CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033682	Raoultella ornithinolytica strain YDC775_2 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0
CP033683	Raoultella ornithinolytica strain YDC775_2 chromosome, complete genome	3 crisprs	DEDDh,WYL,DinG,cas3,csa3	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP033683_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033683_1

553614-553837

Orphan

Consensus_repeat	Method
GCGTAGCCCGGGCCAGGGGTTTATCCCGCTGTCCGGGAACCTCCCCGCTGGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033683_1

>merge|CP033683|1|553614-553837|CRISPRCasFinder
GCGTAGCCCGGGCCAGGGGTTTATCCCGCTGTCCGGGAACCTCCCCGCTGGCGCGACGCTTACCGGGGCTACGGTGGGGGCCGACGCGTAGCCCGGGCCAGGGGTTTATCCCGCTGTCCGGGAACCTCCCCGCTGGCGCTGTGTTTACCGGGGCTACGGTAGGTGTCGGTACGTAGCCCGGGCCAGGGGTTTATCCCGCTGCCCGGGAACCTCCCCGCTGGCGC

>CP033683|1|1|553614-553837|CRISPRCasFinder
GCGTAGCCCGGGCCAGGGGTTTATCCCGCTGTCCGGGAACCTCCCCGCTGGCGC	GACGCTTACCGGGGCTACGGTGGGGGCCGACGCGTAGCCCGGGCCAGGGGTTTATCCCGCTGTCCGGGAACCTCCCCGCTGGCGCTGTGTTTACCGGGGCTACGGTAGGTGTCGGT
ACGTAGCCCGGGCCAGGGGTTTATCCCGCTGCCCGGGAACCTCCCCGCTGGCGC

Protein	Signature genes	Signature genes Name	Protein_function
CP033683.1\|AYW53127.1\|554983_556951_+\|YjhG/YagF-family-D-xylonate-dehydratase	unknown	unknown	gnl\|CDD\|236189
CP033683.1\|AYW53122.1\|548541_550482_+\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	unknown	unknown	gnl\|CDD\|275170
CP033683.1\|AYW53131.1\|563784_564609_-\|phosphodiesterase	unknown	unknown	gnl\|CDD\|277347
CP033683.1\|AYW53118.1\|542409_543915_+\|methylmalonate-semialdehyde-dehydrogenase-(CoA-acylating)	unknown	unknown	gnl\|CDD\|143404
CP033683.1\|AYW53120.1\|545088_545949_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
CP033683.1\|AYW53135.1\|567880_568099_+\|hypothetical-protein	unknown	unknown	unknown
CP033683.1\|AYW53124.1\|551585_552470_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
CP033683.1\|AYW53129.1\|560325_561084_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
CP033683.1\|AYW53132.1\|564619_565507_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
CP033683.1\|AYW53117.1\|541235_542057_-\|inosose-isomerase	unknown	unknown	gnl\|CDD\|226615
CP033683.1\|AYW53119.1\|543933_544743_+\|5-deoxy-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|226241
CP033683.1\|AYW53133.1\|565496_566369_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
CP033683.1\|AYW53128.1\|557310_558690_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|236610
CP033683.1\|AYW53121.1\|546099_548013_-\|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl\|CDD\|378281
CP033683.1\|AYW53134.1\|566525_567545_-\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
CP033683.1\|AYW53126.1\|554060_554969_+\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|223406
CP033683.1\|AYW53125.1\|552493_553393_+\|myo-inosose-2-dehydratase	unknown	unknown	gnl\|CDD\|275172
CP033683.1\|AYW53123.1\|550529_551543_+\|gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
CP033683.1\|AYW53116.1\|539634_541137_-\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
CP033683.1\|AYW53130.1\|562705_563779_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359

Protein	Function_ID	Function_description	E-value
CP033683.1\|AYW53127.1\|554983_556951_+\|YjhG/YagF-family-D-xylonate-dehydratase	gnl\|CDD\|236189	PRK08211, PRK08211, YjhG/YagF family D-xylonate dehydratase.	0
CP033683.1\|AYW53122.1\|548541_550482_+\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	gnl\|CDD\|275170	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase. Members of this protein family, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase (iolD), represent one of eight enzymes in a pathway converting myo-inositol to acetyl-CoA. IolD hydrolyzes the cyclic molecule 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione to yield 5-deoxy-D-glucuronic acid. TPP is a cofactor. [Energy metabolism, Sugars].	0
CP033683.1\|AYW53131.1\|563784_564609_-\|phosphodiesterase	gnl\|CDD\|277347	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	7.07116e-89
CP033683.1\|AYW53118.1\|542409_543915_+\|methylmalonate-semialdehyde-dehydrogenase-(CoA-acylating)	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
CP033683.1\|AYW53120.1\|545088_545949_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.96963e-78
CP033683.1\|AYW53124.1\|551585_552470_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	1.00858e-41
CP033683.1\|AYW53129.1\|560325_561084_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	2.4381e-89
CP033683.1\|AYW53132.1\|564619_565507_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	5.67643e-67
CP033683.1\|AYW53117.1\|541235_542057_-\|inosose-isomerase	gnl\|CDD\|226615	COG4130, COG4130, Predicted sugar epimerase [Carbohydrate transport and metabolism].	2.02199e-95
CP033683.1\|AYW53119.1\|543933_544743_+\|5-deoxy-glucuronate-isomerase	gnl\|CDD\|226241	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism].	2.78369e-155
CP033683.1\|AYW53133.1\|565496_566369_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	5.21914e-77
CP033683.1\|AYW53128.1\|557310_558690_+\|MFS-transporter	gnl\|CDD\|236610	PRK09669, PRK09669, putative symporter YagG; Provisional.	0
CP033683.1\|AYW53121.1\|546099_548013_-\|5-dehydro-2-deoxygluconokinase	gnl\|CDD\|378281	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090). This domain, found in various prokaryotic carbohydrate kinases, has no known function.	0
CP033683.1\|AYW53134.1\|566525_567545_-\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	3.24748e-167
CP033683.1\|AYW53126.1\|554060_554969_+\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|223406	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane].	6.24636e-107
CP033683.1\|AYW53125.1\|552493_553393_+\|myo-inosose-2-dehydratase	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	2.0103e-155
CP033683.1\|AYW53123.1\|550529_551543_+\|gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	3.22629e-60
CP033683.1\|AYW53116.1\|539634_541137_-\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
CP033683.1\|AYW53130.1\|562705_563779_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	4.80805e-156

>CP033683.1|AYW53125.1|552493_553393_+|myo-inosose-2-dehydratase
MNKDNVKLAIAPIGWTNDDMPELGSENTFQQIVSEMALAGFSGSEVGSKYPRDPAVLKPMLDIRGIQICNAWFSTFFANGQREKTIDEFVNHMNFLQAMGAKVIGCSEQSGSIQGLEKPILGEAKPCFSEEEWQRVAEGYNTLGRLAAEKGMQVCLHHHMGTGIQTTEEIDKFMSLVDDKVFLLYDTGHAWYSEGGEAPMLAILEKYLPRINHVHLKDVRPSVIEQVRREGLSFLDGVKKGTFTVPGDGVIDFRPVFKLLDDRGYKGWMVVEAEQDPALANPFEYALKARKYIRETAGI
>CP033683.1|AYW53124.1|551585_552470_+|sugar-phosphate-isomerase/epimerase
MKIAFDVDVIRDLGITRMVHQVAEWGYKYIEQSPHPQINPFYKHPRAGREVIAEYKQALRETGVEISSFICVYRWSGPDELRRQAAVKNWKRLIEVAVEMGVQVINTEFSGDPNQPEICEEMFYRSMDELLPIFEREGIRVEIQAHPWDFCEEHNETVDIVKSFRSENVKYVYSVPHTFFYDKGKGEVEKMLRYAGGDLSHVLIADTRNHTKHCRYIVNPPGVDAAVHQHVGVGEGDVDFDALFRTLREMNFAEQTFKVGGAPIVAASLFGYPEKMKYQAVETRELIERELLRR
>CP033683.1|AYW53123.1|550529_551543_+|gfo/Idh/MocA-family-oxidoreductase
MSLKLGVIGAGAIGKEHIRRCTQVLQGATVVAVSDINAESARAAVALPGVQAEIYTDGHDVIRSGDVDAILVTSWDPTHEEYTLAAIAAGKPVFCEKPLAMSAEGCRRIVDAEMKAGRRLVQVGFMRPYDEGYLALKKVIDDGDIGAPLMLHCAHRNQSVGENYTTDMAITNTLIHELDVLRWLLNDDYRSVQVRFPRSTSHTHPRLRDPQIVSFETRKGTLIDVEVFVNCQYGYDIQCEVVGETGIARLPEPSAIQMRKSANLSTAILTDWKDRFIKAYDVELQAFINDVKAGQLQGPSAWDGYAASVAADACLQAQESSEPVAVTLPECPAFYQR
>CP033683.1|AYW53122.1|548541_550482_+|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)
MGKLRLTMAQALVKFLDNQFLDVDGEEHKFVKGIFAIFGHGNVLGLGQALEQDSGDMRVFQGRNEQGMAHVATGFARQSLRRQIIACTSSVGPGAANMITAAATATANRIPLLLLPGDVFATRQPDPVLQQVEQSYDLSISTNDAFRAVSKYWDRITRPEQLMSACINAMRVLTDPAETGAVTLCLPQDVQGEAWDYPESFFVRRVHRLDRRPASAAQLADAVAAIKASRKPLIICGGGVKYAGAGEALSRFAERYGIPFAETQAGKGTVVSSHPLNVGGVGETGCLAANLLAKEADLVIGIGTRFSDFTTSSKWLFQHPGVRFLNVNVSNFDAWKLDGIPLLADAREALTSLDSALAGEGWQASWGAQIDSVQSRQLKETQRVYQAVWQEKAFVPEVDDALDRESVYREFRQITDSTLTQSSVLGVLNETLPADAVIVAAAGSLPGDLQRVWRNRAPNTYHVEYGYSCMGYEVNAALGVKLAQPQTEVYSLVGDGSFMMLHSELVTSLQERAKINVVLLDNMANGCINNLQIGHGMGSFGTEFRYRSAENGQLQGGLVPVDFATIAAGYGCKTWRVTTLNELRQALDAARRETISTLIDIKVLPKTMVHSYGSWWNVGVAQTALSERIRKVAEMINEKRAEARDY
>CP033683.1|AYW53121.1|546099_548013_-|5-dehydro-2-deoxygluconokinase
MNAAVKRLDVICIGRVAVDLYAQQIGARLEDVASFSKYLGGSSGNVAFGTAIQGLKSAMLARVGDEHNGRFLRETLARAGVDTEYLITDKQRLTALVMLGIKDQETFPLIFYRDNCADMALVPEDINEEYIASSRALAVTGTHLSHASTRAAVLKALEYARRHGLRTALDIDYRPVLWGLTSLGDGETRFIESGPVTSQLQEVLHLFDLVVGTEEEFHIAGGSTDTLTALKNVRHATKATLVCKRGPMGCVVLEGDIPDSWDSIPLQQGVRVDVLNVLGAGDAFMSGLLRGWLNDEGWEQACRYANACGALVVSRHGCAPAMPTKVELDDYLLRAESVPRPDIDARLNHLHRVTSRRQQWPELCIFAFDHRKQLADLAHETGCDPASIPQLKLLLLAAAEAAAKEAGLEQRSGILADGTYGQSSLNAITGKGWWIGRPIELPGSRPLRLEHGNIGSQLIDWPLEHVVKCLVFYHPADPAPLRAEQDALLLEVWQACNKSGHELLLEVILPENGPDKDERHYHTMLEHFYQLGIQPDWWKLPPLSSASWEKIAGLIAREDPWCRGILLLGLDAPSDRLRAGFAEAAGHPIIKGFAVGRTIFGQPSRRWMAGELSDEALIGEVKQNYLRLIDYWREARG
>CP033683.1|AYW53120.1|545088_545949_-|MurR/RpiR-family-transcriptional-regulator
MANNPTQLTILQDEIRRRYDTLSKRLKQVARYILDNSNSVAFDTVASIAQQADVPPSTLIRFANAFGFSGFNEMKQMFRQHLMEETANYTERARLFRQTTNDETSPPETPTEILNMFTMVNTQALQQLAMQTSGDDLERAVGLLAEAENIYVIGLRRSFSVASYLTYALRHLDRKAFLIDGLGGMFTEQLSLVGPKDVVVAVSFSPYAREVVELVELGAQRKARQIAITDSQVSPLAAFSDVCFVVREAQVDGFRSQVASLCLAQTLAVSLALNSSKEPQTQQNLA
>CP033683.1|AYW53119.1|543933_544743_+|5-deoxy-glucuronate-isomerase
MSLLAKSRKEGQIQHITPQSAGWRYIGFDVWMLKKGQSITLESGERELCLVLVAGLASVKTTKADFPGLGQRMSPFERTPPWAVYVPTQDKVEVTADSDLELAVCSAPGKGTLPARVIRPQDVGVEHRGKGRNQRLVHNILPDNAQADCLLVVEVYTDEGATSSWPSHKHDTAQPGKETQLEETYYHRFDPPQGFALQRVYTDDRSLDACMAPYNHDVVMVPRGYHPVATIAGYDSYYLNVMAGPERKWLFTWEEDHAWINSPDYPRHD
>CP033683.1|AYW53118.1|542409_543915_+|methylmalonate-semialdehyde-dehydrogenase-(CoA-acylating)
MTITGNFIGGKTVTSSSNETMPVYDPATGKVVREVTLSTAQEVSDAIQVARDAFESWSRTTPLRRARVLFNFKMLLEQHAEELAGIIVSEHGKVWSDALGELTRGLEVVEFACGIPHLIKGEYSSDVGTGVDSYSLMQPLGVVAGITPFNFPAMVPMWMFPLALACGNSFVLKPPALAPTAAVRLAELLKEAGLPDGVFNVVHCSNDDAEQLYTDPRIAAVSFVGSSGVAEYIYKTASAHGKRVQAFGAAKNHAIVMPDADLDATVNAIMGGAFGSAGERCMALPVVVAVGDETADKLIARLKPLVEALKVGPGCMRGKEENEMGPVVSDTHQKKVLGYIDKGASEGAKLVVDGRKLRVSGYDDGYYVGGTLFDNVTPDMTIWREEIFGPVLGIVRVADYHSALELVNSHEFGNGSAVFTSNGHTAREFVHDVQAGMVGVNVPVPVPMAFHSFGGWKRSVFGALNVHGPDGVRFYTRMKTATVRWPQGQQTVSEFSMPTLG
>CP033683.1|AYW53117.1|541235_542057_-|inosose-isomerase
MAIALQRFCLNRKIAPSLSIEAFFRLVNSLGLNKVELRNDLPTGKVTDDLSHQQVRELADRYHIEILTINAVYPFNRRTEQVRGLAESLLQEARAIGAKSLVLCPLNDGSEVPASETLSALRDLSPLFSFYGVRGLVEPLGFPQSSLRSAAQAQTLIRDAKVPFKLLIDTFHHHLYPQADAEFSQVDIADIGLVHLSGVEDARPRENLTDDERIMLTEKDRLQTCEQIKHLEARGYQGVYAFEPFAPELASWSEEDIRRETERSIALIQRHCA
>CP033683.1|AYW53116.1|539634_541137_-|DUF853-domain-containing-protein
MSAPLLIARTREKQLHLLPGMANRHGLITGATGTGKTVTLQKLAESFSEIGVPVFMADVKGDLTGIAAAGQNSEKLQARLEKIGVTDWQPHANPVVTWDIFGEKGHPVRATVSDLGPLLLSRLLNLNEVQSGVLNIIFRIADDRGLLLLDFKDLRAITRYIGDNAKAFQNQYGNISSASVGAIQRGLLTLEQQGAEHFFGEPMLDIQDWMRLDENGKGVINILSAEKLYQMPKLYAASLLWMLSELYERLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKAVGVYFVSQNPSDIPDAVLGQLGNRVQHALRAFTPKDQKAVKTAAQTMRANPAFSTEQAIQELGTGEALISFLDEKGSPSVVERAMVIAPCSRMGPVTDDERNGLINHSPLYGKYEDEVDRESAFEKLQQGVQATAEQQNAPPAKGATADLDDGILGGLKDILFGTTGPRGGKRDGLVQTAAKSATRQITNQIVRGMLGSLLGGRRR
>CP033683.1|AYW53126.1|554060_554969_+|dihydrodipicolinate-synthase-family-protein
MPQTVQFSGIIPPVSTIFTADGQFDKPGTAALIDDMIAAGVDGLFFLGSGGEFSQLNADERKAIAAFAIAHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEPNLIRYFQQVAESVTLPVLLYNFPALSGQDLTPALVKTLADSRSNIVGIKDTIDSVAHLRSMIETVKSAHPHFSVLCGYDDHLFNTLLLGGDGAISASGNFAPQISVKLLQAFRDGNLAEAARYHQTLLQIPQLYQLDTPFVNVIKEAIVLCGRPISTHVLPPSSPLDEAKKRQLKTLLQQLRLC
>CP033683.1|AYW53127.1|554983_556951_+|YjhG/YagF-family-D-xylonate-dehydratase
MAIETIFTPQNDAFYAVITHAAGPQGALPLTPQMLMESPSGNLFGMTQNAGMGWDANKLTGKEVLIIGTQGGIRAGDGRPVALGYHTGHWEIGLQMQAAAREITRNGGIPFAAFVSDPCDGRSQGTHGMFDSLPYRNDAAIVFRRLIRSLPTRRAVIGVATCDKGLPATMIALAAMHDLPTILVPGGATLPPTFGEDAGKVQTIGARYANHELSLQEAAELGCRACASPGGGCQFLGTAGTSQVVAEALGLALPHSALAPSGQDVWLEISRQSARAVSELDNRGITTRDILTDKAIENAMVIHAAFGGSTNLLLHIPAIAHAAGCTIPDVAHWTRINRSVPRLVSVLPNGPDYHPTVRAFLAGGVPEVMLHLRDLGLLHLDAMTVTGQTVGENLDWWQTSERREKFRQCLREQDGVDPDDVILPPARAKAKGLTSTVAFPVGNIAPEGSVIKATAIDPSVVDDDGVYRHTGRARVFVSEARAIKAIKNGEIEQGDIMVVIGGGPSGTGMEETYQLTSALKHVSWGKTVSLITDARFSGVSTGACFGHVAPEALAGGPIGKLRDDDVIEIVVDRLALTGHVNFIGTAHQRLTPEEGAAELAARTPHPDLHAHDFLPDDTRLWAALQSVSGGTWKGCIYDTDKIIEVINAGKKALGI
>CP033683.1|AYW53128.1|557310_558690_+|MFS-transporter
MQLTMKDKIGYGLGDTACGFVWQATMFLLAYFYTDVFGLSAGIMGTLFLVSRVLDAVTDPLMGLLVDRTRTRYGQFRPFLLWGAIPFGIVCMLTFYTPDFSAQGKIIYACVTYILLTLVYTFVNVPYCAMPGVITADPKERHALQSWRFFLAAAGSLAISGIALPLVSIIGKGNEQVGYFGAMCVLGLTGVVLLYVCFFTTRERYTFDVQPGASVAKDLKLLFGNTQWRIMCAFKMMATCSNVVRGGATLYFVKYVMDHPELAMQFLLYGSIATMFGSLASSRLLGRFDRVKAFKGIIVVYSLISLLIFVTPADYIALIFALNIVFLFVFNTTTPLQWLMASDVVDYEESRSGRRLDGLVFSTYLFSLKIGLAIGGAVVGWILAYVNYSASSSVQPVEVLTTIKILFCVVPVVLYIGMFTMLSLYKLTDARVEAISQQLRQHRAAQEEGVPAAAAATSH
>CP033683.1|AYW53129.1|560325_561084_-|IclR-family-transcriptional-regulator
MPIIQSVERALTILDLFNEQATELKITDISKQMGLSKSTLHSLLKTLQLHGYIDQNPENDKYRLGMKLVERGHFVVGTMDIRQKAKSWLTDLSQRTGQTTHLGILDGHEGVYIEKIEGRLAAIAYSRIGRRLPIHATAIGKVLIAWLSEAEQNTLLEGYQYTPFTPATLTSREALLAALAQTRAQGYAQDSEENEQGVRCVAVPVWNHESRVIAALSLSTLTSRVDEAELARYRALLEEAGRQLSKALGYPA
>CP033683.1|AYW53130.1|562705_563779_-|ABC-transporter-ATP-binding-protein
MLSLQNISKRFDGKPALDALSLDIHEGEFVVLVGPSGCGKSTLLRLLAGLEPVSEGEIWLHDQNITTLSPRERNFAMIFQNYALFPHLSVQDNITFGMKVRKEDKASWQPRVDKVAQMLQLETLLDRKPAKLSGGQRQRVAMARAIVRNPRLFLMDEPLSNLDARLRSEVRDSIMDLHQQLKTSTVYVTHDQTEAMSMADRIVVMNGGHVQQVGRPEYLYAHPANLFVAGFIGSPAMNLLSLPCADGEVQLGDLRHPLPPHYRDESRVWFGIRPEHISDRVEEGHLRLCATVLQRELMGADYLLHVSTPIGTLRFSRRHRGAVSEKGDTLILGFSPADIHLFHAEQQHNLLQEIDHA
>CP033683.1|AYW53131.1|563784_564609_-|phosphodiesterase
MLLAQISDTHFRSRGQKLYGFIDVNAANADVVSQLNALQERPDAVVVSGDIVNCGRPQEYEVARQILGSLNYPLYLIPGNHDDKALFLEYLHPLCPQLGSDPQNMHYAVDDFATHLLFIDSSRAGTSSGWLTDETIKWLEAQLFDGGDKPATVFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTLTQYRQAIISTIPGTVHQVPYFHEDRRPYYDLSPASCLMHRQVGEQWVSYQHPLTHHAGPWLYDENISCPTEER
>CP033683.1|AYW53132.1|564619_565507_-|carbohydrate-ABC-transporter-permease
MSAEASPLVVRSPVASLPLWLRLRRSQPFTLSVLMCCLALLWVSPFIWMLATAFSATTFGEDMASLLPRLPLTLDNFRDAWASADWLSLYANTLIFTFGTFFVQLLTITTAGYVFACHQFRGKQTLFLLFLVQLMIMPVVMMVPNMLTLKTFGLLNTLTGVMMPYFTSAFGVFLMRQAFLAIPKELEEAALMEGCRWWQVLFRVLLPMSWPSVLAFATVSITYHWNEYLWPLMMLNDPDKQVLTVGLVSFAMGAESGGQWGTIGAGTLMVCLPLMLAFILFQKQFLRSFGFSGIK
>CP033683.1|AYW53133.1|565496_566369_-|sugar-ABC-transporter-permease
MRKTWLPWLILSPSLLFLLLFTWFPLGRSVYDSLFDTRMASDNAPFVGLDNFVRLFADNVFWQSLLNNLLYILLTVVPGVTLALLLAVALSENHRVNRWLRTAFFFPMIIPMVSAAALWLFIFMPGLGLLDHYLAKLFGPMNNNWLGRSNSALLALALIGVWKFAGYYMLFFLAGLQSIPASTREAAIMEGATRSQVFFKVTLPLLRPTLSFVITTALIYSITQIDHVAVMTRGGPDNATTVLLYYIQNLAWDTHDLGKASAATFLTLAGLFAFSLLNLKLLEKGAHYER
>CP033683.1|AYW53134.1|566525_567545_-|NAD(P)-dependent-alcohol-dehydrogenase
MSTIKSYAAKEAGADLSLWEYDAGELLPQDVEVQVEYCGICHSDLSMIDNEWGMSSYPLVAGHEVIGRVAALGSAAQDKGLKVGQKVGIGWTARSCGHCDACISGNQINCLEGSVPTIINRGGFADKLRADWQWVIPLPESIDIESAGPMLCGGITVFKPLLMHHVTATSRVGVIGIGGLGHIAIKLLRAMGAEVTAFSSSPAKEQEVLAMGADRVVNSRDPEALKALAGQFDLIINTVAVDLEWQPYFEALAYGGNFHTVGAVMKPLQVPAFTLIGGDRSISGSATGNPSELRKLMKFAGRSKVAPTTELFPMSQINEALKHVREGKARYRVVLKADF
>CP033683.1|AYW53135.1|567880_568099_+|hypothetical-protein
MRAGSSPAFGTIGTSIDVNGRLFLCLKSSIRKAFLAFSLNLSQPDSIYINLLMRVQLRVYPGSIMFVPTQNP

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Crispr_ID: CP033683_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033683_2

750995-751084

Orphan

Consensus_repeat	Method
GAATCTGTAGGCCGGATAGGGCGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033683_2

>merge|CP033683|2|750995-751084|CRISPRCasFinder
GAATCTGTAGGCCGGATAGGGCGTAACCGCTATTCTCGTGCTTACCGGGCCAACAAAATGGTGCCGAATCTGTAGGCCGGATAAGGCGTA

>CP033683|2|2|750995-751084|CRISPRCasFinder
GAATCTGTAGGCCGGATAGGGCGTA	ACCGCTATTCTCGTGCTTACCGGGCCAACAAAATGGTGCC
GAATCTGTAGGCCGGATAAGGCGTA

Protein	Signature genes	Signature genes Name	Protein_function
CP033683.1\|AYW53278.1\|743850_744012_+\|DUF1328-domain-containing-protein	unknown	unknown	gnl\|CDD\|227774
CP033683.1\|AYW53282.1\|747515_748838_+\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|180276
CP033683.1\|AYW53284.1\|750217_750937_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP033683.1\|AYW53287.1\|752877_753849_+\|phosphoserine-phosphatase	unknown	unknown	gnl\|CDD\|182988
CP033683.1\|AYW53288.1\|753859_755242_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|273067
CP033683.1\|AYW53286.1\|752138_752774_-\|YtjB-family-periplasmic-protein	unknown	unknown	gnl\|CDD\|236885
CP033683.1\|AYW53289.1\|755387_756620_+\|multifunctional-transcriptional-regulator/nicotinamide-nucleotide-adenylyltransferase/ribosylnicotinamide-kinase-NadR	unknown	unknown	gnl\|CDD\|236151
CP033683.1\|AYW53277.1\|742984_743596_+\|molecular-chaperone-OsmY	unknown	unknown	gnl\|CDD\|182556
CP033683.1\|AYW53291.1\|758589_760527_+\|murein-transglycosylase	unknown	unknown	gnl\|CDD\|183236
CP033683.1\|AYW53275.1\|740407_741085_+\|dUMP-phosphatase	unknown	unknown	gnl\|CDD\|181865
CP033683.1\|AYW53283.1\|748890_750114_+\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
CP033683.1\|AYW53281.1\|746579_747359_+\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|235387
CP033683.1\|AYW53292.1\|760680_761007_+\|trp-operon-repressor	unknown	unknown	gnl\|CDD\|179289
CP033683.1\|AYW53279.1\|744261_745335_+\|patatin-family-protein	unknown	unknown	gnl\|CDD\|227013
CP033683.1\|AYW53293.1\|760993_761509_-\|non-canonical-purine-NTP-phosphatase	unknown	unknown	gnl\|CDD\|235336
CP033683.1\|AYW53280.1\|745331_746111_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|171118
CP033683.1\|AYW53276.1\|741176_742766_+\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
CP033683.1\|AYW53285.1\|751104_752121_-\|lipoate--protein-ligase-LplA	unknown	unknown	gnl\|CDD\|179655
CP033683.1\|AYW53294.1\|761622_762270_+\|phosphoglycerate-mutase-GpmB	unknown	unknown	gnl\|CDD\|179583
CP033683.1\|AYW53290.1\|756688_758356_-\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992

Protein	Function_ID	Function_description	E-value
CP033683.1\|AYW53278.1\|743850_744012_+\|DUF1328-domain-containing-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	3.51253e-08
CP033683.1\|AYW53282.1\|747515_748838_+\|thymidine-phosphorylase	gnl\|CDD\|180276	PRK05820, deoA, thymidine phosphorylase; Reviewed.	0
CP033683.1\|AYW53284.1\|750217_750937_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	4.98814e-173
CP033683.1\|AYW53287.1\|752877_753849_+\|phosphoserine-phosphatase	gnl\|CDD\|182988	PRK11133, serB, phosphoserine phosphatase; Provisional.	0
CP033683.1\|AYW53288.1\|753859_755242_+\|DNA-repair-protein-RadA	gnl\|CDD\|273067	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus (SP:P45266) and in Listeria monocytogenes (SP:Q48761) . for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). [DNA metabolism, DNA replication, recombination, and repair].	0
CP033683.1\|AYW53286.1\|752138_752774_-\|YtjB-family-periplasmic-protein	gnl\|CDD\|236885	PRK11246, PRK11246, YtjB family periplasmic protein.	3.51264e-143
CP033683.1\|AYW53289.1\|755387_756620_+\|multifunctional-transcriptional-regulator/nicotinamide-nucleotide-adenylyltransferase/ribosylnicotinamide-kinase-NadR	gnl\|CDD\|236151	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR.	0
CP033683.1\|AYW53277.1\|742984_743596_+\|molecular-chaperone-OsmY	gnl\|CDD\|182556	PRK10568, PRK10568, molecular chaperone OsmY.	1.26747e-79
CP033683.1\|AYW53291.1\|758589_760527_+\|murein-transglycosylase	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	0
CP033683.1\|AYW53275.1\|740407_741085_+\|dUMP-phosphatase	gnl\|CDD\|181865	PRK09449, PRK09449, dUMP phosphatase; Provisional.	2.95107e-172
CP033683.1\|AYW53283.1\|748890_750114_+\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
CP033683.1\|AYW53281.1\|746579_747359_+\|deoxyribose-phosphate-aldolase	gnl\|CDD\|235387	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional.	0
CP033683.1\|AYW53292.1\|760680_761007_+\|trp-operon-repressor	gnl\|CDD\|179289	PRK01381, PRK01381, trp operon repressor.	2.72792e-51
CP033683.1\|AYW53279.1\|744261_745335_+\|patatin-family-protein	gnl\|CDD\|227013	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only].	1.79864e-146
CP033683.1\|AYW53293.1\|760993_761509_-\|non-canonical-purine-NTP-phosphatase	gnl\|CDD\|235336	PRK05074, PRK05074, non-canonical purine NTP phosphatase.	6.96533e-111
CP033683.1\|AYW53280.1\|745331_746111_+\|metal-dependent-hydrolase	gnl\|CDD\|171118	PRK11449, PRK11449, metal-dependent hydrolase.	2.36181e-152
CP033683.1\|AYW53276.1\|741176_742766_+\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
CP033683.1\|AYW53285.1\|751104_752121_-\|lipoate--protein-ligase-LplA	gnl\|CDD\|179655	PRK03822, lplA, lipoate-protein ligase A; Provisional.	0
CP033683.1\|AYW53294.1\|761622_762270_+\|phosphoglycerate-mutase-GpmB	gnl\|CDD\|179583	PRK03482, PRK03482, phosphoglycerate mutase GpmB.	7.94089e-156
CP033683.1\|AYW53290.1\|756688_758356_-\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0

>CP033683.1|AYW53284.1|750217_750937_+|purine-nucleoside-phosphorylase
MATPHINAEMGDFADVVLMPGDPLRAKHIAETFLEDVREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVRADVKLRDVVIGMGACTDSKVNRLRFKDHDFAAIADFGMVRNAVDAAKALGVDARVGNIFSADLFYTPDPSMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALESVLLGDKE
>CP033683.1|AYW53283.1|748890_750114_+|phosphopentomutase
MKRAFIMVLDSFGIGATEDAARFGDVGSDTMGHIAEACAKGEADHGRKGPLNLPNLTRLGLVKAHEGSTGKIAAGMDASADVIGAYAWAHELSSGKDTPSGHWEIAGVPVLFEWGYFSDHQNSFPQELLDKLVKRANLPGYLGNCHSSGTVILDELGEEHMKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFVGDKPGHFQRTGNRHDLAVEPPAPTVLQKLVDEKGGHVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDKTIVFTNFVDFDSSWGHRRDIAGYAAGLELFDRRLPELMALVGEDDILILTADHGCDPSWQGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTLAKYFGTSDMEYGKAMF
>CP033683.1|AYW53282.1|747515_748838_+|thymidine-phosphorylase
MFLAQEIIRKKRDGHALSDDEIRFFINGIRDNTVSEGQIAALAMTIFFHDMSMPERVSLTMAMRDSGTVLDWKSLNLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYVPMISGRGLGHTGGTLDKLEAIPGFDIFPDDARFRGIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSAALAEAIVGVSNGAGVRTTALLTDMNQVLASSAGNAVEVREAVRFLTGEYRNPRLFDVTMALCVEMLISGKLAQDDADARAKLQAVLDNGKAAELFGRMVAAQKGPTDFVENYDSYLPTAMLSKAVYADGEGFVAEMDTRALGMAVVSMGGGRRQASDPIDYSVGFTDMARLGDSVDGQRPLAVIHAKDEASWQEAAKAVKAAIKLDDKAPKETPTVYRRITE
>CP033683.1|AYW53281.1|746579_747359_+|deoxyribose-phosphate-aldolase
MTDLSASSLRALKLMDLTTLNDDDTNEKVIALCHQAKTPVGNTAAICIYPRFIPIARKTLNAQGTPDIRIATVTNFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALIAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKEEALIRKASEISIKAGADFIKTSTGKVPVNATPESARIMLEVIRDMGVQKTVGFKPAGGVRSAEDAQQFLAIADELFGADWADSRHYRFGASSLLASLLKALGHGDGKSASSY
>CP033683.1|AYW53280.1|745331_746111_+|metal-dependent-hydrolase
MTWTFIDTHCHFDFPPFAGHAAESLARAAQAGVTQIIVPAIEAENFPRVLALAEQHEAIYAAVGLHPIAIERHDERSLERLEECLRQRHRKLVAVGETGLDLYRDDPQFERQQVMLEAQLRLAKRYDLPVILHSRRTHDKLAMLLKKHALPRTGVVHGFAGSLQQAERFVQAGYKIGVGGTITYPRASKTRDVMARLPLSALLLETDAPDMPLNGFQGQPNRPEQVARVFASLCELRQEPADVIANALIHNTKALFCTL
>CP033683.1|AYW53279.1|744261_745335_+|patatin-family-protein
MGHRIPVTLGNIAPLSVKPFLPGKLGLVCEGGGQRGIFTAGVLDEFMRAGFNPFDIMLGTSAGAQNLSAYMCNQQGYARKVITRYTTAREFFDPMRFVRGGNLIDLDWLVETTAQKMPLAMSYAEEQFALGKELWMCACRGDDYTPDYFAPTQTTWLDLIRASSAIPGFYRSGVMLDGISYLDGGVSDAIPVQEAARRGAQTIVVIRTVPSQMFYTPQWFKRMERWLGESSLQPFVNLVQHHEATYRTTQQFIEKPPGKLRILEIYPQKPLKSMALGSRLPALLEDYKTGRQCGRYFLATVGKMLADRPPLVRHLPRVTQPASVVVPAASVANDSHPATFVTAPQANDASFDNEDLA
>CP033683.1|AYW53278.1|743850_744012_+|DUF1328-domain-containing-protein
MFRWGIIFLVIALIAAALGFGSLAGTAAWAAKIVFVVGIILFLVSLFTGRRRP
>CP033683.1|AYW53277.1|742984_743596_+|molecular-chaperone-OsmY
MTRLKDAGTLLALFLGSAMISASAYAENPPANSAQSVATSAGQAVDSSLNKVGDFMDDSTITARVKAALIDDKNIRSSDISVKTENKVVTLSGSVDSAEQKDLAVNAAKTVKGVTTVNDQLNVVAEKSASLEGYAGDTAITSQVKAKLLADDIVPSRKVTVETRDGTVHLSGTVDSRQQADRAADIAKAVSGVKNVENNLSVK
>CP033683.1|AYW53276.1|741176_742766_+|peptide-chain-release-factor-3
MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSSQHAKSDWMEMEKQRGISITTSVMQFPYHNSLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELRIACAPITWPIGCGKLFKGVYHLYKDETYLYQTGKGHTIQEVRIVKGLNNPDLDLAVGEDLAQQLRDELELVQGASNEFDKDLFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRKTDTREVTAEEEKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTGKDVVISDALTFMAGDRSHVEEAWPGDIIGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPIANNDLIVGAVGVLQFDVVVARLKSEYNVEAIYESVNVATARWVESTDVKKFEEFKRKNEIQLALDGGDNLTYIAPTMVNLNLTQERYPDVLFRKTREH
>CP033683.1|AYW53275.1|740407_741085_+|dUMP-phosphatase
MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFSAEDFQDYQAVNKPLWVDYQNGTITALQLQHQRFNSWAERLSVPPGELNDAFMNAMAEICSPLPGAISLLNALQGKVKMGIITNGFTSLQQIRLERTGLRDHFDLLIISEEVGVAKPDARIFEYALAQAGHPDRSRVLMVGDTAESDIRGGVNAGLATCWLNAHQRELPADLHPDWTVTSLSDLEQLLCKH
>CP033683.1|AYW53285.1|751104_752121_-|lipoate--protein-ligase-LplA
MSTLRLLLSDSTDPWFNLAVEECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTVSTRIVLAALAALGVAAEASGRNDLVVKTAEGDRKISGSAYRETLDRGFHHGTLLLNADLSRLANYLNPDKKKLQAKGITSVRGRVANLVELLPGITHQQVCSAIEEAFFAYYGERVAAEVISPDKTPDLPNFAETFARQSSWAWNFGQAPAFSHLLDERFVWGGVELHFDVEKGHITRTQVFTDSLNPAPLEALATRLQGCPYRADVLQQACEALIVDFPEQEKELRELSGWIAGAVR
>CP033683.1|AYW53286.1|752138_752774_-|YtjB-family-periplasmic-protein
MVRAKLKFRLHRAVIVLICLALLVALMQGASWFSQNSQKQRNPQLEELARTLAQQVTLNLAPMMRSETPDEKRIGELLELLTRQSRVLDAGVYDDQGDLVARSGEGVNVRDRLALDGKKAGGYFNQQIVEPIQGKNGPLGYLRLTLDTHTLATEAKQVDNTTNILRLMLLLSLAIGVVLTRTLLQGKRTRWQQSPFLLTANKPVQDEDKDE
>CP033683.1|AYW53287.1|752877_753849_+|phosphoserine-phosphatase
MPNSLTWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYGRGLDKRRLTAWQRELGAALVIVASWVVEDYQVIRLAGSLTLRATRLAHEAGLDVAPLGKIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEMVSEVTERAMRGELDFTASLRQRVATLKDADANILLQVRESLPLMPGLAQLVLKLETLGWKVAIASGGFTFFAEYLRDKLHLDAVVANELEIMDGKLTGNVIGDIVDAKYKAATLRKLAEKYAIPPAQTVAIGDGANDLPMIKAAGLGIAYHAKPKVNEQAEVTIRHADLMGVFCILSGSMNQK
>CP033683.1|AYW53288.1|753859_755242_+|DNA-repair-protein-RadA
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPQVARNERLTGYAGNAGASKVQKLSEISLEALPRFSTGFKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQTLCRLSENMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICQIADDEKPQLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRDVAIIMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVAETSADLALLLAMVSSLRDRPLPHDLVVFGEVGLSGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL
>CP033683.1|AYW53289.1|755387_756620_+|multifunctional-transcriptional-regulator/nicotinamide-nucleotide-adenylyltransferase/ribosylnicotinamide-kinase-NadR
MSSFDYLKTAIKQKGCTLQQVAEASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGLEFPRRQKSVGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGYDDTRDRQLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSRGIRAFMSDKGIQPNWIYTSEEADAQQYRQHLAIETVLIDPKRTFMSISGGQIRENPFRYWEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEMALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVSTQAFCLKYEGREHPFVQALIDEYRFDLVILLENNTPWVADGLRSLGSSVDRKEFQTLLVSLLKENEIDFVHVKESDYDTRFLRCVDLVKQLMGEPG
>CP033683.1|AYW53290.1|756688_758356_-|energy-dependent-translational-throttle-protein-EttA
MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDTDIEGEARPQPGLKIGYLPQEPQLNPEQTVRESVEEAVAEVVNALKGLDEVYAKYAEPDADFDKLAAQQGKFEEIIQAHDGHNLNVQLERAADALRLPDWEAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNNVEYQKRNETNELFIPPGARLGDKVVEVSNLRKSYGDRVLIDDLTFSVPKGAIVGIIGPNGAGKSTLFRMMSGQEQPDAGSITLGETVKLASVDQFRDAMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNVLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGKVEFFEGNFTEYEEYKKRTLGADALEPKRIKYKRIAK
>CP033683.1|AYW53291.1|758589_760527_+|murein-transglycosylase
MEKAKTMAWRLLAASVSLLTLSQLAHADSLDEQRSRYAQIKQAWDSRQMSVVEQLMPTLTTYPLYPYLQYRQITDDLMNQPALVVKNFIEANPTLPPARTLKSRFVNELARRTDWSGLLAFSPEKPTSTEAQCNYYYAKLSVGQAQEAWDGAKALWLTGKSQPNACDALFSAWRSSGKQDPLAYLERIRLAMKAGNTGLVSVLAQQMPPEYQTISSAVVALANDPNTVMTFARTTGATDFTRQMAAVAFASVARQDVENARLMIPSLVQAQKLNEDQTQELRDIVAWRLMGNDVTEEQAVWRDDAIMRSQSTALVERRVRMALGAGDRHGLNTWLARLPMEAKEKDEWRYWQADLLLERGRDDEAKAILRSLMQQRGFYPMIAAQRLGEDFTFRIDKAPENLDPALTSGPEMARVRELMYWNMDNTARSEWANLVTSRTKEQQAQLARYAFNQHWWDLSVQATIAGKLWDQLEERFPLAYNDLFARYISGKAIPQSYAMAIARQESAWNPKVRSPVGASGLMQIMPGTATHTVGMFSIPGYSSPSQLLDPETNINIGTSYLQYVYQQFGNNRIYASAAYNAGPGRVRTWQGNSAGRIDAVAFIESIPFSETRGYVKNVLSYDAYYRYFMGQKASMLSDAEWQQRY
>CP033683.1|AYW53292.1|760680_761007_+|trp-operon-repressor
MTQQSPYSAAVAEQRHQEWLRFVALLQQAYADDLHLPLLQLMLTPDEREALGTRVRIIEELLRGEMSQRELKSELGAGIATITRGSNSLKSAPPELRQWLEQALLNGK
>CP033683.1|AYW53293.1|760993_761509_-|non-canonical-purine-NTP-phosphatase
MHHVVSATTNPAKIQAILQAFNEIFGEGSCHIESISVESGVPEQPFGNEETRAGARNRVANARAVQPNADFWVAIEAGIDEGSTFSWVVIEDRHQRGEARSATLPLPAVILEKVRAGEALGPVMSQHTGIDEIGRKEGAIGVFTAGKLTRSSVYHQAVVLALSPFHNLIYR
>CP033683.1|AYW53294.1|761622_762270_+|phosphoglycerate-mutase-GpmB
MLQVHLVRHGETQWNAERRIQGQSDSPLTPHGERQAWQVGERARTLGITHIIASDLGRTRRTAEIIAEACGCDVILDSRLRELDMGVLEKRHIDSLSEEEEEWRRRLVDGTPDGRIPQGESMLELSERMHAALASCLELPAGSRPLLVSHGIALGCLVSTILGLPAHAERRLRLRNCSISRVDYQQSLWLASGWVVETAGDVSHLDAPAMDELQR

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Crispr_ID: CP033683_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033683_3

1431536-1431664

Orphan

Consensus_repeat	Method
ACCCCGTAGCCCCGGTAAGCGCAGCGCCACCGGGGAGTTTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033683_3

>merge|CP033683|3|1431536-1431664|CRISPRCasFinder
ACCCCGTAGCCCCGGTAAGCGCAGCGCCACCGGGGAGTTTCCCGGATAGCGGCGCCAGCGCCTTATCCGGGTTACCCGACCGCACAACCCCGTAGCCCCGGTAAGCGCAGCGCCACCGGGGAGTTTCCC

>CP033683|3|3|1431536-1431664|CRISPRCasFinder
ACCCCGTAGCCCCGGTAAGCGCAGCGCCACCGGGGAGTTTCCC	GGATAGCGGCGCCAGCGCCTTATCCGGGTTACCCGACCGCACA
ACCCCGTAGCCCCGGTAAGCGCAGCGCCACCGGGGAGTTTCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP033683.1\|AYW53864.1\|1439829_1441302_-\|betaine-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|183918
CP033683.1\|AYW53862.1\|1436918_1437614_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
CP033683.1\|AYW53855.1\|1429194_1429959_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
CP033683.1\|AYW53856.1\|1430139_1431477_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|235687
CP033683.1\|AYW53853.1\|1427017_1427683_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
CP033683.1\|AYW53865.1\|1441313_1441907_-\|transcriptional-regulator-BetI	unknown	unknown	gnl\|CDD\|179115
CP033683.1\|AYW53850.1\|1422080_1423349_+\|Zn-dependent-hydrolase	unknown	unknown	gnl\|CDD\|237250
CP033683.1\|AYW53866.1\|1442035_1444069_+\|choline-transporter	unknown	unknown	gnl\|CDD\|236635
CP033683.1\|AYW53861.1\|1435137_1436706_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173877
CP033683.1\|AYW53847.1\|1418832_1419876_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226967
CP033683.1\|AYW53848.1\|1419865_1420876_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
CP033683.1\|AYW53851.1\|1425461_1426313_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270343
CP033683.1\|AYW53852.1\|1426361_1427003_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
CP033683.1\|AYW53854.1\|1427675_1428437_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
CP033683.1\|AYW53849.1\|1420906_1422091_+\|amidase	unknown	unknown	gnl\|CDD\|181375
CP033683.1\|AYW53857.1\|1431666_1432374_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224049
CP033683.1\|AYW53859.1\|1433189_1434023_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
CP033683.1\|AYW53860.1\|1434022_1435036_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
CP033683.1\|AYW53858.1\|1432360_1433197_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
CP033683.1\|AYW53863.1\|1438132_1439815_-\|choline-dehydrogenase	unknown	unknown	gnl\|CDD\|235000

Protein	Function_ID	Function_description	E-value
CP033683.1\|AYW53864.1\|1439829_1441302_-\|betaine-aldehyde-dehydrogenase	gnl\|CDD\|183918	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.	0
CP033683.1\|AYW53862.1\|1436918_1437614_+\|N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	7.23505e-25
CP033683.1\|AYW53855.1\|1429194_1429959_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	3.05951e-123
CP033683.1\|AYW53856.1\|1430139_1431477_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|235687	PRK06062, PRK06062, hypothetical protein; Provisional.	0
CP033683.1\|AYW53853.1\|1427017_1427683_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.62035e-42
CP033683.1\|AYW53865.1\|1441313_1441907_-\|transcriptional-regulator-BetI	gnl\|CDD\|179115	PRK00767, PRK00767, transcriptional regulator BetI; Validated.	2.91342e-106
CP033683.1\|AYW53850.1\|1422080_1423349_+\|Zn-dependent-hydrolase	gnl\|CDD\|237250	PRK12893, PRK12893, Zn-dependent hydrolase.	0
CP033683.1\|AYW53866.1\|1442035_1444069_+\|choline-transporter	gnl\|CDD\|236635	PRK09928, PRK09928, choline transport protein BetT; Provisional.	0
CP033683.1\|AYW53861.1\|1435137_1436706_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173877	cd08512, PBP2_NikA_DppA_OppA_like_7, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
CP033683.1\|AYW53847.1\|1418832_1419876_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226967	COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism].	2.57383e-126
CP033683.1\|AYW53848.1\|1419865_1420876_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.29042e-156
CP033683.1\|AYW53851.1\|1425461_1426313_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270343	cd13625, PBP2_AA_binding_like_1, Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold. This putative amino acid-binding protein belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.0611e-111
CP033683.1\|AYW53852.1\|1426361_1427003_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.94662e-54
CP033683.1\|AYW53854.1\|1427675_1428437_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	4.89905e-139
CP033683.1\|AYW53849.1\|1420906_1422091_+\|amidase	gnl\|CDD\|181375	PRK08310, PRK08310, amidase; Provisional.	2.77214e-170
CP033683.1\|AYW53857.1\|1431666_1432374_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224049	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	6.20991e-103
CP033683.1\|AYW53859.1\|1433189_1434023_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.08894e-94
CP033683.1\|AYW53860.1\|1434022_1435036_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.18429e-105
CP033683.1\|AYW53858.1\|1432360_1433197_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.44767e-106
CP033683.1\|AYW53863.1\|1438132_1439815_-\|choline-dehydrogenase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0

>CP033683.1|AYW53856.1|1430139_1431477_+|aspartate-aminotransferase-family-protein
MKLAIQNDVTVSNDDVRQLDRAYVFHSWSVQGNINPLVIAGARGCELWDYEGKTYLDFSSQLVNVNIGYQHPRVLAAMKAQLEELVTIAPATANLARGEAAKRIVELAPEGFSKVFFTNAGADANENAIRMARLYTGRDKVLSAYRSYHGNTGSAIAATGDWRRVPNEYSRGHVHFFNPYLYRSEFNAVTEEEECQRALAHLRRIIECEGPGAIAAILLESIPGTAGILVPPDGYMQGVRALADEFGIVLILDEVMAGFGRTGSWFAFEQDGVVPDLVTFAKGVNAGYVPAGGVLISDPIARYFDDHFFAGGLTYSGHPLAMAAIVATIDAMKEENIVENAAQMGNHILRPGLEALAEKHAIIGHVRGRGLFQALELVSDREAKTPLTAADMAAIKGALTEAGLLAFVVENRIHVVPPCTISAEQIAKGLAIFDSVFARFATLAK
>CP033683.1|AYW53855.1|1429194_1429959_-|SDR-family-NAD(P)-dependent-oxidoreductase
MTTNNVVFITGATSGFGEAAAQVFAEAGWSLVLSGRRLARLQKLYDRLSLLVPVHIIELDVRDSEAVAAAVAELPAAFADIKTLINNAGLALAPQPAQKVDLQDWKTMIDTNVTGLVNVTHALLPTLIQHGAGASIINVGSIAGQWPYPGSHVYGASKAFVKQFSYNLRCDLLGTGVRVTDLAPGIAETEFTLVRTKGDQAASDNLYRGTTPLSAQDIAGQMFYIATLPDHMNINRVEVMPVRQAWQPFAIDRD
>CP033683.1|AYW53854.1|1427675_1428437_+|amino-acid-ABC-transporter-ATP-binding-protein
MPDTTAVSIKNVSKQFDNIEVLRDINLTVEKGSVVSILGSSGSGKSTLLRCMNWLEQPDRGEIHIGGQRLGIDEQNGKAMSHRQLSKIRERVGMVFQSFNLWPHLTVQQNVSEALLHVKGMKRDEASAIAIQQLEKVGMAHKADAWPITLSGGQKQRVAIARSLAMSPEVILFDEPTSALDPELVNEVLGVMKALAAEGYTMVVVTHEMDFARQVSDEVVFLEKGLLIEKAPPEKFFTNPDSERVRQFLQSRR
>CP033683.1|AYW53853.1|1427017_1427683_+|amino-acid-ABC-transporter-permease
MNQWAIIWSARDSFIAGLIATLELFILAAVVGLAIGIVLCYLTEYQKRWLNRVIIGFVSLMRAIPFLILAYLLYYGLPEVGISMDAWSAGLVALMIYHGAYFFEILRSQRRVFSAGYIEAAVAQGFSRYQIYRRIILPNIVSSALPLLGNQLIICLKDTAFLSIITVQEITAAANSVQATWFIPFNAFIVAIALYWAISILLELLIKRLSALGARRGMSHA
>CP033683.1|AYW53852.1|1426361_1427003_+|amino-acid-ABC-transporter-permease
MDVISWQLLIEGAWTTLWISAIAIAFGVVIGLLIALVRMLRLPIIDQLLVVYISLARATPLVTLVLFLFLSLPTVGINLDKNVAAIVALTLNTSAFNAEIWRNAFRTFPREQREAAESVGMRRWTYFRYIMLPQMWIESLPALVNEMSFLIKGSPAIAVIGVVDLTRVTNRISSVTYEPLSPILAAGLLYVVIIGMLLKLQGLAERKAKRLAR
>CP033683.1|AYW53851.1|1425461_1426313_+|amino-acid-ABC-transporter-substrate-binding-protein
MNKSLGSMCLGAVMALAFSYHAAAADLPEIEKSGTLKVATEDDYAPFNFMSNGQADGFNKDMLEELRKYAKFHVDQSILPWTGLLAAVSTGQYDMALTGAVITDDRLKVFDFTPPWASAQHYFVKRAGDNSLNTIADLSGKKVGLQAGSALLARLPELKAMLEKTGGKLGPVVEYPSYPEAYADLANKRLDYVINVVISVNDLAKAKPKVFAKGLAVSGPGYMAWPIPKNSPQLLAYMTKFINHMRETGKLAELQKKWFGETYDNLPTEAITSPEQFHKLAGL
>CP033683.1|AYW53850.1|1422080_1423349_+|Zn-dependent-hydrolase
MSSEVLFTPVAGATGWRINGERLWDSLMALAEIGATPKGGCCRLTLTDLDRQGRDVVIGWAQEAGMSVTVDKIGNVFMRREGRNPLLPPIVSGSHIDTQPTGGKFDGNYGVLAALEVVRTLNDLDIETEAPIEVVFWTNEEGSRFVPVMMGSGVFAGVFPLETIYAAQDAQGKTVGEELARIGYVGSQTPGDHPIGAYFEAHIEQGPILEDEEKIIGVVQGVLGIRWYDCVVTGQASHAGPTPMRLRQDALQVATRIMQQVVAIAGRSEEGRGTVGMVQVYPNSRNVVPGEVTFSIDMRNISDAAVDEMDRQLRAFITRVQQESGLAVTLQEVSHYPAAPFHPDCQQAIADAAARLGYPAREIVSGAGHDAVYMSYLAPTGMIFIPCKDGISHNEIEYASPGHVTAGANVLLQVMLQYAQVA
>CP033683.1|AYW53849.1|1420906_1422091_+|amidase
MQDDNHAFMPYPPQPIPHALSGPLSGMTFAVKDLFDVAGYPTGGGNPHLLALSGIKRRTAPVVQRLLDNGARFIGKTHTSELAYSMSGHNVHYGTPRNGAAPNHIPGGSSSGSASAVSNGVCDFALGTDTGGSVRTPASYCGLFGLRPTHGRISLDGCQPLCATMDTCGFFAQTPEVFRAVADCLLDAKPPAIAGVALACHDALFSRLPLRSQQALLPVRQRLERVFGTFTPLNASLPDIDEIYLAFRQIQGFEAWQAQGETIERYGLQLGPDVRERFLWGKAVTPAQYEAACQRREHFTRWWDALLGDAILVLPTVPDGAPLLTAQAEEIETTRRLSHDLLLISVMTRRPQVTLPVAQAGGLPLGISFLGPRGSDRLLVELAVAFAQGDKDEQ
>CP033683.1|AYW53848.1|1419865_1420876_+|ABC-transporter-ATP-binding-protein
MSHEAFVHIRDLRVEFRRDGQTVNAVNGVSFDVHKGEVMALIGESGSGKSVTLRALMRLHPPTSSVLSGTLRVGDEEVLKMSASRLRAYRGARCAMIFQEPLLAFDPVYTVGQQIVEGLRRHEGLSRQAARERALEALRQVRIPSPERRLDAYPHEMSGGMRQRAMIALTLSCNPQLLLADEPTTALDATVQIQILILLREQQKQRELAIIFVTHDIGAAVEIADRVAVMYAGRIVEEASMTDILSRPRHPYTQVLLGSRPKDGLKKGDALHCIPGSPPDLSRLPPGCAFADRCPHARPVCRQTQPVTEQAGQRHVVSCHRWRELTSGVEKPALYA
>CP033683.1|AYW53847.1|1418832_1419876_+|ABC-transporter-ATP-binding-protein
MQPFINIDLGGPAQPLLKVNQLLKYFRAGGAKSREVVQAVDNVSFTVMKGETLGVVGESGCGKSTTARLLMQLLNQDSGELIFDGLTVGSSRLPMKEYRRQVQMVFQDSYASLNPRMTMEESIAFGQRVHGVSAKEASEYARYLLAHVGLEPERFAHRYPHALSGGQRQRVNIARALAMKPRLVILDEAVSALDKSVEAQVLQLLQELKRTLELTYVFISHDLHVVRWLSDRILVMYLGEVVEIGPAEQLFTRSAHPYTRALLSSMPSMDPQNRTLTSPLNGDPPSPISPPSGCRFHTRCPHARAVCAEVKPKLESVGEGHQSACLMAQPSSPWHQNIAIQEVSHVA
>CP033683.1|AYW53857.1|1431666_1432374_-|ABC-transporter-ATP-binding-protein
MAVVNLDALQVIFAEKTAVSAASFSVEAGETFSLIGASGCGKSTILRVLAGLQREWRGGVQLFGKAIAPGVRFQGELRRNVQMVFQDPYASLHPNHTLWRTLAEPLKIHGLDAIRQRVDTALEQVGLPADAARRYPHQLSGGQRQRVAIARALLLRPQILLLDEPTSALDMSVQAEILNLLNRLKQEHGMTYLLVSHDADVIAHMSDRAAFMAEGVIQRFFDREALVKGAHRMAG
>CP033683.1|AYW53858.1|1432360_1433197_-|ABC-transporter-ATP-binding-protein
MTDTRLTVQGLSIDYPSARVVNNVSFTLGNERLALVGESGSGKSMTARALMGLVRRPGVVSAETLNVLGHDLLTLNDRRWRALRGNDIAMVLQDPRYALNPVQTIQAQLEEALTLHQRLSRRARQEAVKAAVAAVGLDLPVLSRYPGELSGGMGQRVMIAIALLNNPKVLIADEPTSALDSRLRNQILELLVEQCQQRQMAMLLISHDLPLVAQHCHRVLVMYQGTQVDEMPARELPQATHPYTRTLWTCRPDASTYGQMLPTLDRTLDFTEAAHGSR
>CP033683.1|AYW53859.1|1433189_1434023_-|ABC-transporter-permease
MPAYLFLRRLRRSPAAFFGLIVIALLLLVALFAPWLAPLDPNWQDAAARLQSPDARHWLGTDSYGRDLLSRLIYGARPALGLVALVTLITLPAGLLVGILSGYYGGWLERILMRFTDVVMSMPRLILAFAFVAMLGPGLVNGALALALTTWPAYARQARSEIQRLRHSDYLAAAEMMGIRGWRLLTGHILPLCLPSAIVRLALDLAGIILAAAGLGFLGLGARPPMAEWGAMIADGMQVIFDQWWIAAAPGAVILIASLAFNLLGDGLRDVLEPQHD
>CP033683.1|AYW53860.1|1434022_1435036_-|ABC-transporter-permease
MPHLSTRVLQGLLTLLLTLFGLLLVTFALSAFSPVDRVLQIVGDHASQSTYDQVRHQLGLDRPLPVQFWHYLVNLAHGDLGTASSTGQPVLHDLLATFPATLELATLALIVGALFGVIAGVLCARYAGSPWDLAVRTLTLIGNSVPIFWLGLLMLALFYAKLQWTPGPGRLDDIYQYTVEPRTGFVLIDTWLSGDKEAFKNAIGHLLLPVLLLGYYSLASITRLTRSACLSEMNKEYILLARAKGASEMTILLRHVLPNIRGTLLTVIALAWTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAIMGGTLLIGASFVFINNLTDLLVRLTDPRVR
>CP033683.1|AYW53861.1|1435137_1436706_-|ABC-transporter-substrate-binding-protein
MTKKLLSLLVLTALSAAVHAATPPSTLVVAQGLDDIVSLDPAEANELSSIQTVPSLYQRLVQPDRDNPEKITPILAASWQADPAAKTLTIKLKPDAKFASGNPLRPEDIIFSYTRAVTLNKSPAFILNVLGWQPDNIASQLKKVDDHTLQLHWTADVSPAVALNILSTPIASIVDEKLVAPNVKDNDFGNSWLKMHSAGSGAFKMRVYQPHQAIVLEANNSSPTGAPKLKSIIIKNVPDPASRRLLIQQGDADIARDLGADQIAALQGKPGVNVLSIPSAEQNYLAFNTGNSANPLLKNPALWEAARWLVDYDGITKDLLKGQYFVHQSFLPVGLPGALDNNPFKFDPEKAKAILAKAGIKDAHFTLDVENKPPFITIAQSMQASFAQGGVKIDLLPAAGSQVYARVRAKQHQAAIRLWIPDYFDAHSNASAFAWNDGKSSTVAGLNGWQIPQLNKETQAAVAEADPAKRLDLYKKMQEELQRSSPYVFVDQGKTQIVVRDNVKGYQQGLNADMVWYDNVTK
>CP033683.1|AYW53862.1|1436918_1437614_+|N-acetyltransferase
MPEINQYGQVVNDVVADWQGARILKRTPLSGRFCRLEPLEVQRHAADLFAAYALGDESDWTWLASTCPASVEATTHWVAGKVNDDALVPFAVIDLQTERAVGLVSYMAIDRAMGTVEIGHVTWSRKMKNTPLGTEAVWLLLKNAFGQGYRRLEWKCDSMNIASRRAAERLGFTWEGCLRQKMVRKGRTRDSDQLSIIDSEWAARDAALRAWLAAENFDGEGRQLKRLEDFR
>CP033683.1|AYW53863.1|1438132_1439815_-|choline-dehydrogenase
MQFDYIIIGAGSAGNVLATRLTEDPHTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNWAYETEPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWATAPGLEQWSYLDCLPYYRKAETRDIGANDYHGGDGPVSVTTPKQNNNPLFHAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPQGRRASTARGYLDQARARPNLTIRTHALTDHIIFAGKRAVGVEWLEGDSTAPSKATASKEVLLCAGAIASPQILQRSGVGDPELLRQFDIPLVHALPGVGENLQDHLEMYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGIGASNQFEAGGFIRSREAFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRLKSRDPHEHPAILFNYMSSEQDWQEFRDAIRITRDIMNQPALDKYRGREISPGLACQSDAELDEFVRNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADAIRGRAPLPRSTARYYVANGAPVRRQAAVEG
>CP033683.1|AYW53864.1|1439829_1441302_-|betaine-aldehyde-dehydrogenase
MSRMAEQQLYIHGGYVPATSGKTFETLNPANGEVLATVQAAGRDDVDRAVKSAQQGQKIWAAMSAMARSRILRKAVDILRERNDELARLETLDTGKPLSETAHVDIVTGADVLEYYAGLIPALEGSQIPLRDSSFIYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYREAGLPDGVFNVLPGIGAETGQYLTEHPDIAKISFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVCDDADLDLAADIAMMANFYSSGQVCTNGTRVFIPTRAKAAFEEKILARVARIRPGDPFEETTNFGPLVSFPHRENVLRYIASGKQEGARLLCGGGVLQGDDFASGAWVAPTVFSDCRDDMTIVREEIFGPVMSILTYDDEAEVIRRANATEYGLAAGVVTANLNRAHRIIHQLEAGICWINSWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSIQVEMGQFQSIF
>CP033683.1|AYW53865.1|1441313_1441907_-|transcriptional-regulator-BetI
MPKLGMQPIRQRQLIDATLEAINAVGMHDATIAQIARRAGVSTGIISHYFKDKNGLLEATMRDITGQLRLAVLSRLHALPGASAERRLRAIVAGNFDDSQISSAAMKAWLAFWASSMHQPMLYRLQQVCSRRLLSNIVYEFQRELPRQQAQEAGYGLAALIDGLWLRAALSGKPLDKARAETLADHFISQYLPPTSQ
>CP033683.1|AYW53866.1|1442035_1444069_+|choline-transporter
MTDLSPSREKDKINPVVFYTSAGLILLFSLMTIFFSDFSAAWIGRTLNWVSTTFGWYYLLAATLYIVFVVCIACSRFGSVKLGPEHSKPEFSMLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTMEAARQSMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLPLTIRSALYPIFGKKIDGPIGHSVDIAAVVGTIFGIATTLGIGVVQLNYGLNVLFDIPDSLGAKAALIVLSVIIATISVTSGVDKGIRILSELNVVLALGLILFILFMGDTEFLMNALVLNVGDYVNRFMGMTLNSFAFDRPVEWMNNWTLFFWAWWVAWSPFVGLFLARISRGRTIRQFVLGTLIIPFTFTLLWLSVFGNSALYEIIHGNVAFAEEAMAHPERGFYNLLAQYPAFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRIFWSVAIGLLTIGMLMTNGISALQNTTVIMGLPFSFVIFFVMAGLYKSLKVEDYRRESASRDTAPRPLGVQDRLSWKKRLSRLMNYPGTRYTRQMMETVCYPAMEEVAQELKLRGAYVDLKSLPPEEGDNLGHLDLLVHMGDEQNFVYQIWPQQYSIPGFTYRARSGKSTYYRLETFLLEGSQGNDLMDYSKEQVITDILDQYERHLNFIHLHREAPGNSVMFPGM

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1729526 : 1741340

Shigella_phage(20.0%)

holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW54106.1\|1729526_1730813_-	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	1.7e-122	55.0
AYW54107.1\|1730812_1731028_-	hypothetical protein	NA	NA	NA	NA
AYW54108.1\|1731188_1731458_-	hypothetical protein	NA	NA	NA	NA
AYW54109.1\|1731435_1731831_-	hypothetical protein	A0A240F4V4	Ochrobactrum_phage	1.5e-26	54.0
AYW54110.1\|1731827_1732052_-	hypothetical protein	A0A286S2B3	Klebsiella_phage	8.0e-17	59.5
AYW54111.1\|1732057_1732276_-	hypothetical protein	A0A291LBA3	Klebsiella_phage	1.3e-08	46.8
AYW54112.1\|1732400_1732580_+	twin-arginine translocation signal domain-containing protein	NA	NA	NA	NA
AYW54113.1\|1732569_1732863_-	host cell division inhibitory peptide Kil	NA	NA	NA	NA
AYW54114.1\|1733449_1733956_-	helix-turn-helix domain-containing protein	A0A0R6PJG5	Moraxella_phage	2.5e-13	54.9
AYW54115.1\|1734005_1734275_+	hypothetical protein	NA	NA	NA	NA
AYW54116.1\|1734274_1734688_+	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	2.7e-42	68.2
AYW54117.1\|1734702_1734957_+	hypothetical protein	NA	NA	NA	NA
AYW54118.1\|1734953_1736048_+	hypothetical protein	S5FM81	Shigella_phage	4.1e-21	41.2
AYW54119.1\|1736060_1736354_+	hypothetical protein	NA	NA	NA	NA
AYW54120.1\|1736350_1736563_+	hypothetical protein	NA	NA	NA	NA
AYW54121.1\|1736773_1736980_+	hypothetical protein	A0A2I7R8F9	Vibrio_phage	2.5e-12	64.7
AYW54122.1\|1736976_1737636_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	4.7e-97	75.9
AYW54123.1\|1737632_1738250_+	hypothetical protein	H9C175	Pectobacterium_phage	3.3e-68	62.9
AYW54124.1\|1738874_1739660_+	hypothetical protein	NA	NA	NA	NA
AYW54125.1\|1739813_1740083_+\|holin	holin	K7P6H9	Enterobacteria_phage	4.2e-36	82.6
AYW57214.1\|1740060_1740558_+	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.2e-76	82.4
AYW57215.1\|1740554_1740944_+	DUF2570 domain-containing protein	Q8SBD9	Shigella_phage	1.2e-23	47.6
AYW54126.1\|1740831_1741086_+	Rz1 lytic protein	Q8SBD8	Shigella_phage	1.9e-22	69.1
AYW54127.1\|1741115_1741340_+	hypothetical protein	A0A2H4J182	uncultured_Caudovirales_phage	3.7e-22	67.6

DBSCAN-SWA_2

2095258 : 2172811

Enterobacteria_phage(28.57%)

portal,integrase,tail,tRNA

attL 2139631:2139648|attR 2167405:2167422

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW54415.1\|2095258_2096410_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
AYW54416.1\|2096421_2096880_-	NUDIX hydrolase	NA	NA	NA	NA
AYW54417.1\|2096900_2097551_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
AYW54418.1\|2097784_2099035_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
AYW54419.1\|2099152_2100280_-\|integrase	integrase	O21925	Phage_21	3.3e-119	58.4
AYW54420.1\|2100260_2100506_-	excisionase	NA	NA	NA	NA
AYW54421.1\|2100558_2102697_-	exonuclease	S4TNL0	Salmonella_phage	3.9e-100	43.0
AYW54422.1\|2102838_2103183_-	transcriptional regulator	NA	NA	NA	NA
AYW54423.1\|2103225_2103420_-	DUF1482 family protein	NA	NA	NA	NA
AYW54424.1\|2103429_2103669_-	hypothetical protein	NA	NA	NA	NA
AYW54425.1\|2103908_2105333_+\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	1.3e-96	54.2
AYW54426.1\|2105755_2106814_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	6.1e-14	31.1
AYW54427.1\|2107169_2107862_+	EAL domain-containing protein	NA	NA	NA	NA
AYW54428.1\|2107993_2108191_+	hypothetical protein	NA	NA	NA	NA
AYW54429.1\|2108511_2108664_+	isocitrate dehydrogenase	Q77Z09	Phage_21	1.9e-17	90.0
AYW54430.1\|2109039_2109840_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
AYW54431.1\|2110085_2111312_-	MFS transporter	NA	NA	NA	NA
AYW54432.1\|2112605_2113244_+	LysE family translocator	NA	NA	NA	NA
AYW54433.1\|2113234_2113432_-	hypothetical protein	NA	NA	NA	NA
AYW54434.1\|2115704_2116244_+	DUF2058 domain-containing protein	NA	NA	NA	NA
AYW54435.1\|2116997_2118029_-	methionine synthase	NA	NA	NA	NA
AYW54436.1\|2118056_2119040_-	DUF1852 domain-containing protein	NA	NA	NA	NA
AYW57230.1\|2119417_2120278_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AYW57231.1\|2121747_2122299_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
AYW54437.1\|2122449_2123202_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA
AYW54438.1\|2123254_2123911_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA
AYW57232.1\|2123913_2124636_+	glutamine ABC transporter ATP-binding protein GlnQ	G9BWD6	Planktothrix_phage	5.4e-38	44.8
AYW54439.1\|2124657_2125680_+	acyl-CoA--6-aminopenicillanic acid acyl-transferase	NA	NA	NA	NA
AYW54440.1\|2125821_2126298_-	cold shock domain-containing protein	NA	NA	NA	NA
AYW54441.1\|2126484_2126730_-	DUF2543 family protein	NA	NA	NA	NA
AYW54442.1\|2126970_2127588_+	histidine phosphatase family protein	NA	NA	NA	NA
AYW54443.1\|2127614_2129399_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.0e-17	35.5
AYW54444.1\|2131170_2133501_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
AYW54445.1\|2133597_2134545_-	fec operon regulator FecR	NA	NA	NA	NA
AYW57233.1\|2134541_2135060_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
AYW54446.1\|2135850_2136765_+	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.7e-73	50.8
AYW54447.1\|2136856_2137495_+	leucine efflux protein LeuE	NA	NA	NA	NA
AYW54448.1\|2137621_2137885_+	DUF2534 family protein	NA	NA	NA	NA
AYW54449.1\|2137927_2138053_-	hypothetical protein	NA	NA	NA	NA
AYW54450.1\|2138268_2138370_-	hypothetical protein	NA	NA	NA	NA
AYW54451.1\|2138485_2139499_-	diguanylate cyclase	NA	NA	NA	NA
2139631:2139648	attL	NA	NA	NA	NA
AYW54452.1\|2139764_2140748_-\|integrase	site-specific integrase	Q83VS6	Escherichia_phage	4.9e-151	80.1
AYW54453.1\|2140863_2141163_-	XRE family transcriptional regulator	Q1JS83	Enterobacteria_phage	8.7e-43	84.8
AYW54454.1\|2141284_2141554_+	hypothetical protein	Q1JS60	Enterobacteria_phage	9.6e-41	86.5
AYW54455.1\|2141550_2141877_+	hypothetical protein	NA	NA	NA	NA
AYW54456.1\|2142007_2142226_+	DUF4761 domain-containing protein	A0A0M5M1I3	Salmonella_phage	1.6e-06	47.3
AYW54457.1\|2142241_2142619_+	hypothetical protein	NA	NA	NA	NA
AYW54458.1\|2142634_2142907_+	hypothetical protein	NA	NA	NA	NA
AYW54459.1\|2142975_2143200_+	hypothetical protein	NA	NA	NA	NA
AYW54460.1\|2143196_2143763_+	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	6.1e-13	32.1
AYW57234.1\|2143771_2143999_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.9e-05	41.0
AYW54461.1\|2147544_2149233_+	hypothetical protein	D0UIM0	Aggregatibacter_phage	1.3e-175	53.1
AYW54462.1\|2149435_2150800_-	hypothetical protein	R9TRQ8	Vibrio_phage	1.8e-18	22.3
AYW54463.1\|2151384_2152446_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	9.1e-143	69.0
AYW54464.1\|2153562_2156592_+\|tail	phage tail protein I	V5YTN0	Pseudomonas_phage	3.7e-24	38.5
AYW54465.1\|2156588_2156804_+	hypothetical protein	NA	NA	NA	NA
AYW54466.1\|2156788_2157886_+\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	4.7e-09	28.6
AYW54467.1\|2158118_2159849_-	deoxycytidylate deaminase	NA	NA	NA	NA
AYW54468.1\|2160096_2160534_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	8.0e-53	67.4
AYW54469.1\|2160549_2163525_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	1.5e-219	46.5
AYW57235.1\|2163511_2163670_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	3.5e-11	63.3
AYW54470.1\|2163669_2163987_-\|tail	phage tail assembly protein	B9A7B2	Serratia_phage	1.0e-17	54.8
AYW54471.1\|2164032_2164548_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	3.7e-57	61.2
AYW54472.1\|2164547_2165720_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	5.5e-157	70.0
AYW54473.1\|2165874_2167014_+	phage late control D family protein	B9A7A9	Serratia_phage	7.2e-146	71.0
AYW54474.1\|2167057_2167309_+	hypothetical protein	A0A2I8TV89	Erwinia_phage	4.5e-08	49.2
AYW54475.1\|2167572_2167824_+	DUF333 domain-containing protein	NA	NA	NA	NA
2167405:2167422	attR	NA	NA	NA	NA
AYW54476.1\|2167813_2168179_-	DUF488 domain-containing protein	NA	NA	NA	NA
AYW54477.1\|2168165_2168675_-	DUF523 domain-containing protein	NA	NA	NA	NA
AYW54478.1\|2168866_2169559_+	hypothetical protein	NA	NA	NA	NA
AYW54479.1\|2169670_2170855_-	MFS transporter	NA	NA	NA	NA
AYW54480.1\|2170955_2171747_+	AraC family transcriptional regulator	NA	NA	NA	NA
AYW54481.1\|2171730_2172177_-	DUF441 domain-containing protein	NA	NA	NA	NA
AYW54482.1\|2172310_2172811_-\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_3

3600286 : 3608130

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW55637.1\|3600286_3601291_+	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	5.8e-30	29.1
AYW55638.1\|3601295_3601481_-	hypothetical protein	NA	NA	NA	NA
AYW55639.1\|3601677_3602844_-	UDP-glucose 6-dehydrogenase	O41091	Paramecium_bursaria_Chlorella_virus	8.2e-113	54.7
AYW55640.1\|3603019_3603574_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.1e-50	56.4
AYW55641.1\|3603585_3604476_-	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	2.5e-29	34.6
AYW55642.1\|3604508_3605378_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.5e-111	67.7
AYW55643.1\|3605416_3606481_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.4e-103	54.1
AYW55644.1\|3606723_3608130_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.1e-39	29.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP033683

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection