CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033808	Streptococcus sp. FDAARGOS_522 chromosome, complete genome	0 crisprs	csm6,csn2,cas2,cas1,cas9,DinG,cas3,csa3,DEDDh	0	0	4	1

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

877626 : 955532

Streptococcus_phage(96.61%)

capsid,protease,head,tail,holin,integrase,terminase

attL 899931:899947|attR 953617:953633

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYY64137.1\|877626_879132_-	serine/threonine protein kinase	A0A0G2YBE6	Acanthamoeba_polyphaga_mimivirus	3.8e-09	25.1
AYY64138.1\|879145_879919_-	hypothetical protein	NA	NA	NA	NA
AYY64139.1\|879988_881293_-	recombinase family protein	E4ZFN9	Streptococcus_phage	1.1e-198	80.0
AYY64140.1\|881237_882479_-	recombinase family protein	A0A1X9I6J1	Streptococcus_phage	7.8e-170	69.2
AYY64141.1\|882786_882894_-\|holin	putative holin-like toxin	NA	NA	NA	NA
AYY64142.1\|883029_884436_-	LysM peptidoglycan-binding domain-containing protein	A0A1B0RXL4	Streptococcus_phage	2.4e-106	63.1
AYY64143.1\|884437_884836_-\|holin	holin	D0R0E9	Streptococcus_phage	5.1e-38	60.8
AYY64144.1\|884853_886710_-	hypothetical protein	Q6DMS9	Streptococcus_phage	1.0e-258	73.1
AYY64145.1\|886722_889638_-	carbamoylsarcosine amidase	Q6DMT0	Streptococcus_phage	0.0e+00	64.1
AYY64146.1\|889637_890363_-\|tail	phage tail protein	M1Q107	Streptococcus_phage	1.6e-82	61.1
AYY64147.1\|890359_893479_-\|tail	phage tail tape measure protein	Q6DMT2	Streptococcus_phage	5.8e-254	77.1
AYY64148.1\|893773_894193_-	hypothetical protein	A0A1X9I691	Streptococcus_phage	9.7e-56	76.3
AYY64149.1\|894204_894774_-\|tail	phage tail protein	A0A1B0RXE2	Streptococcus_phage	3.6e-98	95.2
AYY64150.1\|894776_895103_-	hypothetical protein	M1Q1Z4	Streptococcus_phage	2.4e-38	68.5
AYY64151.1\|895111_895480_-	HK97 gp10 family phage protein	Q6DMT7	Streptococcus_phage	2.9e-32	61.2
AYY64152.1\|895472_895811_-\|head,tail	head-tail adaptor protein	A0A1B0RXE4	Streptococcus_phage	4.7e-37	68.8
AYY64153.1\|895810_896068_-\|head,tail	phage gp6-like head-tail connector protein	D0R0D7	Streptococcus_phage	9.5e-30	77.6
AYY64154.1\|896064_897273_-\|capsid	phage major capsid protein	M1Q1R5	Streptococcus_phage	4.0e-211	90.8
AYY64155.1\|897286_897985_-\|protease	Clp protease ClpP	A0A1B0RXE1	Streptococcus_phage	3.8e-105	83.2
AYY64156.1\|899333_899660_-	hypothetical protein	NA	NA	NA	NA
AYY64157.1\|899685_900057_-	type II toxin-antitoxin system death-on-curing family toxin	A0A1X9I6C0	Streptococcus_phage	1.2e-57	89.4
899931:899947	attL	NA	NA	NA	NA
AYY64158.1\|900053_900311_-	type II toxin-antitoxin system Phd/YefM family antitoxin	E4ZFM1	Streptococcus_phage	1.2e-35	95.3
AYY64159.1\|900381_901974_-\|terminase	terminase large subunit	A0A1B0RXJ8	Streptococcus_phage	2.5e-306	95.5
AYY64160.1\|901970_902444_-\|terminase	phage terminase small subunit P27 family	A0A1X9I6K0	Streptococcus_phage	2.3e-85	96.8
AYY64161.1\|902495_902945_-	DUF4314 domain-containing protein	E4ZFL7	Streptococcus_phage	1.8e-15	63.6
AYY64162.1\|903287_904541_-	DNA (cytosine-5-)-methyltransferase	M1NSK8	Streptococcus_phage	3.6e-231	93.5
AYY64163.1\|904537_905794_-	DNA modification methylase	E4ZFL4	Streptococcus_phage	3.7e-220	88.7
AYY64164.1\|905765_906221_-	helix-turn-helix domain-containing protein	A0A1B0RXC6	Streptococcus_phage	5.4e-44	51.0
AYY64165.1\|906509_906875_-	HNH endonuclease	E4ZFL2	Streptococcus_phage	3.9e-61	86.7
AYY64166.1\|906876_907914_-	methionine adenosyltransferase	E4ZFL0	Streptococcus_phage	8.8e-167	84.3
AYY65328.1\|907961_908144_-	hypothetical protein	A0A1B0RXC3	Streptococcus_phage	2.0e-21	88.3
AYY64167.1\|908323_908833_-	hypothetical protein	Q6DMV6	Streptococcus_phage	1.4e-45	54.5
AYY64168.1\|908825_910202_-	DEAD/DEAH box helicase	A0A1X9I6B0	Streptococcus_phage	5.3e-228	84.5
AYY64169.1\|910182_910464_-	VRR-NUC domain-containing protein	M1PFY8	Streptococcus_phage	5.5e-39	82.8
AYY64170.1\|910814_913094_-	DNA primase	M1NSF0	Streptococcus_phage	0.0e+00	80.7
AYY64171.1\|913490_913814_+	hypothetical protein	A0A1B0RXB7	Streptococcus_phage	2.0e-32	71.2
AYY64172.1\|913806_914928_+	DUF2800 domain-containing protein	A0A1X9I6D8	Streptococcus_phage	8.0e-198	88.5
AYY64173.1\|914932_915496_+	DUF2815 family protein	A0A1B0RXA9	Streptococcus_phage	3.3e-91	93.4
AYY64174.1\|915726_917682_+	hypothetical protein	D0R0B0	Streptococcus_phage	0.0e+00	83.6
AYY64175.1\|917720_918290_-	hypothetical protein	A0A1B0RXB3	Streptococcus_phage	1.1e-86	81.0
AYY64176.1\|918698_920567_-	XRE family transcriptional regulator	E4ZFJ9	Streptococcus_phage	2.0e-302	80.9
AYY64177.1\|928744_929275_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AYY64178.1\|929759_929879_+	hypothetical protein	NA	NA	NA	NA
AYY64179.1\|929901_930216_+	DUF961 domain-containing protein	A0A1S5SF38	Streptococcus_phage	5.2e-54	100.0
AYY64180.1\|930231_930618_+	DUF961 domain-containing protein	A0A1S5SF96	Streptococcus_phage	3.0e-64	100.0
AYY64181.1\|930646_932032_+	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	1.1e-265	100.0
AYY64182.1\|932327_933806_-	Lsa family ABC-F type ribosomal protection protein	Q6DMX7	Streptococcus_phage	1.6e-36	26.7
AYY64183.1\|934233_934533_-	XRE family transcriptional regulator	NA	NA	NA	NA
AYY64184.1\|934781_934985_+	hypothetical protein	NA	NA	NA	NA
AYY64185.1\|935191_936184_+	replication initiation protein	NA	NA	NA	NA
AYY64186.1\|936180_936384_+	DUF3173 domain-containing protein	NA	NA	NA	NA
AYY64187.1\|936370_937510_+\|integrase	site-specific integrase	Q8SBN2	Clostridium_phage	5.5e-29	30.3
AYY65329.1\|937588_937708_+	conjugal transfer protein	NA	NA	NA	NA
AYY64188.1\|937730_938936_+	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	2.8e-233	100.0
AYY64189.1\|938978_939200_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
AYY64190.1\|939316_939814_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
AYY64191.1\|939788_940295_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
AYY64192.1\|940278_942726_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	100.0
AYY64193.1\|942728_944906_+	YtxH domain-containing protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	100.0
AYY64194.1\|944902_945904_+	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	5.0e-191	100.0
AYY64195.1\|945900_946833_+	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	3.1e-171	99.4
AYY64196.1\|947107_947194_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
AYY64197.1\|947209_949129_+	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	99.5
AYY64198.1\|949229_949415_+	conjugal transfer protein	D0R0F6	Streptococcus_phage	3.9e-17	67.9
AYY64199.1\|949474_949828_-	XRE family transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
AYY65330.1\|950032_950104_+	hypothetical protein	NA	NA	NA	NA
AYY64200.1\|950332_950755_+	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	2.5e-72	100.0
AYY64201.1\|950751_950982_+	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
AYY64202.1\|951207_951459_-	hypothetical protein	NA	NA	NA	NA
AYY64203.1\|951442_951646_+	excisionase	A0A1S5SF07	Streptococcus_phage	4.0e-31	100.0
AYY64204.1\|951727_952945_+\|integrase	site-specific integrase	A0A1S5SEW7	Streptococcus_phage	3.7e-233	100.0
AYY64205.1\|953136_953655_-	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
953617:953633	attR	NA	NA	NA	NA
AYY64206.1\|954176_955532_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	D0R096	Streptococcus_phage	2.3e-191	73.4

DBSCAN-SWA_2

1497334 : 1509399

Synechococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYY64727.1\|1497334_1498639_-	LysM peptidoglycan-binding domain-containing protein	A0A2D1GNZ3	Streptomyces_phage	3.7e-05	40.5
AYY64728.1\|1498785_1499685_-	zoocin A	A0A221J6U0	Arthrobacter_phage	4.1e-19	45.9
AYY64729.1\|1499877_1501425_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	Q58MG4	Prochlorococcus_phage	3.9e-78	49.2
AYY64730.1\|1501444_1502197_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AYY64731.1\|1502219_1502768_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.4e-25	35.6
AYY64732.1\|1502935_1503958_-	phosphoribosylformylglycinamidine cyclo-ligase	R9TMC7	Synechococcus_phage	1.1e-63	42.7
AYY64733.1\|1503985_1505440_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.7e-54	32.7
AYY64734.1\|1505673_1509399_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.9e-38	25.9

DBSCAN-SWA_3

1591214 : 1600708

Streptococcus_phage(80.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYY64796.1\|1591214_1591802_-	helix-turn-helix domain-containing protein	A0A1X9I5U6	Streptococcus_phage	4.0e-15	37.5
AYY64797.1\|1591956_1592142_+	hypothetical protein	A0A1X9I5U7	Streptococcus_phage	6.2e-07	54.8
AYY64798.1\|1592157_1592760_+	phage repressor protein	A0A1W6JPC3	Staphylococcus_phage	6.7e-42	46.7
AYY64799.1\|1592995_1593634_+	hypothetical protein	NA	NA	NA	NA
AYY64800.1\|1593732_1593906_+	CopG family transcriptional regulator	NA	NA	NA	NA
AYY64801.1\|1593994_1594501_+	hypothetical protein	A0A1X9I5V7	Streptococcus_phage	4.5e-07	35.4
AYY64802.1\|1594577_1594910_+	hypothetical protein	NA	NA	NA	NA
AYY64803.1\|1594906_1595128_+	hypothetical protein	NA	NA	NA	NA
AYY64804.1\|1595130_1595322_+	hypothetical protein	NA	NA	NA	NA
AYY64805.1\|1595663_1595936_+	hypothetical protein	A0A1X9I5U9	Streptococcus_phage	1.8e-18	56.8
AYY64806.1\|1596806_1598201_+	virulence-associated protein E	W8CQP1	Croceibacter_phage	3.7e-43	33.7
AYY64807.1\|1598493_1598751_+	hypothetical protein	NA	NA	NA	NA
AYY64808.1\|1598747_1598921_+	DUF2758 domain-containing protein	A0A1X9I5U0	Streptococcus_phage	4.3e-10	56.1
AYY64809.1\|1599078_1599636_+	hypothetical protein	A0A1X9I5U4	Streptococcus_phage	2.4e-30	59.8
AYY64810.1\|1599708_1600197_+	hypothetical protein	A0A1X9I5V2	Streptococcus_phage	1.0e-48	58.6
AYY64811.1\|1600330_1600708_+	DUF1492 domain-containing protein	Q7Y4J3	Streptococcus_phage	3.2e-10	37.9

DBSCAN-SWA_4

2076302 : 2087036

Streptococcus_phage(84.62%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYY65271.1\|2076302_2077067_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.9e-15	24.8
AYY65272.1\|2077066_2077777_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.0e-17	27.7
AYY65273.1\|2077795_2078455_+	CBS domain-containing protein	M1NSC5	Streptococcus_phage	4.7e-65	56.5
AYY65274.1\|2078543_2079179_+	dTMP kinase	M1PSC7	Streptococcus_phage	1.4e-66	60.1
AYY65275.1\|2079198_2080062_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.5e-74	50.0
AYY65276.1\|2080092_2080419_+	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	3.2e-30	61.1
AYY65367.1\|2080424_2081288_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	3.7e-110	70.7
AYY65277.1\|2081263_2081425_-	hypothetical protein	NA	NA	NA	NA
AYY65278.1\|2081409_2081514_+	hypothetical protein	NA	NA	NA	NA
AYY65279.1\|2081557_2082193_-	copper homeostasis protein CutC	NA	NA	NA	NA
AYY65280.1\|2082325_2083417_+	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	1.7e-165	78.0
AYY65281.1\|2083484_2084033_+	acetyltransferase	M1PSC3	Streptococcus_phage	1.1e-54	58.4
AYY65282.1\|2084095_2085277_+	phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	1.1e-168	75.3
AYY65283.1\|2085333_2085810_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	7.1e-39	50.9
AYY65284.1\|2085811_2086168_+	arsenate reductase family protein	M1PLC0	Streptococcus_phage	5.2e-42	72.6
AYY65285.1\|2086208_2087036_-	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	5.1e-125	78.4

Anti-CRISPR protein detection

Acr_ID: CP033808.1|AYY64543.1|1311525_1311852_-|replication-initiation-factor

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP033808.1|AYY64543.1|1311525_1311852_-|replication-initiation-factor

1311525_1311852_-

108 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|63	0.9444444444444444	1	1.0