CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033742	Citrobacter freundii strain FDAARGOS_550 chromosome, complete genome	0 crisprs	csa3,DinG,DEDDh,cas3,WYL	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

367101 : 451528

100

Enterobacteria_phage(28.33%)

capsid,tail,tRNA,integrase,portal,head,holin,terminase,protease

attL 400579:400606|attR 449284:449311

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYY42758.1\|367101_367797_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	A0A0R6PI74	Moraxella_phage	3.4e-05	36.9
AYY42759.1\|367855_369766_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	7.0e-93	33.1
AYY42760.1\|369906_370251_+	RidA family protein	NA	NA	NA	NA
AYY42761.1\|370257_370437_-	YoaH family protein	NA	NA	NA	NA
AYY42762.1\|370517_371882_+	aminodeoxychorismate synthase component 1	S4VNU7	Pandoravirus	8.3e-40	40.2
AYY42763.1\|371885_372464_+	CoA pyrophosphatase	NA	NA	NA	NA
AYY42764.1\|372647_374012_+	L-serine ammonia-lyase	NA	NA	NA	NA
AYY42765.1\|374142_375744_+	EAL domain-containing protein	NA	NA	NA	NA
AYY42766.1\|375750_377310_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	5.1e-41	45.4
AYY42767.1\|377769_378732_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
AYY42768.1\|378790_379591_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA
AYY42769.1\|379603_380455_+	PTS mannose transporter subunit IID	NA	NA	NA	NA
AYY42770.1\|380515_380974_+	DUF986 domain-containing protein	NA	NA	NA	NA
AYY42771.1\|381406_381973_+	manganese efflux pump MntP	NA	NA	NA	NA
AYY42772.1\|381969_382779_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA
AYY42773.1\|382842_384588_-	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA
AYY42774.1\|384807_385017_-	cold-shock protein CspC	A0A1W6JNX5	Morganella_phage	1.6e-22	78.1
AYY42775.1\|385029_385173_-	DUF2627 domain-containing protein	NA	NA	NA	NA
AYY42776.1\|385809_386094_-	hypothetical protein	NA	NA	NA	NA
AYY42777.1\|386168_386312_-	PhoP/PhoQ regulator MgrB	NA	NA	NA	NA
AYY42778.1\|386476_386716_+	hypothetical protein	NA	NA	NA	NA
AYY42779.1\|386830_387622_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
AYY42780.1\|387796_389170_+	MFS transporter	NA	NA	NA	NA
AYY42781.1\|389216_390098_-\|protease	protease HtpX	NA	NA	NA	NA
AYY42782.1\|390290_392339_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.6e-87	33.7
AYY42783.1\|392358_393045_-	RNA chaperone ProQ	NA	NA	NA	NA
AYY42784.1\|393141_393639_-	GAF domain-containing protein	NA	NA	NA	NA
AYY42785.1\|393767_395051_+	paraquat-inducible protein A	NA	NA	NA	NA
AYY42786.1\|395019_397653_+	PqiB family protein	NA	NA	NA	NA
AYY42787.1\|397732_399154_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AYY42788.1\|399251_399491_+	DUF1480 family protein	NA	NA	NA	NA
AYY42789.1\|399593_399785_+	DUF1482 family protein	NA	NA	NA	NA
AYY42790.1\|399785_400427_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	9.6e-55	50.0
400579:400606	attL	NA	NA	NA	NA
AYY42791.1\|400911_401133_+	hypothetical protein	NA	NA	NA	NA
AYY42792.1\|401119_402679_-	EAL domain-containing protein	NA	NA	NA	NA
AYY42793.1\|403448_403958_+	sugar O-acetyltransferase	NA	NA	NA	NA
AYY42794.1\|403959_404544_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	7.1e-57	55.0
AYY42795.1\|404543_407201_-	hypothetical protein	A0A0K2FIZ6	Escherichia_phage	4.7e-71	49.2
AYY42796.1\|407242_410647_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	70.4
AYY42797.1\|410719_411397_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.7e-71	71.1
AYY42798.1\|411294_412029_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.0e-116	77.4
AYY42799.1\|412040_412736_-\|tail	phage minor tail protein L	Q687F1	Enterobacteria_phage	1.0e-94	71.0
AYY42800.1\|412744_413077_-\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	5.3e-41	67.9
AYY42801.1\|413077_416380_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	65.7
AYY46876.1\|416379_416607_-	hypothetical protein	Q6UAW9	Klebsiella_phage	9.0e-24	65.3
AYY42802.1\|416627_416990_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	7.4e-28	55.9
AYY42803.1\|417052_417535_-\|tail	phage tail protein	Q6UAX0	Klebsiella_phage	4.7e-62	81.2
AYY42804.1\|417568_417970_-	hypothetical protein	Q6UAX1	Klebsiella_phage	4.9e-57	85.7
AYY42805.1\|417966_418356_-	hypothetical protein	Q6UAX2	Klebsiella_phage	8.7e-43	64.3
AYY42806.1\|418324_418675_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	3.2e-44	74.8
AYY46877.1\|418671_418989_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	2.8e-39	79.6
AYY42807.1\|418969_419347_-	hypothetical protein	Q6UAX5	Klebsiella_phage	3.2e-18	59.5
AYY42808.1\|419444_420731_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	8.8e-209	87.1
AYY42809.1\|420804_421725_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	6.0e-135	80.1
AYY42810.1\|421761_423021_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	5.6e-224	90.7
AYY42811.1\|423020_423200_-	hypothetical protein	Q6UAX9	Klebsiella_phage	3.0e-14	74.6
AYY42812.1\|423193_424909_-\|terminase	terminase large subunit	Q6UAY0	Klebsiella_phage	6.8e-289	83.0
AYY42813.1\|424945_425380_-\|terminase	terminase	Q6UAY1	Klebsiella_phage	2.3e-68	89.6
AYY42814.1\|425606_426122_+	hypothetical protein	A0A077K9U2	Edwardsiella_phage	1.4e-32	48.2
AYY42815.1\|426257_426620_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.3e-56	85.8
AYY42816.1\|426889_427063_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
AYY42817.1\|427269_427500_-	hypothetical protein	NA	NA	NA	NA
AYY46878.1\|427573_427762_-	cold-shock protein	NA	NA	NA	NA
AYY42818.1\|427772_427985_-	cold shock protein CspG	A0A1W6JNX5	Morganella_phage	2.1e-22	74.3
AYY42819.1\|428359_428905_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.0e-12	46.2
AYY42820.1\|428883_429432_-	lysozyme	K7PM52	Enterobacteria_phage	2.1e-98	94.0
AYY42821.1\|429403_429682_-\|holin	holin	K7P6H9	Enterobacteria_phage	1.5e-44	98.9
AYY42822.1\|429835_430024_-	hypothetical protein	NA	NA	NA	NA
AYY42823.1\|430078_430258_+	hypothetical protein	NA	NA	NA	NA
AYY42824.1\|431454_431670_-	RNA chaperone/antiterminator CspA	A0A1W6JNX5	Morganella_phage	5.9e-25	80.6
AYY42825.1\|431966_432179_+	cold shock-like protein CspF	NA	NA	NA	NA
AYY46879.1\|432465_432897_-	antitermination protein	Q8W638	Enterobacteria_phage	3.9e-36	59.2
AYY42826.1\|432911_433604_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.5e-64	42.0
AYY42827.1\|433600_433960_-	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	2.3e-42	63.6
AYY46880.1\|433962_434163_-	hypothetical protein	H6WRY8	Salmonella_phage	3.3e-22	69.2
AYY42828.1\|434168_434768_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	1.1e-105	95.5
AYY42829.1\|434802_435051_-	hypothetical protein	K7PHG9	Enterobacteria_phage	2.2e-39	91.5
AYY42830.1\|435161_435395_-	DinI family protein	K7PM44	Enterobacteria_phage	8.9e-27	71.4
AYY42831.1\|435670_436036_-	hypothetical protein	NA	NA	NA	NA
AYY42832.1\|436600_437056_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	9.2e-44	86.5
AYY42833.1\|437052_437364_-	hypothetical protein	NA	NA	NA	NA
AYY42834.1\|437382_438132_-	DNA replication protein DnaC	S4TNF5	Salmonella_phage	4.8e-122	86.3
AYY42835.1\|438134_439007_-	DNA-binding protein	V5URT9	Shigella_phage	4.2e-85	51.9
AYY46881.1\|439156_439696_-	regulator	K7PJT7	Enterobacteria_phage	1.3e-89	93.3
AYY42836.1\|439698_439932_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	1.2e-34	90.9
AYY42837.1\|440035_440422_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	2.9e-54	85.7
AYY42838.1\|440572_441046_+	hypothetical protein	K7PLT9	Enterobacteria_phage	2.3e-53	59.1
AYY42839.1\|441042_441975_+	hypothetical protein	K7PGT0	Enterobacteria_phage	1.3e-87	53.2
AYY42840.1\|442007_442214_-	hypothetical protein	K7P7I0	Enterobacteria_phage	1.4e-15	66.2
AYY42841.1\|442574_442781_+	cell division inhibitor protein	K7PM31	Enterobacteria_phage	4.3e-33	98.5
AYY42842.1\|443040_443328_+	DNA breaking-rejoining protein	H6WRX2	Salmonella_phage	6.2e-38	77.9
AYY42843.1\|443454_446439_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	8.1e-298	59.6
AYY42844.1\|446450_447536_+	enterohemolysin	K7PKR8	Enterobacteria_phage	8.7e-125	63.6
AYY42845.1\|447574_447817_+	DUF4060 family protein	K7PHF4	Enterobacteria_phage	3.0e-33	88.6
AYY42846.1\|447881_448154_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.5e-28	63.3
AYY42847.1\|448122_449208_+\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	4.8e-147	68.4
AYY42848.1\|449544_449883_-	DUF2511 domain-containing protein	NA	NA	NA	NA
449284:449311	attR	NA	NA	NA	NA
AYY42849.1\|449903_450776_-	copper resistance D family protein	NA	NA	NA	NA
AYY42850.1\|450779_451154_-	CopC domain-containing protein YobA	NA	NA	NA	NA
AYY42851.1\|451297_451528_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.0e-14	60.3

DBSCAN-SWA_2

629109 : 646818

Prochlorococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYY43038.1\|629109_630114_+	NAD-dependent epimerase	A0A0K0KW07	Prochlorococcus_phage	3.6e-16	31.3
AYY43039.1\|630172_631339_-	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	1.1e-114	55.0
AYY43040.1\|631537_632944_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.8e-37	28.5
AYY43041.1\|633071_633968_-	alpha-1,2-fucosyltransferase	A0A2H4UUT1	Bodo_saltans_virus	5.7e-29	31.7
AYY43042.1\|633979_634717_-	glycosyltransferase	F2Y1U7	Organic_Lake_phycodnavirus	1.8e-09	31.7
AYY43043.1\|634719_635883_-	oligosaccharide repeat unit polymerase	NA	NA	NA	NA
AYY43044.1\|635885_636539_-	antibiotic acetyltransferase	M1GXE1	Acanthocystis_turfacea_Chlorella_virus	6.4e-06	28.3
AYY43045.1\|636539_637808_-	O90/O127 family O-antigen flippase	NA	NA	NA	NA
AYY43046.1\|637820_639197_-	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	8.4e-32	27.1
AYY43047.1\|639200_640649_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.4e-56	32.4
AYY43048.1\|640641_641142_-	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA
AYY43049.1\|641144_642110_-	GDP-L-fucose synthase	D1LW79	Prochlorococcus_phage	9.3e-86	50.8
AYY43050.1\|642113_643232_-	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	1.5e-132	66.9
AYY43051.1\|643242_644271_-	glycosyltransferase	NA	NA	NA	NA
AYY43052.1\|644692_645586_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	6.2e-44	40.9
AYY43053.1\|645822_646818_-	SDR family oxidoreductase	A0A0K1L6Z1	Scale_drop_disease_virus	5.5e-09	28.1

DBSCAN-SWA_3

690211 : 699789

Bacillus_phage(28.57%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYY43084.1\|690211_691615_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	5.0e-32	29.2
AYY43085.1\|691611_692334_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	1.2e-29	32.7
AYY43086.1\|692469_692802_+	DUF1508 domain-containing protein	NA	NA	NA	NA
AYY43087.1\|692961_694323_+	U32 family peptidase	Q6DW11	Phage_TP	4.1e-204	92.9
AYY43088.1\|694592_696869_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.4e-164	42.1
AYY43089.1\|696899_697220_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.5e-13	45.7
AYY43090.1\|697543_697768_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	3.6e-17	62.7
AYY43091.1\|697842_699789_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.6e-39	41.3

DBSCAN-SWA_4

747911 : 756330

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYY43137.1\|747911_749945_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	4.0e-54	27.6
AYY43138.1\|750151_750610_+	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	5.1e-50	68.0
AYY46891.1\|750652_751123_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	4.9e-64	76.9
AYY43139.1\|751169_751889_-	two-component system response regulator YehT	NA	NA	NA	NA
AYY43140.1\|751885_753571_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.7e-281	91.6
AYY43141.1\|753796_754528_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.8e-105	93.5
AYY43142.1\|754579_754687_+	protein YohO	NA	NA	NA	NA
AYY43143.1\|754667_755399_-	ABC transporter permease	NA	NA	NA	NA
AYY43144.1\|755382_756330_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	1.7e-07	25.3

DBSCAN-SWA_5

1196459 : 1298644

109

Escherichia_phage(16.07%)

capsid,tail,tRNA,portal,head,holin,terminase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYY43525.1\|1196459_1197191_-\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
AYY43526.1\|1197309_1198113_+	inositol-1-monophosphatase	NA	NA	NA	NA
AYY43527.1\|1198185_1199166_-	nickel/cobalt transporter	NA	NA	NA	NA
AYY43528.1\|1199156_1199795_-	DUF1007 family protein	NA	NA	NA	NA
AYY43529.1\|1200215_1201199_+	autoinducer 2 ABC transporter substrate-binding protein	NA	NA	NA	NA
AYY43530.1\|1201302_1202811_+	sugar ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.6e-15	26.4
AYY43531.1\|1202803_1203793_+	ABC transporter permease	NA	NA	NA	NA
AYY43532.1\|1203794_1204748_+	ABC transporter permease	NA	NA	NA	NA
AYY43533.1\|1204765_1206403_+	ribulokinase	NA	NA	NA	NA
AYY43534.1\|1206399_1206999_+	SIS domain-containing protein	NA	NA	NA	NA
AYY43535.1\|1206975_1207239_-	hypothetical protein	NA	NA	NA	NA
AYY43536.1\|1207323_1208601_+	stationary phase inducible protein CsiE	NA	NA	NA	NA
AYY43537.1\|1208595_1209744_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA
AYY43538.1\|1209832_1210675_-	aldose 1-epimerase	NA	NA	NA	NA
AYY43539.1\|1210674_1212114_-	MFS transporter	NA	NA	NA	NA
AYY43540.1\|1212187_1215454_-	DUF5107 domain-containing protein	NA	NA	NA	NA
AYY43541.1\|1215568_1216762_+	ROK family transcriptional regulator	NA	NA	NA	NA
AYY43542.1\|1216765_1217659_-	DNA-binding transcriptional regulator HcaR	NA	NA	NA	NA
AYY43543.1\|1217794_1219156_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
AYY43544.1\|1219152_1219671_+	3-phenylpropionate/cinnamic acid dioxygenase subunit beta	NA	NA	NA	NA
AYY43545.1\|1219670_1219991_+	bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit	NA	NA	NA	NA
AYY43546.1\|1219987_1220800_+	3-(cis-5,6-dihydroxycyclohexa-1, 3-dien-1-yl)propanoate dehydrogenase	NA	NA	NA	NA
AYY43547.1\|1220809_1222012_+	phenylpropionate dioxygenase ferredoxin reductase subunit	NA	NA	NA	NA
AYY43548.1\|1222104_1223358_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	3.9e-100	53.4
AYY43549.1\|1223684_1224875_+	NO-inducible flavohemoprotein	NA	NA	NA	NA
AYY43550.1\|1224976_1225315_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
AYY43551.1\|1225375_1226713_-	two-component system response regulator GlrR	W8CYM9	Bacillus_phage	1.4e-10	34.1
AYY43552.1\|1226709_1227453_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA
AYY46910.1\|1227475_1228906_-	two component system sensor histidine kinase QseE/GlrK	W8CYF6	Bacillus_phage	1.6e-12	25.6
AYY43553.1\|1229541_1233429_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	1.9e-129	58.7
AYY43554.1\|1233685_1235236_+	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA
AYY43555.1\|1235248_1235785_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
AYY43556.1\|1235802_1236438_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
AYY43557.1\|1236441_1237806_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
AYY43558.1\|1237815_1238709_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
AYY46911.1\|1238826_1239675_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AYY43559.1\|1239919_1240309_-	LexA family transcriptional regulator	Q1MVE7	Enterobacteria_phage	8.7e-51	72.1
AYY43560.1\|1240628_1240871_+	DinI family protein	Q6UAW0	Klebsiella_phage	2.6e-29	75.9
AYY43561.1\|1241140_1241617_+	DUF4065 domain-containing protein	D0UIM3	Aggregatibacter_phage	1.2e-22	42.4
AYY43562.1\|1242240_1243605_-\|tail	phage tail protein	A0A1V0E5M2	Salmonella_phage	1.1e-108	51.1
AYY43563.1\|1243667_1243904_-	cor protein	K7PLZ0	Enterobacterial_phage	1.5e-18	57.1
AYY43564.1\|1244012_1244687_-	hypothetical protein	O64337	Escherichia_phage	7.7e-55	52.4
AYY43565.1\|1244687_1245005_-	hypothetical protein	C0LP47	Escherichia_virus	3.1e-22	55.0
AYY43566.1\|1244997_1248180_-	host specificity protein J	O64335	Escherichia_phage	0.0e+00	62.9
AYY43567.1\|1248233_1248821_-\|tail	tail assembly protein	A0A1P8DTG7	Proteus_phage	1.4e-47	47.9
AYY43568.1\|1248820_1249531_-	peptidase P60	F1C573	Cronobacter_phage	3.5e-98	71.1
AYY43569.1\|1249533_1250292_-\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	1.1e-94	63.6
AYY43570.1\|1250288_1250627_-\|tail	phage tail protein	K7PKL8	Enterobacterial_phage	6.6e-39	62.5
AYY43571.1\|1250629_1253932_-\|tail	phage tail tape measure protein	K7P7L6	Enterobacteria_phage	0.0e+00	84.7
AYY43572.1\|1253984_1254284_-	hypothetical protein	NA	NA	NA	NA
AYY43573.1\|1254336_1254615_-	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	4.9e-40	88.0
AYY43574.1\|1254623_1255013_-\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	2.8e-57	84.5
AYY43575.1\|1255040_1255745_-\|tail	phage tail protein	K7PHL2	Enterobacterial_phage	9.7e-93	73.9
AYY43576.1\|1255802_1256150_-	DUF3168 domain-containing protein	A0A220NRP0	Escherichia_phage	2.4e-44	74.8
AYY43577.1\|1256146_1256596_-	HK97 gp10 family phage protein	S4TR46	Salmonella_phage	8.4e-66	85.9
AYY43578.1\|1256592_1256931_-\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.9e-38	69.6
AYY43579.1\|1256940_1257264_-\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	3.9e-20	48.0
AYY43580.1\|1257583_1258792_-\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	4.7e-188	82.9
AYY43581.1\|1258805_1259459_-\|head,protease	HK97 family phage prohead protease	Q8W628	Enterobacteria_phage	2.3e-104	85.5
AYY43582.1\|1259445_1260675_-\|portal	phage portal protein	U5P411	Shigella_phage	9.7e-205	82.7
AYY43583.1\|1260674_1260860_-	hypothetical protein	A0A1B5FP99	Escherichia_phage	2.9e-12	57.6
AYY43584.1\|1260870_1262628_-\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	89.4
AYY43585.1\|1262627_1263101_-\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	1.3e-77	89.2
AYY43586.1\|1263257_1263608_-	HNH endonuclease	K7PHK9	Enterobacteria_phage	2.3e-50	78.4
AYY43587.1\|1264011_1264272_+	hypothetical protein	NA	NA	NA	NA
AYY43588.1\|1264318_1264525_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	4.3e-17	67.7
AYY43589.1\|1264481_1264751_-	hypothetical protein	G8C7W1	Escherichia_phage	1.3e-21	70.1
AYY43590.1\|1264758_1265385_-	glycoside hydrolase family 19 protein	F1C591	Cronobacter_phage	2.1e-86	73.4
AYY43591.1\|1265540_1265822_-\|holin	phage holin family protein	A0A0U2SHD1	Escherichia_phage	7.0e-18	47.1
AYY43592.1\|1265808_1266195_-	hypothetical protein	A0A192Y8P2	Salmonella_phage	5.2e-56	91.4
AYY43593.1\|1266404_1266815_-	antitermination protein	A0A088CD47	Shigella_phage	3.1e-51	77.3
AYY43594.1\|1266804_1267449_-	DNA methyltransferase	G8C7S6	Escherichia_phage	8.4e-83	69.6
AYY43595.1\|1267445_1268090_-	NinG family protein	A0A1W6JNX3	Morganella_phage	4.1e-45	60.7
AYY43596.1\|1268059_1269031_-	DNA primase	A0A1B5FPA8	Escherichia_phage	1.9e-107	61.2
AYY43597.1\|1269027_1270557_-	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	6.4e-206	67.3
AYY43598.1\|1270549_1270825_-	hypothetical protein	A0A1P8VVT6	Streptococcus_phage	3.9e-05	42.3
AYY43599.1\|1270985_1271264_-	hypothetical protein	NA	NA	NA	NA
AYY43600.1\|1271304_1271808_-	hypothetical protein	A0A0P0ZE62	Stx2-converting_phage	2.9e-38	50.3
AYY43601.1\|1271877_1272078_-	Cro/Cl family transcriptional regulator	K7PLQ6	Enterobacteria_phage	2.6e-19	75.8
AYY43602.1\|1272186_1272897_+	LexA family transcriptional regulator	K7P8B2	Enterobacteria_phage	9.5e-88	67.2
AYY43603.1\|1273540_1273984_-	hypothetical protein	U5P096	Shigella_phage	2.8e-13	33.9
AYY43604.1\|1274512_1274872_+	hypothetical protein	I6NMK2	Burkholderia_virus	5.4e-07	35.6
AYY43605.1\|1274915_1275728_+	DUF2303 family protein	NA	NA	NA	NA
AYY43606.1\|1275805_1276603_+	DNA-binding protein	A0A2H4J902	uncultured_Caudovirales_phage	2.8e-72	55.1
AYY43607.1\|1276589_1276811_+	hypothetical protein	NA	NA	NA	NA
AYY43608.1\|1277371_1277572_+	hypothetical protein	NA	NA	NA	NA
AYY46912.1\|1278125_1278698_+	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	1.2e-69	66.7
AYY43609.1\|1278699_1278900_+	DNA-binding protein	NA	NA	NA	NA
AYY43610.1\|1278946_1279327_-	hypothetical protein	NA	NA	NA	NA
AYY43611.1\|1279428_1280826_-	recombinase	NA	NA	NA	NA
AYY43612.1\|1281040_1281301_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.0e-18	55.8
AYY43613.1\|1281330_1281711_-	holo-ACP synthase	NA	NA	NA	NA
AYY43614.1\|1281710_1282442_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
AYY46913.1\|1282453_1283182_-	DNA repair protein RecO	NA	NA	NA	NA
AYY43615.1\|1283212_1284118_-	GTPase Era	NA	NA	NA	NA
AYY43616.1\|1284114_1284795_-	ribonuclease 3	A0A2K9L5P0	Tupanvirus	1.6e-20	31.8
AYY43617.1\|1285064_1286039_-	signal peptidase I	NA	NA	NA	NA
AYY43618.1\|1286054_1287854_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	3.8e-24	25.1
AYY43619.1\|1288124_1288589_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
AYY43620.1\|1288585_1289542_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
AYY43621.1\|1289541_1290192_-	anti-sigma-E factor RseA	NA	NA	NA	NA
AYY43622.1\|1290223_1290799_-	ECF RNA polymerase sigma-E factor	NA	NA	NA	NA
AYY43623.1\|1290795_1290960_-	rpoE leader peptide RseD	NA	NA	NA	NA
AYY43624.1\|1291223_1292846_+	L-aspartate oxidase	NA	NA	NA	NA
AYY43625.1\|1292830_1293568_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	NA	NA	NA	NA
AYY43626.1\|1293698_1295027_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	2.5e-41	29.1
AYY43627.1\|1296140_1296524_-	autonomous glycyl radical cofactor GrcA	A0A1W5N098	Cronobacter_phage	3.6e-33	70.9
AYY43628.1\|1296841_1297531_+	uracil-DNA glycosylase	A0A076JX67	Equid_alphaherpesvirus	7.9e-55	49.3
AYY43629.1\|1297564_1298644_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_6

1702730 : 1750025

Staphylococcus_phage(25.0%)

tRNA,protease,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYY43959.1\|1702730_1703489_+\|protease	metalloprotease	NA	NA	NA	NA
AYY43960.1\|1703685_1704606_-	agmatinase	NA	NA	NA	NA
AYY43961.1\|1704843_1706820_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
AYY43962.1\|1706828_1706960_-	virulence promoting factor	NA	NA	NA	NA
AYY43963.1\|1707607_1708762_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	5.3e-128	63.2
AYY43964.1\|1709161_1710556_+	sugar porter family MFS transporter	O13311	Aichi_virus	1.4e-26	25.5
AYY43965.1\|1710633_1711131_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
AYY43966.1\|1711225_1711933_+	deoxyribonuclease I	NA	NA	NA	NA
AYY43967.1\|1712007_1712739_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
AYY43968.1\|1712758_1713706_+	glutathione synthase	NA	NA	NA	NA
AYY43969.1\|1713809_1714445_+	YqgE/AlgH family protein	NA	NA	NA	NA
AYY46931.1\|1714444_1714861_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
AYY43970.1\|1714857_1715838_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
AYY43971.1\|1715855_1716560_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
AYY43972.1\|1716578_1717145_+	YggT family protein	NA	NA	NA	NA
AYY43973.1\|1717141_1717432_+	YggU family protein	NA	NA	NA	NA
AYY43974.1\|1717439_1718033_+	XTP/dITP diphosphatase	NA	NA	NA	NA
AYY43975.1\|1718025_1719162_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
AYY43976.1\|1719277_1720324_-	L-asparaginase 2	NA	NA	NA	NA
AYY43977.1\|1720512_1721232_-	DUF2884 family protein	NA	NA	NA	NA
AYY43978.1\|1721281_1721608_-	DUF469 domain-containing protein	NA	NA	NA	NA
AYY43979.1\|1721607_1722327_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
AYY46932.1\|1722487_1723540_+	adenine DNA glycosylase	NA	NA	NA	NA
AYY43980.1\|1723567_1723837_+	oxidative damage protection protein	NA	NA	NA	NA
AYY43981.1\|1723923_1725009_+	membrane-bound lytic murein transglycosylase MltC	A0A0H3V0Q1	Geobacillus_virus	4.5e-12	39.0
AYY43982.1\|1725219_1726476_+	nucleoside permease	NA	NA	NA	NA
AYY43983.1\|1726528_1728664_-	ornithine decarboxylase	NA	NA	NA	NA
AYY43984.1\|1729132_1729840_+	DUF554 domain-containing protein	NA	NA	NA	NA
AYY43985.1\|1731355_1732213_+	hypothetical protein	NA	NA	NA	NA
AYY43986.1\|1732413_1732893_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
AYY43987.1\|1732895_1734263_-	hypothetical protein	NA	NA	NA	NA
AYY43988.1\|1734273_1737798_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
AYY43989.1\|1737821_1739243_-	type VI secretion system protein TssA	NA	NA	NA	NA
AYY43990.1\|1739247_1740003_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
AYY43991.1\|1739999_1742735_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	8.2e-87	31.7
AYY43992.1\|1742743_1743553_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
AYY43993.1\|1743557_1744901_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AYY43994.1\|1744903_1745437_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AYY46933.1\|1745433_1746732_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
AYY43995.1\|1746748_1747795_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AYY43996.1\|1747761_1749597_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AYY43997.1\|1749599_1750025_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_7

4562933 : 4616887

Salmonella_phage(14.89%)

tail,tRNA,portal,protease,lysis,plate,holin,terminase,integrase

attL 4559877:4559894|attR 4584296:4584313

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4559877:4559894	attL	NA	NA	NA	NA
AYY46473.1\|4562933_4564040_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
AYY46474.1\|4564093_4564555_-	NUDIX hydrolase	NA	NA	NA	NA
AYY46475.1\|4564564_4565497_-	hypothetical protein	NA	NA	NA	NA
AYY46476.1\|4565531_4566149_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
AYY46477.1\|4566351_4567602_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	9.4e-22	94.4
AYY46478.1\|4567781_4568597_+	hypothetical protein	NA	NA	NA	NA
AYY46479.1\|4568599_4569028_+	hypothetical protein	NA	NA	NA	NA
AYY46480.1\|4569035_4570166_-\|integrase	integrase	Q77Z04	Phage_21	7.2e-122	60.2
AYY46481.1\|4570146_4570392_-	excisionase	NA	NA	NA	NA
AYY46482.1\|4570771_4571011_+	hypothetical protein	NA	NA	NA	NA
AYY46483.1\|4570981_4571230_-	hypothetical protein	I6PDF6	Cronobacter_phage	3.7e-07	62.2
AYY46484.1\|4571418_4572045_-	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	3.2e-47	49.3
AYY46485.1\|4572147_4572375_+	cell division protein	NA	NA	NA	NA
AYY46486.1\|4572385_4572937_+	DNA-binding protein	A0A1C9II13	Salmonella_phage	1.0e-65	68.4
AYY46487.1\|4573109_4573289_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	1.0e-14	73.1
AYY46488.1\|4573278_4574136_+	GntR family transcriptional regulator	A0A1C9IHW0	Salmonella_phage	3.9e-59	95.7
AYY46489.1\|4574132_4575014_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	1.0e-163	94.5
AYY46490.1\|4575024_4576959_+	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	1.0e-200	53.6
AYY46491.1\|4576955_4577342_+	RusA family crossover junction endodeoxyribonuclease	A0A192Y8N5	Salmonella_phage	4.1e-61	89.1
AYY46492.1\|4577355_4578042_+	phage regulatory protein/antirepressor Ant	G0ZND1	Cronobacter_phage	9.9e-58	53.8
AYY46493.1\|4578038_4579034_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.2e-143	69.6
AYY46494.1\|4579055_4579745_+	antitermination protein	NA	NA	NA	NA
AYY46495.1\|4579895_4580558_+	hypothetical protein	NA	NA	NA	NA
AYY46496.1\|4580731_4581784_+	site-specific DNA-methyltransferase	Q8SBE2	Shigella_phage	1.0e-170	80.4
AYY47030.1\|4581928_4582207_+\|holin	holin	K7PGZ9	Enterobacteria_phage	4.3e-44	95.7
AYY46497.1\|4582178_4582727_+	lysozyme	K7PM52	Enterobacteria_phage	6.6e-97	91.8
AYY46498.1\|4582723_4583185_+\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	7.2e-36	56.6
AYY46499.1\|4583460_4583979_+	Rha family transcriptional regulator	Q38450	Enterobacteria_phage	6.9e-88	92.4
AYY46500.1\|4584366_4584651_+	hypothetical protein	NA	NA	NA	NA
4584296:4584313	attR	NA	NA	NA	NA
AYY47031.1\|4584879_4585386_+	DUF1441 family protein	K7PJY2	Enterobacterial_phage	1.4e-48	64.3
AYY46501.1\|4585389_4587507_+\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	5.2e-307	70.6
AYY46502.1\|4587503_4587719_+	hypothetical protein	NA	NA	NA	NA
AYY46503.1\|4587727_4589239_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	4.9e-150	54.6
AYY46504.1\|4589195_4591298_+\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	8.8e-198	52.1
AYY46505.1\|4591370_4591706_+	DUF2190 family protein	A0A2K9V343	Faecalibacterium_phage	2.8e-05	31.1
AYY46506.1\|4591705_4592062_+	hypothetical protein	NA	NA	NA	NA
AYY46507.1\|4592063_4592720_+	hypothetical protein	D5LGZ7	Escherichia_phage	9.0e-16	35.3
AYY46508.1\|4592731_4593286_+	hypothetical protein	NA	NA	NA	NA
AYY46509.1\|4593278_4593896_+\|plate	phage baseplate assembly protein V	Q9JML8	Wolbachia_phage	3.0e-13	36.2
AYY46510.1\|4593934_4595404_+\|tail	phage tail protein	R9TMQ0	Vibrio_phage	1.9e-74	37.1
AYY46511.1\|4595400_4595907_+\|tail	phage tail protein	NA	NA	NA	NA
AYY46512.1\|4595965_4596265_+\|tail	phage tail assembly protein	Q75QK8	Wolbachia_phage	4.2e-05	31.6
AYY46513.1\|4596367_4598293_+	hypothetical protein	A0A2I7R3J9	Vibrio_phage	8.2e-25	30.7
AYY46514.1\|4598289_4598760_+\|tail	phage tail protein	R9TMP6	Vibrio_phage	3.8e-24	45.0
AYY46515.1\|4598734_4598950_+\|tail	phage tail protein	R9TR63	Vibrio_phage	9.7e-12	51.4
AYY46516.1\|4598951_4600070_+	late control protein D	R9TNM7	Vibrio_phage	9.6e-34	33.1
AYY46517.1\|4600109_4600463_+\|plate	baseplate assembly protein	R9TRM1	Vibrio_phage	6.5e-21	54.1
AYY46518.1\|4600446_4601367_+\|plate	baseplate assembly protein	A0A193GYM8	Enterobacter_phage	1.4e-62	48.3
AYY46519.1\|4601356_4601920_+\|tail	phage tail protein I	A0A0F7LDF3	Escherichia_phage	1.8e-25	40.3
AYY46520.1\|4601912_4603529_+\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	4.5e-69	40.0
AYY46521.1\|4603528_4604110_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.4e-57	58.1
AYY46522.1\|4604425_4604776_+	hypothetical protein	NA	NA	NA	NA
AYY46523.1\|4605629_4606673_-	hypothetical protein	NA	NA	NA	NA
AYY46524.1\|4606910_4607153_-	DinI family protein	Q6UAW0	Klebsiella_phage	2.2e-28	75.3
AYY47032.1\|4607230_4607650_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	4.7e-34	56.5
AYY46525.1\|4607651_4608920_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.0e-204	81.3
AYY46526.1\|4608912_4609584_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	8.4e-78	58.6
AYY46527.1\|4609903_4610485_-	hypothetical protein	NA	NA	NA	NA
AYY46528.1\|4610961_4611114_+	isocitrate dehydrogenase	Q77Z09	Phage_21	8.1e-21	96.0
AYY46529.1\|4611249_4611759_-	DedA family protein	NA	NA	NA	NA
AYY46530.1\|4611933_4612176_-	DinI family protein	Q6UAW0	Klebsiella_phage	1.5e-29	77.9
AYY46531.1\|4612563_4613262_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	3.8e-89	68.1
AYY47033.1\|4613317_4613668_+	ArsR family transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	2.1e-19	46.3
AYY46532.1\|4613712_4614990_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	5.2e-161	69.5
AYY46533.1\|4615002_4615428_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	7.3e-51	70.7
AYY46534.1\|4615671_4615884_+	isocitrate dehydrogenase	Q77Z09	Phage_21	4.6e-22	90.7
AYY46535.1\|4616401_4616887_+	hypothetical protein	A0A1B0VBR9	Salmonella_phage	3.0e-08	34.9

DBSCAN-SWA_8

4711429 : 4721467

Tupanvirus(14.29%)