
>CP019306.1|AYV95499.1|1547298_1547853_+|cupin-domain-containing-protein
MNYEINIGKTIKNIRISKGLLLKEVASKCDISSSMLSQIEKGNANPSLNTIKAIAQALEVPLFKFFINSEETKYTFHIVKKEERKRISTENVIYELLTPKVESKIKFMQMTLRKNAETSVRPMSHKGEEVAVLLEGKVELTIGNSSIILSPGDSVHIPAMAPHKWKNLQQETSIVLFSVTPPEF
>CP019306.1|AYV95498.1|1545566_1546916_-|GntP-family-permease
MGTSFTIIAILLSILLLVLLTIKMKLHPFFALTISAFFFGLVSGHSIPDIIGAYSEGLGGTIAGIGVVIAIGTVMGALLENSGAAETMAETILKMTGRKNADIGLAVTGYFVSIPVFCDSAFVLLSPLAKRISKDTGGSMTTMTVALAMGLHATHMLVPPTPGPLAVAGILGSNLGLVILCGMLVSIPVTIIAILAGRIFGKKYYFLPEIEEANSVGKTKKLPSAAMSFSPILLPIFLMLLRTIATLQSRPLGEGVLYRVVDSLGQTIVALFIGLVIAFFTYKSVYPNDKEVWTFDGIFGEALKTAGQIVLIVGAGGAFATVLKLSNLQEIVMNLFAGVSIGIIVPYIIGAIFRTAIGSGTVGMITAASMLLPLVDVLGFHSPMGLVIAMLACAAGGFMVFHGNDDFFWVVVSTSGMKPEVVYKVFPLISILQSFVALVCVLILKMIFL
>CP019306.1|AYV95497.1|1544238_1545549_-|D-serine-ammonia-lyase
MLKKTDVIQKLEKKEEMVWINPKKIDYKTYEENLPVSDEELLQAEKRLERFAPFLQKVFPETAPTKGIIESPLEEIFQMQKTLEEKYKVKIPGTLYLKMDSHLPVAGSIKARGGVYEVLKYAEELAMEAGLLKIEDNYAILAEDRFKKFFSKYKIQVGSTGNLGLSIGITSAALGFQVIVHMSADAKQWKKDMLRSKGVQVIEYDSDYGKAVEEGRKNSNLDPMSYFVDDEKSMNLFLGYTVAAKRLKKQLDEKEIIIDERHPLIVYIPCGVGGAPGGVAYGLKRIFKENVHIFFVEPTLAPCMLLGMESGLHEKISVNDIGIYGMTHADGLAVARPSGLIGRLMEPILSGIFTVQDYKLYDYLRCLDETENKRIEPSSCAAFEGVASLFNYEESKKYVDDFLGDTVKNAYHICWATGGSMVPEEDMKEFLKTYLK
>CP019306.1|AYV95496.1|1543519_1544035_+|flavodoxin
MKTVIIYSSLTGNTKKVCEVAFEHLQQEKQLIRVEEKDTVDWTKVENVIIGYWVDKGTADAKTKKFLSKLQNKNLYFIGTLGESPTSFHAEKCIRNVTKLCEKDNHFKGGILVRGKVSEDLKQKMDKFPLNIVHKFVPNMKQIVLDAEGHPNEEDFQRVIEFIEKTVNPNL
>CP019306.1|AYV96248.1|1542989_1543364_-|DUF454-domain-containing-protein
MIVIVKRNILLGIAWISLILGGIGIFLPLLPTTPFILLSAFCFQKSSERFHQWILNSPIFGKYIRDYQEQKGITLKNKIVAVTFMALGMSFSAYKVPNTYMRISLLVIFIAVSYHIFKIKTLKK
>CP019306.1|AYV95495.1|1542352_1542961_-|MotA/TolQ/ExbB-proton-channel-family-protein
MAYYFKVGGPILWVLFFMSIGALAIILERVVFFTRTEKKVDVDFKKNINDLISQGKVEEAIQLCESKKGSVAGSIRTFLKRAKKGQDVQDYESIIKEIMLESMTPLDRGLSSLEAIGSLAPMCGLLGTVTGMIKAFINISKMGAGDPTIVADGISEALVTTAAGLYVAIPVIAAYNIFSKIAARREDEVDKIVANIINIFRR
>CP019306.1|AYV95504.1|1553032_1553524_-|hypothetical-protein
MIFYEDFVKKIEELEGEELSFAEIESFGLGKKKKIGGYGIALPLILIACYEIFVAFFLKQYYLILIALVLFYFGIRQCRNMWAYRITLDTKEKHLLFQKMDIDLENLSSLQVREAKIGRKVIPVLDFITKDKKQMILPMYMERQVFLVRILQKILGVRFSIKK
>CP019306.1|AYV95505.1|1553537_1554596_-|class-II-fructose-bisphosphatase
MKRELALEFARVTEAAALAAHKWVGRGDKEAADQAAVDAMRTMLNRLAIDGEIVIGEGEIDEAPMLYIGEKVGRVYHEEEAKDEMEEGEVPYYTPVDIAVDPVEGTRMTAQGQANAVTVLAVAKKGSFLKAPDMYMEKLIVGPEAKGKIDLEKPLLENIENVAKALGKTLEEMMIVVLDKPRHTQIIKDLQKLGIKVYALPDGDVAGSILTCLVDSDVDMLYGIGGAPEGVISAAVIRALGGDMQARLKLRSEVKGVSLENDKISNFEKSRCEEMGLRVGEILRMDDLVKDDEVIFSATGITGGDLLSGIYRRGMIAKTQTLVVRGRSKTVRYINSVHNLEYKDPKILHLVK
>CP019306.1|AYV95506.1|1554592_1554901_-|septum-formation-initiator-family-protein
MAENKKKFSKGYLFLLLIFAYSMFGVIPQILKSQTKIEKIREEIKYLETKNQKERKEIEKYTKNIEELDNDYERERIARNRLQMIKPKEVIYRLNQRNQEEQ
>CP019306.1|AYV95507.1|1554887_1555409_-|peptide-deformylase
MIYEIKKYGDSVLRKIAEKVEEVNDEIREILRNMVETMYARDGVGLAAPQVGISLRMFVCDIGTPEESNVKKIINPLITPLTEETISVEEGCLSIPGIYKKVERIAKLKLEYQNEQGEFVEEILEGFPAIVVQHEYDHLEATLFVDRVSPMAKRMIAKKLQALKKETMKDGRE
>CP019306.1|AYV95508.1|1555424_1557701_-|primosomal-protein-N'
MMYYQVYLEKNRGLYTYVDEKEEYRIGDSVFVSFRNQKQVAYIIALDSRQEFPFRVLPILAKTDFPNIPPLLVQLARWMVRYYVSSYEAVLRNMIPRDLKIKKKIFYSLHSPASSEYPQKLLEYFREYSSVSRATLRKYLSLEEIKQGMGQQYLIEFEKNRFAWNLEKEKIGKIGKYFLQREQILAKKLEEKFSKAEIQEFLEKNYLEEKNLFETGVSSLHSFRQETSFREIELNEEQRKATFSIMQGKASFYLLKGVTGSGKTEVYLSLIRKAFQEGKGSIFLVPEISLTPQMVERFQGEFQENIAILHSRLSSKERAEEWIQLYHGKKKIVLGVRSAIFAPVQNLQYIIIDEEHESSYKQDVNPKYHARQVALKRAMLEGAKLILGSATPSIESYYYAKHGIYQLLELNQRYNQAKMPDIELVDMKEERDLFFSQRLLEEIRNTLLRKEQILLLLNRKGYSTYIQCQDCGHVEECNHCSIKMSYYASKRIYKCNYCGKVIKYTGRCSVCGSEHLVHSGKGIERVEEELKQYFPDISILRVDGDQKGKQFFEQAYYDFLQGKYQVMIGTQLIAKGLHFPNVTLVGVINADMILNFPDFRAGEKTYQLLAQVAGRAGREEKPGKVIIQTYQSEHYVIEKVKENDYEGFYEKEVEARDFLDYPPFSKMILIGLSSKNEEYLKQKAEEIFQMIPKDEADMYGPMPCLVYRVKDRYRYQIFMKGSRDNIEKYKKILRKVLSKYQTEEEIRISIDAEPLNMI
>CP019306.1|AYV95509.1|1557697_1559662_-|PASTA-domain-containing-protein
MKKNRFHSRLTGIMYFVCILFMCIGLRLCQIQLAKKAMYRSRILNQIEAKDEEIGERGNILDQSGKQLAFNKRQYTVIIDPSKIHINEDQFLKNLQDIAEKKILDLDASFFETLEKEFQANKKYKVIAKKIDDVTKEKIKECLSKIPEERKYLFFKKEIEREYYRKDIYETLVGMVRFTKDSKEKKAGVFGIESRYEPYLAGKILTRSKYYSRDKKKVLPTSMEWMYTNLNGNNVYLTLDNEINYILNDEIKAQYDALNAEEAYGIIMDPQNGKILGISTYTRNPKDLRNQVFQNQYEPGSIFKPLIVAAALDEGLIQKNSTFNIGNGSIVKYRHTIRESSRTTTGILTTTEVIKKSSNVGMVLISDRFTEEQFEKSLRKFGLYDKTGVDFPNEIKPYTTPHKKWDKLKKSNMAFGQGITVTPIQMATAFSAVVNGGKLFRPYLVEKIVDDDGVVLRRNIPKVVRQVIKPEVSEMLVGMLEETVAGGTGSRAKVEGYRVGGKTGTAQLSSNGRYLAHQYLASFVGFFPVENPQYVILVMILKPQAESVFGRYGGTASAPVVGNIIRRISKIKNVSSQEVSKIISTKKETLEEKPRPVLGEEMPDLKGLSPKEVMNLFQSTNYDIHIKGTGLVVQQEPAAGKSLEEVNKIEVILE
>CP019306.1|AYV95510.1|1559658_1560843_-|YihY/virulence-factor-BrkB-family-protein
MKREDFHEIYSGVGTSIKHALWKYKEANSNLWVTSLCYYTILSMIPIFAILFSIGTWLGLGEYLLKQIDSHSPLKGEAIELLLTFTDNLLTNARSGVLAGLGFLFLIWSLISMFSIVEKAFNDIWDIEGTRSFVRKISDYLTFFILLPTLILVSNASSLLIRNDFLSKILPYCSVLLFFMALFMVMPNTEVKWLPAFIASFFTSIMFSVFQYAFIYLQVLINTYNKIYGSFSVLFIFLIWLRIAWFLIILGAHLSYLLQNRDMNLYYDSLNIDEISFQSKFSLAVHILTEMVLRYQKEENLVTRADFIEKFHNVIAIDGVIRILKKGNFILEGKNEKQEKVYSLAKNLEKTKLEEVYFVISSYGKKLENIEYKVVSEKNLQTRLSELGGYEERE
>CP019306.1|AYV95511.1|1560845_1561190_-|hypothetical-protein
MKTIAAFFLLVSGIGFSMEIYPETYAMQKMIPQLEKGNRYTGSSPYEAMEHIVAVPMNANIRKALGTGDSSIHFIDSDGNMVKAGPEDYIIAPRSLSRIYVLSKRHLQEYYRGQ
>CP019306.1|AYV95512.1|1561289_1563269_+|3-dehydroquinate-synthase
MKEILIHTKTDDYPVLIGSHFLHKVHSFTKKYDKLLFLSNDTLFSYYGDWYQQNIASEKTEYFLLPDGEEYKTLDSVQKIYDFMIEKHFSRKSCILCFGGGVICDIGGFVAASFMRGIDFIQLPTSLLAQVDASIGGKVAVNHSTGKNLIGFFYNPKAVLIDVSFLDTLEETQFQSGMAEVIKHSILSCDEKYSDFLYRNYEAIQEKEEDTLISLVEQSCRIKQYYVEKDMKEQGIRAFLNFGHTYAHALESLFQYKNISHGEAVAKGCLLDLYVSYRQGFLTKEYFEKIKRIFHLYSIDSTPILFPFKALWEAMKQDKKNAFSKINSIYLKKREEEKIFTVQEIHKQFTEDYLTQQLHNEVKAVIDIGTNSCRLYIAERQADTHQIMRHLHQEVQIVQLGEGVNQTKRLQKHAMDRTINCLKNYATTIQNYACSSSYCFATSATRDAENRDFFIQKVFEEAGIQIHCISGETEAEYNFRGVSLAIPEQILIIDIGGGSTEFTLGKNTSIFFSKSINIGAVRATELFFPNQDYSSEAVMQCKKWILKQLEPLDYLRKENFKVVGVAGTATTQISVAKKMKQYRKEIVHLSTLSMEQLEKNLSLFLSKSLEERQKIIGLEAKRANVIIAGTIILQTILSYLERDSMTISEYDNLMGAMIL
>CP019306.1|AYV95513.1|1563265_1563697_+|hypothetical-protein
MKKDLAALLQNNPEFDLSIYKILNDKQLESLENNIVLFLHGKTLDMGTKDLSILLLKELLCTLSQQELLPKTIILSQKTVLCNQRESEFLHFFRLLEQKNIEILTCKTSAEYYKINNNIPIGRFAGMEEIIEKLFHASKIIQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP019306_4	4.1\|1902545\|28\|CP019306\|CRISPRCasFinder	1902545-1902572	28	MG592473	Vibrio phage 1.101.O._10N.261.45.C6, partial genome	27930-27957	5	0.821
CP019306_4	4.1\|1902545\|28\|CP019306\|CRISPRCasFinder	1902545-1902572	28	MG592459	Vibrio phage 1.084.O._10N.261.49.F5, partial genome	25914-25941	5	0.821
CP019306_4	4.1\|1902545\|28\|CP019306\|CRISPRCasFinder	1902545-1902572	28	KY971610	Pseudomonas phage PspYZU05, complete genome	42651-42678	5	0.821
CP019306_4	4.1\|1902545\|28\|CP019306\|CRISPRCasFinder	1902545-1902572	28	NZ_CP020859	Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence	260988-261015	5	0.821
CP019306_1	1.11\|649497\|34\|CP019306\|CRISPRCasFinder	649497-649530	34	MN694478	Marine virus AFVG_250M504, complete genome	7276-7309	7	0.794
CP019306_1	1.11\|649497\|34\|CP019306\|CRISPRCasFinder	649497-649530	34	MN694270	Marine virus AFVG_250M505, complete genome	7397-7430	7	0.794
CP019306_1	1.11\|649497\|34\|CP019306\|CRISPRCasFinder	649497-649530	34	MN694656	Marine virus AFVG_250M501, complete genome	7005-7038	7	0.794
CP019306_1	1.11\|649497\|34\|CP019306\|CRISPRCasFinder	649497-649530	34	MN693919	Marine virus AFVG_250M503, complete genome	28884-28917	7	0.794
CP019306_1	1.11\|649497\|34\|CP019306\|CRISPRCasFinder	649497-649530	34	MN694712	Marine virus AFVG_250M502, complete genome	28886-28919	7	0.794
CP019306_1	1.11\|649497\|34\|CP019306\|CRISPRCasFinder	649497-649530	34	MN689509	Lactococcus phage CHPC1175, complete genome	29299-29332	7	0.794
CP019306_1	1.11\|649497\|34\|CP019306\|CRISPRCasFinder	649497-649530	34	MN689516	Lactococcus phage CHPC148, complete genome	25744-25777	7	0.794
CP019306_1	1.11\|649497\|34\|CP019306\|CRISPRCasFinder	649497-649530	34	NC_004746	Lactococcus phage 4268, complete genome	7751-7784	7	0.794
CP019306_1	1.11\|649497\|34\|CP019306\|CRISPRCasFinder	649497-649530	34	MN689530	Lactococcus phage CHPC974, partial genome	27029-27062	7	0.794
CP019306_1	1.11\|649497\|34\|CP019306\|CRISPRCasFinder	649497-649530	34	AF489521	Lactococcus bacteriophage 4268, complete genome	7751-7784	7	0.794
CP019306_4	4.1\|1902545\|28\|CP019306\|CRISPRCasFinder	1902545-1902572	28	NZ_CP018030	Alteromonas mediterranea strain RG65 plasmid MRG65-300, complete sequence	239608-239635	7	0.75
CP019306_1	1.10\|649432\|33\|CP019306\|CRISPRCasFinder	649432-649464	33	NZ_CP015356	Bacillus thuringiensis strain MYBT18246 plasmid p101287, complete sequence	29717-29749	8	0.758
CP019306_1	1.10\|649432\|33\|CP019306\|CRISPRCasFinder	649432-649464	33	NC_022882	Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence	213409-213441	8	0.758
CP019306_1	1.11\|649497\|34\|CP019306\|CRISPRCasFinder	649497-649530	34	MG592428	Vibrio phage 1.046.O._10N.286.52.E3, partial genome	57149-57182	8	0.765
CP019306_1	1.11\|649497\|34\|CP019306\|CRISPRCasFinder	649497-649530	34	MK448884	Streptococcus phage Javan246, complete genome	12397-12430	8	0.765
CP019306_1	1.15\|649433\|33\|CP019306\|PILER-CR	649433-649465	33	NZ_CP015356	Bacillus thuringiensis strain MYBT18246 plasmid p101287, complete sequence	29717-29749	8	0.758
CP019306_1	1.15\|649433\|33\|CP019306\|PILER-CR	649433-649465	33	NC_022882	Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence	213409-213441	8	0.758
CP019306_1	1.1\|649170\|31\|CP019306\|CRT	649170-649200	31	NZ_CP033033	Agrobacterium tumefaciens strain 12D1 plasmid pTi12D1, complete sequence	114305-114335	10	0.677
CP019306_1	1.1\|649170\|31\|CP019306\|CRT	649170-649200	31	NZ_KY000073	Agrobacterium tumefaciens strain Tun188 plasmid pTi_Tun188, complete sequence	119717-119747	10	0.677
CP019306_1	1.1\|649170\|31\|CP019306\|CRT	649170-649200	31	NZ_KY000071	Agrobacterium tumefaciens strain Tun183 plasmid pTi_Tun183, complete sequence	42444-42474	10	0.677

1. spacer 4.1|1902545|28|CP019306|CRISPRCasFinder matches to MG592473 (Vibrio phage 1.101.O._10N.261.45.C6, partial genome) position: , mismatch: 5, identity: 0.821

ttgttctcctttaaaatatttgcgatac	CRISPR spacer
ttattctcctttaaaatatttattacac	Protospacer
**.******************.. *.**

2. spacer 4.1|1902545|28|CP019306|CRISPRCasFinder matches to MG592459 (Vibrio phage 1.084.O._10N.261.49.F5, partial genome) position: , mismatch: 5, identity: 0.821

ttgttctcctttaaaatatttgcgatac	CRISPR spacer
ttattctcctttaaaatatttattacac	Protospacer
**.******************.. *.**

3. spacer 4.1|1902545|28|CP019306|CRISPRCasFinder matches to KY971610 (Pseudomonas phage PspYZU05, complete genome) position: , mismatch: 5, identity: 0.821

ttgttctcctttaaaatatttgcgatac	CRISPR spacer
ttgttctcctttaaaaaatttattatat	Protospacer
**************** ****.. ***.

4. spacer 4.1|1902545|28|CP019306|CRISPRCasFinder matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.821

ttgttctcctttaaaatatttgcgatac	CRISPR spacer
ttgttctcctttaaaataattcatatat	Protospacer
****************** **   ***.

5. spacer 1.11|649497|34|CP019306|CRISPRCasFinder matches to MN694478 (Marine virus AFVG_250M504, complete genome) position: , mismatch: 7, identity: 0.794

cttcggtgtcctgcaatgttgaaagcttggcaag	CRISPR spacer
cgtcttcttcctgcaatactgaaagcttggcaag	Protospacer
* **  . *********..***************

6. spacer 1.11|649497|34|CP019306|CRISPRCasFinder matches to MN694270 (Marine virus AFVG_250M505, complete genome) position: , mismatch: 7, identity: 0.794

cttcggtgtcctgcaatgttgaaagcttggcaag	CRISPR spacer
cgtcttcttcctgcaatactgaaagcttggcaag	Protospacer
* **  . *********..***************

7. spacer 1.11|649497|34|CP019306|CRISPRCasFinder matches to MN694656 (Marine virus AFVG_250M501, complete genome) position: , mismatch: 7, identity: 0.794

cttcggtgtcctgcaatgttgaaagcttggcaag	CRISPR spacer
cgtcttcttcctgcaatactgaaagcttggcaag	Protospacer
* **  . *********..***************

8. spacer 1.11|649497|34|CP019306|CRISPRCasFinder matches to MN693919 (Marine virus AFVG_250M503, complete genome) position: , mismatch: 7, identity: 0.794

cttcggtgtcctgcaatgttgaaagcttggcaag	CRISPR spacer
cgtcttcttcctgcaatactgaaagcttggcaag	Protospacer
* **  . *********..***************

9. spacer 1.11|649497|34|CP019306|CRISPRCasFinder matches to MN694712 (Marine virus AFVG_250M502, complete genome) position: , mismatch: 7, identity: 0.794

cttcggtgtcctgcaatgttgaaagcttggcaag	CRISPR spacer
cgtcttcttcctgcaatactgaaagcttggcaag	Protospacer
* **  . *********..***************

10. spacer 1.11|649497|34|CP019306|CRISPRCasFinder matches to MN689509 (Lactococcus phage CHPC1175, complete genome) position: , mismatch: 7, identity: 0.794

cttcggtgtcctgcaatgttgaaagcttggcaag	CRISPR spacer
tttcttttacctgcaatggagaaagcttggcaag	Protospacer
.***  *  *********  **************

11. spacer 1.11|649497|34|CP019306|CRISPRCasFinder matches to MN689516 (Lactococcus phage CHPC148, complete genome) position: , mismatch: 7, identity: 0.794

cttcggtgtcctgcaatgttgaaagcttggcaag	CRISPR spacer
tttcttttacctgcaatggagaaagcttggcaag	Protospacer
.***  *  *********  **************

12. spacer 1.11|649497|34|CP019306|CRISPRCasFinder matches to NC_004746 (Lactococcus phage 4268, complete genome) position: , mismatch: 7, identity: 0.794

cttcggtgtcctgcaatgttgaaagcttggcaag	CRISPR spacer
tttcttttacctgcaatggagaaagcttggcaag	Protospacer
.***  *  *********  **************

13. spacer 1.11|649497|34|CP019306|CRISPRCasFinder matches to MN689530 (Lactococcus phage CHPC974, partial genome) position: , mismatch: 7, identity: 0.794

cttcggtgtcctgcaatgttgaaagcttggcaag	CRISPR spacer
tttcttttacctgcaatggagaaagcttggcaag	Protospacer
.***  *  *********  **************

14. spacer 1.11|649497|34|CP019306|CRISPRCasFinder matches to AF489521 (Lactococcus bacteriophage 4268, complete genome) position: , mismatch: 7, identity: 0.794

cttcggtgtcctgcaatgttgaaagcttggcaag	CRISPR spacer
tttcttttacctgcaatggagaaagcttggcaag	Protospacer
.***  *  *********  **************

15. spacer 4.1|1902545|28|CP019306|CRISPRCasFinder matches to NZ_CP018030 (Alteromonas mediterranea strain RG65 plasmid MRG65-300, complete sequence) position: , mismatch: 7, identity: 0.75

ttgttctcctttaaaatatttgcgatac	CRISPR spacer
ttgttctcctttcaaatatttaaaagga	Protospacer
************ ********. .* .

16. spacer 1.10|649432|33|CP019306|CRISPRCasFinder matches to NZ_CP015356 (Bacillus thuringiensis strain MYBT18246 plasmid p101287, complete sequence) position: , mismatch: 8, identity: 0.758

atgggcaaggaggaatcttatttcgaaaaaact	CRISPR spacer
cttgagaagtaggaatcttattttgaaaaaaga	Protospacer
 * *. *** *************.*******

17. spacer 1.10|649432|33|CP019306|CRISPRCasFinder matches to NC_022882 (Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence) position: , mismatch: 8, identity: 0.758

atgggcaaggaggaatcttatttcgaaaaaact	CRISPR spacer
cttgagaagtaggaatcttattttgaaaaaaga	Protospacer
 * *. *** *************.*******

18. spacer 1.11|649497|34|CP019306|CRISPRCasFinder matches to MG592428 (Vibrio phage 1.046.O._10N.286.52.E3, partial genome) position: , mismatch: 8, identity: 0.765

cttcggtgtcctgcaatgttgaaagcttggcaag	CRISPR spacer
tcttgtttacctgcaatgctgaacgcttggcaag	Protospacer
..*.* *  *********.**** **********

19. spacer 1.11|649497|34|CP019306|CRISPRCasFinder matches to MK448884 (Streptococcus phage Javan246, complete genome) position: , mismatch: 8, identity: 0.765

cttcggtgtcctgcaatgttgaaagcttggcaag	CRISPR spacer
cgtctagctcccgcaatgctgaaagcttggcacg	Protospacer
* ** .  ***.******.************* *

20. spacer 1.15|649433|33|CP019306|PILER-CR matches to NZ_CP015356 (Bacillus thuringiensis strain MYBT18246 plasmid p101287, complete sequence) position: , mismatch: 8, identity: 0.758

atgggcaaggaggaatcttatttcgaaaaaact	CRISPR spacer
cttgagaagtaggaatcttattttgaaaaaaga	Protospacer
 * *. *** *************.*******

21. spacer 1.15|649433|33|CP019306|PILER-CR matches to NC_022882 (Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence) position: , mismatch: 8, identity: 0.758

atgggcaaggaggaatcttatttcgaaaaaact	CRISPR spacer
cttgagaagtaggaatcttattttgaaaaaaga	Protospacer
 * *. *** *************.*******

22. spacer 1.1|649170|31|CP019306|CRT matches to NZ_CP033033 (Agrobacterium tumefaciens strain 12D1 plasmid pTi12D1, complete sequence) position: , mismatch: 10, identity: 0.677

aacagtagatttgacaaatccaactcaaaaa	CRISPR spacer
gttagtagatttgacaactcaaactcctccc	Protospacer
. .************** ** *****

23. spacer 1.1|649170|31|CP019306|CRT matches to NZ_KY000073 (Agrobacterium tumefaciens strain Tun188 plasmid pTi_Tun188, complete sequence) position: , mismatch: 10, identity: 0.677

aacagtagatttgacaaatccaactcaaaaa	CRISPR spacer
gttagtagatttgacaactcaaactcctccc	Protospacer
. .************** ** *****

24. spacer 1.1|649170|31|CP019306|CRT matches to NZ_KY000071 (Agrobacterium tumefaciens strain Tun183 plasmid pTi_Tun183, complete sequence) position: , mismatch: 10, identity: 0.677

aacagtagatttgacaaatccaactcaaaaa	CRISPR spacer
gttagtagatttgacaactcaaactcctccc	Protospacer
. .************** ** *****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

262035 : 337073

Fusobacterium_phage(35.71%)

holin,capsid,tail,terminase,protease,portal,tRNA,transposase,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYV94338.1\|262035_263346_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
AYV94339.1\|264030_265206_+	MFS transporter	NA	NA	NA	NA
AYV94340.1\|265373_265574_-	hypothetical protein	NA	NA	NA	NA
AYV94341.1\|265576_266017_-	hypothetical protein	NA	NA	NA	NA
AYV94342.1\|266145_267489_-	recombinase family protein	Q9JML1	Wolbachia_phage	2.6e-17	25.9
AYV94343.1\|267492_267768_-	hypothetical protein	NA	NA	NA	NA
AYV94344.1\|267764_267983_-	hypothetical protein	NA	NA	NA	NA
AYV96198.1\|267963_268254_-	hypothetical protein	NA	NA	NA	NA
AYV94345.1\|268433_268775_-	hypothetical protein	NA	NA	NA	NA
AYV94346.1\|268771_269008_-	hypothetical protein	NA	NA	NA	NA
AYV94347.1\|269036_269270_-	hypothetical protein	NA	NA	NA	NA
AYV94348.1\|269270_269816_-	hypothetical protein	NA	NA	NA	NA
AYV94349.1\|269829_270651_-	SAM-dependent methyltransferase	A0A2I6PG28	Plesiomonas_phage	2.2e-43	33.9
AYV94350.1\|270788_271097_-	hypothetical protein	NA	NA	NA	NA
AYV94351.1\|271197_271878_-	hypothetical protein	A0A0E3U242	Fusobacterium_phage	2.0e-55	53.5
AYV94352.1\|271870_272587_-	ParA family protein	A0A0E3Y677	Fusobacterium_phage	8.2e-63	56.4
AYV94353.1\|272600_272993_-	hypothetical protein	NA	NA	NA	NA
AYV94354.1\|272998_273208_-	hypothetical protein	NA	NA	NA	NA
AYV94355.1\|273189_273825_-	hypothetical protein	Q3HQZ7	Burkholderia_phage	3.1e-05	32.6
AYV94356.1\|273821_274652_-	replication protein	A0A141E184	Streptococcus_phage	5.1e-32	52.3
AYV94357.1\|274644_274932_-	hypothetical protein	NA	NA	NA	NA
AYV94358.1\|275178_275397_-	hypothetical protein	NA	NA	NA	NA
AYV94359.1\|275642_275876_+	XRE family transcriptional regulator	NA	NA	NA	NA
AYV94360.1\|276078_276354_-	hypothetical protein	NA	NA	NA	NA
AYV94361.1\|277006_277231_+	XRE family transcriptional regulator	NA	NA	NA	NA
AYV94362.1\|277340_277799_+	hypothetical protein	NA	NA	NA	NA
AYV94363.1\|277795_277981_-	hypothetical protein	NA	NA	NA	NA
AYV94364.1\|278047_278251_+	hypothetical protein	NA	NA	NA	NA
AYV94365.1\|278287_278467_-	hypothetical protein	NA	NA	NA	NA
AYV94366.1\|278475_278670_-	hypothetical protein	NA	NA	NA	NA
AYV94367.1\|278820_279300_+	XRE family transcriptional regulator	NA	NA	NA	NA
AYV94368.1\|279322_279730_+	hypothetical protein	NA	NA	NA	NA
AYV94369.1\|279746_281597_+	DEAD/DEAH box helicase	A0A2I5ARD8	Synechococcus_phage	1.8e-16	24.2
AYV94370.1\|281599_281935_+	hypothetical protein	NA	NA	NA	NA
AYV94371.1\|282035_283028_+	Abi family protein	A0A0S2MYH0	Enterococcus_phage	1.1e-30	31.7
AYV94372.1\|283273_283486_+	hypothetical protein	NA	NA	NA	NA
AYV94373.1\|283478_283679_+	hypothetical protein	NA	NA	NA	NA
AYV94374.1\|283686_284820_+	hypothetical protein	A0A0E3U246	Fusobacterium_phage	4.4e-103	53.0
AYV94375.1\|284961_286272_+	chromosome partitioning protein ParB	A0A0E3Y5D8	Fusobacterium_phage	3.9e-143	58.2
AYV94376.1\|286286_286964_+	hypothetical protein	A0A0E3Y615	Fusobacterium_phage	1.3e-46	46.8
AYV94377.1\|287095_287680_+	hypothetical protein	A0A0E3Y4U4	Fusobacterium_phage	3.3e-09	30.9
AYV94378.1\|287672_289499_+\|terminase	phage terminase large subunit family protein	A0A0E3U2N4	Fusobacterium_phage	5.2e-130	44.0
AYV94379.1\|289495_289903_+	hypothetical protein	NA	NA	NA	NA
AYV94380.1\|289912_291460_+\|portal	phage portal protein	A0A0C5AJ48	Bacteriophage	1.1e-99	42.2
AYV94381.1\|291422_292454_+\|protease	Clp protease ClpP	A0A0C5AEN1	Bacteriophage	8.0e-35	31.5
AYV94382.1\|292466_292787_+	hypothetical protein	NA	NA	NA	NA
AYV94383.1\|292805_293834_+\|capsid	phage capsid protein	NA	NA	NA	NA
AYV94384.1\|293844_294138_+	hypothetical protein	NA	NA	NA	NA
AYV94385.1\|294137_294473_+	hypothetical protein	NA	NA	NA	NA
AYV94386.1\|294476_295022_+	hypothetical protein	NA	NA	NA	NA
AYV94387.1\|295012_295546_+	hypothetical protein	NA	NA	NA	NA
AYV94388.1\|295555_295774_+	hypothetical protein	NA	NA	NA	NA
AYV94389.1\|295785_297234_+\|tail	phage tail protein	A0A059WKP9	Vibrio_phage	1.6e-73	34.3
AYV94390.1\|297245_297752_+\|tail	phage tail protein	NA	NA	NA	NA
AYV94391.1\|297761_298145_+	hypothetical protein	NA	NA	NA	NA
AYV94392.1\|298316_300935_+\|tail	phage tail tape measure protein	H9A124	Staphylococcus_phage	4.7e-39	32.0
AYV94393.1\|300915_301128_+\|tail	phage tail protein	A0A2K9V353	Faecalibacterium_phage	2.7e-06	46.4
AYV94394.1\|301109_302144_+	late control protein	A0A0E3U253	Fusobacterium_phage	4.3e-20	27.5
AYV94395.1\|302140_302653_+\|plate	phage baseplate protein	NA	NA	NA	NA
AYV96199.1\|302652_303285_+	hypothetical protein	NA	NA	NA	NA
AYV94396.1\|303286_303562_+	hypothetical protein	NA	NA	NA	NA
AYV94397.1\|303554_304655_+\|plate	baseplate assembly protein	R9U1E3	Rhizobium_phage	5.4e-13	23.9
AYV94398.1\|304651_305311_+\|tail	phage tail protein I	A0A0C5AJ63	Bacteriophage	2.7e-12	29.0
AYV94399.1\|305303_306980_+	hypothetical protein	NA	NA	NA	NA
AYV94400.1\|307651_308320_+	DUF4376 domain-containing protein	A0A0E3U258	Fusobacterium_phage	3.7e-09	42.2
AYV94401.1\|308347_308809_+	M15 family peptidase	A0A0E3Y6B0	Fusobacterium_phage	1.1e-33	50.3
AYV94402.1\|308839_309223_+	hypothetical protein	NA	NA	NA	NA
AYV94403.1\|309209_309662_+	DUF1353 domain-containing protein	A0A0K2QQU0	Ralstonia_phage	4.9e-13	45.9
AYV94404.1\|309677_310154_+\|holin	holin	Q2I8E7	Bacillus_phage	2.9e-16	39.1
AYV94405.1\|310174_310345_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
AYV94406.1\|310789_311353_-	hypothetical protein	NA	NA	NA	NA
AYV94407.1\|311349_312012_-	O-methyltransferase	NA	NA	NA	NA
AYV94408.1\|312018_312912_-	DMT family transporter	NA	NA	NA	NA
AYV94409.1\|312996_314337_-	magnesium transporter	NA	NA	NA	NA
AYV94410.1\|314472_315771_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
AYV94411.1\|316215_317274_+\|protease	omptin family outer membrane protease	NA	NA	NA	NA
AYV94412.1\|317706_319092_+	transporter	NA	NA	NA	NA
AYV94413.1\|319095_320052_+	RloB domain-containing protein	NA	NA	NA	NA
AYV94414.1\|320157_321051_+	hypothetical protein	NA	NA	NA	NA
AYV94415.1\|321054_322968_+	hypothetical protein	NA	NA	NA	NA
AYV94416.1\|323055_323736_+	CRISPR-associated protein	NA	NA	NA	NA
AYV96200.1\|324302_324968_+	hypothetical protein	NA	NA	NA	NA
AYV94417.1\|324969_325839_+	hypothetical protein	NA	NA	NA	NA
AYV94418.1\|326230_326788_+	tetratricopeptide repeat protein	NA	NA	NA	NA
AYV94419.1\|326810_327356_+	J domain-containing protein	NA	NA	NA	NA
AYV94420.1\|327394_328753_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A0N7G7P8	Chrysochromulina_ericina_virus	2.2e-32	34.6
AYV94421.1\|328742_329693_+	ribose-phosphate diphosphokinase	A0A2K9L2G2	Tupanvirus	5.6e-43	36.6
AYV94422.1\|329695_330304_+	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	3.0e-21	32.1
AYV94423.1\|330312_330747_+	hypothetical protein	NA	NA	NA	NA
AYV94424.1\|334799_335951_+	YARHG domain-containing protein	NA	NA	NA	NA
AYV94425.1\|336092_337073_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_2

413282 : 421858

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYV94494.1\|413282_413987_+	acylneuraminate cytidylyltransferase family protein	A0A1B1IVD3	uncultured_Mediterranean_phage	5.6e-16	30.5
AYV94495.1\|414041_414935_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	3.2e-101	60.8
AYV94496.1\|414913_415489_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.6e-35	41.2
AYV94497.1\|415485_416325_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	9.4e-18	29.5
AYV94498.1\|416321_417422_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.1e-66	40.6
AYV94499.1\|417439_417808_-	M15 family peptidase	A9DET4	Yersinia_phage	7.0e-26	47.1
AYV94500.1\|417818_418004_-	DNA-binding protein	NA	NA	NA	NA
AYV94501.1\|418008_418371_-	DUF1353 domain-containing protein	X2KQ25	Campylobacter_phage	6.3e-11	38.1
AYV94502.1\|418523_418769_+	DNA-binding protein	NA	NA	NA	NA
AYV94503.1\|418879_419173_+	hypothetical protein	NA	NA	NA	NA
AYV94504.1\|419193_419868_-	DUF1275 domain-containing protein	NA	NA	NA	NA
AYV94505.1\|419864_420182_-	hypothetical protein	NA	NA	NA	NA
AYV94506.1\|420331_421060_+	hypothetical protein	NA	NA	NA	NA
AYV94507.1\|421345_421858_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.3e-09	28.8

DBSCAN-SWA_3

563279 : 595100

Fusobacterium_phage(69.23%)

holin,head,transposase,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYV94625.1\|563279_564707_-\|transposase	transposase	A0A0H3UZK2	Geobacillus_virus	3.9e-125	51.9
AYV94626.1\|564717_565119_-\|transposase	IS200/IS605 family transposase	A0A0A8WIU6	Clostridium_phage	2.5e-24	48.0
AYV94627.1\|565748_566006_+	hypothetical protein	NA	NA	NA	NA
AYV96211.1\|566019_566484_-\|holin	holin	D7RWK5	Brochothrix_phage	2.3e-05	31.0
AYV94628.1\|566503_566953_-	DUF1353 domain-containing protein	A0A0E3Y4V5	Fusobacterium_phage	1.3e-21	47.0
AYV94629.1\|566962_567247_-	hypothetical protein	NA	NA	NA	NA
AYV94630.1\|567260_567725_-	M15 family peptidase	A0A2L0V0S8	Agrobacterium_phage	2.8e-16	37.5
AYV94631.1\|567735_568416_-	DUF4376 domain-containing protein	NA	NA	NA	NA
AYV94632.1\|568427_569321_-	hypothetical protein	A0A0E3Y6G8	Fusobacterium_phage	1.0e-09	39.6
AYV94633.1\|569324_569852_-	hypothetical protein	A0A0E3Y5G1	Fusobacterium_phage	3.9e-46	54.1
AYV94634.1\|569852_570995_-	hypothetical protein	A0A0E3Y634	Fusobacterium_phage	5.4e-133	61.6
AYV94635.1\|570991_571330_-	hypothetical protein	A0A0E3U2P9	Fusobacterium_phage	6.6e-31	62.2
AYV94636.1\|571338_571986_-	hypothetical protein	A0A0E3U262	Fusobacterium_phage	3.1e-61	73.4
AYV94637.1\|571982_572840_-	hypothetical protein	A0A0E3Y4V7	Fusobacterium_phage	1.4e-93	68.8
AYV94638.1\|572839_573160_-	hypothetical protein	A0A0E3Y6B2	Fusobacterium_phage	2.3e-33	63.8
AYV94639.1\|573175_573757_-	hypothetical protein	A0A0E3U263	Fusobacterium_phage	4.6e-40	49.7
AYV94640.1\|573758_575456_-	hypothetical protein	A0A0E3Y5G6	Fusobacterium_phage	2.1e-109	50.8
AYV94641.1\|575602_576052_-	hypothetical protein	A0A0E3Y638	Fusobacterium_phage	1.4e-23	38.5
AYV94642.1\|576014_576242_-	hypothetical protein	NA	NA	NA	NA
AYV94643.1\|576249_576672_-	DUF3277 family protein	A0A0E3Y4V9	Fusobacterium_phage	6.8e-25	44.4
AYV94644.1\|576687_577677_-	hypothetical protein	A0A0E3U2Q2	Fusobacterium_phage	6.8e-116	65.0
AYV94645.1\|577689_578250_-	hypothetical protein	A0A0E3U264	Fusobacterium_phage	7.4e-27	39.8
AYV94646.1\|578239_578578_-	hypothetical protein	A0A0E3Y6B6	Fusobacterium_phage	3.2e-17	38.7
AYV94647.1\|578577_579036_-	hypothetical protein	NA	NA	NA	NA
AYV94648.1\|579046_579445_-	hypothetical protein	NA	NA	NA	NA
AYV94649.1\|579441_579681_-	hypothetical protein	NA	NA	NA	NA
AYV94650.1\|579690_580800_-	hypothetical protein	A0A2H4J2M3	uncultured_Caudovirales_phage	7.8e-36	31.5
AYV94651.1\|580803_581409_-	hypothetical protein	A0A0E3U265	Fusobacterium_phage	3.4e-17	33.2
AYV94652.1\|581401_582223_-\|head	phage head morphogenesis protein	A0A0E3Y641	Fusobacterium_phage	1.2e-52	43.3
AYV94653.1\|582197_583691_-	hypothetical protein	A0A0E3Y4W1	Fusobacterium_phage	2.8e-105	41.4
AYV94654.1\|583804_585112_-\|terminase	PBSX family phage terminase large subunit	S6AVV7	Thermus_phage	1.2e-120	53.1
AYV94655.1\|585062_585473_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AYV94656.1\|585599_586067_-	hypothetical protein	NA	NA	NA	NA
AYV94657.1\|586077_586260_-	hypothetical protein	NA	NA	NA	NA
AYV94658.1\|586306_586618_-	hypothetical protein	NA	NA	NA	NA
AYV96212.1\|586668_586878_-	hypothetical protein	NA	NA	NA	NA
AYV94659.1\|587637_587874_-	DNA-binding protein	NA	NA	NA	NA
AYV94660.1\|587926_588838_-	DNA methyltransferase	NA	NA	NA	NA
AYV94661.1\|589079_589385_-	hypothetical protein	NA	NA	NA	NA
AYV94662.1\|589350_589956_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
AYV94663.1\|589958_590174_-	hypothetical protein	NA	NA	NA	NA
AYV94664.1\|590176_590461_-	hypothetical protein	NA	NA	NA	NA
AYV94665.1\|590457_590793_-	hypothetical protein	NA	NA	NA	NA
AYV94666.1\|590794_591379_-	hypothetical protein	NA	NA	NA	NA
AYV94667.1\|591375_591729_-	DUF4406 domain-containing protein	NA	NA	NA	NA
AYV94668.1\|591725_592112_-	DUF1018 domain-containing protein	NA	NA	NA	NA
AYV94669.1\|592113_592764_-	DUF3164 family protein	NA	NA	NA	NA
AYV94670.1\|592753_593005_-	hypothetical protein	NA	NA	NA	NA
AYV96213.1\|593006_593537_-	DUF1874 domain-containing protein	A0A0N9P6N7	Acidianus_rod-shaped_virus	1.3e-09	35.8
AYV94671.1\|593686_593914_-	hypothetical protein	NA	NA	NA	NA
AYV94672.1\|593923_594115_-	hypothetical protein	NA	NA	NA	NA
AYV94673.1\|594125_595100_-\|transposase	transposase	A0A2I7S9C3	Vibrio_phage	3.2e-17	27.9

DBSCAN-SWA_4

624467 : 639789

Fusobacterium_phage(18.18%)

head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYV94704.1\|624467_624902_-	antitoxin HicB	A0A1L2JY34	Aeribacillus_phage	5.7e-11	36.4
AYV94705.1\|624941_625124_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	9.1e-19	69.5
AYV94706.1\|625219_625408_-	hypothetical protein	NA	NA	NA	NA
AYV94707.1\|625447_625813_-	hypothetical protein	NA	NA	NA	NA
AYV94708.1\|625814_626348_-	Rha family transcriptional regulator	A0A0E3Y6H2	Fusobacterium_phage	7.3e-24	41.3
AYV94709.1\|626890_627352_-	hypothetical protein	NA	NA	NA	NA
AYV94710.1\|627365_628826_-	DUF4041 domain-containing protein	X5JAC1	Clostridium_phage	5.6e-58	50.9
AYV94711.1\|628940_629519_-	hypothetical protein	NA	NA	NA	NA
AYV94712.1\|629754_630336_-	phage virion morphogenesis protein	B7SDN8	Haemophilus_phage	2.0e-06	35.6
AYV94713.1\|630346_630586_-	hypothetical protein	NA	NA	NA	NA
AYV94714.1\|630595_633163_-\|head	phage head morphogenesis protein	M1PF56	Streptococcus_phage	1.6e-12	34.6
AYV96215.1\|633174_634467_-\|terminase	PBSX family phage terminase large subunit	E5DV50	Deep-sea_thermophilic_phage	2.9e-111	48.1
AYV94715.1\|634541_634892_-	hypothetical protein	NA	NA	NA	NA
AYV94716.1\|634873_635806_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AYV94717.1\|636056_636311_-	DUF3310 domain-containing protein	A1EAD4	Streptococcus_phage	1.0e-07	39.5
AYV94718.1\|636286_637090_-	hypothetical protein	NA	NA	NA	NA
AYV94719.1\|637070_637886_-	phage antirepressor Ant	A0A0A8WIE3	Clostridium_phage	8.2e-35	38.5
AYV94720.1\|637920_638325_-	hypothetical protein	A0A2I2L3K7	Orpheovirus	4.4e-21	45.9
AYV94721.1\|638338_638539_-	hypothetical protein	NA	NA	NA	NA
AYV94722.1\|638557_639037_-	hypothetical protein	NA	NA	NA	NA
AYV94723.1\|639058_639304_-	hypothetical protein	NA	NA	NA	NA
AYV94724.1\|639300_639789_-	chromosome partitioning protein ParB	A0A0E3U266	Fusobacterium_phage	3.9e-40	59.8

DBSCAN-SWA_5

1197025 : 1204740

Prochlorococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYV95216.1\|1197025_1197646_+	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	2.5e-20	35.0
AYV95217.1\|1197816_1199043_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
AYV95218.1\|1199060_1200563_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	Q58MG4	Prochlorococcus_phage	2.7e-68	45.9
AYV95219.1\|1200564_1201125_-	phosphoribosylglycinamide formyltransferase	R9S626	Prochlorococcus_phage	2.2e-23	35.7
AYV95220.1\|1201112_1202129_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.4e-68	46.2
AYV95221.1\|1202142_1203492_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.5e-44	32.3
AYV95222.1\|1203519_1204236_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HI61	Synechococcus_phage	5.2e-41	41.9
AYV95223.1\|1204263_1204740_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	8.8e-29	47.4

DBSCAN-SWA_6

1771374 : 1779592

Streptococcus_phage(50.0%)

integrase

attL 1764084:1764099|attR 1791480:1791495

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1764084:1764099	attL	NA	NA	NA	NA
AYV95671.1\|1771374_1772790_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-13	27.0
AYV95672.1\|1772793_1774500_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.2e-30	26.2
AYV95673.1\|1774501_1776244_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.5e-28	26.7
AYV95674.1\|1776357_1776558_+	conjugal transfer protein	NA	NA	NA	NA
AYV96253.1\|1777015_1777459_+	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	1.1e-12	33.6
AYV95675.1\|1777439_1777691_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AYV95676.1\|1778122_1778326_+	excisionase	A0A1S5SF07	Streptococcus_phage	1.3e-26	82.1
AYV95677.1\|1778401_1779592_+\|integrase	site-specific integrase	A0A1S5SEW7	Streptococcus_phage	5.8e-138	62.3
1791480:1791495	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1814403 : 1887155

Clostridium_phage(32.0%)

capsid,tail,terminase,protease,tRNA,portal,plate,head,integrase

attL 1834294:1834340|attR 1868619:1868665

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYV95710.1\|1814403_1815678_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.7e-93	46.0
AYV95711.1\|1815671_1816286_-	DUF2344 domain-containing protein	NA	NA	NA	NA
AYV95712.1\|1816358_1817360_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
AYV95713.1\|1817381_1817861_-	OmpH family outer membrane protein	NA	NA	NA	NA
AYV95714.1\|1817901_1820025_-	outer membrane protein assembly factor	NA	NA	NA	NA
AYV95715.1\|1820095_1824115_-	hypothetical protein	NA	NA	NA	NA
AYV95716.1\|1824130_1824835_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
AYV95717.1\|1824836_1826729_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
AYV95718.1\|1826746_1827406_-	TrkA family potassium uptake protein	NA	NA	NA	NA
AYV95719.1\|1827419_1828754_-	potassium transporter KtrB	NA	NA	NA	NA
AYV95720.1\|1828768_1829995_-	peptidase T	NA	NA	NA	NA
AYV95721.1\|1829991_1831371_-	MATE family efflux transporter	NA	NA	NA	NA
AYV95722.1\|1831385_1832966_-	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA
AYV95723.1\|1832958_1833762_-	diaminopimelate epimerase	NA	NA	NA	NA
AYV95724.1\|1833916_1834162_+	hypothetical protein	NA	NA	NA	NA
1834294:1834340	attL	NA	NA	NA	NA
AYV95725.1\|1834490_1835516_-\|integrase	site-specific integrase	A0A0E3Y5J2	Fusobacterium_phage	3.1e-47	35.8
AYV95726.1\|1835648_1835921_-	hypothetical protein	NA	NA	NA	NA
AYV96255.1\|1836153_1836669_-	hypothetical protein	A0A0F6N4L7	Staphylococcus_phage	7.5e-10	31.2
AYV95727.1\|1836691_1837123_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
AYV95728.1\|1837132_1837753_-	XRE family transcriptional regulator	B5WZL2	Staphylococcus_phage	1.1e-18	74.2
AYV95729.1\|1837932_1838133_+	XRE family transcriptional regulator	NA	NA	NA	NA
AYV95730.1\|1838168_1838357_+	hypothetical protein	NA	NA	NA	NA
AYV95731.1\|1838759_1839548_+	phage antirepressor Ant	A0A0A8WIE3	Clostridium_phage	4.7e-35	39.8
AYV95732.1\|1839603_1839840_+	hypothetical protein	NA	NA	NA	NA
AYV95733.1\|1839874_1840132_+	hypothetical protein	NA	NA	NA	NA
AYV95734.1\|1840279_1840492_+	hypothetical protein	NA	NA	NA	NA
AYV95735.1\|1840566_1840752_+	hypothetical protein	NA	NA	NA	NA
AYV95736.1\|1840753_1841845_+	hypothetical protein	A0A139ZPJ9	Marinitoga_camini_virus	2.1e-33	40.6
AYV95737.1\|1842837_1843320_+	hypothetical protein	NA	NA	NA	NA
AYV95738.1\|1843421_1844147_+	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	Q24LD4	Clostridium_phage	4.9e-23	42.2
AYV95739.1\|1844133_1844538_+	hypothetical protein	A0A0E3Y6C4	Fusobacterium_phage	2.0e-13	33.3
AYV95740.1\|1844537_1844756_+	hypothetical protein	NA	NA	NA	NA
AYV95741.1\|1844748_1845021_+	hypothetical protein	NA	NA	NA	NA
AYV95742.1\|1845274_1845499_+	hypothetical protein	NA	NA	NA	NA
AYV95743.1\|1845495_1845795_+	hypothetical protein	NA	NA	NA	NA
AYV95744.1\|1845791_1846220_+	hypothetical protein	NA	NA	NA	NA
AYV95745.1\|1846203_1846431_+	hypothetical protein	NA	NA	NA	NA
AYV95746.1\|1846992_1847727_+	hypothetical protein	NA	NA	NA	NA
AYV95747.1\|1847728_1848538_+	AAA family ATPase	A0A2K9V3L7	Faecalibacterium_phage	3.0e-21	33.3
AYV95748.1\|1848534_1848918_+	hypothetical protein	A0A2I2L3K7	Orpheovirus	1.7e-22	48.4
AYV95749.1\|1848917_1849340_+	DUF1492 domain-containing protein	A0A2K5B275	Erysipelothrix_phage	8.3e-07	31.5
AYV95750.1\|1849619_1850024_+	endonuclease	I2E8Y8	Clostridium_phage	2.7e-07	33.3
AYV95751.1\|1850198_1850690_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
AYV95752.1\|1850693_1852400_+\|terminase	terminase large subunit	A0A0A7RVS5	Clostridium_phage	1.8e-156	48.9
AYV95753.1\|1852424_1853648_+\|portal	phage portal protein	A6M949	Geobacillus_virus	2.5e-96	46.5
AYV95754.1\|1853640_1854381_+\|protease	Clp protease ClpP	J9QE31	Clostridium_phage	1.6e-37	38.5
AYV95755.1\|1854383_1855499_+\|capsid	phage major capsid protein	A0A288WGE9	Bacillus_phage	4.3e-42	33.1
AYV95756.1\|1855509_1855791_+\|head,tail	phage gp6-like head-tail connector protein	A0A0A7RUM3	Clostridium_phage	7.5e-12	44.4
AYV95757.1\|1855791_1856127_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AYV95758.1\|1856130_1856562_+	HK97 gp10 family phage protein	NA	NA	NA	NA
AYV95759.1\|1856561_1856996_+	hypothetical protein	NA	NA	NA	NA
AYV95760.1\|1857006_1858074_+\|tail	phage tail sheath protein	A0A0A8WJL8	Clostridium_phage	1.6e-54	35.1
AYV95761.1\|1858086_1858521_+\|terminase	terminase	NA	NA	NA	NA
AYV95762.1\|1858539_1858953_+\|portal	phage portal protein	NA	NA	NA	NA
AYV95763.1\|1859661_1859844_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
AYV95764.1\|1859894_1861763_+	hypothetical protein	A0A0E3Y5G6	Fusobacterium_phage	3.2e-26	32.2
AYV95765.1\|1861775_1862216_+\|portal	phage portal protein	NA	NA	NA	NA
AYV95766.1\|1862208_1863189_+\|terminase	terminase	NA	NA	NA	NA
AYV95767.1\|1863181_1863718_+	DUF2577 domain-containing protein	NA	NA	NA	NA
AYV95768.1\|1863696_1864149_+	DUF2634 domain-containing protein	NA	NA	NA	NA
AYV95769.1\|1864145_1865204_+\|plate	baseplate J/gp47 family protein	A0A0A7RUN3	Clostridium_phage	9.0e-66	42.0
AYV95770.1\|1865204_1865774_+	DUF2313 domain-containing protein	A0A2H4J1P4	uncultured_Caudovirales_phage	1.8e-12	35.8
AYV95771.1\|1865766_1866507_+	hypothetical protein	NA	NA	NA	NA
AYV95772.1\|1866522_1867053_+	DUF2977 domain-containing protein	NA	NA	NA	NA
AYV95773.1\|1867126_1867498_+	M15 family peptidase	A9DET4	Yersinia_phage	9.2e-34	54.6
AYV95774.1\|1867502_1867979_+	hypothetical protein	NA	NA	NA	NA
AYV95775.1\|1867988_1868246_+	hypothetical protein	NA	NA	NA	NA
AYV95776.1\|1868852_1869629_-	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	1.8e-15	30.1
1868619:1868665	attR	NA	NA	NA	NA
AYV95777.1\|1869628_1870663_-	iron ABC transporter permease	NA	NA	NA	NA
AYV95778.1\|1870716_1872198_-	FMN-binding protein	A0A2P0ZL82	Lactobacillus_phage	3.4e-10	36.2
AYV95779.1\|1872369_1873131_-	hypothetical protein	NA	NA	NA	NA
AYV96256.1\|1873127_1874516_-	Na+/H+ antiporter NhaC	NA	NA	NA	NA
AYV95780.1\|1874808_1875015_-	hypothetical protein	NA	NA	NA	NA
AYV95781.1\|1875044_1878626_-	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
AYV95782.1\|1878747_1879950_-	acetate kinase	NA	NA	NA	NA
AYV95783.1\|1879974_1880988_-	phosphate acetyltransferase	NA	NA	NA	NA
AYV95784.1\|1881082_1882126_-	signal recognition particle-docking protein FtsY	D6PHS7	uncultured_phage	1.2e-14	36.4
AYV95785.1\|1882109_1883534_-	pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA
AYV95786.1\|1883548_1883941_-	hypothetical protein	NA	NA	NA	NA
AYV95787.1\|1883937_1885026_-	ribosome biogenesis GTPase YqeH	NA	NA	NA	NA
AYV95788.1\|1885040_1885829_-	recombinase XerD	NA	NA	NA	NA
AYV95789.1\|1885847_1887155_-\|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	NA	NA	NA	NA

DBSCAN-SWA_8

1902693 : 1912037

uncultured_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYV95806.1\|1902693_1906911_-	filamentous hemagglutinin N-terminal domain-containing protein	A0A0R6PJK4	Moraxella_phage	7.1e-21	29.4
AYV95807.1\|1907019_1907811_-	M48 family peptidase	NA	NA	NA	NA
AYV95808.1\|1908143_1908587_+	6-carboxytetrahydropterin synthase QueD	J9PV91	Bacillus_phage	1.4e-07	30.2
AYV95809.1\|1908573_1909242_+	putative 7-carboxy-7-deazaguanine synthase QueE	S4TZT1	uncultured_phage	1.2e-44	47.5
AYV95810.1\|1909242_1909818_+	GTP cyclohydrolase I FolE	S4U0J3	uncultured_phage	3.6e-45	52.3
AYV95811.1\|1909826_1910522_+	7-cyano-7-deazaguanine synthase QueC	A0A1U9WRB5	Streptococcus_virus	2.9e-65	56.0
AYV95812.1\|1910522_1911005_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	4.8e-51	72.9
AYV95813.1\|1911068_1912037_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	2.3e-31	31.8

DBSCAN-SWA_9

2067036 : 2073325

Fusobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYV95976.1\|2067036_2067354_-	ImmA/IrrE family metallo-endopeptidase	A8ATJ8	Listeria_phage	5.9e-05	43.0
AYV95977.1\|2067459_2067918_-	XRE family transcriptional regulator	A0A0E3U270	Fusobacterium_phage	3.4e-06	31.9
AYV95978.1\|2068085_2068289_+	hypothetical protein	NA	NA	NA	NA
AYV95979.1\|2068290_2068527_+	hypothetical protein	NA	NA	NA	NA
AYV95980.1\|2068711_2069422_+	polymer-forming cytoskeletal protein	K4JTL7	Streptococcus_phage	3.1e-06	52.8
AYV95981.1\|2069605_2070382_+	hypothetical protein	F7V9C4	Lactobacillus_virus	3.9e-18	44.5
AYV95982.1\|2070564_2071296_+	hypothetical protein	NA	NA	NA	NA
AYV95983.1\|2071288_2071630_+	hypothetical protein	NA	NA	NA	NA
AYV95984.1\|2071642_2072107_+	hypothetical protein	NA	NA	NA	NA
AYV95985.1\|2072208_2072934_+	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	Q24LD4	Clostridium_phage	4.9e-23	42.2
AYV95986.1\|2072920_2073325_+	hypothetical protein	A0A0E3Y6C4	Fusobacterium_phage	2.0e-13	33.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP019306

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection