CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number
CP033885	Lactobacillus brevis strain LMT1-73 chromosome, complete genome	1 crisprs	NA	1
CP033887	Lactobacillus brevis strain LMT1-73 plasmid p2, complete sequence	0 crisprs	NA	0
CP033886	Lactobacillus brevis strain LMT1-73 plasmid p1, complete sequence	0 crisprs	NA	0

Cas Category Instructions

Results visualization

1. CP033885

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP033885_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033885_1

1619835-1620167

Orphan

I-E,II-B

Consensus_repeat	Method
GTATTCCCCACGGGTGTGGGGGTGATCC	PILER-CR
GTATTCCCCACGGGTGTGGGGGTGATCC	CRISPRCasFinder
GTATTCCCCACGGGTGTGGGGGTGATNC	CRT

5 spacers

The CRISPR arrays of CP033885_1

>merge|CP033885|1|1619835-1620167|PILER-CR,CRISPRCasFinder,CRT
GTATTCCCCACGGGTGTGGGGGTGATCCTGATAATCAAGTTTACGTGAGAGTTAAGGGTGCGTATTCCCCACGGGTGTGGGGGTGATCCTCATCATATCCCACCCTCATATCCATTAATGGGGTATTCCCCACGGGTGTGGGGGTGATCCCGTTCTCCGCTAATCTAGCCGTCTATGATACTAGTATTCCCCACGGGTGTGGGGGTGATCCTTAATGGATAAAGTCAAAGCTGCTGAAAGCGAGGTATTCCCCACGGGTGTGGGGGTGATTCCGGCCAATGATGTTGAATTGCGCTCGGGTGTTAGTTTTCCCCACATGTGTGTGGGCACTAC

>CP033885|1|1|1619835-1620106|PILER-CR
GTATTCCCCACGGGTGTGGGGGTGATCC	TGATAATCAAGTTTACGTGAGAGTTAAGGGTGC
GTATTCCCCACGGGTGTGGGGGTGATCC	TCATCATATCCCACCCTCATATCCATTAATGGG
GTATTCCCCACGGGTGTGGGGGTGATCC	CGTTCTCCGCTAATCTAGCCGTCTATGATACTA
GTATTCCCCACGGGTGTGGGGGTGATCC	TTAATGGATAAAGTCAAAGCTGCTGAAAGCGAG
GTATTCCCCACGGGTGTGGGGGTGATTC

>CP033885|1|1|1619835-1620167|CRISPRCasFinder
GTATTCCCCACGGGTGTGGGGGTGATCC	TGATAATCAAGTTTACGTGAGAGTTAAGGGTGC
GTATTCCCCACGGGTGTGGGGGTGATCC	TCATCATATCCCACCCTCATATCCATTAATGGG
GTATTCCCCACGGGTGTGGGGGTGATCC	CGTTCTCCGCTAATCTAGCCGTCTATGATACTA
GTATTCCCCACGGGTGTGGGGGTGATCC	TTAATGGATAAAGTCAAAGCTGCTGAAAGCGAG
GTATTCCCCACGGGTGTGGGGGTGATTC	CGGCCAATGATGTTGAATTGCGCTCGGGTGTTA
GTTTTCCCCACATGTGTGTGGGCACTAC

>CP033885|1|1|1619835-1620167|CRT
GTATTCCCCACGGGTGTGGGGGTGATCC	TGATAATCAAGTTTACGTGAGAGTTAAGGGTGC
GTATTCCCCACGGGTGTGGGGGTGATCC	TCATCATATCCCACCCTCATATCCATTAATGGG
GTATTCCCCACGGGTGTGGGGGTGATCC	CGTTCTCCGCTAATCTAGCCGTCTATGATACTA
GTATTCCCCACGGGTGTGGGGGTGATCC	TTAATGGATAAAGTCAAAGCTGCTGAAAGCGAG
GTATTCCCCACGGGTGTGGGGGTGATTC	CGGCCAATGATGTTGAATTGCGCTCGGGTGTTA
GTTTTCCCCACATGTGTGTGGGCACTAC

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP033885_1	1.4\|1620046\|33\|CP033885\|PILER-CR,CRISPRCasFinder,CRT	1620046-1620078	33	MN693505	Marine virus AFVG_25M41, complete genome	16522-16554	9	0.727
CP033885_1	1.4\|1620046\|33\|CP033885\|PILER-CR,CRISPRCasFinder,CRT	1620046-1620078	33	MN693370	Marine virus AFVG_25M236, complete genome	17276-17308	9	0.727
CP033885_1	1.4\|1620046\|33\|CP033885\|PILER-CR,CRISPRCasFinder,CRT	1620046-1620078	33	MN693072	Marine virus AFVG_25M5, complete genome	21558-21590	9	0.727
CP033885_1	1.4\|1620046\|33\|CP033885\|PILER-CR,CRISPRCasFinder,CRT	1620046-1620078	33	MN693265	Marine virus AFVG_25M542, complete genome	20682-20714	9	0.727
CP033885_1	1.4\|1620046\|33\|CP033885\|PILER-CR,CRISPRCasFinder,CRT	1620046-1620078	33	MN693192	Marine virus AFVG_25M42, complete genome	21027-21059	9	0.727
CP033885_1	1.4\|1620046\|33\|CP033885\|PILER-CR,CRISPRCasFinder,CRT	1620046-1620078	33	MH823906	Citrobacter phage Maroon, complete genome	37650-37682	10	0.697
CP033885_1	1.4\|1620046\|33\|CP033885\|PILER-CR,CRISPRCasFinder,CRT	1620046-1620078	33	KX431560	Cronobacter phage vB_CsaM_leN, complete genome	37922-37954	10	0.697
CP033885_1	1.4\|1620046\|33\|CP033885\|PILER-CR,CRISPRCasFinder,CRT	1620046-1620078	33	NC_048646	Cronobacter phage vB_CsaM_leE, complete genome	37922-37954	10	0.697
CP033885_1	1.4\|1620046\|33\|CP033885\|PILER-CR,CRISPRCasFinder,CRT	1620046-1620078	33	KT381880	Citrobacter phage Margaery, complete genome	38095-38127	10	0.697
CP033885_1	1.4\|1620046\|33\|CP033885\|PILER-CR,CRISPRCasFinder,CRT	1620046-1620078	33	NC_048645	Cronobacter phage vB_CsaM_leB, complete genome	38458-38490	10	0.697

1. spacer 1.4|1620046|33|CP033885|PILER-CR,CRISPRCasFinder,CRT matches to MN693505 (Marine virus AFVG_25M41, complete genome) position: , mismatch: 9, identity: 0.727

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
gagatagataaagtaaaagctgctgaaataaaa	Protospacer
  .**.******** *************  .*.

2. spacer 1.4|1620046|33|CP033885|PILER-CR,CRISPRCasFinder,CRT matches to MN693370 (Marine virus AFVG_25M236, complete genome) position: , mismatch: 9, identity: 0.727

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
gagatagataaagtaaaagctgctgaaataaaa	Protospacer
  .**.******** *************  .*.

3. spacer 1.4|1620046|33|CP033885|PILER-CR,CRISPRCasFinder,CRT matches to MN693072 (Marine virus AFVG_25M5, complete genome) position: , mismatch: 9, identity: 0.727

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
gagatagataaagtaaaagctgctgaaataaaa	Protospacer
  .**.******** *************  .*.

4. spacer 1.4|1620046|33|CP033885|PILER-CR,CRISPRCasFinder,CRT matches to MN693265 (Marine virus AFVG_25M542, complete genome) position: , mismatch: 9, identity: 0.727

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
gagatagataaagtaaaagctgctgaaataaaa	Protospacer
  .**.******** *************  .*.

5. spacer 1.4|1620046|33|CP033885|PILER-CR,CRISPRCasFinder,CRT matches to MN693192 (Marine virus AFVG_25M42, complete genome) position: , mismatch: 9, identity: 0.727

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
gagatagataaagtaaaagctgctgaaataaaa	Protospacer
  .**.******** *************  .*.

6. spacer 1.4|1620046|33|CP033885|PILER-CR,CRISPRCasFinder,CRT matches to MH823906 (Citrobacter phage Maroon, complete genome) position: , mismatch: 10, identity: 0.697

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
ggagtgcataaagttaaagctgctgaaactcca	Protospacer
  *.** *******.************* .  .

7. spacer 1.4|1620046|33|CP033885|PILER-CR,CRISPRCasFinder,CRT matches to KX431560 (Cronobacter phage vB_CsaM_leN, complete genome) position: , mismatch: 10, identity: 0.697

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
ggagtgcataaagttaaagctgctgaaactcca	Protospacer
  *.** *******.************* .  .

8. spacer 1.4|1620046|33|CP033885|PILER-CR,CRISPRCasFinder,CRT matches to NC_048646 (Cronobacter phage vB_CsaM_leE, complete genome) position: , mismatch: 10, identity: 0.697

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
ggagtgcataaagttaaagctgctgaaactcca	Protospacer
  *.** *******.************* .  .

9. spacer 1.4|1620046|33|CP033885|PILER-CR,CRISPRCasFinder,CRT matches to KT381880 (Citrobacter phage Margaery, complete genome) position: , mismatch: 10, identity: 0.697

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
ggagtgcataaagttaaagctgctgaaactcca	Protospacer
  *.** *******.************* .  .

10. spacer 1.4|1620046|33|CP033885|PILER-CR,CRISPRCasFinder,CRT matches to NC_048645 (Cronobacter phage vB_CsaM_leB, complete genome) position: , mismatch: 10, identity: 0.697

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
ggagtgcataaagttaaagctgctgaaactcca	Protospacer
  *.** *******.************* .  .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage