CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP033625	Klebsiella pneumoniae strain 4743 chromosome, complete genome	3 crisprs	csa3,RT,cas3,DEDDh,DinG,WYL	2	1	8
CP033628	Klebsiella pneumoniae strain 4743 plasmid unnamed3, complete sequence	0 crisprs	RT	0	0	1
CP033626	Klebsiella pneumoniae strain 4743 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	1
CP033630	Klebsiella pneumoniae strain 4743 plasmid unnamed5	0 crisprs	NA	0	0	0
CP033629	Klebsiella pneumoniae strain 4743 plasmid unnamed4, complete sequence	0 crisprs	NA	0	0	0
CP033624	Klebsiella pneumoniae strain 4743 plasmid unnamed6	0 crisprs	c2c9_V-U4,DEDDh	0	0	1
CP033627	Klebsiella pneumoniae strain 4743 plasmid unnamed2, complete sequence	0 crisprs	csa3,cas3,RT	0	0	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP033625_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033625_1

1188607-1188715

Orphan

Consensus_repeat	Method
TGTCCCACCCTGTACCACTTTTTTTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033625_1

>merge|CP033625|1|1188607-1188715|CRISPRCasFinder
TGTCCCACCCTGTACCACTTTTTTTAAACCAAATTCTGTAATGTGGGACGCTGAAACCCGCGCCAGCTCTGCGTGTACCACTTGTCCCACCCTGTACCACCTTTTTTTA

>CP033625|1|1|1188607-1188715|CRISPRCasFinder
TGTCCCACCCTGTACCACTTTTTTTAA	ACCAAATTCTGTAATGTGGGACGCTGAAACCCGCGCCAGCTCTGCGTGTACCACT
TGTCCCACCCTGTACCACCTTTTTTTA

Protein	Signature genes	Signature genes Name	Protein_function
CP033625.1\|AYW23614.1\|1186674_1187049_-\|PTS-sorbitol-transporter	unknown	unknown	gnl\|CDD\|226254
CP033625.1\|AYW23617.1\|1188058_1188415_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP033625.1\|AYW23621.1\|1195527_1196175_-\|hypothetical-protein	unknown	unknown	unknown
CP033625.1\|AYW23619.1\|1190838_1191054_-\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
CP033625.1\|AYW23627.1\|1200001_1201663_-\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|236781
CP033625.1\|AYW23612.1\|1184673_1185687_-\|gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
CP033625.1\|AYW23626.1\|1199512_1199854_-\|outer-membrane-protein-assembly-factor-BamE	unknown	unknown	gnl\|CDD\|183190
CP033625.1\|AYW23613.1\|1185697_1186678_-\|PTS-sorbitol-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|226255
CP033625.1\|AYW23611.1\|1184026_1184233_-\|hypothetical-protein	unknown	unknown	unknown
CP033625.1\|AYW23623.1\|1198096_1198579_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
CP033625.1\|AYW23625.1\|1199155_1199446_+\|RnfH-family-protein	unknown	unknown	gnl\|CDD\|234982
CP033625.1\|AYW23620.1\|1191535_1195339_-\|DNA-binding-protein	unknown	unknown	unknown
CP033625.1\|AYW23608.1\|1180625_1181984_-\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143636
CP033625.1\|AYW23609.1\|1182560_1183010_-\|phage-virion-morphogenesis-protein	unknown	unknown	gnl\|CDD\|368274
CP033625.1\|AYW23618.1\|1188733_1190803_-\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|227806
CP033625.1\|AYW23615.1\|1187045_1187567_-\|PTS-sorbitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226253
CP033625.1\|AYW23624.1\|1198689_1199166_+\|type-II-toxin-antitoxin-system-RatA-family-toxin	unknown	unknown	gnl\|CDD\|182678
CP033625.1\|AYW23622.1\|1196176_1196266_-\|integrase	unknown	unknown	unknown
CP033625.1\|AYW23610.1\|1183383_1183629_-\|holin	unknown	unknown	unknown
CP033625.1\|AYW23616.1\|1187679_1187964_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|372675

Protein	Function_ID	Function_description	E-value
CP033625.1\|AYW23614.1\|1186674_1187049_-\|PTS-sorbitol-transporter	gnl\|CDD\|226254	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism].	3.73192e-58
CP033625.1\|AYW23617.1\|1188058_1188415_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.98259e-09
CP033625.1\|AYW23619.1\|1190838_1191054_-\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	5.83127e-21
CP033625.1\|AYW23627.1\|1200001_1201663_-\|DNA-repair-protein-RecN	gnl\|CDD\|236781	PRK10869, PRK10869, recombination and repair protein; Provisional.	0
CP033625.1\|AYW23618.1\|1188733_1190803_-\|DUF927-domain-containing-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	0
CP033625.1\|AYW23626.1\|1199512_1199854_-\|outer-membrane-protein-assembly-factor-BamE	gnl\|CDD\|183190	PRK11548, PRK11548, outer membrane protein assembly factor BamE.	5.2573e-82
CP033625.1\|AYW23613.1\|1185697_1186678_-\|PTS-sorbitol-transporter-subunit-IIB	gnl\|CDD\|226255	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism].	1.71362e-173
CP033625.1\|AYW23615.1\|1187045_1187567_-\|PTS-sorbitol-transporter-subunit-IIC	gnl\|CDD\|226253	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism].	6.94718e-79
CP033625.1\|AYW23623.1\|1198096_1198579_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	5.43734e-87
CP033625.1\|AYW23608.1\|1180625_1181984_-\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	3.02794e-22
CP033625.1\|AYW23609.1\|1182560_1183010_-\|phage-virion-morphogenesis-protein	gnl\|CDD\|368274	pfam05069, Phage_tail_S, Phage virion morphogenesis family. Protein S of phage P2 is thought to be involved in tail completion and stable head joining.	6.12186e-39
CP033625.1\|AYW23612.1\|1184673_1185687_-\|gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	3.08412e-65
CP033625.1\|AYW23624.1\|1198689_1199166_+\|type-II-toxin-antitoxin-system-RatA-family-toxin	gnl\|CDD\|182678	PRK10724, PRK10724, type II toxin-antitoxin system RatA family toxin.	3.17506e-105
CP033625.1\|AYW23625.1\|1199155_1199446_+\|RnfH-family-protein	gnl\|CDD\|234982	PRK01777, PRK01777, RnfH family protein.	7.65271e-47
CP033625.1\|AYW23616.1\|1187679_1187964_-\|transcriptional-regulator	gnl\|CDD\|372675	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding.	1.06433e-37

>CP033625.1|AYW23617.1|1188058_1188415_+|XRE-family-transcriptional-regulator
MPEDGCCPERDNSCIFRCRVAIVIGKRLKISRVRADLTQAELGVLAGLDEESASARISSYEKEVHAPDFKLVCKLAAALDVPEAYFYAVDDELAELILQYHRFKKNNPGRTLLFSPNP
>CP033625.1|AYW23616.1|1187679_1187964_-|transcriptional-regulator
MKKSTTKDWHPADIIAALHKRGTSLAKLSREAGLASSTLSNTLTRAWPKGEWLIAIALDVHPSEIWPGRYLNSSNKREPRKPLHPMTTTDNSGT
>CP033625.1|AYW23615.1|1187045_1187567_-|PTS-sorbitol-transporter-subunit-IIC
MFLVSLAEGFIHLFQAAGKIFLDMMTGLIPMLICLLLAINFLMKLVGTIRMEKVAALLGRSRILTYGVLPVLGWFFMSSPGALTLGKLLPEKSKPGYEDALGTTAHPLTSLFPHVVPSELFVWLGVAAGVKALGLPVTSLALRYIAAAMLIGLIRGIITEYLFLRLSKRGNVP
>CP033625.1|AYW23614.1|1186674_1187049_-|PTS-sorbitol-transporter
MMIYCARITAIGLFVADGLTDKMLITFDSNGPKDCLDYSLSLEPSFREESLMILPGDRLMLAGHDYLVTAVGKGAQQALFELGHLTLVFNGDLNPCHTGTVHLSGPVPNLRDLHGNLVIEEGRP
>CP033625.1|AYW23613.1|1185697_1186678_-|PTS-sorbitol-transporter-subunit-IIB
MNTVLIPPGPGGYGKGLWLPVASGKKVLSLTGREIHPVAIEIGALTESEIVNGFSDIPPDNDILCVVINCAGSLRCGLYPQKGIPTINVLPTWRAGPLAHFITEENYVSDVTMEQLVLVDTAEAPDSEPEITPEPALRVITTPPPPRGAEKLVRMVEQTGTAVGHVIALLFAASREAVDVSLRNVIPFMAFVSLLIALVQETALGSLIAHAMTPLANSLWGLVLLSLICGIPFLSPVLGPGAAISQVIGVMIGTQIGAGAISPAFALPALFAINVQVGCDFVPVGLSMQEAKPETIAKGVPAFLLSRQLTGPLAVIIGWLFSLGLF
>CP033625.1|AYW23612.1|1184673_1185687_-|gfo/Idh/MocA-family-oxidoreductase
MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICDTDTERCDDLAMAYGVIGYTRLDVLLQEEAIDVVSVATPDPYHTESILTALRHGKHVLAEKPLATSVRECELIVEMAQQRDLLVGVDFHKRWDLAVMRIKAELEKPEAGRILRGHISMDDVISVPTEWLNWAGASSPVWFLGSHCFDLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDSVQSLLTMADGSSWVVENSWVLPEGFPKDNDGRIDILCEATYIRSTSQHLGLEITTPGMTLTPNSYFINYRNGIASGFGIDPINDFVRAVRNRSPYPVTAVDGLAVSRICEAVHRSLKSGKPEKI
>CP033625.1|AYW23611.1|1184026_1184233_-|hypothetical-protein
MESEHEAINIALTIENGVVTNVRQIRKDEHIASLETFLWIVKRAGYEVVPPQESTQDPENIKVLAEVE
>CP033625.1|AYW23610.1|1183383_1183629_-|holin
MLCAGCTSAPPVPTPVIVYNACPRVSLCPMPGSDPTTNGDLSADIRQLVSALEGCALQVRTVKNCQDKIDVQAKESAKSLN
>CP033625.1|AYW23609.1|1182560_1183010_-|phage-virion-morphogenesis-protein
MNDFKPFDDKLAGLIAALSPTARRKMAADIAKPLRARQQRRIKTQKAPDGTPYAARKRQPVKAKKDRVKREMFAKLRISRFMKATAGNDVAVVEFTGKVQRMVNVHQYGLKDKPSPNSGSVEYPARILLGFSPSDIDFASTKIVNYLSE
>CP033625.1|AYW23608.1|1180625_1181984_-|adenylate/guanylate-cyclase-domain-containing-protein
MSTKNIYSNLEKSLEKTISESRSIRLRDSGYISEAASSSLAGMENLDSRYDFVKSSVALESVRADSNEQHYGITELVRHNFGKHGRLMPSFGCHPDFDNMDEGELRNGYSVTMFMDIIGSTKLGVIFSPETVFKIKNDIIRCAIETVNSFDGHVHRIMGDAVMAFFRSDKCEREGRIADSAIDALNCATYLIDMFKSTVIPKLNELGVDENLGIRIGIDYGAHDQVIWGKYGYMESQEVTATSFFVDVAAKLQQKAPKNSIMIGDSLAKLLGFDTNQLAVRTKIKNNEEVSLHYITPNYKDASGKSINYRQHLLKNESYYKLLPTGMLDSDFYIRASLKRDKNDPSDDNYISCSRVVRKGMGISFKGYYHSTITYDNPKFKFRVKNTGAEAADAENNGDHYFFEPAKYSDGRYFAPHWEDTKYKGLHHMYVSFWDGEQLIEPEKCFSVFIND
>CP033625.1|AYW23618.1|1188733_1190803_-|DUF927-domain-containing-protein
MKRAPFLCKQSPDRTLEVVILAGSLAWETSRIWRKDPEREDDVPPVVLGPDELADLDNLTIIRPDTLYVRVLRTGDIREEELLKIAVKLAHAGVQMARLMSPDGELLEDWSGQLARLRQERPSDILPDHFRLDEEALWFDKLTERRDGESDVQPQRICSPLRVTAITCDSHDDSYGRLLEWHTTTGQLRRWAMPMAMLSGNGEELRRILLENGLTYISTRPALRSLLCEYISRSLPGRRVTCVEKTGWHNGVYVLPDEVIGPGGDNIILQGSHYLTGGFAQAGTLAEWQGQVAALCAGNSRLVFAVCCALAAPLLRLTGTGGGGFHLRGESTDGKTTVMKVAASVCGGTDYWHSWRATGNALEGIASRHNDALLPLDELREVDPREAGMIAYMLANGQGKGRARTDGEVRNRRHWTLLLFSTGELSLAEHTERAGERLYAGMDVRMVQIPSDTGNHGAFEQLHGFASGQQFADTLCDRVARFHGTAFRAWLAFLTHDQDASTTLARELLRRYQTALMPENAGNQVQRIVARFALLAVAGEMATLQGITGWQEGTAYGAVQICLHAWLNERGHIANQEDEGVLAQIKRFITAHQYSRFASWDGPDRPLNMVGFRRVEKDPLTGEEYTLFHILPEGWREMCRGFSPARAARLCLEAECLLPGSDGKYQSQVRLPEIGKARVYRLTSRILSI
>CP033625.1|AYW23619.1|1190838_1191054_-|AlpA-family-transcriptional-regulator
MKTRADNNDAFPESGNVRMRQVVQFLAMSESSVYRLIKDTDFPRPVHLSSRLVVFDAAEIRQWQQRRAAIR
>CP033625.1|AYW23620.1|1191535_1195339_-|DNA-binding-protein
MALLDKIKSLISANETATQNIEEESVYDTLTPKIITDSSVKHYFDALDFAFSKQDVKNIAITGPYGAGKSTVIQSYLKTHLNREFINVSLADFSLSGKSDEAPLENSEIELSILQQILYKENKDNLPDSRIDRIQNRNKKHISSLFLTVLSVVAPLLLLAITIFPKYFFSLFGATEPTINVIVNMFPERFFVSIIMGLLCLFFIVRVASKAGIFDKKIKLSKIAFLQGSADMASQESSSLLNNCLDEIVYFFSRSQYKIVVFEDLDRLGNAEVFVKLREINQIVNNNLQSEPVRFIYACRDDIFLGADIRTKFFDFILPVIPVMDARNAYTHLKNKLYDFPENEQPLLKQMSLYISDMRSLQNIVNEFNLFKKVVDDNTNQAKIFALIFYKNIYAQDYNLTDKKSGVLYSFIHNYRLRKLHENHFKLLDQRLEELNNKLVKIRKESVSTDAELRKQIISRFISPELWPIVYFIKDTGNYHQRYIKFSAESFYNSEHEFINYFEQNSSLYIGYPFNGNQHQLAKIDSTSIIEEYKQRNILISSNRDDAYKKTTKEIEELKENIRTRNAISLANLLKIIGWENFRTIAEEYIATCDDRTIIDPEQLETIRNGFRFGGFEALYYLLTNGYIMQDFMMFRSIFNQGTISANDNDYIKAVGRYIGCEEANQTFLLDNSKDVLAELVGQHYQYREGALHHQIIAFLLDSQDNQDHKTLSAMIAMIFRQPASVIIAIFKILEDRFINVDYFTRLVVSSLSENKYLDKMISVLKEQEHNAISKSIASKMIALVSPDISTDQKNYQKFIEDLGFSLVSEVEPNNLQYFLHNIEQLQVIYHDIYLPVTPNEMKALNFIGDHQMYPLDRATYRVVVAGLLQSDNVTCEMVDDLPWSLLDKHQLSKIKVYVNDNINIFVKDIFIDSKESSNAIVSVITHSDLSDELKILILEKMQFTVTGLNEFPEYIDVDGNELSYHDLFYRYDHVTPGWEALLAYICEECNLEILTQYIENYADVLSQEAINLMEGDRYDLLYMKVICNDNLSDSAYAAILEPVYINTHHWDERMSLKNLYRLIKNRKIELDPETFKQAIQYFISNNDLKRIEPFVLWFSQFKDNFFPNIEYYLCVNQDDVFFKESLIGINNSHVFTLQEKSSILFKCREHYELSLFEELTISNEGLIALVNTSTDDNFTIYVIIKLLKNGYRSRTEIAHFVSRLEEKEYTKIFYQKSATLNLDKPQEAELFLSALQQANLIKKWTLRDVGKYYVQCRYEEDESYLD
>CP033625.1|AYW23621.1|1195527_1196175_-|hypothetical-protein
MTSPIRQNLFERECDMPLLEARHLALLLLGLDASQPANALPEEHQENYRILHDAISRTIKATGMVSAPANKRMFYADEMFALAWRLIDDELTPPEIKARSLKAVMKLSRNSRGRKWLKTLGDDALPDLTTSAQPSQRGMHKRDKARENTARLCWLLVQLLVEETDGRYGTSDKPASDRILRKLRALAQERELPSDGLGRGTFYEVLKMGRERKYR
>CP033625.1|AYW23622.1|1196176_1196266_-|integrase
MQWWGNYVDAARRQALLGEEEPLRIVEGE
>CP033625.1|AYW23623.1|1198096_1198579_-|SsrA-binding-protein-SmpB
MTKKKAHKPGSATIALNKRARHEYFIEDEYEAGLALQGWEVKSLRAGKANIGDSYVILKDGEAFLFGANFTPMAVASTHYVCDPTRTRKLLLNQRELDTLYGRINREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRTDLKDREWALDKARIMKHAGR
>CP033625.1|AYW23624.1|1198689_1199166_+|type-II-toxin-antitoxin-system-RatA-family-toxin
MILFALCLNVEPAMPQISRTALVPFSAEQMYQLVNDVKSYPDFLPGCTGSRVLEFGPTQMTAAVDVSKAGISKTFTTRNTLTSNQSILMSLVDGPFKKLIGGWKFIPLSPEACKIEFHLDFEFTNKLIEMAFGRVFKELAANMVQAFTSRAKEVYSAS
>CP033625.1|AYW23625.1|1199155_1199446_+|RnfH-family-protein
MPANIRVEVAYALPEKQYLQRVTLDEGATVEQAIIASGLLALRDDIDLAKNKLGIYSRPVKLHDEVHDGDRVEIYRPLIADPKELRRQRAEKSAAK
>CP033625.1|AYW23626.1|1199512_1199854_-|outer-membrane-protein-assembly-factor-BamE
MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLAPNDVAKIRVGMTQQQVAYALGTPMMTDPFGTNTWFYVFRQEPGHQKVTQQTLTLTFNSGGVLTNIDNKPALTSQ
>CP033625.1|AYW23627.1|1200001_1201663_-|DNA-repair-protein-RecN
MLAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGRAEADMVRRGATRADLCARFALKDTPAAQRWLEENQLESGRECLLRRVISADGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKTLLDGYTGEYALTQRMAEHYRQWHQSCRELAQHQQQSQERAARADLLQYQLKELNEFNPLPGEFEQIDEEYKRLANSGQLLSTCQHALTVLADGEEANLQSQLYTAKQLVSELVGMDSKLSGVLDMLEEAAIQLSEASDELRHYHDRLDLDPNRLFELEQRISRQIALARKHQVMPEELPAVYQAMLEEQRLLDDSAGSLESLSQQVVEHHQLALETARQLHALRQASADELTQLITESMHSLSMPHGVFAIEVAFDERHLTADGADHIEFRVTTNPGQPLQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHHHFFVCKETDGEMTETHMQPLDKRARLQELARLLGGSEVTRNTLANAKELLAA

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Crispr_ID: CP033625_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033625_2

1769263-1769525

Orphan

Consensus_repeat	Method
AGCGCCATCAGGCAGTGTGGCGGCTACGCCTGACCCGGCCTGGATTATACGGTGGGTGTGA	PILER-CR

2 spacers

The CRISPR arrays of CP033625_2

>merge|CP033625|2|1769263-1769525|PILER-CR
AGCGCCATCAGGCAGTGTGGCGGCTACGCCTGACCCGGCCTGGATTATACGGTGGGTGTGATACCCCGATTAGTTCGCCATCCCGTAGGCCTGATAAGCGAAGCGCCATCAGGCAGTGTGGCGGCTGCGTCTGACCCGGCCTGGATTATACGGTGGGTGTGATACCCCGATTAGTTCGCCATCCCGTAGGCCTGATAAGCGAAGCGCCATCAGGCAGTGTGGCGGCTACGCCTGACCCGGCCTGGATTATACGGTGGGTGTCA

>CP033625|2|1|1769263-1769525|PILER-CR
AGCGCCATCAGGCAGTGTGGCGGCTACGCCTGACCCGGCCTGGATTATACGGTGGGTGTGA	TACCCCGATTAGTTCGCCATCCCGTAGGCCTGATAAGCGA
AGCGCCATCAGGCAGTGTGGCGGCTGCGTCTGACCCGGCCTGGATTATACGGTGGGTGTGA	TACCCCGATTAGTTCGCCATCCCGTAGGCCTGATAAGCGA
AGCGCCATCAGGCAGTGTGGCGGCTACGCCTGACCCGGCCTGGATTATACGGTGGGTGTCA

Protein	Signature genes	Signature genes Name	Protein_function
CP033625.1\|AYW24127.1\|1780469_1781801_+\|hypothetical-protein	unknown	unknown	unknown
CP033625.1\|AYW24121.1\|1767259_1769107_+\|outer-membrane-assembly-protein-AsmA	unknown	unknown	gnl\|CDD\|236772
CP033625.1\|AYW24117.1\|1763462_1764815_-\|molecular-chaperone	unknown	unknown	gnl\|CDD\|236954
CP033625.1\|AYW24122.1\|1769746_1771330_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
CP033625.1\|AYW24113.1\|1756408_1757647_-\|MdtA/MuxA-family-multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|183194
CP033625.1\|AYW24118.1\|1764952_1765801_+\|DNA-3-methyladenine-glycosylase-2	unknown	unknown	gnl\|CDD\|236671
CP033625.1\|AYW24116.1\|1760600_1761302_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|223816
CP033625.1\|AYW24125.1\|1776545_1777679_+\|polysaccharide-export-protein	unknown	unknown	gnl\|CDD\|237903
CP033625.1\|AYW24114.1\|1757947_1759222_+\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|224220
CP033625.1\|AYW24126.1\|1778136_1780305_+\|polysaccharide-biosynthesis-tyrosine-autokinase	unknown	unknown	gnl\|CDD\|183173
CP033625.1\|AYW24129.1\|1782927_1783767_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133017
CP033625.1\|AYW24128.1\|1781836_1782904_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211420
CP033625.1\|AYW24119.1\|1765915_1766557_+\|uridine-kinase	unknown	unknown	gnl\|CDD\|235492
CP033625.1\|AYW24124.1\|1774967_1776401_+\|capsule-assembly-Wzi-family-protein	unknown	unknown	gnl\|CDD\|379441
CP033625.1\|AYW24115.1\|1759495_1760107_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|197715
CP033625.1\|AYW24123.1\|1773378_1774008_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|214471
CP033625.1\|AYW27432.1\|1761316_1763173_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP033625.1\|AYW24120.1\|1766647_1767229_+\|dCTP-deaminase	unknown	unknown	gnl\|CDD\|274062
CP033625.1\|AYW27434.1\|1777684_1778122_+\|protein-tyrosine-phosphatase	unknown	unknown	gnl\|CDD\|182256
CP033625.1\|AYW27433.1\|1772095_1772986_+\|GalU-regulator-GalF	unknown	unknown	gnl\|CDD\|182252

Protein	Function_ID	Function_description	E-value
CP033625.1\|AYW24121.1\|1767259_1769107_+\|outer-membrane-assembly-protein-AsmA	gnl\|CDD\|236772	PRK10833, PRK10833, putative assembly protein; Provisional.	0
CP033625.1\|AYW24117.1\|1763462_1764815_-\|molecular-chaperone	gnl\|CDD\|236954	PRK11678, PRK11678, putative chaperone; Provisional.	0
CP033625.1\|AYW24122.1\|1769746_1771330_-\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	9.01248e-99
CP033625.1\|AYW24113.1\|1756408_1757647_-\|MdtA/MuxA-family-multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|183194	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit.	0
CP033625.1\|AYW24118.1\|1764952_1765801_+\|DNA-3-methyladenine-glycosylase-2	gnl\|CDD\|236671	PRK10308, PRK10308, 3-methyl-adenine DNA glycosylase II; Provisional.	1.93566e-179
CP033625.1\|AYW24116.1\|1760600_1761302_-\|DNA-binding-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.98041e-36
CP033625.1\|AYW24125.1\|1776545_1777679_+\|polysaccharide-export-protein	gnl\|CDD\|237903	PRK15078, PRK15078, polysaccharide export protein Wza; Provisional.	0
CP033625.1\|AYW24114.1\|1757947_1759222_+\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|224220	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion].	5.58793e-108
CP033625.1\|AYW24126.1\|1778136_1780305_+\|polysaccharide-biosynthesis-tyrosine-autokinase	gnl\|CDD\|183173	PRK11519, PRK11519, tyrosine-protein kinase Wzc.	0
CP033625.1\|AYW24129.1\|1782927_1783767_+\|glycosyltransferase	gnl\|CDD\|133017	cd02526, GT2_RfbF_like, RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.	7.95874e-09
CP033625.1\|AYW24128.1\|1781836_1782904_+\|hypothetical-protein	gnl\|CDD\|211420	cd11579, Glyco_tran_WbsX, Glycosyl hydrolase family 99-like domain of WbsX-like glycosyltransferases. Members of this domain family are found in proteins within O-antigen biosynthesis clusters in Gram negative bacteria, where they may function as glycosyl hydrolases and typically co-occur with glycosyltransferase domains. They bear resemblance to GH71 and the GH99 family of alpha-1,2-mannosidases and may share a similar cataltyic site and mechanism. The O-antigens are essential lipopolysaccharides in gram-negative bacteria's outer membrane and have been linked to pathogenicity.	4.85027e-35
CP033625.1\|AYW24119.1\|1765915_1766557_+\|uridine-kinase	gnl\|CDD\|235492	PRK05480, PRK05480, uridine/cytidine kinase; Provisional.	1.7406e-147
CP033625.1\|AYW24124.1\|1774967_1776401_+\|capsule-assembly-Wzi-family-protein	gnl\|CDD\|379441	pfam14052, Caps_assemb_Wzi, Capsule assembly protein Wzi. Many bacteria are covered in a layer of surface-associated polysaccharide called the capsule. These capsules can be divided into four groups depending upon the organisation of genes responsible for capsule assembly, the assembly pathway and regulation. This family plays a role in group 1 capsule biosynthesis. It is likely to be involved in the later stages of capsule assembly. It is likely to consist of a beta-barrel structure.	1.13171e-133
CP033625.1\|AYW24115.1\|1759495_1760107_-\|DNA-binding-response-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	0.00203687
CP033625.1\|AYW24123.1\|1773378_1774008_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|214471	smart00014, acidPPc, Acid phosphatase homologues.	2.87661e-15
CP033625.1\|AYW27432.1\|1761316_1763173_-\|histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.38058e-41
CP033625.1\|AYW24120.1\|1766647_1767229_+\|dCTP-deaminase	gnl\|CDD\|274062	TIGR02274, Probable_deoxycytidine_triphosphate_deaminase, deoxycytidine triphosphate deaminase. Members of this family include the Escherichia coli monofunctional deoxycytidine triphosphate deaminase (dCTP deaminase) and a Methanocaldococcus jannaschii bifunctional dCTP deaminase (3.5.4.13)/dUTP diphosphatase (EC 3.6.1.23), which has the EC number 3.5.4.30 for the overall operation. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	1.60713e-93
CP033625.1\|AYW27434.1\|1777684_1778122_+\|protein-tyrosine-phosphatase	gnl\|CDD\|182256	PRK10126, PRK10126, low molecular weight protein-tyrosine-phosphatase Wzb.	1.31442e-66
CP033625.1\|AYW27433.1\|1772095_1772986_+\|GalU-regulator-GalF	gnl\|CDD\|182252	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF.	0

>CP033625.1|AYW24121.1|1767259_1769107_+|outer-membrane-assembly-protein-AsmA
MRRILTTLMILLAVIVAGLTSLVLLVNPNDFRAYMVHEVAERSGYQLDLDGPLRWHVWPQLSILSGRMTLTARGAEEPVIRADNMRLDVALLPLLSHQLQVKQVMLKGAVIQLTPKTEAVRDSSAPVVPHDNTLPLAPEDRGWSYDVRQLQVADSVLFFQHENGEQVTVRDIRLQMEQDENHRATVDFSGRVNRDQRDLALNFSATVQGGDYPHSLKADFTQLSWQLRGAELPPDGINGQGSLQASWQEDDKTLRFDNLNLMANRSTVTGSGSVVLGDRPDWSLDLHATTLDLDSLLAQRSPATDSSASQQGQSQTRPLRPVIADSDEREDYQSLRGFNGRMALSADQLQWRGLNFTQVQSEISNQQGLLTVSKMQGNLDGGQLSLPGTLDARGDTPLATFQPALQNVEIGSLIKAFNYSLNLTGKLSLSGEFSGTRIDADDFRRHWQGQAQLQMADTRTEGLNFQQLVQQAVERSTNVRAQDNYDNATRLDSVSSRLTLDNGLVTLNRLQGQSDVMAMTGEGQLDLQKENCDMRFNVRVLGGWKGEGKLIDRLKQTAIPLRIYGEWQSLSYSLQVDQILRKQLQDEAKQRLNDWVERNKGSKDGNDAKKLLDKL
>CP033625.1|AYW24120.1|1766647_1767229_+|dCTP-deaminase
MRLCDRDIEAWLDEGRLAINPRPPVERINGATVDVRLGNKFRTFRGHTAPFIDLSGPKAEVSAALDRVMSEEIVLPEGEAFFLHPGELALAVTYESVTLPADLVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMPIGALSFEPLSGPAARPYNRREDAKYRDQQGAVASRIDKD
>CP033625.1|AYW24119.1|1765915_1766557_+|uridine-kinase
MTDMSHQCVIVGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEERVKTNYDHPSSMDHSLLFQHLQMLKSGQPIELPVYSYVEHTRTPNTIHVEPKKVIILEGILLLTDARLRNELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQYADIIVPRGGKNRIAIDILKAKISQFFE
>CP033625.1|AYW24118.1|1764952_1765801_+|DNA-3-methyladenine-glycosylase-2
MVLLPWTPPYDWAWMVGFLQARAVAGVERFHDGGYSRSFGVEGHRGLIHLAPDEEAQGLRVTLSPGLQPVAEICYARIGQLFDLACDPRQVARTLGDLPQARPGLRLPGALDAFEQAVRAVLGQLVSVAMAARLTAKVAAGWGEPLAEAPGYVLFPTPEALSRADPQALKALGMPLRRAEALIHLARAALNGELPLTAPADIDAGLRQLQTLPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAAIARYARRWQPMRSYALLHIWYTDDWAPAAE
>CP033625.1|AYW24117.1|1763462_1764815_-|molecular-chaperone
MFIGFDYGTANCSVAVMRENTPQLLTLENGSALLPSMLCAPTREAVSEWLYRHHDVPTHSDENQALLRRAIAANRDEDIEVLRNSVQFGLASLQQYVEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKLQAESQLPEQIDQAVIGRPINFQGLGGDEANAQAQGILERAAHRAGFRDVVFQFEPVAAGLDFEATLSEEKRVLVVDIGGGTTDCSLLLMGPQWRERADRQQSLLGHSGCRIGGNDLDIALAFKCLMPLLGMGGETEKGTALPILPWWNAVAINDVPAQSDFYSTANGRLLNDLLRSARDADKVALLLKVWRQRLSYRLVRSAEESKIALSSAASVETALPFIQDDLATAIAQQGLEAALDQPLTRIMEQVRLALDSSQTTPDVIYLTGGSARSPLIKKALAAQLPGIPLAGGDDFGSVTAGLARWAQVVFR
>CP033625.1|AYW27432.1|1761316_1763173_-|histidine-kinase
MLLVAPQAQAATRQVGIDIPVQWYADASGQMTLDRFAALPTDQLATTRQIPSFGYSRKTWWLRSELPGTWFAGEPRWLQLGPSFVDHLTIYYRPLGSDAPWAQRTFGDRDGARESDLHYRESVLILPPPPTAAGYEVVFRLQSTSTLILLASLSSPQEFVQRATADTAFWSFYFGLAAVASGVALWLALALRRRLLWGICLFSLNYPLVAALHGFPEWFFGHAALPFQDFMISSLSLFSYATALWLHSEIFDLKKNMPRLHQLLIAAVILNLVLQVSIPLGFYGFAMQIEGVVFIIITPVLLFTSWWLWRKKAIDRTTLLLGLLPPFYVVAAVLVQLSIHGIIPFHMAIYSLWQYALIVHIITVLIIAILRVRAENRQLEQKQRLARELQIEREASFHQRQFMGMVAHEFRTPLAVIQAALENLRLSAASTSQEARFDRIGRAATRLVQLTDNCLADARLASHDLHVERQQTALLTVINMAASVVAISHDHYLNIRQHGAVESPQLQADAGLLCIAIANLLDNAVKYSPPGEIAIDIHSDAGQTELRIRDHGPGLPAGQAELIFERYRRGEHTSPVPGGTGLGLYVARQIVQAHDGKLWLAEHGPDGCTFILTLPTVA
>CP033625.1|AYW24116.1|1760600_1761302_-|DNA-binding-response-regulator
MALRLAIIEDNADLLDELLAWLGYRGFEVWGTRSAEAFWRQLHSHPVDIVLVDIGLPGEDGFSVLNYLHELGHYGLVVVSARGQQQDKLQALSLGADAYLIKPVNFAHLAETLTALGARLRQDRPAAPPAEAIGTPPAVSPGSWRLQEDKLISPDARTLELTQQEYRLVELLMRNRNEVCSKLDLHACLFSHESEPDLHRIDVVVSRLRHKARQQGIHLPVRAIFGKGLAFIS
>CP033625.1|AYW24115.1|1759495_1760107_-|DNA-binding-response-regulator
MRNINVTINTRNAFVRESLVAMVNDLTRGDLRARFSWRNTDLSAEDIIICEVIPGEIYLCNTLIKNRKRGSSLIILHSYDQLPEDEFMINCLKGVIFVSLKTASIPQLLTIIKSELQHCMTPTATDAAGRELSCASCPHRVLSRSQTAVVHGILEGLDMSKIAALQRVSPRTAAYHKNKIMEKYSLNNNHEFFQFMNLLRERW
>CP033625.1|AYW24114.1|1757947_1759222_+|dicarboxylate/amino-acid:cation-symporter
MANANKLTLFIVIFMLMGILSGAAIHAYATPTTISAWADNITLLTDLFLRLIKMVIAPLVFSTLTVGIMRLGETATIGRVGGKAMVWFITSSVLSILVGLVIVTFQHPGAGLNLAVPKEAVDTGLAVSGMSLKGFLSHTIPTSITEAMANNEILQIVVFSMFFGIAGASLGEKFNAPLVAALNVVSHIMLKVTGYVMYVAPLAIFAAISSVIASQGLGILLNYASFIGGYYLAVLLTSSVLIAVGYMVLKKEVFRLLNMLKDPVLVAFTTSSSEAAYPKTLERLVKFGCSRNIVSFVLPIGYSFNLVGSMVYCSFAAMFIAQAYNVPLSFSEITVMMLTLMLASKGIAGVPRSALVVLAATIPSFNIPVAGILLLMGIDHFLDMGRSAINVLGNGIATAMLSKNEGLLTDEEAQPDWEVEKAEA
>CP033625.1|AYW24113.1|1756408_1757647_-|MdtA/MuxA-family-multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit
MKGSNIRRWGAALAVVIIAGAAYWFWHDRGTSGSSAPAAGQGPQGPGGARHGRFGGALAPVQAATATEQAVPRYLTGLGTVTAANTVTVRSRVDGQLLSLHFQEGQQVKAGDLLAQIDPSQFKVALAQAQGQLAKDNATLANARRDLARYQQLVKTNLVSRQELDTQQSLVVESAGTVKADEAAVASAQLQLDWTRITAPIDGRVGLKQVDIGNQISSGDTTGIVVLTQTHPIDVVFTLPESSIATVVQAQKAGKALSVEAWDRTNKQKISVGELLSLDNQIDATTGTIKLKARFSNLDDALFPNQFVNARLLVDTQQNAVVIPAAALQMGNEGHFVWVLNDENKVSKHSVTPGIQDSQKVVISAGLSAGDRVVTDGIDRLTEGAKVEVVTASSGEQAQPAPRQSGKHGARS
>CP033625.1|AYW24122.1|1769746_1771330_-|TerC-family-protein
MEWIADPSIWAGLVTLVVIELVLGIDNLVFIAILAEKLPPAQRDRARITGLMLAMVMRLLLLASISWLVTLTKPLIVFHDFSFSARDLIMLFGGLFLLFKATVELNERLEGKDSDNPTQRKGAKFWAVVAQIVVLDAIFSLDSVITAVGMVDHLAVMMAAVVIAISLMLMASKALTRFVNSHPTIVILCLSFLLMIGFSLIAEGFSFIIPKGYLYAAIGFSVMIEALNQLAQFNRRRFLSANMTLRQRTTEAVMNLLSGQKEKAELDADTASLVADQDQHPLFNPQERLMIERVLNLNQRSVSSIMTSRHDIERINLSAPEEEIRSLVEKNQHTRLVVTGGKDNEDLLGVVHVIDLLQQSLRQEPLDLQALVRQPLVFPEGLPLLSALEQFRQARTHFAFVVDEFGSVEGIVTLSDVMETIAGNLPNEVEEIDARHDIQHHQDGSWTVNGHMPLEDLVQYVPLPLDDKREYHTVAGLLMEYLQHVPQVGETIEIDGYTLRTLQVDSHRVQKVQIVPPVKQDELDYEV
>CP033625.1|AYW27433.1|1772095_1772986_+|GalU-regulator-GalF
MANLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHSSKNAVENHFDTSYELEALLEQRVKRQLLAEVQAICPPGVTIMNVRQAQPLGLGHSILCARPVVGDNPFVVVLPDIILDGGTADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTKEPMVAEGQVARIVEFIEKPDEPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGESYDCGKKMGYMQAFVTYGMRNLKEGAKFRESIKKLLA
>CP033625.1|AYW24123.1|1773378_1774008_+|phosphatase-PAP2-family-protein
MNWQLISFFGDSTVLLPSAAALFIVLMLRKTSRLLAWQWGLLFGITGAIVCASKLAFMGWGLGIRELDYTGFSGNSALSAAFWPIFLWLLSARFSVGLRKAAVITGYVLAAVVGYSRLVIHAHSVSEVIAGLLLGAAGSALFLVLQKRTSDPESVNISWGGVACLVMVPLILLHSGSKAPTQSLLGQIATAVGPLDKPFTRTDLHKQVW
>CP033625.1|AYW24124.1|1774967_1776401_+|capsule-assembly-Wzi-family-protein
MIKIARIAATLGLLSSLGAQAYAAGLVVNDNDLRNDLAWLSDRGVIHLSLSTWPLSQEEISRALKKAKPSYSSEQVVLARINQRLSALKADFRVTGYTSTDQPGTPQGFGQTQPADNSLGLAFNNSGEWWDVHLQGNVEGDERISNGSRFNANGAYGAVKFWNQWLSFGQMPEWWGPGYEGSLIRGDAMRPMTGFLMQRAEQAAPETWWLRWVGPWQYQISASQMNQYTAVPHAKIIGGRFTFSPFQSLELGASRIMQWGGEGRPQSFSSFWDGFTGKDNTGTDNEPGNQLAGFDFKFKLEPTLGWPVSFYGQMIGEDESGYLPSANMFLGGVEGHHGWGKDAVNWYVEAHDTRSNMSRTDYIYTHHIYKDGYYQQGYPLGDAMGGDGQLIAGKVELITEDNQRWSTRIVYAKVNPENQSINKAFPHADTLKGVQLGWSGDVYQSVRLNTSLWYTNADNSDRDDVGASAGIEIPFSL
>CP033625.1|AYW24125.1|1776545_1777679_+|polysaccharide-export-protein
MKKKIVRFSALALAIGFLSGCTIIPGQGLNSLRKNVVELPDSDYDLDKLVNVYPMTPGLIDQLRPETVLARPNPQLDNLLRSYEYRIGVGDVLMVTVWDHPELTTPAGQYRSASDTGNWVNSDGTIFYPYIGKLQVAGKTISQVRQDIASRLTTYIESPQVDVSIAAFRSQKTYVTGEVVKSGQQPITNIPLTVMDAINNAGGLAPDADWRNVVLTHNGKDTKISLYALMQKGDLSQNHLLYPGDILFVPRNDDLKVFVMGEVVKQATMKMDRSGMTLAEALGNAEGISQEMSDATGVFVIRQLKDDKQGKIANIYQLNAQDASAMVLGTEFQLQPYDIVYVTTAPLVRWNRVISQLVPTITGVHDMTETGKFIRTW
>CP033625.1|AYW27434.1|1777684_1778122_+|protein-tyrosine-phosphatase
MLNSILVVCTGNICRSPIAERFLRQGLPNMKIDSAGTGALIGHEADESAVKIAAFHGLSLDGHKGQQFTSSLGRHYDLILVMEKKHLEQISQISPEARGKTMLFGHWLGSRDIPDPYHKSEEAFSSVYQLIEQSGLRWIEKIGAK
>CP033625.1|AYW24126.1|1778136_1780305_+|polysaccharide-biosynthesis-tyrosine-autokinase
MSSVNNKLITNDADEIDLGRLLGELVDHRKLIIAVTSLFTLCALIYALFATPIYQADALIQVEQKQANAILSNLSQMLPDSQPQSEPEIALLKSRMILGKTVDDLNLQAVIKPKYFPIFGRGWQRLSGKKDGELVVSRLYLPTSEDIDVPKVELTVKDNEHFVVKGDDFTFNGKVGELLDDKGISIKVDKIDAEPGSKFTISYITRLEAITKLQEVLSVADQGKDTGILVLSITGDNPELITNIIDSISNNYLSQNIARQAAQDAKSLEFLSNQLPKVRNDLDVAEDKLNEYRRKNDSVDLSLEAKSVLEQIVNVDNQLNDLTFRESEISQLYTKEHPNYKALMEKRKTLQEEKAKLNKRVSVMPETQQEILRLSRDVESGRAVYMQLLNRQQELNIAKSSAIGNVRIIDNAVAQTKPVKPKKIVIILIGFIFGSVVAIGIVLLRVFLRRGIESPEQLEELGINVYASIPVSEAFANNAVKKASWKNKNYDIKQAFLAVENPADLAIEAIRGLRTSLHFAMMESRNNILMISGASPNAGKTFVSTNLAAVIAQSGKKVLFIDTDMRKGYTHNLFNVENTKGLSDILSGKMTVERAIQPLSMAGFDFIARGAVPPNPAELLMHKNFDALLSWASQNYEIVVLDTPPILAVTDAAIIGNYVGTTLLVARFEQNTAKEIEVSVRRFEQSGVIVKGCILNGIIKKASSYYSYGYNHYGYTCTDNKK
>CP033625.1|AYW24127.1|1780469_1781801_+|hypothetical-protein
MLIFTLLLFSLIINILTPVVLLSKYKKITLYFLFFYYFGINYLNYIMGTNQSIENFIIKAYPDVLMLSLVLRLFIMTTRGDNTNNKKKGVDKLFFVCIFVSMIYVIYSMAKDNSISRIILDWRDTVAPVLIMYLMVRTNVINFDDGDRILHFIALMVVGNSIIAIIDYYNFNGIAESSWRYDFLIDLNLKTDSDYESRMVVYQIVRNGNLRSSGLFVSALQYSYIAGMFCFYFYLKLLNSLKWLNFSGLALSLISMIICLAGVYVSQVRTAFLIIIFNILFYHLCLSYKNNFSFKPKLTMSLAVICSVVMFYAIYYLGESADASSYGRLAQYAIMISDFNPLGAGLGAYKGLFDSFYVYIILTLGAPSIYFIYFFVKRYIYIFSRKNIEIDKKYIPFVGVCFTAFPVMMLAMSFQHVAGSIYYTLNFLTFFISMRYLTNVSVK
>CP033625.1|AYW24128.1|1781836_1782904_+|hypothetical-protein
MIRLFLSQPRVFFIFIFFLISQAKAGSLDVGVYYYPGWNKPGVEVWEPIKKYPEREPILGWYQDGDDNIIQKQLAWMEKYGVTYIAYDWYWDENTGVKNRTFAIDAYLRNSQATNVKFALLWANHTNTPKNSKEFDNIVNYWIDNYFKSSKYFTINRRPVVFVFSPQRLEMDGHKFNMDVPSLLKRARLLGNKKGLKDIYFVASTGYDENNNLIYKYPPNSYDAVSAYNYHIGISNGIPKKNSYSYQELIAGYKYTWNKILSDSDLPYIIPVSSGWDRRPWGGSIPPEHDMSYGNPKEFGNMLSEAKEEIKLHQDKALNNIIICCWNEYGEGSYIEPSKKYGFKFLDEIQKNKNF
>CP033625.1|AYW24129.1|1782927_1783767_+|glycosyltransferase
MNKVLFICVVYATQPEKTITLNSLANIKFEKNNIIASFAIWDNSQEGYESEAVKTMLKNHQVDVYHYGVNERLSKVYNQLIAKYKSSNDWVVILDDDSVIDDEYIQGVLNFIEACSKNKALIVAFPKIYNNNIMISPGYIKGVRGYLIQDIQHGMVSKKNIVAMMSGTVISLESNVELPRFDERLSFYGVDTKFFLDIDDVNGGKYILPSLLEHNSALRNPAIKNTEYCARLINLFSARKVIFENVPFNQIRLFIYKLLVTIKLMITRRSLVYLKLLFA

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Crispr_ID: CP033625_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033625_3

2206634-2206735

Orphan

Consensus_repeat	Method
TGTAGCCTCGCTAAGCGAAGCGCGAGCGATGAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033625_3

>merge|CP033625|3|2206634-2206735|CRISPRCasFinder
TGTAGCCTCGCTAAGCGAAGCGCGAGCGATGAGACAGCAGAACAGGTGGCTGAGAGAGTGCAGGAATGTGTAGCCTCGCTAAGCGAAGCGCGAGCGAGGAGA

>CP033625|3|2|2206634-2206735|CRISPRCasFinder
TGTAGCCTCGCTAAGCGAAGCGCGAGCGATGAGA	CAGCAGAACAGGTGGCTGAGAGAGTGCAGGAATG
TGTAGCCTCGCTAAGCGAAGCGCGAGCGAGGAGA

Protein	Signature genes	Signature genes Name	Protein_function
CP033625.1\|AYW24516.1\|2212342_2212750_-\|DNA-binding-transcriptional-regulator-H-NS	unknown	unknown	gnl\|CDD\|182858
CP033625.1\|AYW24508.1\|2204458_2205136_+\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|273030
CP033625.1\|AYW24510.1\|2206136_2206580_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP033625.1\|AYW24507.1\|2203748_2204459_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|185014
CP033625.1\|AYW24505.1\|2198476_2202220_+\|nitrate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|227346
CP033625.1\|AYW24515.1\|2211318_2212221_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|184021
CP033625.1\|AYW24518.1\|2214076_2216752_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|237515
CP033625.1\|AYW24502.1\|2193932_2194583_-\|two-component-system-response-regulator-NarL	unknown	unknown	gnl\|CDD\|182619
CP033625.1\|AYW24520.1\|2217228_2217876_+\|YchE-family-NAAT-transporter	unknown	unknown	gnl\|CDD\|236850
CP033625.1\|AYW24509.1\|2205132_2206029_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
CP033625.1\|AYW24519.1\|2216829_2217015_+\|hypothetical-protein	unknown	unknown	unknown
CP033625.1\|AYW24511.1\|2207659_2208502_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
CP033625.1\|AYW24512.1\|2208544_2209003_-\|YchJ-family-protein	unknown	unknown	gnl\|CDD\|234966
CP033625.1\|AYW24517.1\|2213311_2213929_+\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
CP033625.1\|AYW24506.1\|2202216_2203752_+\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
CP033625.1\|AYW24504.1\|2196682_2198071_+\|NarK-family-nitrate/nitrite-MFS-transporter	unknown	unknown	gnl\|CDD\|184994
CP033625.1\|AYW24503.1\|2194593_2196372_-\|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX	unknown	unknown	gnl\|CDD\|182581
CP033625.1\|AYW24514.1\|2210107_2211121_+\|two-component-system-response-regulator-RssB	unknown	unknown	gnl\|CDD\|182652
CP033625.1\|AYW24513.1\|2209115_2210018_+\|patatin-like-phospholipase-RssA	unknown	unknown	gnl\|CDD\|182352
CP033625.1\|AYW24501.1\|2192553_2193936_+\|YchO-family-inverse-autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|236661

Protein	Function_ID	Function_description	E-value
CP033625.1\|AYW24516.1\|2212342_2212750_-\|DNA-binding-transcriptional-regulator-H-NS	gnl\|CDD\|182858	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS.	2.61324e-79
CP033625.1\|AYW24508.1\|2204458_2205136_+\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|273030	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain., respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160). [Energy metabolism, Anaerobic].	2.8765e-130
CP033625.1\|AYW24510.1\|2206136_2206580_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.05574e-32
CP033625.1\|AYW24507.1\|2203748_2204459_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|185014	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone.	1.14838e-83
CP033625.1\|AYW24505.1\|2198476_2202220_+\|nitrate-reductase-subunit-alpha	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
CP033625.1\|AYW24515.1\|2211318_2212221_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|184021	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU.	0
CP033625.1\|AYW24518.1\|2214076_2216752_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	gnl\|CDD\|237515	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional.	0
CP033625.1\|AYW24502.1\|2193932_2194583_-\|two-component-system-response-regulator-NarL	gnl\|CDD\|182619	PRK10651, PRK10651, transcriptional regulator NarL; Provisional.	1.26442e-140
CP033625.1\|AYW24509.1\|2205132_2206029_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.2204e-15
CP033625.1\|AYW24520.1\|2217228_2217876_+\|YchE-family-NAAT-transporter	gnl\|CDD\|236850	PRK11111, PRK11111, YchE family NAAT transporter.	5.03226e-138
CP033625.1\|AYW24511.1\|2207659_2208502_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	4.09997e-176
CP033625.1\|AYW24512.1\|2208544_2209003_-\|YchJ-family-protein	gnl\|CDD\|234966	PRK01617, PRK01617, hypothetical protein; Provisional.	7.51559e-107
CP033625.1\|AYW24517.1\|2213311_2213929_+\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	1.66434e-117
CP033625.1\|AYW24506.1\|2202216_2203752_+\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
CP033625.1\|AYW24504.1\|2196682_2198071_+\|NarK-family-nitrate/nitrite-MFS-transporter	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	0
CP033625.1\|AYW24503.1\|2194593_2196372_-\|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX	gnl\|CDD\|182581	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX.	0
CP033625.1\|AYW24514.1\|2210107_2211121_+\|two-component-system-response-regulator-RssB	gnl\|CDD\|182652	PRK10693, PRK10693, two-component system response regulator RssB.	0
CP033625.1\|AYW24513.1\|2209115_2210018_+\|patatin-like-phospholipase-RssA	gnl\|CDD\|182352	PRK10279, PRK10279, patatin-like phospholipase RssA.	0
CP033625.1\|AYW24501.1\|2192553_2193936_+\|YchO-family-inverse-autotransporter-domain-containing-protein	gnl\|CDD\|236661	PRK10177, PRK10177, YchO/YchP family invasin.	0

>CP033625.1|AYW24510.1|2206136_2206580_+|Lrp/AsnC-family-transcriptional-regulator
MNDVLDEIDRAILTCLTQDARVSLKVLSARVGLTSPSTAERVKRLEERGVIQGYGARVNLAALGYSLQALVRVRPLPGLLQKVDKYIQAMPECIESDKVTGEDCFVMRLVVRDIAQLDTLLDGLAEYAQCNTSVVKSSPVKRRLPPL
>CP033625.1|AYW24509.1|2205132_2206029_-|DMT-family-transporter
MQLTRGVWQMSLAMIISGSIGAFVLLSGLPVTDVVFWRCLIGALTLLVFIVLSRQPFSRLTRFTLALAVIGGAALVVNWLLLFAAYSRISIGMATVVYNTQPFMLVLMGMVLGERVSAVKWGWLLLAFGGVVILLSSELMPAHEEGLTTGVLLALGAAFFYALTAIIARKLHPLPAQHIAFIQVLVGVVMLLPLVHAPELTASFPWRYLLILGIVHTGIMYQLLYSAIQKLPTPVTGSLSFIYPLVAMVVDYLVFHHALSAVQLLGGMLILFAAAGNNLGWGEKKPRRGGVSEQSRAS
>CP033625.1|AYW24508.1|2204458_2205136_+|respiratory-nitrate-reductase-subunit-gamma
MHFLNMFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGILGIFAGHFLGMLTPHWMYESFLPIDVKQKMAMIAGGACGVMTLVGGLLLLKRRLLSPRVRATTTGADILILSLLMVQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASQHLDGVAFIFRVHLVLGMTLFLLFPFSRLVHIWSAPVEYLTRKYQIVRARR
>CP033625.1|AYW24507.1|2203748_2204459_+|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MIELVIVSRLLEYPDAALWQHQQEMFEALASSEKLSKEDAHALGVFLRDLVAQDPLDAQAAYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYERHGLLLDSHELPDHLPLYLEYLAQLPEEEALGGLRDVAPILGLLSARLQQRESRYAVLFELLLKLANTQVDSQKVAEKIADEARDDTPQALDAVWEEEQVKFFADQGCGESEISAHQRRFAGAVAPQYLNISNGGQQ
>CP033625.1|AYW24506.1|2202216_2203752_+|nitrate-reductase-subunit-beta
MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNVESKPGVGFPNDWENQEKWKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYEPFDYDYQNLHNAPESKHQPIARPRSLITGQRMDKITSGPNWEEILGGEFEKRAKDQNFDNMQKAMYGQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIESGMPTVCSETCVGRIRYLGVLLYDADAIENAASTENEKDLYQRQLDVFLDPNDPKVIEQALKDGVPQGVIEAAQQSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLANLLTAGDTQPVLLALKRMLAMRHYKRAETVDGVVDTRALEEVGLSEAQAQEMYRYLAIANYEDRFVVPSSHREQAREAFPEKNGCGFSFGDGCHGSDSQFNLFNSRRIDAIDVTSKTEPHA
>CP033625.1|AYW24505.1|2198476_2202220_+|nitrate-reductase-subunit-alpha
MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPLMRKRLMKMWREAKVQHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTVKTYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPMTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDKPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRTLRASDLVDSLGQENNPEWKTVAFDEKGDMTVPNGSLGFRWGDKGKWNLEQRDGKTGEEIELRLSLLGSHDEVANVGFPYFGGEGSEHFNKVDLENILLHKLPAKRLQLADGSTALVTTVYDLTMANYGLERGLNDDNCAAGYDEVKAYTPAWAEKITGVSRAHIIRTAREFADNADKTHGRSMIIVGAGLNHWFHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAQELLSPMADKSRYSGHLIDFNVRAERMGWLPSAPQLGVNPLRIADEAKKAGMTPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEYMLKYLLGTENGIQGKDLGKQGGVKPEEVEWRDNGLDGKLDLVVTLDFRLSSTCLYSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESKSDWEIYKGIAKKFSEVCMGHLGKETDVVTLPIQHDSAAEMAQPLDVKDWKKGECDLIPGKTAPHIIPVERDYPATYERFTSIGPLLETIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPKLETAIDAAEMILTLAPETNGQVAVKAWQALSEITGREHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLTGRQSLYQDHQWMRDFGESLLVYRPPIDTRSVKAVMGEKSNGNPEKALNFLTPHQKWGIHSTYSDNLLMLTLSRGGPIVWMSEADAKDLGIEDNDWIEVFNANGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEITGQRGGIHNSVTRITPKPTHMIGGYGHLAYGFNYYGTVGSNRDEFVVVRKMKNINWLDGEGNDQVQESVK
>CP033625.1|AYW24504.1|2196682_2198071_+|NarK-family-nitrate/nitrite-MFS-transporter
MSQSSLPEKANRSVITDWRPEDPEFWQQRGHRVASRNLWISVPCLLLAFCVWMLFSAVAVNLNKVGFQFTTDQLFMLTALPALSGALLRVPYAFMVPLFGGRRWTAFSTGIMIVPCVWLGFAVQDTSTPFSIFVIISLLCGFAGANFASSMANISFFFPKAKQGGALGVNGGLGNMGVSVMQLVAPLVVSISIFAVFGGNGSEQPDGSMLYLENAAWIWVPFLIIFTLAAWFFMNDLSASKASLSEQLPVLKRLHLWIMALLYLATFGSFIGFSAGFAMLSKTQFPDVQILHYAFFGPFIGALARSMGGAISDRLGGTRVTLVNFVVMAVFCALLFLTLPTNGQGGNFIAFFAVFMVLFLTAGLGSASTFQMISVIFRKLTMDRVKAQGGSEAQAMREAATDTAAALGFISAIGAIGGFFIPKAFGISLDLTGSPAGAMKVFLVFYIACVVITWAVYGRKRQ
>CP033625.1|AYW24503.1|2194593_2196372_-|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX
MLKRLFTPLTLVNQLALIVLLATIIGVAGMAISARLVNGVQGSAHAINKAGSLRMQSYRLLAAIPLNENDQKLVADMTATVFSPELQNSARRDGQEIQLKALQQYWQLALAPGMQRAVNQAEVAQDVADFVDRIDQLVTAFDHTTEQRIEREVWIHRILAIGMALLLIFTIIWLRARLLRPWKQLLSMARAVSQRDFTQRAHISGRNEMATLGMALNNMSEELAESYAVLERRVQEKTAGLEQKNEILAFLWQANRRLHSSAPLCERISPVLNGLQGLTLLRDIEVRVYDLEDEDNHQEFTCHSDDDCDDKGCYLCPRNLPPLPDGGTTLKWRLSDAHSQYGILLATLPVGRHLSHDQQQLVDTLVEQLTSTLALDRHQEKQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPTESRQLLGQIRNELNTSWAQLRELLTTFRLQLTEPGLRPALEASCQEYSAHFGFTVQLDYQLPPRFVPSHQAIHLLQIAREALSNALKHASATEVTVTVSQRDNQVRLVVADNGRGVPDHAERSNHYGLIIMRDRAQSLRGDCQVRRRETGGTEVIVTFIPEKTFSIQ
>CP033625.1|AYW24502.1|2193932_2194583_-|two-component-system-response-regulator-NarL
MSQQERATILLIDDHPMLRTGVKQLISMAPDIQVIGEASNGAQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRVVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATSDRDISQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF
>CP033625.1|AYW24501.1|2192553_2193936_+|YchO-family-inverse-autotransporter-domain-containing-protein
MAVSFRLLPTLTFLLLLPGVPVWALTASDTTRPAQAQDPLPDMGIAPQVDDDARHFAEVAKKFGEASMSDNGLTAGEQAQLFAISKIGNEVSHQLESWLSPWGNANVDLLVDKEGKFTGSKGSWFVPLQDNDRYLTWNQYSVTRREHDLVGNIGLGQRWRVGGWLLGYNSFYDKVLSESLARGSVGAEAWGEYLRLSANYYHPLGDWQLRDNQTQEQRMAAGYDVTAQARLPFYQHINTSVSVEQYFGDSVDLFHSGTGYHNPVAVSVGLNYTPVPLVTVTAKHKQGENGVSQNNVGLKLNYRFGVPLKQQLAADEVAISNSLRGSRFDSPERDNLPVVEYRQRKNLTVYLATPPWDLQSGETVQLKLQIHSLHGIKALHWQGDTQALSLTPPVDASSPDGWSIIMPVWNSEPGAANRWRLSVVVEDKQGQRVSSNEIALALTEPLVKFTTPGVSWTDSP
>CP033625.1|AYW24511.1|2207659_2208502_-|formyltetrahydrofolate-deformylase
MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFNDATLLADLDSALPEGSIRELNPAGRRRVVILVTKEAHCLGDLLMKANYGGLDVDIAAVIGNHDTLRSLVERFGIPFELVSHEGLSREEHDQRMGDAIAAHEPDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYQVLAQRVFVYGNRTIIL
>CP033625.1|AYW24512.1|2208544_2209003_-|YchJ-family-protein
MSQLCPCGSALEYSSCCQRYLSGAELAPGPSQLMRSRYSAFVMKDADYLIKTWHPSCQAQQFRAELEKGFSQTEWLGLTLFASDEGRAPNEGFVSFVARFNDNNRPGAIIERSRFLKENGQWYYIDGTRPLIGRNDPCPCGSGKKFKKCCGQ
>CP033625.1|AYW24513.1|2209115_2210018_+|patatin-like-phospholipase-RssA
MRKLKIGLALGAGAARGWSHIGVINALQRAGIEIDIVAGCSIGSLVGAAYACNRLPALESWVCSFSNWDVLKLMDLSWRRGGLLRGEKVFNHYRRIMPVTEIERCERRFAAVATNLSTGRELWFTEGDLHLAIRASCSMPGLMSPVRHNGYWLVDGAVVNPVPVSLTRAMGADIVIAVDLQHDAHLMQQDLFSLETPRQEAEEKEGPWHTRLRARLTRMSSRRTAVTPTAMEIMTTSIQVLENRLKRNRMAGDPPDILLQPYCPQVSTLDFHRAGEAIAAGQLAVEKKMDELLPLVRTAV
>CP033625.1|AYW24514.1|2210107_2211121_+|two-component-system-response-regulator-RssB
MTQPLAGKQILIVEDEPVFRSLLHGWLTSLGATTFQAEDGKDALHKMTEVHPDLMICDISMPRMNGLELVETLRNRGEQLPILMISATENMADIAKALRLGVQDVLLKPVKDFDRLRETVYACLYPAMFSSRVEEEERLFEDWDALVSNPIAASRLLQELQPPVQQEMSHCRIHYRQLVSADKPGLVLDIAPLSENDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQGQRLPEMGSLLKQVNQLLRQANLPGQFPLLVGYYHSGLKNLILVSAGLNGTLNTGEHQIQISNGVPLGTLGDAYLNQISQRCTSWQCQIWGAGGRLRLMLSAE
>CP033625.1|AYW24515.1|2211318_2212221_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MAALNSKVRKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLEEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSRDNLAEMISRFDETGASQIMVEPVEDVTAYGVVDCKGESLKPGESVPMVGVVEKPKADVAPSNLAVVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHKTLGDDFKAWLETAVAK
>CP033625.1|AYW24516.1|2212342_2212750_-|DNA-binding-transcriptional-regulator-H-NS
MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEENAAAAEIEERTRKLQQYREMLIADGIDPNELLSTMAAVKAGTKTKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI
>CP033625.1|AYW24517.1|2213311_2213929_+|thymidine-kinase
MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRFGAGKVSSRIGLSSPARLYNPQTSLFDDIAAEHQLKPIHCVLVDESQFLTREQVHELSEVVDTLDIPVLCYGLRTDFRGELFTGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQEGRPYNEGEQVVIGGNERYVSVCRKHYKEALSVGSLTKVQNQHRPC
>CP033625.1|AYW24518.1|2214076_2216752_-|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase
MAVTNIAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKEATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFASHGGYLLQGKELKAVQDIILKNGALNAAIVGQPAAKIAELAGFTVPATTKILIGEVTNVDESEPFAHEKLSPTLAMYRAKDFEDAVAKAEKLVAMGGIGHTSCLYTDQDNQPARVAYFGQMMKTARILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLTIVRKGADLANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMVAITTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLLKEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLANALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKLLAWLESIKAELGIPKSIREAGVQEADFLAHVDKLSEDAFDDQCTGANPRYPLISELKQILLDTYYGREFVEGEAGAKAEVAPVKAEKKAKKSA
>CP033625.1|AYW24519.1|2216829_2217015_+|hypothetical-protein
MHVNVYVEKSGRCFTDLLKKLYLFRFQVLLPSTLLVSSRLLTSEYKLRDLDQVLSLLIPFS
>CP033625.1|AYW24520.1|2217228_2217876_+|YchE-family-NAAT-transporter
MTQSLFDFSAYFKFFIGLFALVNPVGIIPVFISMTSYQPAAVRNKTNLTANLSVAIILLTSLFLGDGILQIFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSWVHLVGFSLAIAVFALCCWGIFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKALFPGLLS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP033625_2	2.1\|1769324\|40\|CP033625\|PILER-CR	1769324-1769363	40	CP033625.1	1769627-1769666	1	0.975
CP033625_2	2.2\|1769425\|40\|CP033625\|PILER-CR	1769425-1769464	40	CP033625.1	1769627-1769666	1	0.975

1. spacer 2.1|1769324|40|CP033625|PILER-CR matches to position: 1769627-1769666, mismatch: 1, identity: 0.975

taccccgattagttcgccatcccgtaggcctgataagcga	CRISPR spacer
taccccgattagttcgccattccgtaggcctgataagcga	Protospacer
********************.*******************

2. spacer 2.2|1769425|40|CP033625|PILER-CR matches to position: 1769627-1769666, mismatch: 1, identity: 0.975

taccccgattagttcgccatcccgtaggcctgataagcga	CRISPR spacer
taccccgattagttcgccattccgtaggcctgataagcga	Protospacer
********************.*******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP033625_4	4.1\|4062611\|25\|CP033625\|CRISPRCasFinder	4062611-4062635	25	MK448233	Klebsiella phage ST11-VIM1phi8.1, complete genome	8458-8482	1	0.96
CP033625_4	4.1\|4062611\|25\|CP033625\|CRISPRCasFinder	4062611-4062635	25	MK448235	Klebsiella phage ST512-KPC3phi13.1, complete genome	8458-8482	1	0.96
CP033625_4	4.1\|4062611\|25\|CP033625\|CRISPRCasFinder	4062611-4062635	25	MK448231	Klebsiella phage ST101-KPC2phi6.1, complete genome	11394-11418	1	0.96

1. spacer 4.1|4062611|25|CP033625|CRISPRCasFinder matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 1, identity: 0.96

ccccgccggtacgcagcgtggttac	CRISPR spacer
cctcgccggtacgcagcgtggttac	Protospacer
**.**********************

2. spacer 4.1|4062611|25|CP033625|CRISPRCasFinder matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 1, identity: 0.96

ccccgccggtacgcagcgtggttac	CRISPR spacer
cctcgccggtacgcagcgtggttac	Protospacer
**.**********************

3. spacer 4.1|4062611|25|CP033625|CRISPRCasFinder matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 1, identity: 0.96

ccccgccggtacgcagcgtggttac	CRISPR spacer
cctcgccggtacgcagcgtggttac	Protospacer
**.**********************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1141947 : 1208963

Salmonella_phage(80.43%)

tail,integrase,lysis,plate,head,holin,tRNA,capsid,portal

attL 1140790:1140827|attR 1197598:1197635

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1140790:1140827	attL	NA	NA	NA	NA
AYW23561.1\|1141947_1142988_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	1.7e-189	92.7
AYW23562.1\|1142991_1143624_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	3.8e-64	57.1
AYW23563.1\|1143740_1143983_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	6.8e-38	97.5
AYW23564.1\|1144015_1144525_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	3.9e-83	94.7
AYW27403.1\|1144532_1144733_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	2.4e-33	100.0
AYW23565.1\|1144696_1145038_+	hypothetical protein	E5G6L5	Salmonella_phage	1.7e-55	97.3
AYW23566.1\|1145105_1145339_+	DUF2732 family protein	E5G6L6	Salmonella_phage	1.2e-31	96.1
AYW23567.1\|1145338_1145566_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	3.0e-35	97.3
AYW23568.1\|1145562_1146420_+	DNA adenine methylase	E5G6L8	Salmonella_phage	1.1e-159	96.1
AYW23569.1\|1146416_1148831_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	98.6
AYW23570.1\|1148984_1149173_+	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
AYW23571.1\|1149111_1149417_+	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
AYW23572.1\|1149531_1150209_+	hypothetical protein	NA	NA	NA	NA
AYW23573.1\|1150487_1151639_+	TIGR02391 family protein	NA	NA	NA	NA
AYW23574.1\|1151690_1152725_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	5.9e-171	87.3
AYW23575.1\|1152724_1154491_-	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.1
AYW23576.1\|1154633_1155467_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
AYW23577.1\|1155483_1156542_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.9e-180	93.1
AYW23578.1\|1156545_1157196_+	hypothetical protein	E5G6M7	Salmonella_phage	8.7e-112	96.3
AYW23579.1\|1157291_1157756_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.1e-76	89.0
AYW23580.1\|1157755_1157959_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	5.2e-31	91.0
AYW23581.1\|1157962_1158178_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
AYW23582.1\|1158158_1158674_+	lysozyme	E5G6N1	Salmonella_phage	4.0e-88	91.8
AYW23583.1\|1158670_1159099_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	1.5e-59	91.5
AYW23584.1\|1159028_1159232_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	4.7e-24	79.1
AYW23585.1\|1159194_1159626_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.3e-71	93.0
AYW23586.1\|1159618_1160083_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	5.5e-60	83.6
AYW23587.1\|1160170_1161682_+	hypothetical protein	NA	NA	NA	NA
AYW23588.1\|1161808_1162387_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	1.6e-93	86.5
AYW23589.1\|1162383_1162743_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	9.5e-52	86.6
AYW23590.1\|1162729_1163638_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	4.6e-143	90.4
AYW23591.1\|1163630_1164236_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.5e-110	92.5
AYW23592.1\|1164232_1165954_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	3.5e-152	78.9
AYW23593.1\|1165953_1166136_+	hypothetical protein	NA	NA	NA	NA
AYW27404.1\|1166116_1166269_-	hypothetical protein	U5P083	Shigella_phage	5.8e-11	71.1
AYW23594.1\|1166932_1167499_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	2.1e-85	85.2
AYW23595.1\|1167641_1168814_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	2.5e-202	89.2
AYW23596.1\|1168823_1169339_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	4.8e-89	94.7
AYW23597.1\|1169393_1169696_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	5.3e-40	89.0
AYW23598.1\|1169710_1169830_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
AYW23599.1\|1169822_1172900_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.3
AYW23600.1\|1172896_1173382_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	4.8e-67	80.6
AYW23601.1\|1173378_1174479_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.2e-175	86.9
AYW23602.1\|1174569_1174788_+	transcriptional regulator	Q53ZE7	Salmonella_virus	1.9e-18	71.9
AYW23603.1\|1175191_1175965_+	RNA-directed DNA polymerase	NA	NA	NA	NA
AYW23604.1\|1176399_1176957_-	hypothetical protein	NA	NA	NA	NA
AYW23605.1\|1176959_1177541_-	ComF family protein	NA	NA	NA	NA
AYW23606.1\|1177788_1178664_-	DNA-binding protein	NA	NA	NA	NA
AYW23607.1\|1179617_1179782_+	antitoxin	NA	NA	NA	NA
AYW23608.1\|1180625_1181984_-	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA
AYW23609.1\|1182560_1183010_-	phage virion morphogenesis protein	O80313	Escherichia_phage	1.8e-44	63.8
AYW23610.1\|1183383_1183629_-\|holin	holin	S4TNY4	Salmonella_phage	2.7e-26	71.8
AYW23611.1\|1184026_1184233_-	hypothetical protein	A0A1B5FPB7	Escherichia_phage	7.4e-09	55.3
AYW23612.1\|1184673_1185687_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
AYW23613.1\|1185697_1186678_-	PTS sorbitol transporter subunit IIB	NA	NA	NA	NA
AYW23614.1\|1186674_1187049_-	PTS sorbitol transporter	NA	NA	NA	NA
AYW23615.1\|1187045_1187567_-	PTS sorbitol transporter subunit IIC	NA	NA	NA	NA
AYW23616.1\|1187679_1187964_-	transcriptional regulator	A0A2I7S995	Vibrio_phage	4.6e-17	64.7
AYW23617.1\|1188058_1188415_+	XRE family transcriptional regulator	NA	NA	NA	NA
AYW23618.1\|1188733_1190803_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	8.7e-73	34.6
AYW23619.1\|1190838_1191054_-	AlpA family transcriptional regulator	NA	NA	NA	NA
AYW23620.1\|1191535_1195339_-	DNA-binding protein	NA	NA	NA	NA
AYW23621.1\|1195527_1196175_-	hypothetical protein	NA	NA	NA	NA
AYW23622.1\|1196176_1196266_-\|integrase	integrase	NA	NA	NA	NA
AYW23623.1\|1198096_1198579_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
1197598:1197635	attR	NA	NA	NA	NA
AYW23624.1\|1198689_1199166_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
AYW23625.1\|1199155_1199446_+	RnfH family protein	NA	NA	NA	NA
AYW23626.1\|1199512_1199854_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AYW23627.1\|1200001_1201663_-	DNA repair protein RecN	NA	NA	NA	NA
AYW23628.1\|1201749_1202628_-	NAD(+) kinase	NA	NA	NA	NA
AYW23629.1\|1202752_1203343_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
AYW23630.1\|1203463_1204750_-	DUF21 domain-containing protein	NA	NA	NA	NA
AYW23631.1\|1204769_1205561_-	inner membrane protein YpjD	NA	NA	NA	NA
AYW23632.1\|1205724_1207089_+	signal recognition particle protein	NA	NA	NA	NA
AYW23633.1\|1207348_1207597_+	30S ribosomal protein S16	NA	NA	NA	NA
AYW23634.1\|1207615_1208164_+	ribosome maturation factor RimM	NA	NA	NA	NA
AYW23635.1\|1208195_1208963_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_2

1310929 : 1322307

Morganella_phage(25.0%)

integrase

attL 1310090:1310104|attR 1318577:1318591

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1310090:1310104	attL	NA	NA	NA	NA
AYW27407.1\|1310929_1312198_+\|integrase	site-specific integrase	A0A1W6JPG6	Morganella_phage	3.3e-147	60.8
AYW23721.1\|1312205_1313159_+	hypothetical protein	NA	NA	NA	NA
AYW23722.1\|1313285_1313504_+	AlpA family phage regulatory protein	NA	NA	NA	NA
AYW23723.1\|1313503_1313935_+	hypothetical protein	A0A1W6JPH9	Morganella_phage	3.1e-25	48.9
AYW23724.1\|1313948_1314758_+	antA/AntB antirepressor family protein	A0A0R6PJV6	Moraxella_phage	3.5e-30	54.5
AYW23725.1\|1314750_1314930_+	DUF4222 domain-containing protein	NA	NA	NA	NA
AYW27408.1\|1315576_1315771_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
AYW27409.1\|1315763_1315943_+	hypothetical protein	NA	NA	NA	NA
AYW23726.1\|1315939_1316443_+	hypothetical protein	NA	NA	NA	NA
AYW23727.1\|1316439_1316649_+	hypothetical protein	NA	NA	NA	NA
AYW23728.1\|1316645_1317272_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.8e-26	37.8
AYW23729.1\|1317281_1317632_+	hypothetical protein	A0A1B5FPL8	Escherichia_phage	8.9e-39	69.1
AYW23730.1\|1317624_1320075_+	DNA primase	Q7M2A8	Enterobacteria_phage	1.1e-138	38.0
1318577:1318591	attR	NA	NA	NA	NA
AYW23731.1\|1320382_1320781_+	hypothetical protein	NA	NA	NA	NA
AYW23732.1\|1320777_1321224_+	single-stranded DNA-binding protein	NA	NA	NA	NA
AYW23733.1\|1321237_1321510_+	PerC family transcriptional regulator	NA	NA	NA	NA
AYW23734.1\|1321516_1321900_+	superinfection immunity protein	A0A0S2SY85	Pseudomonas_phage	2.1e-17	45.4
AYW23735.1\|1321929_1322307_+	hypothetical protein	A0A0M4QWT0	Salmonella_phage	1.1e-21	44.7

DBSCAN-SWA_3

1333730 : 1399813

Salmonella_phage(40.43%)

terminase,tail,integrase,holin,protease,capsid,transposase

attL 1334725:1334742|attR 1402561:1402578

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW23750.1\|1333730_1335197_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.5e-87	38.7
1334725:1334742	attL	NA	NA	NA	NA
AYW23751.1\|1335264_1336842_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
AYW23752.1\|1337033_1338287_+\|integrase	site-specific integrase	A0A1X9TCT6	Enterobacter_phage	3.5e-202	83.6
AYW23753.1\|1338548_1339211_-	serine/threonine protein phosphatase	K7P6H8	Enterobacteria_phage	4.7e-97	75.5
AYW23754.1\|1339207_1339810_-	adenine methylase	A0A193GYV6	Enterobacter_phage	4.0e-103	92.4
AYW23755.1\|1339806_1340313_-	hypothetical protein	NA	NA	NA	NA
AYW23756.1\|1340309_1340468_-	DUF1317 family protein	T1SAR0	Salmonella_phage	8.7e-18	80.8
AYW23757.1\|1340460_1340754_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	4.0e-32	71.1
AYW23758.1\|1340863_1341112_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	2.8e-31	78.0
AYW23759.1\|1341162_1342185_-	recombination protein RecT	Q858E1	Salmonella_phage	4.0e-180	95.3
AYW23760.1\|1342194_1343094_-	endonuclease	Q858E0	Salmonella_phage	6.5e-158	91.0
AYW23761.1\|1343090_1343390_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	2.1e-20	54.5
AYW23762.1\|1343756_1344338_-	XRE family transcriptional regulator	Q858D7	Salmonella_phage	7.1e-65	64.3
AYW23763.1\|1344492_1344726_+	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
AYW23764.1\|1344872_1345082_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.8e-26	78.3
AYW23765.1\|1345081_1345849_+	primosomal protein	A0A193GZ86	Enterobacter_phage	8.9e-140	91.4
AYW23766.1\|1345845_1346631_+	replication protein	A0A193GYX1	Enterobacter_phage	3.7e-133	87.7
AYW23767.1\|1346750_1347098_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	1.9e-49	81.7
AYW27410.1\|1347290_1347692_+	hypothetical protein	A0A2H4N7F5	Pectobacterium_phage	8.7e-22	51.6
AYW27411.1\|1347763_1347973_+	hypothetical protein	NA	NA	NA	NA
AYW23768.1\|1347969_1348224_+	hypothetical protein	NA	NA	NA	NA
AYW27412.1\|1348223_1348487_+	hypothetical protein	A0A2P0P958	Salmonella_phage	3.5e-27	65.5
AYW23769.1\|1349180_1349420_+	hypothetical protein	G8C7S3	Escherichia_phage	8.6e-09	51.7
AYW23770.1\|1349419_1349758_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	3.1e-44	79.1
AYW23771.1\|1349832_1350090_+	lF-82	NA	NA	NA	NA
AYW23772.1\|1350167_1350752_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	9.9e-91	88.6
AYW23773.1\|1352266_1352638_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	6.8e-61	93.5
AYW23774.1\|1352688_1352889_+	hypothetical protein	NA	NA	NA	NA
AYW23775.1\|1353225_1353414_+	hypothetical protein	NA	NA	NA	NA
AYW23776.1\|1353435_1353639_+	hypothetical protein	NA	NA	NA	NA
AYW23777.1\|1353642_1355322_+\|tail	phage tail protein	T1S9Z7	Salmonella_phage	3.6e-194	59.3
AYW23778.1\|1355318_1355624_+	hypothetical protein	Q2A090	Sodalis_phage	1.1e-16	51.3
AYW27413.1\|1355905_1356304_+	peptidase	T1SAP9	Salmonella_phage	5.6e-37	59.5
AYW23779.1\|1356316_1357324_+\|capsid	phage capsid protein	T1S9H9	Salmonella_phage	2.1e-181	92.8
AYW23780.1\|1357333_1357726_+	hypothetical protein	T1SA71	Salmonella_phage	1.5e-55	89.9
AYW23781.1\|1357718_1357997_+	hypothetical protein	T1SA01	Salmonella_phage	1.1e-20	58.9
AYW23782.1\|1358045_1358657_+	hypothetical protein	T1SAQ2	Salmonella_phage	9.2e-47	48.8
AYW23783.1\|1358656_1361134_+	hypothetical protein	G9L6D0	Escherichia_phage	2.3e-266	56.4
AYW23784.1\|1361135_1361606_+	hypothetical protein	Q858G2	Salmonella_phage	9.5e-44	55.3
AYW23785.1\|1361598_1362096_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	8.9e-24	41.7
AYW23786.1\|1362108_1364853_+	hypothetical protein	A0A193GYI3	Enterobacter_phage	3.9e-97	39.7
AYW23787.1\|1364852_1368242_+	hypothetical protein	G9L6D4	Escherichia_phage	2.4e-120	42.0
AYW23788.1\|1368251_1368866_+	hypothetical protein	NA	NA	NA	NA
AYW23789.1\|1368901_1369054_-	transmembrane anchored protein	G9L6D9	Escherichia_phage	5.6e-14	83.7
AYW23790.1\|1369146_1369482_-	hypothetical protein	NA	NA	NA	NA
AYW23791.1\|1369483_1369672_-	hypothetical protein	NA	NA	NA	NA
AYW23792.1\|1369823_1370513_-	anti-repressor protein	A0A193GYJ9	Enterobacter_phage	9.9e-74	58.5
AYW23793.1\|1371002_1371836_+	hypothetical protein	NA	NA	NA	NA
AYW23794.1\|1372049_1372346_-	hypothetical protein	T1SA06	Salmonella_phage	1.2e-23	62.7
AYW23795.1\|1375014_1375290_+	hypothetical protein	NA	NA	NA	NA
AYW23796.1\|1375402_1375807_+	hypothetical protein	T1SA79	Salmonella_phage	2.1e-55	82.6
AYW23797.1\|1375793_1376099_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	4.6e-39	81.4
AYW23798.1\|1376088_1376718_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	1.5e-92	78.4
AYW23799.1\|1376714_1377215_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	1.1e-69	90.0
AYW23800.1\|1377401_1379270_-	phosphatase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6
AYW23801.1\|1379253_1380432_-	anaerobic sulfatase maturase	NA	NA	NA	NA
AYW23802.1\|1380725_1381958_-	MFS transporter	NA	NA	NA	NA
AYW23803.1\|1382055_1382943_+	LysR family transcriptional regulator	NA	NA	NA	NA
AYW23804.1\|1383039_1383231_-	DUF2633 family protein	G9L6F2	Escherichia_phage	3.3e-19	79.3
AYW23805.1\|1383583_1385812_+	sensor domain-containing phosphodiesterase	NA	NA	NA	NA
AYW23806.1\|1385865_1387398_-	exopolyphosphatase	NA	NA	NA	NA
AYW23807.1\|1387401_1389462_-	polyphosphate kinase 1	NA	NA	NA	NA
AYW23808.1\|1389642_1390284_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	9.0e-29	41.1
AYW23809.1\|1390280_1391318_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	8.2e-72	44.5
AYW23810.1\|1391581_1392475_+	ROK family protein	NA	NA	NA	NA
AYW23811.1\|1392484_1393918_+	6-phospho-beta-glucosidase	NA	NA	NA	NA
AYW23812.1\|1394135_1394762_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
AYW23813.1\|1394857_1396144_+	uracil permease	Q9KX94	Enterobacteria_phage	1.9e-65	38.1
AYW23814.1\|1396242_1396944_+	DnaA inactivator Hda	NA	NA	NA	NA
AYW23815.1\|1396940_1397852_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	3.5e-74	58.8
AYW23816.1\|1397980_1398340_-	arsenate reductase (glutaredoxin)	NA	NA	NA	NA
AYW23817.1\|1398349_1399813_-\|protease	beta-barrel assembly-enhancing protease	NA	NA	NA	NA
1402561:1402578	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1790029 : 1798408

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW24135.1\|1790029_1791436_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.8e-37	28.7
AYW24136.1\|1791658_1792723_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.4e-105	55.0
AYW24137.1\|1792749_1793619_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	5.7e-111	67.0
AYW24138.1\|1793650_1794541_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	34.2
AYW24139.1\|1794555_1795110_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.6
AYW24140.1\|1795289_1796456_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	4.1e-112	54.7
AYW24141.1\|1797403_1798408_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.8e-31	29.5

DBSCAN-SWA_5

1930054 : 2002737

Klebsiella_phage(17.46%)

terminase,integrase,tail,holin,head,protease,capsid,portal

attL 1918596:1918614|attR 2009555:2009573

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1918596:1918614	attL	NA	NA	NA	NA
AYW24247.1\|1930054_1931047_-\|integrase	integrase	A0A192Y7M7	Salmonella_phage	4.9e-175	87.2
AYW24248.1\|1931048_1931276_-	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	3.8e-30	78.4
AYW24249.1\|1931308_1931587_-	hypothetical protein	K7PKM4	Enterobacterial_phage	6.7e-13	44.9
AYW24250.1\|1931583_1932492_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	9.8e-45	61.6
AYW24251.1\|1932484_1933561_-	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	2.1e-147	74.1
AYW24252.1\|1933688_1934474_-	hypothetical protein	A4JX52	Burkholderia_virus	1.4e-60	50.2
AYW24253.1\|1934473_1934773_-	hypothetical protein	K7PJS4	Enterobacterial_phage	3.8e-14	46.7
AYW24254.1\|1934860_1935778_-	hypothetical protein	A0A1W6JP69	Morganella_phage	3.1e-46	36.9
AYW27443.1\|1936224_1936872_-	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	9.3e-74	63.0
AYW24255.1\|1936976_1937174_+	hypothetical protein	H9C161	Pectobacterium_phage	2.7e-16	66.1
AYW24256.1\|1937199_1937661_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
AYW24257.1\|1937898_1938078_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.6e-15	73.1
AYW24258.1\|1938067_1939036_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.0e-84	66.4
AYW24259.1\|1939241_1940066_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	2.6e-113	69.5
AYW24260.1\|1940075_1940453_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	3.3e-47	72.8
AYW24261.1\|1940465_1941446_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	8.4e-135	67.2
AYW24262.1\|1941459_1942038_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.7e-50	56.7
AYW24263.1\|1942189_1942429_+	hypothetical protein	NA	NA	NA	NA
AYW27444.1\|1942599_1942899_+\|holin	holin	A0A286N2Q5	Klebsiella_phage	1.5e-39	84.8
AYW24264.1\|1942895_1943435_+	hypothetical protein	A0A286N2Q6	Klebsiella_phage	2.0e-101	98.9
AYW24265.1\|1943431_1943779_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.1e-40	81.7
AYW24266.1\|1943775_1944051_+	hypothetical protein	A0A286N2Q8	Klebsiella_phage	3.9e-05	70.3
AYW24267.1\|1944001_1944196_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	4.6e-21	87.3
AYW24268.1\|1944182_1944425_+	hypothetical protein	NA	NA	NA	NA
AYW24269.1\|1944553_1944799_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	1.6e-34	98.8
AYW24270.1\|1944835_1945246_+	hypothetical protein	NA	NA	NA	NA
AYW27445.1\|1945310_1945661_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	4.6e-51	80.7
AYW24271.1\|1945792_1946287_+\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	1.2e-81	92.0
AYW24272.1\|1946283_1948014_+\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	9.2e-302	83.4
AYW24273.1\|1948023_1948209_+	hypothetical protein	A0A1B5FP99	Escherichia_phage	5.2e-14	63.9
AYW24274.1\|1948208_1949438_+\|portal	phage portal protein	U5P411	Shigella_phage	1.7e-201	81.5
AYW24275.1\|1949424_1950078_+\|head,protease	HK97 family phage prohead protease	Q8W628	Enterobacteria_phage	2.1e-105	87.4
AYW24276.1\|1950092_1951301_+\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	9.9e-194	84.5
AYW24277.1\|1951327_1951543_+	hypothetical protein	M1FN89	Enterobacteria_phage	1.9e-07	42.4
AYW24278.1\|1951539_1951860_+\|head,tail	phage gp6-like head-tail connector protein	Q8SBH7	Shigella_phage	4.8e-15	43.1
AYW24279.1\|1951868_1952207_+\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.4e-41	74.1
AYW24280.1\|1952203_1952653_+	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	6.7e-63	82.6
AYW24281.1\|1952649_1952997_+	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	2.8e-32	63.7
AYW24282.1\|1953053_1953758_+\|tail	phage tail protein	K7PHL2	Enterobacterial_phage	2.5e-80	66.9
AYW24283.1\|1953788_1954193_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	3.2e-32	56.9
AYW24284.1\|1954195_1954501_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	1.4e-27	63.6
AYW24285.1\|1954574_1954808_+	hypothetical protein	K7PH16	Enterobacteria_phage	1.9e-08	47.2
AYW24286.1\|1954868_1958255_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	2.5e-303	57.9
AYW24287.1\|1958275_1958749_+	hypothetical protein	A0A286S298	Klebsiella_phage	4.6e-54	60.8
AYW24288.1\|1958735_1959221_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	3.0e-53	66.2
AYW24289.1\|1959230_1959611_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	2.1e-57	80.2
AYW24290.1\|1959607_1962691_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	71.9
AYW24291.1\|1965188_1965479_-	hypothetical protein	NA	NA	NA	NA
AYW24292.1\|1965968_1967243_-	hypothetical protein	NA	NA	NA	NA
AYW24293.1\|1967375_1967954_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	2.2e-90	93.4
AYW24294.1\|1968004_1968427_+	hypothetical protein	K7P834	Enterobacteria_phage	1.8e-25	44.5
AYW24295.1\|1968838_1969078_+	DNA polymerase V	I6PD82	Cronobacter_phage	7.5e-21	54.4
AYW24296.1\|1969080_1969407_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.6e-26	53.9
AYW24297.1\|1970010_1971156_-	porin	Q1MVN1	Enterobacteria_phage	1.1e-117	58.7
AYW27446.1\|1971547_1971814_-	hypothetical protein	NA	NA	NA	NA
AYW24298.1\|1971694_1971976_+	hypothetical protein	NA	NA	NA	NA
AYW24299.1\|1972018_1972726_+	phosphohydrolase	S4W232	Pandoravirus	2.8e-07	27.7
AYW24300.1\|1972769_1974203_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	2.0e-100	52.7
AYW27447.1\|1974183_1974678_+	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	9.7e-31	50.7
AYW24301.1\|1974652_1975564_-	drug/metabolite exporter YedA	NA	NA	NA	NA
AYW24302.1\|1975747_1976659_+	DUF808 domain-containing protein	NA	NA	NA	NA
AYW24303.1\|1976773_1978453_+	cellulose biosynthesis regulator YedQ	A0A127AWB9	Bacillus_phage	3.1e-20	41.1
AYW24304.1\|1978752_1978977_-	DUF2525 domain-containing protein	NA	NA	NA	NA
AYW24305.1\|1979101_1979299_+	protein DsrB	NA	NA	NA	NA
AYW24306.1\|1979331_1979955_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
AYW24307.1\|1980330_1980762_+	lipoprotein	NA	NA	NA	NA
AYW24308.1\|1980803_1982291_-	alpha-amylase	NA	NA	NA	NA
AYW24309.1\|1982491_1983292_+	cystine ABC transporter substrate-binding protein	NA	NA	NA	NA
AYW24310.1\|1983387_1984374_+	D-cysteine desulfhydrase	NA	NA	NA	NA
AYW24311.1\|1984389_1985058_+	cystine ABC transporter permease	NA	NA	NA	NA
AYW24312.1\|1985054_1985807_+	L-cystine ABC transporter ATP-binding protein YecC	G3M9Y6	Bacillus_virus	2.2e-26	34.4
AYW24313.1\|1986124_1986847_+	transcriptional regulator SdiA	NA	NA	NA	NA
AYW24314.1\|1986914_1987139_-	DUF2594 family protein	NA	NA	NA	NA
AYW24315.1\|1987600_1988257_+	two-component system response regulator UvrY	NA	NA	NA	NA
AYW24316.1\|1988253_1990086_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
AYW24317.1\|1990143_1990692_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
AYW24318.1\|1991265_1992273_-\|integrase	site-specific integrase	Q1I119	Pasteurella_virus	1.3e-103	56.5
AYW24319.1\|1992269_1993136_-	BRCT domain-containing protein	NA	NA	NA	NA
AYW24320.1\|1994500_1995658_+\|tail	phage tail protein	S4TP62	Salmonella_phage	2.5e-45	49.8
AYW24321.1\|1995785_1996274_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.6e-49	65.0
AYW24322.1\|1996285_1999225_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	2.6e-208	44.2
AYW24323.1\|1999205_1999382_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.5e-10	69.8
AYW24324.1\|1999378_1999678_-\|tail	phage tail assembly protein	B9A7B2	Serratia_phage	3.1e-32	73.7
AYW24325.1\|1999732_2000248_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.6e-63	70.0
AYW24326.1\|2000247_2001429_-\|tail	phage tail protein	A0A0A7NV69	Enterobacteria_phage	1.2e-156	69.3
AYW24327.1\|2001582_2002737_+	phage late control D family protein	B9A7A9	Serratia_phage	4.2e-178	80.7
2009555:2009573	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2829979 : 2840866

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW25099.1\|2829979_2833087_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
AYW25100.1\|2833141_2834407_+	MFS transporter	NA	NA	NA	NA
AYW25101.1\|2834437_2835526_-	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
AYW25102.1\|2835612_2835873_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
AYW25103.1\|2836170_2837031_+	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
AYW25104.1\|2837051_2837813_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AYW25105.1\|2838073_2838976_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
AYW25106.1\|2838987_2840253_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	7.8e-234	99.8
AYW25107.1\|2840245_2840866_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_7

3545342 : 3554816

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW25734.1\|3545342_3547064_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
AYW25735.1\|3547108_3547810_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AYW25736.1\|3548163_3548382_+	translation initiation factor IF-1	NA	NA	NA	NA
AYW25737.1\|3548512_3550792_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
AYW25738.1\|3550822_3551140_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
AYW25739.1\|3551465_3551687_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
AYW25740.1\|3551763_3553704_-	MacB family efflux pump subunit	G9BWD6	Planktothrix_phage	1.9e-37	40.5
AYW25741.1\|3553700_3554816_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_8

4031331 : 4076783

Cronobacter_phage(26.92%)

terminase,coat,tail,integrase,head,holin,tRNA

attL 4028285:4028330|attR 4073855:4073900

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4028285:4028330	attL	NA	NA	NA	NA
AYW26152.1\|4031331_4033809_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	2.6e-196	45.3
AYW26153.1\|4033795_4034191_-	hypothetical protein	F1C5F2	Cronobacter_phage	3.6e-36	54.8
AYW26154.1\|4034187_4034658_-	hypothetical protein	R9TPR6	Aeromonas_phage	9.6e-28	40.4
AYW27532.1\|4034657_4035077_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	5.3e-30	47.1
AYW26155.1\|4035247_4035511_+	DUF1883 domain-containing protein	NA	NA	NA	NA
AYW26156.1\|4035490_4035670_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
AYW26157.1\|4035710_4038128_-\|tail	phage tail protein	F1C5E9	Cronobacter_phage	8.3e-208	62.7
AYW26158.1\|4038172_4038646_-	hypothetical protein	NA	NA	NA	NA
AYW26159.1\|4038642_4038975_-	hypothetical protein	NA	NA	NA	NA
AYW27533.1\|4038986_4039238_-	hypothetical protein	H6WRV3	Salmonella_phage	2.8e-26	62.7
AYW26160.1\|4039410_4039941_-	KilA-N domain-containing protein	A0A1V0E5P7	Salmonella_phage	7.8e-87	92.0
AYW26161.1\|4040157_4040871_-	hypothetical protein	G0ZNE7	Cronobacter_phage	2.1e-63	54.6
AYW26162.1\|4041762_4041984_-	hypothetical protein	NA	NA	NA	NA
AYW26163.1\|4041986_4042370_-	hypothetical protein	F1C5E4	Cronobacter_phage	3.5e-28	48.0
AYW26164.1\|4042366_4042735_-	HK97 gp10 family phage protein	F1C5E3	Cronobacter_phage	2.9e-48	82.8
AYW26165.1\|4042737_4043100_-	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	1.6e-19	48.3
AYW26166.1\|4043099_4043273_-	50S ribosomal protein L13	I6R0P9	Salmonella_phage	2.4e-13	56.1
AYW26167.1\|4043272_4043653_-	hypothetical protein	F1C5E2	Cronobacter_phage	1.4e-29	56.1
AYW26168.1\|4043655_4043949_-	hypothetical protein	NA	NA	NA	NA
AYW26169.1\|4043958_4045056_-\|coat	phage coat protein	F1C5E1	Cronobacter_phage	4.2e-151	73.6
AYW26170.1\|4045067_4045499_-	hypothetical protein	F1C5E0	Cronobacter_phage	1.4e-41	60.1
AYW26171.1\|4045502_4046888_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	7.6e-166	64.0
AYW26172.1\|4046954_4047635_-	HNH endonuclease	S5M802	Pseudoalteromonas_phage	9.6e-37	38.3
AYW26173.1\|4047736_4048741_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	1.9e-113	68.7
AYW26174.1\|4048667_4050137_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	1.2e-148	56.1
AYW26175.1\|4050149_4051622_-\|terminase	terminase	A0A1W6JNY3	Morganella_phage	6.9e-250	82.9
AYW26176.1\|4051621_4052224_-	hypothetical protein	A0A077KBY7	Edwardsiella_phage	3.1e-79	78.7
AYW26177.1\|4052661_4053012_-	hypothetical protein	A0A0K2FIW3	Enterobacter_phage	7.6e-14	42.9
AYW27534.1\|4053008_4053506_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	4.8e-78	83.0
AYW26178.1\|4053483_4053753_-\|holin	holin	K7P6H9	Enterobacteria_phage	2.8e-32	78.3
AYW26179.1\|4053972_4054512_-	HNH endonuclease	A5PJ37	Escherichia_virus	2.1e-34	46.1
AYW26180.1\|4054949_4055639_-	antiterminator	I6PDF8	Cronobacter_phage	1.0e-57	54.9
AYW26181.1\|4055635_4055776_-	YlcG family protein	NA	NA	NA	NA
AYW26182.1\|4055772_4056414_-	HNH endonuclease	A0A2H4JH74	uncultured_Caudovirales_phage	8.4e-35	40.7
AYW26183.1\|4056410_4057049_-	hypothetical protein	H6WRY9	Salmonella_phage	2.8e-70	65.1
AYW26184.1\|4057041_4057212_-	hypothetical protein	G8C7V4	Escherichia_phage	5.7e-15	73.2
AYW26185.1\|4057211_4057667_-	hypothetical protein	K7P7B8	Enterobacteria_phage	1.5e-54	68.2
AYW26186.1\|4057918_4058200_-	hypothetical protein	A0A220NQY7	Salmonella_phage	1.0e-05	40.2
AYW27535.1\|4058192_4058651_-	DUF551 domain-containing protein	A0A193GYX5	Enterobacter_phage	2.5e-28	91.5
AYW26187.1\|4059117_4059306_-	diguanylate phosphodiesterase	A0A192Y8X2	Salmonella_phage	3.7e-23	88.7
AYW26188.1\|4059766_4060012_-	hypothetical protein	NA	NA	NA	NA
AYW27536.1\|4060008_4060455_-	hypothetical protein	K7P858	Enterobacteria_phage	4.1e-20	42.8
AYW26189.1\|4060457_4060751_-	protein ren	O48423	Enterobacteria_phage	2.5e-26	65.6
AYW26190.1\|4060750_4062181_-	helicase DnaB	Q9MCT4	Escherichia_phage	4.9e-184	66.3
AYW26191.1\|4062170_4063070_-	DNA replication protein	F1C5C3	Cronobacter_phage	8.4e-89	55.6
AYW26192.1\|4063294_4063516_-	transcriptional regulator	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
AYW26193.1\|4063556_4063784_-	Cro/Cl family transcriptional regulator	A0A2I6PIE5	Escherichia_phage	5.6e-18	61.2
AYW26194.1\|4063852_4064575_+	helix-turn-helix domain-containing protein	E7C9R0	Salmonella_phage	6.1e-74	62.8
AYW26195.1\|4064672_4065422_+	hypothetical protein	NA	NA	NA	NA
AYW26196.1\|4065418_4066246_+	DUF3037 domain-containing protein	NA	NA	NA	NA
AYW26197.1\|4066957_4067164_+	cell division inhibitor protein	A0A0M4S6W3	Salmonella_phage	1.4e-31	94.1
AYW26198.1\|4067245_4067530_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	3.3e-39	79.8
AYW26199.1\|4067539_4068454_+	DNA recombinase	G8C7T0	Escherichia_phage	1.0e-158	91.4
AYW26200.1\|4068450_4068933_+	siphovirus Gp157 family protein	G8C7S9	Escherichia_phage	3.1e-74	92.5
AYW26201.1\|4068967_4069273_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AYW26202.1\|4069269_4069926_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-113	87.0
AYW26203.1\|4069922_4071059_+	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	7.4e-159	73.1
AYW26204.1\|4071274_4071547_+	hypothetical protein	Q716F1	Shigella_phage	3.7e-24	63.5
AYW26205.1\|4071543_4072248_+	hypothetical protein	A0A1W6JP46	Morganella_phage	1.0e-25	34.3
AYW26206.1\|4072244_4072463_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	4.4e-12	52.2
AYW27537.1\|4072464_4072800_+	DNA-binding protein	NA	NA	NA	NA
AYW27538.1\|4072796_4073840_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	2.2e-178	85.9
AYW26207.1\|4073909_4074233_-	hypothetical protein	NA	NA	NA	NA
4073855:4073900	attR	NA	NA	NA	NA
AYW26208.1\|4074271_4075138_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
AYW26209.1\|4075139_4075352_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
AYW26210.1\|4075397_4076783_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP033628

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5122 : 54727

Escherichia_phage(36.36%)

transposase,integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW27816.1\|5122_6838_-\|integrase	integrase	NA	NA	NA	NA
AYW27817.1\|6947_9977_+\|transposase	IS3-like element Tn4401 family transposase	NA	NA	NA	NA
AYW27818.1\|10083_11109_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
AYW27819.1\|11105_11885_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
AYW27820.1\|11881_12121_+	hypothetical protein	NA	NA	NA	NA
AYW27821.1\|12172_13054_+	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
AYW27822.1\|13303_14623_-\|transposase	IS1182-like element ISKpn6 family transposase	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
AYW27823.1\|14899_16084_-\|transposase	ISAs1-like element ISKpn31 family transposase	NA	NA	NA	NA
AYW27824.1\|16587_16947_+	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	3.6e-19	62.0
AYW27825.1\|18112_18733_-	serine recombinase	A0A219Y912	Aeromonas_phage	2.0e-09	31.5
AYW27826.1\|18821_21719_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	2.7e-181	37.7
AYW27827.1\|21791_22496_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYW27828.1\|24239_25100_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
AYW27829.1\|25667_26972_-\|integrase	integrase	NA	NA	NA	NA
AYW27830.1\|27010_27718_-	EAL domain-containing protein	NA	NA	NA	NA
AYW27831.1\|27714_27951_-	mercury resistance protein	NA	NA	NA	NA
AYW27832.1\|27947_28310_-	transcriptional regulator	NA	NA	NA	NA
AYW27833.1\|28327_30022_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
AYW27915.1\|30073_30496_-	mercury transporter MerC	NA	NA	NA	NA
AYW27916.1\|30531_30657_-	mercury transporter	NA	NA	NA	NA
AYW27834.1\|31388_32099_-	AAA family ATPase	NA	NA	NA	NA
AYW27835.1\|32172_32589_-	PIN domain-containing protein	NA	NA	NA	NA
AYW27836.1\|32585_32816_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
AYW27837.1\|32799_33234_+	hypothetical protein	NA	NA	NA	NA
AYW27838.1\|33377_33728_+	hypothetical protein	NA	NA	NA	NA
AYW27839.1\|33778_34522_+	hypothetical protein	NA	NA	NA	NA
AYW27840.1\|34518_35295_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.4e-53	92.9
AYW27841.1\|35352_35610_-	hypothetical protein	NA	NA	NA	NA
AYW27842.1\|36377_37244_+	RepB family plasmid replication initiator protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
AYW27843.1\|37600_37870_-	hypothetical protein	NA	NA	NA	NA
AYW27844.1\|38284_39490_+	ParA family protein	A0A077SL49	Escherichia_phage	2.4e-163	69.6
AYW27845.1\|39486_40464_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	2.6e-88	54.4
AYW27846.1\|40545_41817_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	4.9e-151	63.3
AYW27847.1\|41816_42248_-	peptidase	A0A1W6JNS2	Morganella_phage	1.6e-29	53.3
AYW27848.1\|42405_42657_+	hypothetical protein	NA	NA	NA	NA
AYW27849.1\|42656_44141_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
AYW27850.1\|44133_44403_+	hypothetical protein	NA	NA	NA	NA
AYW27851.1\|44610_45042_+	hypothetical protein	NA	NA	NA	NA
AYW27852.1\|45074_45602_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	5.7e-21	39.5
AYW27853.1\|45861_46317_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
AYW27854.1\|46388_46754_+	mercuric ion transporter MerT	NA	NA	NA	NA
AYW27855.1\|46769_47045_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
AYW27856.1\|47072_47498_+	mercury transporter MerC	NA	NA	NA	NA
AYW27857.1\|47536_49222_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
AYW27858.1\|49239_49605_+	transcriptional regulator	NA	NA	NA	NA
AYW27859.1\|49601_49838_+	mercury resistance protein	NA	NA	NA	NA
AYW27860.1\|49948_50653_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYW27861.1\|50722_50917_-	hypothetical protein	NA	NA	NA	NA
AYW27862.1\|50917_51673_-	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	4.5e-136	96.0
AYW27863.1\|52684_52876_-	plasmid stabilization protein	NA	NA	NA	NA
AYW27864.1\|52884_53271_-	hypothetical protein	NA	NA	NA	NA
AYW27865.1\|53816_54077_+	hypothetical protein	NA	NA	NA	NA
AYW27866.1\|54022_54727_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP033626

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7709 : 22100

Salmonella_phage(20.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW27608.1\|7709_8252_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	1.3e-20	33.2
AYW27609.1\|8487_9117_-	hypothetical protein	NA	NA	NA	NA
AYW27610.1\|9287_9659_-	hypothetical protein	F1C5E3	Cronobacter_phage	9.2e-34	58.7
AYW27611.1\|9863_10148_-	hypothetical protein	NA	NA	NA	NA
AYW27612.1\|10314_13113_-\|tail	tail tape measure protein	A0A1B1W284	Salmonella_phage	7.7e-48	32.4
AYW27613.1\|13120_13447_-	hypothetical protein	NA	NA	NA	NA
AYW27614.1\|13741_14119_-	hypothetical protein	A0A0M4QWT0	Salmonella_phage	1.1e-21	44.7
AYW27615.1\|14148_14532_-	superinfection immunity protein	A0A0S2SY85	Pseudomonas_phage	2.1e-17	45.4
AYW27616.1\|14538_14811_-	PerC family transcriptional regulator	NA	NA	NA	NA
AYW27617.1\|14824_15271_-	single-stranded DNA-binding protein	A0A1J0MCT7	Streptomyces_phage	1.3e-05	37.6
AYW27618.1\|15267_15666_-	hypothetical protein	NA	NA	NA	NA
AYW27619.1\|15973_18424_-	DNA primase	Q7M2A8	Enterobacteria_phage	1.1e-138	38.0
AYW27620.1\|18416_18767_-	hypothetical protein	A0A1B5FPL8	Escherichia_phage	8.9e-39	69.1
AYW27621.1\|18776_19403_-	hypothetical protein	A0A1B5FPB4	Escherichia_phage	8.0e-22	37.6
AYW27622.1\|19399_19609_-	hypothetical protein	NA	NA	NA	NA
AYW27623.1\|19605_20109_-	hypothetical protein	NA	NA	NA	NA
AYW27632.1\|20105_20285_-	hypothetical protein	NA	NA	NA	NA
AYW27631.1\|20277_20472_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
AYW27624.1\|21118_21298_-	DUF4222 domain-containing protein	NA	NA	NA	NA
AYW27625.1\|21290_22100_-	antA/AntB antirepressor family protein	A0A0R6PJV6	Moraxella_phage	3.5e-30	54.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. CP033624

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

500 : 54773

Klebsiella_phage(85.19%)

capsid,head,transposase,portal,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW22426.1\|500_1664_+	plasmid-partitioning protein SopA	Q6UAV7	Klebsiella_phage	2.1e-225	98.4
AYW22427.1\|1666_2632_+	ParB/RepB/Spo0J family plasmid partition protein	Q6UAV8	Klebsiella_phage	1.5e-155	86.9
AYW22428.1\|2710_4210_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	1.1e-146	73.4
AYW22429.1\|4271_15017_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	55.9
AYW22430.1\|15079_15673_-\|tail	tail assembly protein	Q6UAW2	Klebsiella_phage	3.7e-85	80.7
AYW22431.1\|15689_16517_-	hypothetical protein	A0A0P0IYG9	Acinetobacter_phage	2.3e-08	44.0
AYW22432.1\|16563_17274_-	peptidase P60	Q6UAW4	Klebsiella_phage	6.7e-134	89.8
AYW22433.1\|17275_18031_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	2.7e-125	80.9
AYW22434.1\|18027_18366_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	2.4e-57	88.4
AYW22435.1\|18365_21722_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	87.0
AYW22436.1\|21721_21934_-	hypothetical protein	Q6UAW9	Klebsiella_phage	5.8e-33	90.3
AYW22437.1\|21954_22320_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	8.1e-51	88.5
AYW22438.1\|22376_22838_-\|tail	phage tail protein	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
AYW22439.1\|22869_23271_-	hypothetical protein	Q6UAX1	Klebsiella_phage	1.7e-62	94.0
AYW22440.1\|23267_23657_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
AYW22441.1\|23637_23976_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
AYW22442.1\|23972_24290_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
AYW22481.1\|24270_24468_-	hypothetical protein	Q6UAX5	Klebsiella_phage	1.8e-20	78.0
AYW22443.1\|24724_26011_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	2.4e-206	85.0
AYW22444.1\|26088_27009_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	4.8e-148	87.9
AYW22445.1\|27045_28305_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	3.6e-223	90.0
AYW22446.1\|28304_28484_-	hypothetical protein	Q6UAX9	Klebsiella_phage	2.4e-16	80.7
AYW22447.1\|28477_30187_-\|terminase	terminase large subunit	Q6UAY0	Klebsiella_phage	0.0e+00	95.1
AYW22448.1\|30508_31690_-\|transposase	transposase	A0A1I9KF42	Aeromonas_phage	1.5e-122	58.2
AYW22449.1\|31689_31917_-	hypothetical protein	NA	NA	NA	NA
AYW22450.1\|31913_32078_-	host cell division inhibitor Icd-like protein	Q7Y3Y4	Yersinia_phage	7.6e-17	81.5
AYW22451.1\|32357_32792_-\|terminase	terminase	Q6UAY1	Klebsiella_phage	2.4e-73	95.8
AYW22482.1\|33007_33208_-	hypothetical protein	Q6UAR8	Klebsiella_phage	2.9e-10	89.4
AYW22452.1\|33293_33725_-	hypothetical protein	Q6UAS0	Klebsiella_phage	2.9e-39	59.9
AYW22453.1\|33721_34006_-	hypothetical protein	Q6UAS1	Klebsiella_phage	2.4e-05	37.5
AYW22454.1\|34002_34365_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	7.8e-62	92.5
AYW22455.1\|34348_35425_-	hypothetical protein	Q6UAS3	Klebsiella_phage	9.8e-36	37.4
AYW22456.1\|35660_35894_-	DUF4406 domain-containing protein	Q6UAS4	Klebsiella_phage	2.9e-38	98.7
AYW22457.1\|36147_36624_-	hypothetical protein	Q6UAS7	Klebsiella_phage	1.7e-61	79.7
AYW22458.1\|36640_37132_-	hypothetical protein	Q6UAS8	Klebsiella_phage	1.9e-82	90.8
AYW22459.1\|37128_37440_-	hypothetical protein	Q6UAS9	Klebsiella_phage	6.3e-44	89.1
AYW22460.1\|37498_38560_-	site-specific DNA-methyltransferase	Q6UAT0	Klebsiella_phage	1.6e-171	93.2
AYW22461.1\|38830_39058_-	hypothetical protein	Q6UAT1	Klebsiella_phage	1.6e-28	84.0
AYW22483.1\|39069_39291_-	hypothetical protein	O64358	Escherichia_phage	3.0e-32	90.4
AYW22462.1\|39461_39770_+	type II toxin-antitoxin system RelE/ParE family toxin	Q6UAT3	Klebsiella_phage	3.9e-46	94.2
AYW22463.1\|39769_40057_+	XRE family transcriptional regulator	Q6UAT4	Klebsiella_phage	1.7e-43	96.8
AYW22464.1\|40146_40350_-	hypothetical protein	Q6UAT5	Klebsiella_phage	3.5e-19	76.6
AYW22465.1\|40453_40681_-	hypothetical protein	O64355	Escherichia_phage	2.8e-25	80.3
AYW22466.1\|40701_41028_-	hypothetical protein	Q6UAT7	Klebsiella_phage	3.9e-52	94.4
AYW22467.1\|41020_41266_-	hypothetical protein	G8C7U9	Escherichia_phage	5.1e-25	83.1
AYW22468.1\|41866_42475_-	3'-5' exonuclease	Q6UAU3	Klebsiella_phage	1.7e-98	88.5
AYW22469.1\|42886_43624_-	phage antitermination protein	Q6UAU4	Klebsiella_phage	2.2e-119	84.5
AYW22470.1\|43613_43823_-	hypothetical protein	Q6UAU5	Klebsiella_phage	7.7e-30	92.8
AYW22471.1\|43903_44512_+	helix-turn-helix domain-containing protein	Q6UAU6	Klebsiella_phage	2.6e-102	90.6
AYW22472.1\|44762_48737_+	origin of replication binding family protein	Q6UAU7	Klebsiella_phage	0.0e+00	95.4
AYW22473.1\|48748_48997_+	hypothetical protein	O64346	Escherichia_phage	4.4e-40	96.3
AYW22474.1\|48993_49323_+	hypothetical protein	O64345	Escherichia_phage	1.1e-43	73.4
AYW22475.1\|49422_49947_+	hypothetical protein	NA	NA	NA	NA
AYW22476.1\|49973_51107_-	hypothetical protein	NA	NA	NA	NA
AYW22477.1\|51471_51591_+	hypothetical protein	NA	NA	NA	NA
AYW22478.1\|51634_51799_+	host cell division inhibitor Icd-like protein	Q6UAV3	Klebsiella_phage	1.1e-18	92.6
AYW22479.1\|51795_52026_+	hypothetical protein	NA	NA	NA	NA
AYW22480.1\|52022_52823_+	hypothetical protein	Q6UAV5	Klebsiella_phage	8.1e-128	87.2
AYW22484.1\|52877_54773_-	protelomerase	Q6UAV6	Klebsiella_phage	0.0e+00	94.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. CP033627

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1727 : 67645

uncultured_Caudovirales_phage(27.78%)

integrase,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW27635.1\|1727_2468_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
AYW27636.1\|3611_4559_+	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	1.8e-12	30.6
AYW27637.1\|4585_4897_-	EAL domain-containing protein	NA	NA	NA	NA
AYW27638.1\|4961_5885_+\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.1e-175	98.4
AYW27639.1\|6557_6815_-	hypothetical protein	NA	NA	NA	NA
AYW27640.1\|7434_8871_+	EAL domain-containing protein	NA	NA	NA	NA
AYW27641.1\|9853_11131_-	DUF2254 domain-containing protein	NA	NA	NA	NA
AYW27796.1\|11193_13191_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9
AYW27642.1\|15529_15961_-	silver-binding protein SilE	NA	NA	NA	NA
AYW27643.1\|16211_17687_-	Cu(+)/Ag(+) sensor histidine kinase	W8CYF6	Bacillus_phage	1.0e-27	30.1
AYW27644.1\|17679_18360_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.1e-31	35.6
AYW27645.1\|18549_19935_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
AYW27646.1\|19963_20317_+	copper ABC transporter substrate-binding protein	NA	NA	NA	NA
AYW27647.1\|20430_21723_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AYW27648.1\|21733_24880_+	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	4.0e-61	22.5
AYW27649.1\|24966_25407_+	hypothetical protein	NA	NA	NA	NA
AYW27650.1\|25533_27981_+	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	7.6e-84	35.8
AYW27651.1\|28021_28219_+	DUF2933 domain-containing protein	NA	NA	NA	NA
AYW27652.1\|28252_28990_-	peptidase M23	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
AYW27653.1\|29278_29728_-	copper resistance protein	NA	NA	NA	NA
AYW27654.1\|29961_31779_+	multicopper oxidase PcoA	NA	NA	NA	NA
AYW27655.1\|31778_32675_+	copper resistance protein B	NA	NA	NA	NA
AYW27656.1\|32714_33095_+	copper resistance system chaperone PcoC	NA	NA	NA	NA
AYW27657.1\|33099_34029_+	copper resistance protein D	NA	NA	NA	NA
AYW27658.1\|34083_34764_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	8.7e-30	34.4
AYW27659.1\|34760_36161_+	sensor histidine kinase	W8CYF6	Bacillus_phage	4.1e-18	26.3
AYW27660.1\|36377_36812_+	copper-binding protein	NA	NA	NA	NA
AYW27797.1\|37043_37223_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AYW27661.1\|38965_39475_+	porin	NA	NA	NA	NA
AYW27662.1\|39524_40022_-	N-acetyltransferase	NA	NA	NA	NA
AYW27663.1\|40353_40680_+	transcriptional regulator	NA	NA	NA	NA
AYW27798.1\|40679_41390_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-92	77.0
AYW27664.1\|41398_41944_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
AYW27665.1\|42019_42382_+	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA
AYW27666.1\|44278_44815_+	N-acetyltransferase	NA	NA	NA	NA
AYW27667.1\|44847_45273_-	arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	72.9
AYW27668.1\|45285_46575_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-171	74.0
AYW27669.1\|46622_48374_-	arsenical pump-driving ATPase	NA	NA	NA	NA
AYW27670.1\|48391_48754_-	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA
AYW27671.1\|48803_49154_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-23	50.9
AYW27672.1\|49511_49781_+	hypothetical protein	NA	NA	NA	NA
AYW27673.1\|49768_50344_+	hypothetical protein	NA	NA	NA	NA
AYW27674.1\|50374_50869_+	DNA-binding protein	NA	NA	NA	NA
AYW27675.1\|50912_51281_+	hypothetical protein	NA	NA	NA	NA
AYW27676.1\|51314_51518_+	hemolysin expression modulator Hha	NA	NA	NA	NA
AYW27677.1\|51566_51824_+	hypothetical protein	NA	NA	NA	NA
AYW27678.1\|51899_52154_+	hypothetical protein	NA	NA	NA	NA
AYW27679.1\|52329_52596_+	DUF1778 domain-containing protein	NA	NA	NA	NA
AYW27680.1\|52583_53066_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AYW27681.1\|53266_54670_+\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
AYW27682.1\|54698_55331_-	hypothetical protein	NA	NA	NA	NA
AYW27799.1\|55560_56907_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
AYW27683.1\|58749_59712_-\|protease	Zn-dependent protease	NA	NA	NA	NA
AYW27684.1\|59698_60448_-	diguanylate cyclase	NA	NA	NA	NA
AYW27685.1\|60685_60883_-	hypothetical protein	NA	NA	NA	NA
AYW27686.1\|60882_63678_-	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	5.2e-129	41.0
AYW27687.1\|63792_64362_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
AYW27800.1\|64396_64678_-	DNA-binding protein	A0A1B1IUF9	uncultured_Mediterranean_phage	5.2e-05	38.2
AYW27688.1\|66664_67645_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1

DBSCAN-SWA_2

159172 : 169816

Escherichia_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW27764.1\|159172_159994_-	DUF945 domain-containing protein	K4F5L3	Cronobacter_phage	2.6e-44	40.4
AYW27765.1\|160091_160310_+	hypothetical protein	NA	NA	NA	NA
AYW27766.1\|160827_161241_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AYW27767.1\|161241_161520_-	XRE family transcriptional regulator	O64356	Escherichia_phage	2.5e-07	39.4
AYW27768.1\|161509_161830_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	6.8e-09	39.5
AYW27769.1\|161910_162135_-	hypothetical protein	NA	NA	NA	NA
AYW27770.1\|162145_162358_-	hypothetical protein	NA	NA	NA	NA
AYW27771.1\|162418_162775_-	hypothetical protein	A0A248SL90	Klebsiella_phage	2.6e-25	58.1
AYW27772.1\|162879_163098_+	hypothetical protein	NA	NA	NA	NA
AYW27773.1\|163410_163761_-	hypothetical protein	NA	NA	NA	NA
AYW27774.1\|163757_164030_-	hypothetical protein	NA	NA	NA	NA
AYW27775.1\|164640_165345_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AYW27776.1\|165356_165737_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.2e-62	99.1
AYW27777.1\|166699_167404_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	2.6e-138	99.6
AYW27778.1\|167514_167751_-	mercury resistance protein	NA	NA	NA	NA
AYW27779.1\|167747_168113_-	transcriptional regulator	NA	NA	NA	NA
AYW27780.1\|168130_169816_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage