CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033709	Yersinia pseudotuberculosis strain FDAARGOS_583 chromosome, complete genome	0 crisprs	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG	0	0	7	0
CP033708	Yersinia pseudotuberculosis strain FDAARGOS_583 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

445613 : 453415

uncultured_Mediterranean_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW94824.1\|445613_448169_+	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	4.4e-26	22.8
AYW94825.1\|448435_449644_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
AYW94826.1\|449872_450871_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	3.6e-32	37.3
AYW94827.1\|450925_451927_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	2.3e-07	35.6
AYW94828.1\|452030_452657_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	9.1e-34	49.4
AYW94829.1\|452650_453415_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.2e-57	46.7

DBSCAN-SWA_2

1494792 : 1567806

uncultured_virus(25.0%)

protease,transposase,tRNA,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW95694.1\|1494792_1496181_+\|tRNA	L-seryl-tRNA(Sec) selenium transferase	NA	NA	NA	NA
AYW95695.1\|1496177_1498151_+\|tRNA	selenocysteinyl-tRNA-specific translation elongation factor SelB	A0A2K9KZ60	Tupanvirus	1.1e-11	25.1
AYW95696.1\|1499023_1500232_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
AYW95697.1\|1500579_1501161_-	DUF4225 domain-containing protein	NA	NA	NA	NA
AYW95698.1\|1501518_1501722_+	hypothetical protein	NA	NA	NA	NA
AYW95699.1\|1501870_1503100_-	MFS transporter	NA	NA	NA	NA
AYW95700.1\|1504311_1505520_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
AYW95701.1\|1507189_1509826_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
AYW95702.1\|1510199_1511369_-	acetylornithine deacetylase	NA	NA	NA	NA
AYW95703.1\|1511613_1512618_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
AYW98232.1\|1512800_1513574_+	acetylglutamate kinase	NA	NA	NA	NA
AYW95704.1\|1513740_1515114_+	argininosuccinate lyase	NA	NA	NA	NA
AYW95705.1\|1515712_1518205_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
AYW95706.1\|1518432_1519050_+	heme acquisition hemophore HasA	NA	NA	NA	NA
AYW95707.1\|1519215_1521024_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	3.5e-25	31.2
AYW95708.1\|1521099_1522428_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
AYW95709.1\|1522492_1523296_+	energy transducer TonB	NA	NA	NA	NA
AYW95710.1\|1523411_1524875_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA
AYW95711.1\|1524969_1525701_-	glutathione peroxidase	A0A1D8KSL1	Synechococcus_phage	1.3e-47	58.5
AYW95712.1\|1525847_1526765_+	DNA-binding transcriptional regulator OxyR	NA	NA	NA	NA
AYW95713.1\|1526747_1528148_-	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA
AYW95714.1\|1528353_1529001_+	HTH-type transcriptional repressor FabR	NA	NA	NA	NA
AYW95715.1\|1529013_1529421_+	YijD family membrane protein	NA	NA	NA	NA
AYW95716.1\|1529554_1530658_-\|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	NA	NA	NA	NA
AYW95717.1\|1531119_1533012_+	TonB-dependent vitamin B12 receptor BtuB	A0A0P0I887	Acinetobacter_phage	2.2e-14	29.3
AYW95718.1\|1532956_1533820_+	glutamate racemase	NA	NA	NA	NA
AYW95719.1\|1534085_1534271_-	hypothetical protein	NA	NA	NA	NA
AYW95720.1\|1540698_1541655_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AYW95721.1\|1541740_1543231_+	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-10	24.2
AYW95722.1\|1543242_1544262_+	ABC transporter permease	NA	NA	NA	NA
AYW95723.1\|1544261_1545254_+	sugar ABC transporter permease YjfF	NA	NA	NA	NA
AYW95724.1\|1545240_1546122_-	transcriptional regulator	NA	NA	NA	NA
AYW95725.1\|1546240_1546579_+	DUF413 domain-containing protein	NA	NA	NA	NA
AYW95726.1\|1546959_1548483_-\|protease	ATP-dependent protease	NA	NA	NA	NA
AYW95727.1\|1548637_1548844_-	hypothetical protein	NA	NA	NA	NA
AYW98233.1\|1548866_1548965_+	ilv operon leader peptide	NA	NA	NA	NA
AYW95728.1\|1549106_1550753_+	acetolactate synthase 2 catalytic subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	4.1e-65	31.7
AYW95729.1\|1550749_1551007_+	acetolactate synthase 2 small subunit	NA	NA	NA	NA
AYW95730.1\|1551029_1551956_+	branched-chain amino acid transaminase	NA	NA	NA	NA
AYW95731.1\|1552284_1554135_+	dihydroxy-acid dehydratase	NA	NA	NA	NA
AYW95732.1\|1554140_1555685_+	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA
AYW95733.1\|1555815_1556280_-	DUF943 family protein	NA	NA	NA	NA
AYW95734.1\|1556297_1556762_-	DUF943 family protein	NA	NA	NA	NA
AYW95735.1\|1556841_1557303_-	DUF943 family protein	NA	NA	NA	NA
AYW95736.1\|1557286_1558171_-	DUF3289 family protein	NA	NA	NA	NA
AYW95737.1\|1558818_1559028_+	hypothetical protein	NA	NA	NA	NA
AYW95738.1\|1559082_1559964_-	HTH-type transcriptional activator IlvY	NA	NA	NA	NA
AYW95739.1\|1560259_1561738_+	ketol-acid reductoisomerase	NA	NA	NA	NA
AYW98234.1\|1563661_1565104_+	colicin	NA	NA	NA	NA
AYW95740.1\|1565103_1565367_+	immunity protein	NA	NA	NA	NA
AYW95741.1\|1565628_1565874_+	HNH endonuclease	NA	NA	NA	NA
AYW95742.1\|1565882_1566137_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AYW95743.1\|1566253_1566709_+	HNH endonuclease	NA	NA	NA	NA
AYW95744.1\|1566710_1566965_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AYW95745.1\|1567081_1567546_+	HNH endonuclease	NA	NA	NA	NA
AYW95746.1\|1567542_1567806_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

DBSCAN-SWA_3

1854297 : 1925498

Pseudomonas_phage(28.57%)

tail,tRNA,protease,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW95967.1\|1854297_1855662_+	MFS transporter	Q6JIH2	Burkholderia_virus	7.9e-14	25.8
AYW95968.1\|1855751_1856426_+	GntR family transcriptional regulator	NA	NA	NA	NA
AYW95969.1\|1856491_1856968_+	hypothetical protein	NA	NA	NA	NA
AYW95970.1\|1857397_1858153_-	DNA adenine methylase	A2I2Y7	Vibrio_virus	4.5e-96	65.1
AYW98251.1\|1858287_1858644_-	hypothetical protein	A0A0A0YSY3	Erwinia_phage	8.3e-08	46.3
AYW95971.1\|1859905_1860475_-	DUF2313 domain-containing protein	A0A0M3LQE1	Mannheimia_phage	7.0e-25	35.4
AYW95972.1\|1860471_1861533_-\|plate	baseplate J/gp47 family protein	A0A0M3LQN4	Mannheimia_phage	1.3e-75	46.0
AYW95973.1\|1861532_1861883_-	hypothetical protein	A0A2H4JDR8	uncultured_Caudovirales_phage	1.7e-29	62.6
AYW95974.1\|1861937_1862588_-\|plate	phage baseplate assembly protein V	A0A0M3LPA3	Mannheimia_phage	2.5e-50	48.2
AYW95975.1\|1862917_1864312_-\|tail	phage tail protein	B7SDP8	Haemophilus_phage	1.3e-91	44.9
AYW98252.1\|1864298_1864553_-	DUF2635 domain-containing protein	B7SDP7	Haemophilus_phage	1.1e-06	56.5
AYW95976.1\|1864545_1865196_-	DUF1834 family protein	NA	NA	NA	NA
AYW95977.1\|1865192_1865621_-	DUF1320 domain-containing protein	A0A1B0T6F3	Thiobacimonas_phage	1.0e-12	38.8
AYW95978.1\|1865632_1865920_-	hypothetical protein	NA	NA	NA	NA
AYW95979.1\|1866102_1866603_-	DUF1804 family protein	L7P7L4	Pseudomonas_phage	4.2e-50	58.3
AYW95980.1\|1866605_1866893_-	hypothetical protein	NA	NA	NA	NA
AYW95981.1\|1866889_1867132_-	hypothetical protein	NA	NA	NA	NA
AYW95982.1\|1867128_1867716_-	hypothetical protein	A0A2D1GNR2	Pseudomonas_phage	4.7e-24	44.5
AYW95983.1\|1867693_1867948_-	hypothetical protein	A0A2D1GNW8	Pseudomonas_phage	1.8e-12	47.6
AYW98253.1\|1867938_1868571_-	glycoside hydrolase family 19 protein	F1C5D2	Cronobacter_phage	1.4e-66	61.5
AYW95984.1\|1868668_1868938_-	hypothetical protein	NA	NA	NA	NA
AYW95985.1\|1868949_1869384_-	hypothetical protein	A0A2D1GNW5	Pseudomonas_phage	3.8e-31	50.7
AYW95986.1\|1869383_1869785_-	regulatory protein GemA	A0A0A7DJY7	Pseudomonas_phage	1.8e-22	42.7
AYW95987.1\|1869769_1870243_-	hypothetical protein	NA	NA	NA	NA
AYW95988.1\|1871022_1873074_-\|transposase	transposase	A0A2D1GNK9	Pseudomonas_phage	7.1e-176	49.2
AYW95989.1\|1873070_1873292_-	transcriptional regulator	M1PVU4	Vibrio_phage	4.5e-20	73.9
AYW95990.1\|1873525_1874062_+	hypothetical protein	A0A0C4UQZ2	Shigella_phage	2.7e-10	26.9
AYW95991.1\|1874726_1875023_-	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
AYW95992.1\|1875047_1876013_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
AYW98254.1\|1876601_1877483_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
AYW95993.1\|1877558_1879013_-	sodium/panthothenate symporter	NA	NA	NA	NA
AYW95994.1\|1879002_1879245_-	DUF997 family protein	NA	NA	NA	NA
AYW95995.1\|1880354_1881704_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
AYW95996.1\|1881715_1882180_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
AYW95997.1\|1882337_1882790_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
AYW95998.1\|1883051_1883672_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
AYW95999.1\|1883671_1884772_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
AYW96000.1\|1884994_1885972_-	oxidoreductase	NA	NA	NA	NA
AYW96001.1\|1886372_1888289_+	RNase E specificity factor CsrD	NA	NA	NA	NA
AYW96002.1\|1888625_1889669_+	rod shape-determining protein	F2Y0P3	Organic_Lake_phycodnavirus	6.0e-06	22.3
AYW96003.1\|1889873_1890869_+	rod shape-determining protein MreC	NA	NA	NA	NA
AYW96004.1\|1890865_1891354_+	rod shape-determining protein MreD	NA	NA	NA	NA
AYW96005.1\|1891367_1891961_+	septum formation inhibitor Maf	NA	NA	NA	NA
AYW96006.1\|1891950_1893420_+	ribonuclease G	NA	NA	NA	NA
AYW96007.1\|1893513_1897419_+	AsmA2 domain-containing protein	NA	NA	NA	NA
AYW96008.1\|1897415_1898285_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
AYW96009.1\|1898296_1899742_+\|protease	metalloprotease TldD	NA	NA	NA	NA
AYW96010.1\|1899942_1902801_-	RHS repeat protein	NA	NA	NA	NA
AYW96011.1\|1903060_1903420_-	DUF2570 domain-containing protein	NA	NA	NA	NA
AYW96012.1\|1903416_1903818_-	M15 family peptidase	A0A249XWK9	Proteus_phage	2.8e-36	61.0
AYW96013.1\|1903830_1904133_-	hypothetical protein	NA	NA	NA	NA
AYW98255.1\|1908816_1910958_-	toxin subunit	NA	NA	NA	NA
AYW96014.1\|1912435_1914928_-	toxin	NA	NA	NA	NA
AYW96015.1\|1915163_1916030_-	LysR family transcriptional regulator	NA	NA	NA	NA
AYW96016.1\|1916290_1917202_-	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
AYW96017.1\|1917504_1917708_+	DUF1656 domain-containing protein	NA	NA	NA	NA
AYW96018.1\|1917715_1918651_+	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
AYW96019.1\|1918652_1920608_+	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
AYW96020.1\|1920874_1922344_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
AYW98256.1\|1922553_1923012_+	ribonuclease	NA	NA	NA	NA
AYW96021.1\|1923016_1923298_+	ribonuclease inhibitor	NA	NA	NA	NA
AYW96022.1\|1923428_1923977_-	ribosome-associated protein	NA	NA	NA	NA
AYW96023.1\|1924157_1925498_+\|protease	metalloprotease PmbA	NA	NA	NA	NA

DBSCAN-SWA_4

3185485 : 3260764

uncultured_Caudovirales_phage(20.0%)

protease,transposase,tRNA,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW98336.1\|3185485_3186601_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
AYW97015.1\|3186787_3187234_-	NUDIX hydrolase	NA	NA	NA	NA
AYW97016.1\|3187226_3187853_-	23S rRNA pseudouridine synthase E	NA	NA	NA	NA
AYW97017.1\|3187983_3189237_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	5.2e-20	88.9
AYW97018.1\|3189371_3190415_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
AYW97019.1\|3190674_3190935_-	hypothetical protein	NA	NA	NA	NA
AYW97020.1\|3191054_3192635_-	PAS domain S-box protein	A0A1B0V854	Salmonella_phage	2.5e-35	50.7
AYW97021.1\|3193554_3194412_-	SDR family oxidoreductase	NA	NA	NA	NA
AYW97022.1\|3194571_3194955_+	transcriptional regulator	NA	NA	NA	NA
AYW97023.1\|3195486_3196812_+	AppA family phytase/histidine-type acid phosphatase	NA	NA	NA	NA
AYW97024.1\|3197105_3197321_-	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	1.4e-05	44.6
AYW97025.1\|3197611_3198514_-	hypothetical protein	NA	NA	NA	NA
AYW97026.1\|3198602_3199052_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
AYW97027.1\|3199519_3200053_-	hypothetical protein	NA	NA	NA	NA
AYW97028.1\|3200335_3201346_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA
AYW97029.1\|3201819_3203028_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
AYW97030.1\|3203095_3206278_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	62.3
AYW97031.1\|3206818_3207031_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	2.0e-25	80.0
AYW97032.1\|3207122_3207437_+	protein DsrB	NA	NA	NA	NA
AYW97033.1\|3207619_3209359_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	9.7e-09	33.7
AYW97034.1\|3210472_3211183_+	MgtC family protein	G3MA03	Bacillus_virus	6.3e-15	39.3
AYW97035.1\|3211575_3214275_+	magnesium-translocating P-type ATPase	M1HM40	Paramecium_bursaria_Chlorella_virus	1.1e-43	25.5
AYW97036.1\|3215453_3215813_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
AYW97037.1\|3215816_3216398_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
AYW97038.1\|3216602_3217490_+	flagellar motor stator protein MotA	NA	NA	NA	NA
AYW97039.1\|3217486_3218824_+	motility protein MotB	NA	NA	NA	NA
AYW97040.1\|3218834_3220991_+	chemotaxis protein CheA	NA	NA	NA	NA
AYW97041.1\|3221153_3221651_+	chemotaxis protein CheW	NA	NA	NA	NA
AYW97042.1\|3222270_3225135_+	DUF2339 domain-containing protein	NA	NA	NA	NA
AYW97043.1\|3225203_3225905_+	hypothetical protein	NA	NA	NA	NA
AYW97044.1\|3226145_3227819_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-11	34.7
AYW97045.1\|3228003_3229614_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.9e-12	31.2
AYW97046.1\|3229786_3230659_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
AYW97047.1\|3230658_3231708_+	chemotaxis response regulator protein-glutamate methylesterase	Q56AR1	Bacillus_thuringiensis_phage	6.1e-06	32.0
AYW97048.1\|3231808_3232198_+	chemotaxis protein CheY	A0A2K9L4R0	Tupanvirus	1.3e-06	32.3
AYW97049.1\|3232207_3232852_+	protein phosphatase CheZ	NA	NA	NA	NA
AYW97050.1\|3233143_3233263_-	hypothetical protein	NA	NA	NA	NA
AYW97051.1\|3233386_3234151_+	N-acetylmuramoyl-L-alanine amidase	A0A076YN96	Rhizobium_phage	1.9e-09	27.2
AYW97052.1\|3234507_3237150_+	cell surface protein	NA	NA	NA	NA
AYW97053.1\|3237249_3238203_+	hypothetical protein	NA	NA	NA	NA
AYW97054.1\|3238821_3240051_-	alanine racemase	NA	NA	NA	NA
AYW97055.1\|3240452_3240647_-	hypothetical protein	NA	NA	NA	NA
AYW97056.1\|3241212_3241461_+	hypothetical protein	NA	NA	NA	NA
AYW97057.1\|3241853_3243110_+	patatin-like phospholipase family protein	NA	NA	NA	NA
AYW97058.1\|3243264_3243498_+	DNA-binding protein	NA	NA	NA	NA
AYW97059.1\|3244293_3244683_+	ASCH domain-containing protein	NA	NA	NA	NA
AYW97060.1\|3244792_3245032_-	DUF1480 family protein	NA	NA	NA	NA
AYW97061.1\|3245239_3246229_-\|coat	spore coat protein U	NA	NA	NA	NA
AYW97062.1\|3246434_3248882_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
AYW97063.1\|3248983_3249736_-	molecular chaperone	NA	NA	NA	NA
AYW97064.1\|3249766_3250324_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
AYW97065.1\|3250344_3250875_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
AYW97066.1\|3250880_3251435_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
AYW97067.1\|3251917_3254569_-	PqiB family protein	NA	NA	NA	NA
AYW97068.1\|3254537_3255890_-	paraquat-inducible protein A	NA	NA	NA	NA
AYW97069.1\|3256016_3256514_+	GAF domain-containing protein	NA	NA	NA	NA
AYW97070.1\|3256609_3257323_+	RNA chaperone ProQ	NA	NA	NA	NA
AYW97071.1\|3257342_3259421_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	4.0e-86	34.8
AYW97072.1\|3259882_3260764_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_5

3820631 : 3860116

Salmonella_phage(40.0%)

plate,transposase,integrase

attL 3814423:3814438|attR 3861774:3861789

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3814423:3814438	attL	NA	NA	NA	NA
AYW97538.1\|3820631_3820736_-\|transposase	IS3 family transposase	NA	NA	NA	NA
AYW97539.1\|3821413_3821848_+	hypothetical protein	NA	NA	NA	NA
AYW97540.1\|3821859_3822429_+	hypothetical protein	NA	NA	NA	NA
AYW97541.1\|3824092_3825169_-	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
AYW97542.1\|3825234_3825525_-	antitoxin	K4NZP3	Burkholderia_phage	1.8e-05	39.4
AYW97543.1\|3825505_3825778_-	BrnT family toxin	NA	NA	NA	NA
AYW97544.1\|3825808_3826168_+\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	8.9e-18	62.5
AYW97545.1\|3826164_3826464_+	lysozyme	A0A218M4K8	Erwinia_phage	2.6e-23	64.9
AYW97546.1\|3826480_3826768_+	hypothetical protein	NA	NA	NA	NA
AYW98364.1\|3827277_3827733_+	DUF2778 domain-containing protein	NA	NA	NA	NA
AYW98365.1\|3827737_3827992_+	hypothetical protein	NA	NA	NA	NA
AYW97547.1\|3828304_3829817_+\|transposase	IS3 family transposase	NA	NA	NA	NA
AYW97548.1\|3830037_3830382_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
AYW97549.1\|3830643_3830826_-	hypothetical protein	NA	NA	NA	NA
AYW97550.1\|3831017_3831191_-	hypothetical protein	NA	NA	NA	NA
AYW97551.1\|3831434_3831581_-	hypothetical protein	NA	NA	NA	NA
AYW97552.1\|3831949_3832177_-	DNA helicase	A0A192Y673	Salmonella_phage	2.1e-12	57.7
AYW97553.1\|3832287_3832803_+\|integrase	integrase	H9C152	Pectobacterium_phage	1.6e-60	67.5
AYW97554.1\|3832735_3832960_+\|integrase	integrase	K7PLZ2	Enterobacterial_phage	1.5e-18	76.8
AYW97555.1\|3834273_3834654_-	hypothetical protein	NA	NA	NA	NA
AYW97556.1\|3834722_3834944_-	hypothetical protein	NA	NA	NA	NA
AYW97557.1\|3834959_3835502_-	hypothetical protein	NA	NA	NA	NA
AYW97558.1\|3835536_3835905_-	XRE family transcriptional regulator	NA	NA	NA	NA
AYW97559.1\|3835965_3836157_+	hypothetical protein	NA	NA	NA	NA
AYW97560.1\|3836169_3836373_+	DNA-binding protein	NA	NA	NA	NA
AYW97561.1\|3836384_3836567_+	hypothetical protein	NA	NA	NA	NA
AYW97562.1\|3836547_3837552_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	5.4e-121	68.3
AYW97563.1\|3837626_3837842_+	late control protein B	S4TNZ3	Salmonella_phage	1.1e-18	60.6
AYW97564.1\|3838506_3839055_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
AYW97565.1\|3839113_3840967_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
AYW97566.1\|3840938_3841595_-	two-component system response regulator UvrY	NA	NA	NA	NA
AYW97567.1\|3842257_3842482_+	DUF2594 family protein	NA	NA	NA	NA
AYW97568.1\|3842609_3842951_+	GlpM family protein	NA	NA	NA	NA
AYW97569.1\|3842978_3843233_-	hypothetical protein	NA	NA	NA	NA
AYW97570.1\|3843572_3844124_-	attachment protein	A0A1B0VBR9	Salmonella_phage	1.6e-21	34.4
AYW97571.1\|3845238_3846663_+	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA
AYW97572.1\|3846788_3847967_-	YjhT family mutarotase	NA	NA	NA	NA
AYW97573.1\|3848360_3848960_+	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
AYW97574.1\|3849045_3850350_-	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA
AYW97575.1\|3850360_3851467_-	iron uptake system protein EfeO	NA	NA	NA	NA
AYW97576.1\|3851496_3852345_-	FTR1 family protein	NA	NA	NA	NA
AYW97577.1\|3852695_3854180_-	sodium/proline symporter PutP	NA	NA	NA	NA
AYW97578.1\|3854209_3854407_-	hypothetical protein	NA	NA	NA	NA
AYW97579.1\|3854751_3858723_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
AYW97580.1\|3858907_3860116_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
3861774:3861789	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4091249 : 4165188

Indivirus(11.11%)

lysis,plate,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW97772.1\|4091249_4093277_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	8.0e-55	27.1
AYW98374.1\|4093405_4094068_-	hypothetical protein	NA	NA	NA	NA
AYW97773.1\|4094754_4095846_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
AYW97774.1\|4095863_4097117_+	hypothetical protein	NA	NA	NA	NA
AYW97775.1\|4097448_4098630_+	MFS transporter	NA	NA	NA	NA
AYW97776.1\|4098871_4099279_+	hypothetical protein	NA	NA	NA	NA
AYW97777.1\|4099275_4099971_+\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
AYW97778.1\|4100296_4101181_+	cytidine deaminase	NA	NA	NA	NA
AYW97779.1\|4101536_4103234_+	NAD-dependent malic enzyme	NA	NA	NA	NA
AYW97780.1\|4103514_4104252_+	outer membrane permeability protein SanA	NA	NA	NA	NA
AYW97781.1\|4104692_4105703_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA
AYW97782.1\|4105723_4107244_-	galactose/methyl galactoside import ATP-binding protein MglA	F2Y2R6	Organic_Lake_phycodnavirus	2.6e-10	29.9
AYW97783.1\|4107473_4108466_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA
AYW97784.1\|4109213_4110380_-	DUF418 family protein	NA	NA	NA	NA
AYW97785.1\|4110434_4111097_-	GTP cyclohydrolase I FolE	R9TJA5	Vibrio_phage	5.8e-55	53.5
AYW97786.1\|4111280_4112432_-	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA
AYW97787.1\|4112567_4113437_+	LysR family transcriptional regulator	NA	NA	NA	NA
AYW98375.1\|4113716_4114850_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	4.6e-36	30.2
AYW97788.1\|4114870_4115713_+	S-formylglutathione hydrolase	NA	NA	NA	NA
AYW97789.1\|4115969_4116182_+	hypothetical protein	NA	NA	NA	NA
AYW97790.1\|4116265_4118626_+	ABC transporter permease	NA	NA	NA	NA
AYW97791.1\|4118627_4119890_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AYW97792.1\|4119891_4120560_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.3e-35	40.0
AYW97793.1\|4120569_4121880_+	radical SAM protein	NA	NA	NA	NA
AYW97794.1\|4122414_4123689_+	molybdopterin molybdotransferase	NA	NA	NA	NA
AYW98376.1\|4123693_4124461_+	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
AYW97795.1\|4124568_4125777_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
AYW97796.1\|4125855_4126503_-	hypothetical protein	NA	NA	NA	NA
AYW97797.1\|4126730_4128326_-	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	6.1e-58	28.5
AYW97798.1\|4129008_4129632_+	hypothetical protein	NA	NA	NA	NA
AYW97799.1\|4129843_4131211_-	hypothetical protein	NA	NA	NA	NA
AYW97800.1\|4131235_4131688_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AYW97801.1\|4131687_4132290_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AYW97802.1\|4132264_4133350_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AYW97803.1\|4133313_4135077_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AYW97804.1\|4135168_4135627_-	DUF943 family protein	NA	NA	NA	NA
AYW97805.1\|4135629_4136745_-	DUF3289 family protein	NA	NA	NA	NA
AYW97806.1\|4136762_4138364_-	type VI secretion system protein TssA	NA	NA	NA	NA
AYW97807.1\|4138407_4139193_-	hypothetical protein	NA	NA	NA	NA
AYW97808.1\|4139241_4142283_-	hypothetical protein	NA	NA	NA	NA
AYW97809.1\|4142364_4145787_-	type VI secretion protein VasK	NA	NA	NA	NA
AYW98377.1\|4145783_4146905_-	hypothetical protein	NA	NA	NA	NA
AYW97810.1\|4149167_4149638_-	hypothetical protein	NA	NA	NA	NA
AYW97811.1\|4149811_4151995_-	M23 family metallopeptidase	NA	NA	NA	NA
AYW97812.1\|4152010_4152271_-	DUF2345 domain-containing protein	NA	NA	NA	NA
AYW97813.1\|4152424_4153198_-	hypothetical protein	NA	NA	NA	NA
AYW97814.1\|4153194_4155495_-	M23 family metallopeptidase	NA	NA	NA	NA
AYW97815.1\|4155510_4157859_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.5e-17	32.5
AYW97816.1\|4157855_4160504_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	5.1e-94	31.6
AYW97817.1\|4160921_4161413_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
AYW97818.1\|4161416_4163153_-	OmpA family protein	NA	NA	NA	NA
AYW97819.1\|4163152_4163839_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
AYW97820.1\|4163835_4165188_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_7

4406712 : 4414968

Shigella_phage(33.33%)

plate,tail,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW98016.1\|4406712_4407132_-\|tail	phage tail protein	F1BUK2	Cronobacter_phage	8.3e-07	32.3
AYW98017.1\|4407133_4407850_-\|tail	phage tail protein	NA	NA	NA	NA
AYW98018.1\|4407946_4408549_-	DUF2313 domain-containing protein	A0A2P9JZK7	Alteromonadaceae_phage	2.0e-33	38.6
AYW98019.1\|4408545_4409682_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	3.5e-31	30.5
AYW98020.1\|4409685_4410141_-	hypothetical protein	A0A0C4UR04	Shigella_phage	4.3e-17	43.8
AYW98021.1\|4410137_4410734_-\|plate	baseplate assembly protein	NA	NA	NA	NA
AYW98022.1\|4410749_4411805_-\|tail	phage tail protein	A0A2I7S9G1	Vibrio_phage	1.3e-37	27.5
AYW98023.1\|4411801_4413208_-	hypothetical protein	Q8SBG8	Shigella_phage	2.1e-17	33.7
AYW98024.1\|4413474_4414968_-\|coat	coat protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP033708

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 6175

Enterobacteria_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW94378.1\|2163_3462_+	trimeric autotransporter adhesin YadA	Q9MCI8	Enterobacteria_phage	2.0e-11	54.2
AYW94379.1\|3464_3764_-	hypothetical protein	NA	NA	NA	NA
AYW94380.1\|3790_4060_-	hypothetical protein	NA	NA	NA	NA
AYW94381.1\|4128_4587_+	conjugal transfer protein TraI	NA	NA	NA	NA
AYW94382.1\|4758_5076_+\|transposase	transposase	NA	NA	NA	NA
AYW94383.1\|5063_5510_+	hypothetical protein	NA	NA	NA	NA
AYW94448.1\|5926_6175_+	phospholipase	A0A1B2LRT6	Wolbachia_phage	4.1e-06	47.1

DBSCAN-SWA_2

16940 : 18149

uncultured_virus(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW94392.1\|16940_18149_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.6e-50	50.3

DBSCAN-SWA_3

57282 : 59411

Yersinia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW94436.1\|57282_58449_+	plasmid-partitioning protein SopA	Q7Y3Y6	Yersinia_phage	3.5e-196	85.3
AYW94452.1\|58448_59411_+	ParB/RepB/Spo0J family plasmid partition protein	Q7Y3Y7	Yersinia_phage	3.1e-89	56.6

DBSCAN-SWA_4

63446 : 68669

Enterobacteria_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYW94441.1\|63446_64619_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	1.8e-221	95.6
AYW94442.1\|65394_65820_+	CesT family type III secretion system chaperone	NA	NA	NA	NA
AYW94443.1\|65743_65932_-	hypothetical protein	NA	NA	NA	NA
AYW94444.1\|65967_67067_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.8e-46	38.9
AYW94445.1\|67190_67496_-	hypothetical protein	NA	NA	NA	NA
AYW94446.1\|67634_68099_-	hypothetical protein	NA	NA	NA	NA
AYW94447.1\|68117_68669_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	5.9e-77	80.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP033709

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP033708

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection