CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033896	Corynebacterium choanis strain 200CH chromosome, complete genome	2 crisprs	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas9,cas3,DEDDh,WYL,DinG,csa3	0	20	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP033896_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033896_1

173882-175437

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCGAGCGGGGATGATCC	PILER-CR
GTGTTCCCCGCGCGAGCGGGGATGATCCC	CRISPRCasFinder
GTGTTCCCCGCGCGAGCGGGGATGATCCC	CRT

25 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP033896_1

>merge|CP033896|1|173882-175437|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCGAGCGGGGATGATCCCTGTCCGTATTTTCACGCAGCCGACGGCCACGGGTGTTCCCCGCGCGAGCGGGGATGATCCCCCGGTGGACTACATCAAGTTGCGGCTCGCCAAGGTGTTCCCCGCGCGAGCGGGGATGATCCACGTATCCCCCGCCTTACGATCACGAACACCTAGTGTTCCCCGCGCGAGCGGGGATGATCCCAGCAGGGAATCAGCTTTCCGCCGCCCCCGTTTGTGTTCCCCGCGCGAGCGGGGATGATCCTGAACCAGGCGACGTTAGAGATTGTGGAAAATGGTGTTCCCCGCGCGAGCGGGGATGATCCCGACAAGTGCAAAAGCACCTCGTTGCCGTTGTTGTGTTCCCCGCGCGAGCGGGGATGATCCCTGCTCACGCCCCCACCATCCAGGAATCGACGGGTGTTCCCCGCGCGAGCGGGGATGATCCCCATGAGAGAAAAGCATATCGAACAAGCCCTCAGTGTTCCCCGCGCGAGCGGGGATGATCCCCGCAAATATGGCTTCTTACCGCCCTCGGCAACGTGTTCCCCGCGCGAGCGGGGATGATCCCATCAACCTTGTCACCATCCAGGCTATTCATTTGTGTTCCCCGCGCGAGCGGGGATGATCCCGGCACGTCCGAGATCATCTCATCAGACACTTTGGTGTTCCCCGCGCGAGCGGGGATGATCCCACCGCCCCCTCATCGCGGGGGAACATTTTAAAGTGTTCCCCGCGCGAGCGGGAATGATCCGTACCCGCTTGTCGCGCCGCTCAAGCTCACGGCGTGTTCCCCGCGCGAGCGGGGATGATCCCGGCGCGTCCGAGATCATCTCGTCCGACACTTTGTGTTCCCCGAGCGAGCGGGGATGATCCCAGCCGCCACAACCCCAGCACCGTCATCACCAGGTGTTCCCCGCGCGAGCGGGGATGATCCCACCCGATCCGAATACTCCATACCAAAACATCCGTGTTCCCCGCGCGAGCGGGGATGATCCCGTCGATGATTTTGAGCACAATCTGGTGACGCTGTGTTCCCCGCGCGAGCGGGGATGATCCGCTGGTAAAGCGGCGCTGATCGCTACAGCCACCGTGTTCCCCGCGCGAGCGGGGATGATCCGGAACCACCCGCCATATCCATCGAAGAACTGGAGTGTTCCCCGCGCGAGCGGGGATGATCCCAAGCCCCTGAGCTGTACGAAGCCGGACGCGGCGTGTTCCCCGCGCGAGCGGGGATGATCCCTCGCCAGCGGTTTGGAGACCACGCTCATGCTGGTGTTCCCCGCGCGAGCGTGGATGATCCGCACACAGATTGGATAACCGCAGTAGCGGGCAAGTGTTCCCCGCGCGAGCGGGGATGATCCCACTTCTGGCACCTGGTCCAGGCCGACCAAACCGTGTTCCCCGCGCGAGCGGGGATGATCCCTCTGAAGTCACCTGCCGCTGGATACTCAACGTGTGTTCCCCGCGCGAGCGGGGATGATCCCCACGTGGTGGTGGGGGGTGACGTGCCTGGTGGGTGTTCCCCGCGCGAGCGGGGATGATCCC

>CP033896|1|1|173882-175436|PILER-CR
GTGTTCCCCGCGCGAGCGGGGATGATCC	CTGTCCGTATTTTCACGCAGCCGACGGCCACGG
GTGTTCCCCGCGCGAGCGGGGATGATCC	CCCGGTGGACTACATCAAGTTGCGGCTCGCCAAG
GTGTTCCCCGCGCGAGCGGGGATGATCC	ACGTATCCCCCGCCTTACGATCACGAACACCTA
GTGTTCCCCGCGCGAGCGGGGATGATCC	CAGCAGGGAATCAGCTTTCCGCCGCCCCCGTTT
GTGTTCCCCGCGCGAGCGGGGATGATCC	TGAACCAGGCGACGTTAGAGATTGTGGAAAATG
GTGTTCCCCGCGCGAGCGGGGATGATCC	CGACAAGTGCAAAAGCACCTCGTTGCCGTTGTT
GTGTTCCCCGCGCGAGCGGGGATGATCC	CTGCTCACGCCCCCACCATCCAGGAATCGACGG
GTGTTCCCCGCGCGAGCGGGGATGATCC	CCATGAGAGAAAAGCATATCGAACAAGCCCTCA
GTGTTCCCCGCGCGAGCGGGGATGATCC	CCGCAAATATGGCTTCTTACCGCCCTCGGCAAC
GTGTTCCCCGCGCGAGCGGGGATGATCC	CATCAACCTTGTCACCATCCAGGCTATTCATTT
GTGTTCCCCGCGCGAGCGGGGATGATCC	CGGCACGTCCGAGATCATCTCATCAGACACTTTG
GTGTTCCCCGCGCGAGCGGGGATGATCC	CACCGCCCCCTCATCGCGGGGGAACATTTTAAA
GTGTTCCCCGCGCGAGCGGGAATGATCC	GTACCCGCTTGTCGCGCCGCTCAAGCTCACGGC
GTGTTCCCCGCGCGAGCGGGGATGATCC	CGGCGCGTCCGAGATCATCTCGTCCGACACTTT
GTGTTCCCCGAGCGAGCGGGGATGATCC	CAGCCGCCACAACCCCAGCACCGTCATCACCAG
GTGTTCCCCGCGCGAGCGGGGATGATCC	CACCCGATCCGAATACTCCATACCAAAACATCC
GTGTTCCCCGCGCGAGCGGGGATGATCC	CGTCGATGATTTTGAGCACAATCTGGTGACGCT
GTGTTCCCCGCGCGAGCGGGGATGATCC	GCTGGTAAAGCGGCGCTGATCGCTACAGCCACC
GTGTTCCCCGCGCGAGCGGGGATGATCC	GGAACCACCCGCCATATCCATCGAAGAACTGGA
GTGTTCCCCGCGCGAGCGGGGATGATCC	CAAGCCCCTGAGCTGTACGAAGCCGGACGCGGC
GTGTTCCCCGCGCGAGCGGGGATGATCC	CTCGCCAGCGGTTTGGAGACCACGCTCATGCTG
GTGTTCCCCGCGCGAGCGTGGATGATCC	GCACACAGATTGGATAACCGCAGTAGCGGGCAA
GTGTTCCCCGCGCGAGCGGGGATGATCC	CACTTCTGGCACCTGGTCCAGGCCGACCAAACC
GTGTTCCCCGCGCGAGCGGGGATGATCC	CTCTGAAGTCACCTGCCGCTGGATACTCAACGT
GTGTTCCCCGCGCGAGCGGGGATGATCC	CCACGTGGTGGTGGGGGGTGACGTGCCTGGTGG
GTGTTCCCCGCGCGAGCGGGGATGATCC

>CP033896|1|1|173882-175437|CRISPRCasFinder
GTGTTCCCCGCGCGAGCGGGGATGATCCC	TGTCCGTATTTTCACGCAGCCGACGGCCACGG
GTGTTCCCCGCGCGAGCGGGGATGATCCC	CCGGTGGACTACATCAAGTTGCGGCTCGCCAAG
GTGTTCCCCGCGCGAGCGGGGATGATCCA	CGTATCCCCCGCCTTACGATCACGAACACCTA
GTGTTCCCCGCGCGAGCGGGGATGATCCC	AGCAGGGAATCAGCTTTCCGCCGCCCCCGTTT
GTGTTCCCCGCGCGAGCGGGGATGATCCT	GAACCAGGCGACGTTAGAGATTGTGGAAAATG
GTGTTCCCCGCGCGAGCGGGGATGATCCC	GACAAGTGCAAAAGCACCTCGTTGCCGTTGTT
GTGTTCCCCGCGCGAGCGGGGATGATCCC	TGCTCACGCCCCCACCATCCAGGAATCGACGG
GTGTTCCCCGCGCGAGCGGGGATGATCCC	CATGAGAGAAAAGCATATCGAACAAGCCCTCA
GTGTTCCCCGCGCGAGCGGGGATGATCCC	CGCAAATATGGCTTCTTACCGCCCTCGGCAAC
GTGTTCCCCGCGCGAGCGGGGATGATCCC	ATCAACCTTGTCACCATCCAGGCTATTCATTT
GTGTTCCCCGCGCGAGCGGGGATGATCCC	GGCACGTCCGAGATCATCTCATCAGACACTTTG
GTGTTCCCCGCGCGAGCGGGGATGATCCC	ACCGCCCCCTCATCGCGGGGGAACATTTTAAA
GTGTTCCCCGCGCGAGCGGGAATGATCCG	TACCCGCTTGTCGCGCCGCTCAAGCTCACGGC
GTGTTCCCCGCGCGAGCGGGGATGATCCC	GGCGCGTCCGAGATCATCTCGTCCGACACTTT
GTGTTCCCCGAGCGAGCGGGGATGATCCC	AGCCGCCACAACCCCAGCACCGTCATCACCAG
GTGTTCCCCGCGCGAGCGGGGATGATCCC	ACCCGATCCGAATACTCCATACCAAAACATCC
GTGTTCCCCGCGCGAGCGGGGATGATCCC	GTCGATGATTTTGAGCACAATCTGGTGACGCT
GTGTTCCCCGCGCGAGCGGGGATGATCCG	CTGGTAAAGCGGCGCTGATCGCTACAGCCACC
GTGTTCCCCGCGCGAGCGGGGATGATCCG	GAACCACCCGCCATATCCATCGAAGAACTGGA
GTGTTCCCCGCGCGAGCGGGGATGATCCC	AAGCCCCTGAGCTGTACGAAGCCGGACGCGGC
GTGTTCCCCGCGCGAGCGGGGATGATCCC	TCGCCAGCGGTTTGGAGACCACGCTCATGCTG
GTGTTCCCCGCGCGAGCGTGGATGATCCG	CACACAGATTGGATAACCGCAGTAGCGGGCAA
GTGTTCCCCGCGCGAGCGGGGATGATCCC	ACTTCTGGCACCTGGTCCAGGCCGACCAAACC
GTGTTCCCCGCGCGAGCGGGGATGATCCC	TCTGAAGTCACCTGCCGCTGGATACTCAACGT
GTGTTCCCCGCGCGAGCGGGGATGATCCC	CACGTGGTGGTGGGGGGTGACGTGCCTGGTGG
GTGTTCCCCGCGCGAGCGGGGATGATCCC

>CP033896|1|1|173882-175437|CRT
GTGTTCCCCGCGCGAGCGGGGATGATCCC	TGTCCGTATTTTCACGCAGCCGACGGCCACGG
GTGTTCCCCGCGCGAGCGGGGATGATCCC	CCGGTGGACTACATCAAGTTGCGGCTCGCCAAG
GTGTTCCCCGCGCGAGCGGGGATGATCCA	CGTATCCCCCGCCTTACGATCACGAACACCTA
GTGTTCCCCGCGCGAGCGGGGATGATCCC	AGCAGGGAATCAGCTTTCCGCCGCCCCCGTTT
GTGTTCCCCGCGCGAGCGGGGATGATCCT	GAACCAGGCGACGTTAGAGATTGTGGAAAATG
GTGTTCCCCGCGCGAGCGGGGATGATCCC	GACAAGTGCAAAAGCACCTCGTTGCCGTTGTT
GTGTTCCCCGCGCGAGCGGGGATGATCCC	TGCTCACGCCCCCACCATCCAGGAATCGACGG
GTGTTCCCCGCGCGAGCGGGGATGATCCC	CATGAGAGAAAAGCATATCGAACAAGCCCTCA
GTGTTCCCCGCGCGAGCGGGGATGATCCC	CGCAAATATGGCTTCTTACCGCCCTCGGCAAC
GTGTTCCCCGCGCGAGCGGGGATGATCCC	ATCAACCTTGTCACCATCCAGGCTATTCATTT
GTGTTCCCCGCGCGAGCGGGGATGATCCC	GGCACGTCCGAGATCATCTCATCAGACACTTTG
GTGTTCCCCGCGCGAGCGGGGATGATCCC	ACCGCCCCCTCATCGCGGGGGAACATTTTAAA
GTGTTCCCCGCGCGAGCGGGAATGATCCG	TACCCGCTTGTCGCGCCGCTCAAGCTCACGGC
GTGTTCCCCGCGCGAGCGGGGATGATCCC	GGCGCGTCCGAGATCATCTCGTCCGACACTTT
GTGTTCCCCGAGCGAGCGGGGATGATCCC	AGCCGCCACAACCCCAGCACCGTCATCACCAG
GTGTTCCCCGCGCGAGCGGGGATGATCCC	ACCCGATCCGAATACTCCATACCAAAACATCC
GTGTTCCCCGCGCGAGCGGGGATGATCCC	GTCGATGATTTTGAGCACAATCTGGTGACGCT
GTGTTCCCCGCGCGAGCGGGGATGATCCG	CTGGTAAAGCGGCGCTGATCGCTACAGCCACC
GTGTTCCCCGCGCGAGCGGGGATGATCCG	GAACCACCCGCCATATCCATCGAAGAACTGGA
GTGTTCCCCGCGCGAGCGGGGATGATCCC	AAGCCCCTGAGCTGTACGAAGCCGGACGCGGC
GTGTTCCCCGCGCGAGCGGGGATGATCCC	TCGCCAGCGGTTTGGAGACCACGCTCATGCTG
GTGTTCCCCGCGCGAGCGTGGATGATCCG	CACACAGATTGGATAACCGCAGTAGCGGGCAA
GTGTTCCCCGCGCGAGCGGGGATGATCCC	ACTTCTGGCACCTGGTCCAGGCCGACCAAACC
GTGTTCCCCGCGCGAGCGGGGATGATCCC	TCTGAAGTCACCTGCCGCTGGATACTCAACGT
GTGTTCCCCGCGCGAGCGGGGATGATCCC	CACGTGGTGGTGGGGGGTGACGTGCCTGGTGG
GTGTTCCCCGCGCGAGCGGGGATGATCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP033896.1\|AZA12557.1\|163804_164491_-\|hypothetical-protein	unknown	unknown	unknown
CP033896.1\|AZA12562.1\|170072_171173_+\|CRISPR-system-Cascade-subunit-CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP033896.1\|AZA12570.1\|179850_180369_-\|hypothetical-protein	unknown	unknown	unknown
CP033896.1\|AZA12573.1\|183987_185439_+\|Htaa	unknown	unknown	gnl\|CDD\|367875
CP033896.1\|AZA12563.1\|171174_171876_+\|CRISPR-associated-protein	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187886
CP033896.1\|AZA12560.1\|167705_169442_+\|CRISPR-associated-protein-CasA/Cse1	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
CP033896.1\|AZA12561.1\|169425_170040_+\|CRISPR-associated-protein-Cse2	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
CP033896.1\|AZA12568.1\|177987_179178_+\|C4-dicarboxylate-transporter/malic-acid-transport-protein	unknown	unknown	gnl\|CDD\|187760
CP033896.1\|AZA12575.1\|185761_186451_-\|Heme-oxygenase	unknown	unknown	gnl\|CDD\|350856
CP033896.1\|AZA12572.1\|182579_183740_+\|Hemin-binding-periplasmic-protein-HmuT-precursor	unknown	unknown	gnl\|CDD\|226928
CP033896.1\|AZA12566.1\|173483_173837_+\|CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
CP033896.1\|AZA12558.1\|164536_164755_+\|hypothetical-protein	unknown	unknown	unknown
CP033896.1\|AZA12574.1\|185401_185674_-\|hypothetical-protein	unknown	unknown	unknown
CP033896.1\|AZA12567.1\|176287_177832_+\|putative-propionyl-CoA-carboxylase-beta-chain-5	unknown	unknown	gnl\|CDD\|227136
CP033896.1\|AZA12564.1\|171875_172529_+\|CRISPR-associated-endoribonuclease-Cse3	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
CP033896.1\|AZA12569.1\|179293_179695_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378616
CP033896.1\|AZA12559.1\|164777_167561_+\|CRISPR-associated-nuclease/helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP033896.1\|AZA12565.1\|172528_173473_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP033896.1\|AZA12571.1\|180453_182463_+\|Htaa	unknown	unknown	gnl\|CDD\|367875
CP033896.1\|AZA12576.1\|186682_187648_-\|Hemin-import-ATP-binding-protein-HmuV	unknown	unknown	gnl\|CDD\|237422

Protein	Function_ID	Function_description	E-value
CP033896.1\|AZA12575.1\|185761_186451_-\|Heme-oxygenase	gnl\|CDD\|350856	cd19165, HemeO, heme oxygenase in eukaryotes and some bacteria. This subfamily contains heme oxygenase (HO, EC 1.14.14.18) found in eukaryotes as well as some proteobacteria, including cyanobacteria. Heme oxygenase (HO) catalyzes the rate limiting step in the degradation of heme to biliverdin in a multi-step reaction. HO is essential for recycling of iron from heme which is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. In vertebrates, HO plays a role in heme homeostasis and oxidative stress response, and cellular signaling in mammals that include isoforms HO-1, HO-2 and HO-3. HO-1 is ubiquitously expressed after induction while HO-2 expression is constitutive, mostly limited to certain organs, such as the brain, testes, and the vascular system. HO-3 is non-functional in humans, suggesting that the Hmox3 gene is a pseudogene derived from HO-2 transcripts. In higher plants and cyanobacteria, heme oxygenase is required for the synthesis of light-harvesting pigments, which contain tetrapyrrols derived from biliverdin. Candida albicans expresses a heme oxygenase that is required for the utilization of heme as a nutritional iron source, whereas Saccharomyces cerevisiae responds to iron deprivation by increasing Hmx1p transcription, which is controlled by the major iron-dependent transcription factor, Aft1p, and promotes both the re-utilization of heme iron and the regulation of heme-dependent transcription during periods of iron scarcity. In pathogenic bacteria, HO is part of a pathway for iron acquisition from host heme. In Leptospira interrogans, a pathogenic spirochete that causes leptospirosis, HO is required for iron utilization when hemoglobin is the sole iron source, thus making HO an interesting target for novel antimicrobial agents. HO shares tertiary structure similarity to methane monooxygenase (EC 1.14.13.25), ribonucleotide reductase (EC 1.17.4.1) and thiaminase II (EC 3.5.99.2), but shares little sequence homology.	1.00634e-60
CP033896.1\|AZA12562.1\|170072_171173_+\|CRISPR-system-Cascade-subunit-CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	4.1047e-148
CP033896.1\|AZA12573.1\|183987_185439_+\|Htaa	gnl\|CDD\|367875	pfam04213, HtaA, Htaa. This domain is found in HtaA, a secreted protein implicated in iron acquisition and transport.	9.85665e-29
CP033896.1\|AZA12563.1\|171174_171876_+\|CRISPR-associated-protein	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.85229e-41
CP033896.1\|AZA12560.1\|167705_169442_+\|CRISPR-associated-protein-CasA/Cse1	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	3.78273e-97
CP033896.1\|AZA12561.1\|169425_170040_+\|CRISPR-associated-protein-Cse2	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.7432e-23
CP033896.1\|AZA12568.1\|177987_179178_+\|C4-dicarboxylate-transporter/malic-acid-transport-protein	gnl\|CDD\|187760	cd09320, TDT_like_2, The Tellurite-resistance/Dicarboxylate Transporter (TDT) family. The Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes members from all three kingdoms, but only three members of the family have been functionally characterized: the TehA protein of E. coli functioning as a tellurite-resistance uptake permease, the Mae1 protein of S. pombe functioning in the uptake of malate and other dicarboxylates, and the sulfite efflux pump (SSU1) of Saccharomyces cerevisiae. In plants, the plasma membrane protein SLAC1 (Slow Anion Channel-Associated 1), which is preferentially expressed in guard cells, encodes a distant homolog of fungal and bacterial dicarboxylate/malic acid transport proteins. SLAC1 is essential in mediating stomatal responses to physiological and stress stimuli. Members of the TDT family exhibit 10 putative transmembrane alpha-helical spanners (TMSs).	2.44563e-103
CP033896.1\|AZA12572.1\|182579_183740_+\|Hemin-binding-periplasmic-protein-HmuT-precursor	gnl\|CDD\|226928	COG4558, ChuT, ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism].	3.47192e-66
CP033896.1\|AZA12566.1\|173483_173837_+\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	7.85961e-33
CP033896.1\|AZA12576.1\|186682_187648_-\|Hemin-import-ATP-binding-protein-HmuV	gnl\|CDD\|237422	PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.	9.26111e-97
CP033896.1\|AZA12567.1\|176287_177832_+\|putative-propionyl-CoA-carboxylase-beta-chain-5	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
CP033896.1\|AZA12564.1\|171875_172529_+\|CRISPR-associated-endoribonuclease-Cse3	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	6.30194e-74
CP033896.1\|AZA12569.1\|179293_179695_-\|hypothetical-protein	gnl\|CDD\|378616	pfam11255, DUF3054, Protein of unknown function (DUF3054). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	9.57294e-20
CP033896.1\|AZA12559.1\|164777_167561_+\|CRISPR-associated-nuclease/helicase-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.62479e-78
CP033896.1\|AZA12565.1\|172528_173473_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	6.40573e-131
CP033896.1\|AZA12571.1\|180453_182463_+\|Htaa	gnl\|CDD\|367875	pfam04213, HtaA, Htaa. This domain is found in HtaA, a secreted protein implicated in iron acquisition and transport.	8.05562e-47

>CP033896.1|AZA12566.1|173483_173837_+|CRISPR-associated-endoribonuclease-Cas2
MMTLVVTACPQRLRGFLTRWLMEIEPGVYVGKVNARIRDALWDITVAEIAGGRAILVYPDSRKEAGFEVRVHRTTWEVVDYEGLALIRRPSTTKKQIMRSGWSKASKMRRARRNRSK
>CP033896.1|AZA12565.1|172528_173473_+|CRISPR-associated-endonuclease-Cas1
MANINISPKDLLRVEDRISFVYLEHCTIGRDGGALTATDDSGVTYVPVSAVSVILLGPGTRVTHPAMTVIGESGCAVMWVGESGTRYYAHGRGVARSSRLLIQQARLCSNRNQRLAVARAMYAMRFPEEDTSSLTMQQLRGKEGARVRKIYRQCATEYDVEWHGREYDPQDFAGGSIVNQALSAAHCCLYGLVHAVIVGLGCAPGLGFVHCGHDRSFVYDIADLYKAQVTIPVAFRIAKQFEDVMVNESDLGRAVRYELRDQFRDRRLAEQIVHDIKTLLLADEVSSEDIATDKNTLWDGKTGSIAGGVNYGDG
>CP033896.1|AZA12564.1|171875_172529_+|CRISPR-associated-endoribonuclease-Cse3
MYFSVVELNRRRRGTQMLLSSPGKLHGAVMDAFPREAIAGRRVLWRVDHLSDRTLLYVVSPVRPSFEHIQEQAGWQHAESWKIRSYQPLLDSLQVGNRYAFRLAANPTHTVTFPDGRKKKIGHVTAKQQLQWLLDRAETIGVKFPQLEESVPAVRVIRRDHHQFRKQHHKVTLRTAVFEGALEVCDPDRLRQALTTGIGRGKAYGAGLLTLAPLADS
>CP033896.1|AZA12563.1|171174_171876_+|CRISPR-associated-protein
MSATLLLKLDAPMQAWGAESRFVRRQTRTEPTKSGVVGLLAAALGRSREADISDLAALRFGVRTDQIGAIERCFQTEVDWRSGKAMPLTERFYLSDYKFVAGVEGPREQIELLAHAVNHPVYPLFLGRRSCPPGSRIGLPVVEHDLRTALATTPWTAALWYRKKQRTSVRLTIALDAQPGAAEEYCRDQPVSFQQSNRVYQLRGITREEITVENPDGYTPAQSHDPFALLGEQ
>CP033896.1|AZA12562.1|170072_171173_+|CRISPR-system-Cascade-subunit-CasC
MTTYVDFHILQLLPPSNINRDDTGSPKSARFGGVERHRVSSQAWKRATRQEFGRYLDESRLGIRTKQGPKIIAERICELREDCTAEDAFEAAKKIVALGGIKLDKKNPDQTGYLMFYAREEINHLAELAIQLLDGEDVKKAQVRKAIDNARAVDIALFGRMIADAPELNVDASCQVKHALSVHRATPDFDYYTAIDDELGADESGAGMIGTIEFVSSVLYRYATVSVDSLEQNLGDPAASAEAIRAFAQAFTLSMPTGKMNTFANRTRPDFVLVEIREDQPVELGSCFEDAVPADGNTMRNAALRLAQYAIDGDAQFGTAPVKSFYMALDRATTGDLEAVLAERSEKLSFPELVERIGAHVYQPEA
>CP033896.1|AZA12561.1|169425_170040_+|CRISPR-associated-protein-Cse2
MSQQPSNAAALVKNHVGRRVSQLQAELLANSSTARAKLANMRRSQSLVELQPTVANIAFAGIPEQLVGVRDELNFAERSIVAAINLYARHQQSQVQPMHVADIRFGQAVHTLAVRSNLSDFETGPLVRRFNTAVTSQSMNELMWHCKGLISQMRAEQVPLDYGLLAADFYRFHFESGQQQVRLAWSRDMYARALPTVDAEQPAP
>CP033896.1|AZA12560.1|167705_169442_+|CRISPR-associated-protein-CasA/Cse1
MTTMNISVEQAEQPKPFDLLEKPWIPVLDLAGQEHEVSIRTLFADAQRYQRLSDPLETVNFAILRMLLAIFYRAYAKEQYADLDTALDLWQQLWDGDSLLTPEVANYLDQHADRFDLRHPTHPFGQVATLTTAKGEYKPVSIILPDVSGLFALRSADSLTAAEAARAVIHCQAYDFSGIKSGAVGDKRVKSGRGYPIGIGWSGWLGGITLHGSNLKQTLLLNFVAHRPELLSREAIDRDLPYWELDDLSAAAREEARFNRANPERTPAYGPVELLCWPQRRIRLFWDEQQVEELLICNGDPIGYAAQDGVELMTAWRYSDPQSRKAKRLVYMPKAATAGRALWRSLEGILVTSKPTSVKTNFADGGLTPSVKPAKTIEWFGTLWREDCLDEQQLDQVRVAEVSMEYGAQSSSFSNIITDSLAIGAKLYDPQRADLRDAARNAVELVDECFEALKRLKKNIHFAASGDWEVDTADVEDEFYHLVDSRYRSWLLSLTDFATAEAALNTWKDELRDFARDIGRRQISGYGPHIWAGRWYEARKTRITAGTALRRYENIIASLLAYSADNEERSGMEDVPTT
>CP033896.1|AZA12559.1|164777_167561_+|CRISPR-associated-nuclease/helicase-Cas3
MVDVQSFWAKFAPATGQYLSLFQHGIDTANLMPHVASVFVSTSTMRQLEQAVAPASLPKLLTTLGFAHDLGKISHFQAKVPELAARLDSSYRLGHVSQADHRDAPHAAVSALSFTDWLKARATVKLGRQARRGWEQILGGHHGVFPNPDQLLATRRVLGVQAPQWAQARFAYLDEMAAHFDITQTDIDSFAQLTWSPDKQAVLTGLLIATDWIASDEQLFPYDNLPEQDRLERALSRIDIGHPWQPERSAGLTTFADQFDLPATAEMNAMQTAVVQMASDCEAPSLIIVESETGSGKTEAALLAARELAANHGANGIFFAQPTRVNADAMFQRVRDWLERSNASSSSVVSMLLAHGKSAFNEQYVSLFRNRYFQAQPRSIFDEPGTGLQSGGITIEAPKWVRGRKTALLGSVVVGTIDQLLFAALSSKHLVLRHLGLAGKVVIIDEVHAADTWMNTYLTRMLWWLGAYGVNVIALSATLPVAQRDALCGAYLAGAKGLLQQPTVATPVHGYPRVTSVSRDCDVPKTTVIPLAGASKTVSVKFFVGDQDDIAEHVIELSRIGGCIGVICDTVGRAQQLYSRITTDSRVLADGTPVLLLHSRFLADQRASIETTIVQKLGRDATQRPKRLLVIATQILEQGLDLDFDVLVSDLAPTDLLLQRIGRLHRHPSNHAVRPEAFRTPTIFITGLLTPTSVAQPGDIARGIVQVYRRLPLLHTLATLHEQLSASGEVVQIPEDVEQLMYRTYTAPIIPEGWSSAVERASAAEQRFETRQAMESARFCIDPPTQPLSTSFNRLNIPADEAAAGAQVRDADAAVEVIVVRRQAGRIYALDHVTELADIPLDEVAGLTEEHARRLASCTVRLPGWIVSDELLYQLESDGLESWQQSAWLAGQLPLILDEDFSSVHGAIMFRYDYALGLLVERINHDE
>CP033896.1|AZA12558.1|164536_164755_+|hypothetical-protein
MVFGLQRRAWSALNHLPSLSRHPTRAGAGRGELGHFRRSFLEFEERSSDNERVIETSNGMVALDMQQAPKSK
>CP033896.1|AZA12557.1|163804_164491_-|hypothetical-protein
MLHRVPHLFNNALGMILCIRDITSAPRVIPAQAGFLLSAPRAIAAPLCPSGETPLLWCPTWVMVLCSNRQGTDAKPSSHTGITQPAFLLPLFEHRTWGCQLLDALPGVDLHHEAFAIVFFTTLPCDLVCTRDQLQVPLISRNTIVALWCVRGCGVLRSYANSSQRMDWELLAVFLCGYVSIVAIFSVKDTPTIPMAGSSTTARWSPLRWTISSSGRSAFQPPSSAISA
>CP033896.1|AZA12567.1|176287_177832_+|putative-propionyl-CoA-carboxylase-beta-chain-5
MESTTAGKLADLRARLAKAADPGSERARAKRDQEGRSTPRQRIAALLDAGSFVEIGALGRTPDEPDAPYGDGVVTGYGRIDGRPVAIYAHDKTVYGGSVGEAFGRKVCEVMDMAIKVGCPVIGIQDSGGARIQDAVTSLAMYSEIARRQLPLSGRSPQISIMLGKCAGGAVYAPVTTDFVVAVEDAEMYVTGPAVIKSVTGEEITSYELGGAPQQMQNGNVSHVAATEQEAFEYVRDLLDQLPTSCFEQPPVFVSPSDEETDRDRALDTFMPSDSNAGYDMHDLLEQIFDDEHFLEIQEDFAPNMIVGFTHIDGKSVGVIANQPIQLAGCIDADAADKAARFIRICDAYNIPLVFVVDTPGYLPGVSQEKVGLIHRGAKLGFAVVEATVPKVSLIVRKAYGGAYAVMGSKNLSGDINLAWPTAQVAVMGAAAAEATLFAKRLEATPEAQRPFMREMLLNFYNENMTSPYVAAERGFIDAMIEPRDTRVALRQALRQLATKQVEPVAKKHTIMPM
>CP033896.1|AZA12568.1|177987_179178_+|C4-dicarboxylate-transporter/malic-acid-transport-protein
MNKLHKNADQSTGSVVGDGYGDNVTESILSGATINRTGRPSRPPSQVPPAGPVWFGSTMGTGILSTLLFNHQHHVGLFAPLSLVMLVIGWVLLVGLSVAFAVRCVRNPAIIRPVICEPTMSPAWGMVAMGYLAVGSATYTVLPAFFPATQSIVDDIDLVMWLIGTTLGVITAIGFAAVLMRGNVGDPTPVWGLPLVPPTVSATTGAIQVPHLPNVTAQIVMLTVSVGCFFVALALGMAVFIVAYEHAWRRARLPLAASAASCIPLGIVGQSTAAAQALSSQAQLLSIPAIRPALQEMANYYGVVVLTLGVPLLAWAIYTTVRGWYLRMPFSPGWWATTFPIGTLCLGAHLLAGGSGHPAWDWISFVLLLLLCTTWSISALASVWAVIAHLRREQAA
>CP033896.1|AZA12569.1|179293_179695_-|hypothetical-protein
MATVIHNNPYPARIVFSLDVVSILLFALLARLAHRSSLGFSISGWLDTAWPFLLGVVISWVIIAVAKLRPSAIAPTGIIVWLVTVATGLTIWGLRHGAIPHWSFILVASTVSGVLLLGYRAVLAKKAPRNPAS
>CP033896.1|AZA12570.1|179850_180369_-|hypothetical-protein
MSFLGDDGVPAPVNNPYAALPKGLNLIERLVTASGMTLAAISIAMNSLTGVAIGFTIAVLALIMISARADRVWWRSMRRIHPELFPPHTTPAPRKHTMRAAIVFTATLGIALLLSAVTLPTQVHSVLIALFGAVSLIGIFAVLRTPAAVDHSSPRSTFATSTEPATDSSNKP
>CP033896.1|AZA12571.1|180453_182463_+|Htaa
MVCAPSRASKQRQVSNQSRRLLAATATTLLVAGGVLLPIAGEGAVVPVAAAADCSDPYLAISGEMTWGVKESFLKYVTGPIAKGSYSTSGAAKQTATGFSFPLKQSYVESGGDEGVLAGSGTVQFSGHGGKLATTFTAPIITFTRADEAMLSLEVTSQDPEGKPVAVSGKRVDFATVRFSAPLQGTGSYQGEVSLTSAGATAFADFYEPGTLMDPLVIEVTGADSRCGKRPTASNSGGSTAASTKYDLDTGHPGLDALGLLNSYLSAGNSAIENSLKIVDNIDKITARQNPHLRQPGAASGASAPGGSGAAVPEQGSAVRPGQPAAASGTPQVASVPGTSSGSTQPGAAPAAVQSGGGADGQQCQQVTQSAIAWGVKTSFRSYITGSIAKGSWSLSGVSERGGVFQFAGSGGSFDPAQSSGTLTTTGEVRFSGHGGILDLRLSDPAVVIAGSTGQLVATVSSQDTSGNPRDYGRVVLATIAVDELQTSDDAVSGSGQVYLTEVGAQAFGDFYEPGTALDPIRFQARLGEGSSCTTGVFTGAATGAAGGSSAGALQAAAGRNSGTAATTERSTVAAGTAEGLDLLDGQEDASGTDVRTGRAFGQRGDGKVTFHSADTTNPQGSTAAAGADTLTAASVPGRFSPWQYALITIAFVVAAAACVGMARFEQLR
>CP033896.1|AZA12572.1|182579_183740_+|Hemin-binding-periplasmic-protein-HmuT-precursor
MFCRFRNRAHTTRCKITAGMFTAAALLLAGCAESGEPGAQSAATTASALASATTLQPSAGFAAALAEFQSTVTKGNYPTSGESSAKLVGDVTPITPDPAVSLPVSLNDADGYEVTVTDISRILPLDLYGTTSRTLAGLGLGEHIIGRSVSSTEPLLQDVPVVTQAGHNINVEAVLNLHPTLVIVDHSIGPAEAIDQIRAAGVTVVVIQPSRTIDSIGDDIRTIAGITGVNEAGEQLARRAEAERDEAIAAISAVSPATPLDLAFIYARGTGGVFFILGPEAGTTDLFSAVGAHDTAADAGLNDTTPANAEALVKLNPEVIVMMSAGLESTGGVPGLLARPGIAQTTAGQQQRIVAIPDSQALSFGPQTGEMLLAFAQALYGPLTDS
>CP033896.1|AZA12573.1|183987_185439_+|Htaa
MRTPQIRPFTRALVAVATATALATSLAATPAATAAEAATCSAEQQISSVQAANFVWNIRESYVNYITGPIARGSLTGEGDITVTGERKDTKIEYRATKAELDGSKLQLTVDGAIHALGHKQADSEDWILDTKLSNLRLTIDGANAALVADVASRPMEDTHTASPVEQRKAVTLVTWTMDRPTIDGEQFTINSTGAGALTEEGRFAFGNFYKAGDEMAPLAVAAVLHKTCPAPEQPEQPDTPETPEQPTNPSQPSNPEQPAATPQLAYSAPQLTADGTHVVTVTGTGFTKEVLASRPPLAGKNAGLYIAFGRFADEWKPSAGAGRDARPTADVKWAVHQEDMQLVGGAARGAVELTPAGTFTAQLQVSKEAADKLADSGNYGIYTYAGGGAVEPSWEMAIPLQFVDATPETPAQPEQPQNQPETSDNSGNTSADKQESSSNGYAAILGVLGLAGVGALLVWIISQTPFAAQILNNLPPLPGLPR
>CP033896.1|AZA12574.1|185401_185674_-|hypothetical-protein
MPEVTAIPTAQGRYSRRRRGVVAAAENNHNSSTIRFLCTAQHHHLIQVRWWCCVFVCRVFSRVQPRFQGFTVQNYCRDPSGAALAVVADC
>CP033896.1|AZA12575.1|185761_186451_-|Heme-oxygenase
MTTPTLTLAESLKCSTQQAHNQAEHSTFMTDLLEGRLPVAAFIALQQQSLLVYSALETALDHFADDPRLATLGDRRLDRASRLRDDLAALGVRATQANITALPATAAYVDSINSCVTNNDLLGLLAHHYVRYLGDLSGGQIIARRMMKYLALPAEALSFYDFSELGKIKPYKDRYREALSDLGERLSDAETHHMAAEATRAFHHNFALFSELGAQYPTPAAPGETPDLH
>CP033896.1|AZA12576.1|186682_187648_-|Hemin-import-ATP-binding-protein-HmuV
MAARNWVRKRRPVGAMESGAVAPQQGQACSQTPAAVAGSPSLAAAGVESDAGVSSLDAPAVLEVSDLAVAVGPAKRRRIIVQDVSFHLSPGEVVGLIGPNGAGKSTLLAALSGDIAPAAGAIRYGGRPLAGLSDRLAAQHRAVMLQDTSVAFSYTVEDVVRMGRSAWPNEPAGDDSIVHEALRQVELLDYRDRDIATLSGGERARCAFARVIAQDTRLLLLDEPTAAMDIGHSEKTMALVRSLAAQGKAVLIVMHDLAAAARHCDRLILLAEHTVKAIGSPQTVCTAEHLSAAYQWPVAVHEHAGDIVIRPQQAPAPPVGG

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Crispr_ID: CP033896_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033896_2

502612-503352

TypeII

Consensus_repeat	Method
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	PILER-CR
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	CRISPRCasFinder
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	CRT

11 spacers

cas2,cas1,cas9

The CRISPR arrays of CP033896_2

>merge|CP033896|2|502612-503352|PILER-CR,CRISPRCasFinder,CRT
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAACATGAAAGCATACTCATACGACAGCCCTAGGGAGTATACCAGGGGATTTTTGTGTCGAACCCCAACCTGCACTTGTCGTTTGTGGCGCGTGCCGGGAGTATACCAGGGGATTTTTGTGTCGAACCCCAACCTACCGGGCTCACCCCGCAGGCCTCGGAGGAGTATACCAGGGGATTTTTGTGTCGAACCCCAACGTGCCGCTGCAGCCACTGTGACAGACAAGGAGTATACCAGGGGATTTTTGTGTCGAACCCCAACGTGCAGTCTGAGGTGGCGCCGCTGAAGGGGAGTATACCAGGGGATTTTTGTGTCGAACCCCAACGCCATCCGCCATGTAGTAGCACAAGGCGGGAGTATACCAGGGGATTTTTGTGTCGAACCCCAACGTGCTGAAAGACAATGCGGCGGCGGTGCGGAGTATACCAGGGGATTTTTGTGTCGAACCCCAACGCAGAGCGCGGCGAGGTGTGTTGGCTGTGGAGTATACCAGGGGATTTTTGTGTCGAACCCCAACTTTGAGGTGTCGGTGGTGCCGATCGGTGGGAGTATACCAGGGGATTTTTGTGTCGAACCCCAACCCACTAGGGCTCGCCGCACTTGGATCATGGAGTATACCAGGGGATTTTTGTGTCGAACCCCAACGGGCAGATGATCGAGACAGCGCTGGGTGGGAGTATACCAGGGGATTTTTGTGTCGAACCCAAAG

>CP033896|2|2|502612-503288|PILER-CR
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	ATGAAAGCATACTCATACGACAGCCCTAG
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	CTGCACTTGTCGTTTGTGGCGCGTGCCG
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	CTACCGGGCTCACCCCGCAGGCCTCGGA
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	GTGCCGCTGCAGCCACTGTGACAGACAA
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	GTGCAGTCTGAGGTGGCGCCGCTGAAGG
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	GCCATCCGCCATGTAGTAGCACAAGGCG
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	GTGCTGAAAGACAATGCGGCGGCGGTGC
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	GCAGAGCGCGGCGAGGTGTGTTGGCTGT
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	TTTGAGGTGTCGGTGGTGCCGATCGGTG
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	CCACTAGGGCTCGCCGCACTTGGATCAT
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC

>CP033896|2|2|502612-503352|CRISPRCasFinder
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	ATGAAAGCATACTCATACGACAGCCCTAG
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	CTGCACTTGTCGTTTGTGGCGCGTGCCG
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	CTACCGGGCTCACCCCGCAGGCCTCGGA
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	GTGCCGCTGCAGCCACTGTGACAGACAA
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	GTGCAGTCTGAGGTGGCGCCGCTGAAGG
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	GCCATCCGCCATGTAGTAGCACAAGGCG
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	GTGCTGAAAGACAATGCGGCGGCGGTGC
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	GCAGAGCGCGGCGAGGTGTGTTGGCTGT
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	TTTGAGGTGTCGGTGGTGCCGATCGGTG
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	CCACTAGGGCTCGCCGCACTTGGATCAT
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	GGGCAGATGATCGAGACAGCGCTGGGTG
GGAGTATACCAGGGGATTTTTGTGTCGAACCCAAAG

>CP033896|2|2|502612-503352|CRT
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	ATGAAAGCATACTCATACGACAGCCCTAG
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	CTGCACTTGTCGTTTGTGGCGCGTGCCG
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	CTACCGGGCTCACCCCGCAGGCCTCGGA
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	GTGCCGCTGCAGCCACTGTGACAGACAA
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	GTGCAGTCTGAGGTGGCGCCGCTGAAGG
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	GCCATCCGCCATGTAGTAGCACAAGGCG
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	GTGCTGAAAGACAATGCGGCGGCGGTGC
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	GCAGAGCGCGGCGAGGTGTGTTGGCTGT
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	TTTGAGGTGTCGGTGGTGCCGATCGGTG
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	CCACTAGGGCTCGCCGCACTTGGATCAT
GGAGTATACCAGGGGATTTTTGTGTCGAACCCCAAC	GGGCAGATGATCGAGACAGCGCTGGGTG
GGAGTATACCAGGGGATTTTTGTGTCGAACCCAAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP033896.1\|AZA12815.1\|502256_502562_+\|CRISPR-associated-endoribonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
CP033896.1\|AZA12806.1\|489506_490400_+\|Phosphoribosylaminoimidazole-succinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
CP033896.1\|AZA12810.1\|493039_495388_+\|Phosphoribosylformylglycinamidine-synthase-2	unknown	unknown	gnl\|CDD\|234921
CP033896.1\|AZA12807.1\|490514_491036_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238207
CP033896.1\|AZA12821.1\|510961_512176_-\|Aminomethyltransferase-folate-binding-domain-protein	unknown	unknown	gnl\|CDD\|223431
CP033896.1\|AZA12811.1\|495728_497024_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378351
CP033896.1\|AZA12812.1\|497571_497835_+\|hypothetical-protein	unknown	unknown	unknown
CP033896.1\|AZA12814.1\|501324_502233_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
CP033896.1\|AZA12813.1\|498007_501328_+\|CRISPR-associated-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|375896
CP033896.1\|AZA12809.1\|491985_492663_+\|Phosphoribosylformylglycinamidine-synthase-1	unknown	unknown	gnl\|CDD\|235140
CP033896.1\|AZA12820.1\|510332_510530_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378620
CP033896.1\|AZA12818.1\|506840_508391_+\|Amidophosphoribosyltransferase-precursor	unknown	unknown	gnl\|CDD\|236113
CP033896.1\|AZA12825.1\|514612_515695_+\|Mycothiol-acetyltransferase	unknown	unknown	gnl\|CDD\|132489
CP033896.1\|AZA12822.1\|512216_513353_+\|4-amino-4-deoxychorismate-lyase	unknown	unknown	gnl\|CDD\|236114
CP033896.1\|AZA12816.1\|504725_505679_-\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|224523
CP033896.1\|AZA12808.1\|491734_491989_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurS	unknown	unknown	gnl\|CDD\|235659
CP033896.1\|AZA12823.1\|513467_513704_+\|hypothetical-protein	unknown	unknown	unknown
CP033896.1\|AZA12819.1\|508530_509643_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
CP033896.1\|AZA12817.1\|506087_506708_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380033
CP033896.1\|AZA12824.1\|513728_514472_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378046

Protein	Function_ID	Function_description	E-value
CP033896.1\|AZA12815.1\|502256_502562_+\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.70553e-19
CP033896.1\|AZA12806.1\|489506_490400_+\|Phosphoribosylaminoimidazole-succinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	1.02034e-180
CP033896.1\|AZA12810.1\|493039_495388_+\|Phosphoribosylformylglycinamidine-synthase-2	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
CP033896.1\|AZA12807.1\|490514_491036_+\|hypothetical-protein	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	1.35685e-26
CP033896.1\|AZA12821.1\|510961_512176_-\|Aminomethyltransferase-folate-binding-domain-protein	gnl\|CDD\|223431	COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only].	3.30136e-35
CP033896.1\|AZA12811.1\|495728_497024_+\|hypothetical-protein	gnl\|CDD\|378351	pfam10011, DUF2254, Predicted membrane protein (DUF2254). Members of this family of bacterial proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.	1.0397e-104
CP033896.1\|AZA12814.1\|501324_502233_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	7.72744e-87
CP033896.1\|AZA12813.1\|498007_501328_+\|CRISPR-associated-endonuclease-Cas9	gnl\|CDD\|375896	pfam18470, Cas9_a, Cas9 alpha-helical lobe domain. This is an alpha-helical lobe domain found in Cas9 proteins. Cas9 enzymes adopt a bilobed architecture composed of a nuclease lobe containing juxtaposed RuvC and HNH nuclease domains and a variable alpha-helical lobe likely to be involved in nucleic acid binding. Amino acid residues located in both the nuclease and alpha-helical lobe clefts are highly conserved within type II-A Cas9 proteins.	1.71864e-93
CP033896.1\|AZA12809.1\|491985_492663_+\|Phosphoribosylformylglycinamidine-synthase-1	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	1.50644e-132
CP033896.1\|AZA12820.1\|510332_510530_-\|hypothetical-protein	gnl\|CDD\|378620	pfam11273, DUF3073, Protein of unknown function (DUF3073). This family of proteins with unknown function appears to be restricted to Actinobacteria.	7.4343e-21
CP033896.1\|AZA12818.1\|506840_508391_+\|Amidophosphoribosyltransferase-precursor	gnl\|CDD\|236113	PRK07847, PRK07847, amidophosphoribosyltransferase; Provisional.	0
CP033896.1\|AZA12825.1\|514612_515695_+\|Mycothiol-acetyltransferase	gnl\|CDD\|132489	TIGR03448, mycothiol_MshD, mycothiol synthase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	2.26825e-70
CP033896.1\|AZA12822.1\|512216_513353_+\|4-amino-4-deoxychorismate-lyase	gnl\|CDD\|236114	PRK07849, PRK07849, aminodeoxychorismate lyase.	1.22892e-108
CP033896.1\|AZA12816.1\|504725_505679_-\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	1.25985e-38
CP033896.1\|AZA12808.1\|491734_491989_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurS	gnl\|CDD\|235659	PRK05974, PRK05974, phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed.	4.44608e-31
CP033896.1\|AZA12819.1\|508530_509643_+\|Phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
CP033896.1\|AZA12817.1\|506087_506708_+\|hypothetical-protein	gnl\|CDD\|380033	pfam17844, SCP_3, Bacterial SCP ortholog. This domain is found in MSMEG_5817 gene product from M. smegmatis. It has been shown to be vital for mycobacterial survival within host macrophages. Crystal structure revealed a Rossmann-like fold alpha/beta two-layer sandwich forming a highly hydrophobic interface cavity and with high structural homology to the SCP family. Hence, it has been suggested that this domain may be involved in the interaction of apolar ligands through its hydrophobic cavity. Alanine-scanning mutagenesis of the hydrophobic cavity of MSMEG_5817 protein demonstrated that the conserved Val82 residue plays an important role in ligand binding.	2.37698e-35
CP033896.1\|AZA12824.1\|513728_514472_-\|hypothetical-protein	gnl\|CDD\|378046	pfam08768, DUF1794, Domain of unknown function (DUF1794). This domain forms a beta barrel structure but the function is unknown. The GO annotation for this protein indicates that the protein has a function in nematode larval development and has a positive regulation on growth rate.	3.92961e-44

>CP033896.1|AZA12815.1|502256_502562_+|CRISPR-associated-endoribonuclease-Cas2
MWSMVMFDVPTKTDVDRRNANRFRHFLVDEGFGRVQLSVYAQYYPNGARAVTVLKKIKQNLPPGGDVRILHITDKQWSTASRFSRTKAASIEEKPEVGVVF
>CP033896.1|AZA12814.1|501324_502233_+|CRISPR-associated-endonuclease-Cas1
MNLGWRVLDCSQLDGRLRYERGVMKVLDREGSELITAPLSQIAIVLIGVQSSISGALIAKFGEYDIALLVCDWRQEPVAGAMPWHDHSRIGARQVAQARLSAPRAKQAWKAIVKAKIAGQSCCLSSVRGISPISERLGELVGQVKSGDRSNAEGQAARIYWPAITEDPTFRRTPQCSDRGWNMYLNYGYTLLRGHGIRAVTAAGLCGTLGIFHHHRENAFALVDDLIEPFRPLIDYHIFSSFDELCELDRDSKKIIINCFDKPFNGNGKSLVTMLEEFAHHYGAYVEDKIERLVVPRWEGRR
>CP033896.1|AZA12813.1|498007_501328_+|CRISPR-associated-endonuclease-Cas9
MQVQKRYTVGLDVGSYSLGMAAIELNENGNPVSILSAVSHIHDAGLDPDQVKNATTRLAQSGLMRRTRRLYRERRRRSRKLHEFLVEQQWKTLPFESYADPYHPWRVRTMLVDSYVEDDVERGELLSIALRHIFNHRGWRNPYTRVQSLYNVAEPSENFEQIRNDLEGRYGVPIDRDITVAQLVSVAEFGKDRLRGAVKSKKNGNAKGAPENEVKEAVLSHRLQQSDNAREICRICQVQRIDDDLYKKIIDLVFDAKSPKGAQQERTGKDPFFPKEYRALKASDAFQRYRIASIIGNLRIREDDSNVPLDHDQRQQLFNFLVNHTGNNLPTWQDVAEELGIDRGLLRGTAAVTEDGERANSRPPIHETNRALTNCKVKPLASWWKSEDWPAREALVKALSNATKADFASPAGLKVEQFLRSVDDELLTEIDKLKLPIGRAAYGETTLIRLTNTMLENDLDLRGALEAEFNIPKNWSPPKPPINEPVGNPAVDRVLREAHRWIEAAVSQWGEPESVVVEDTRAGFTSEATRREIERGIEKRTKRNLALADQMRLELGIDGPIRRSDLWRYQSIQRQNAQCAYCGNPITFSASEMDHIVPRAGAGSTNVRENLVATCARCNRAKSNRPFANWARTCGIPGVSVDEAVERTRHWVRDSAMKTGEFKQFVKDVTDRFRRTEYDAPLDARSIESVGWMSIELRSRIMQRFPNARVDLYTGKTTSQARGASGITKHLEFIGGTGKSRLDRRHHAIDAAVIAMMRPYVAETLAIRNNIKFGEFLEHGGSDNRRWKEFIGEDQAHRQSWQRWMQAMHALLPLLQEALDQDRIPVTRNLRLRLGNGAVHKAEIHSLETVSLSTALTVEQIDRAATEALWCALTRHPDFDPKDGLSEDPQRQITVNGKLIKSDDQIELFPVQAASIRVRGGYAQLEKIHHVRFYRVPGKVKPKYFMLRVFVHDLVNFGGRDLFSVELAPQTQSVRHSRKILREALVDGTAEYLGWVVTGDELHLNPTVLPKSVTPLLEEFGHLHRWTIDGFPDERRIRLRSRLLSGEGAENLPEECRKVLTGRGVLTSVNALLAQGELMVVRRDALGRVRLGSRANLPVSWRLDRQ
>CP033896.1|AZA12812.1|497571_497835_+|hypothetical-protein
MGKVGIHRRQAIRTFTLGRQQSQGFGFTWRAYILVLVLVGVGISAFQTHFLTLISPLSIVVIGLAIDELGVSSFHIFVKEPLLNRLI
>CP033896.1|AZA12811.1|495728_497024_+|hypothetical-protein
MLKAIRRVDSIVDQFWFIPAVMSIIAALLAYLLIWLEQSFGVPSWLSFIYQGGESGARSLLSSMTSMSIGVAGTTFSITIAALSSVISSMGPRLLHSFVRDRGIQTTLGVFVATFVFSLSSLRAISAGENGAVFVPHYNVTVSMGFAALCVGFLVYYIAHMAMSISMSRNVYLLTADTKQAFDKATEEAADEHTMPTVDKTLFSGAEALTLDQSGYVQAIDYAGLAEYAAKHDLVIKLDIKPGDFIVRGQRIGKTTALIDPDVLHNMVFVGDTADPEHDVTYAVRQTVEVAVRALSPGTNDPYTATDVIRRLSQILAELKDRQLPSGIVTIDGEVRLVHDVVTFDELVDTMFSDIRRHAAGTVVVYTTLLEQFVALQHVITDPLRVGLLHAHGEAVYADAKRLVDNDKDMQVIESAYRKFKTVNAVTGQAV
>CP033896.1|AZA12810.1|493039_495388_+|Phosphoribosylformylglycinamidine-synthase-2
MAEHTSHFQDTVADATANPDQSQPYASLGLKDDEYARIKEILGRRPTDAELAMYSVMWSEHCSYKSSKVHLRYFGETTTEEMNSKILAGIGENAGVVDVGDGWAVTFRVESHNHPSYVEPHQGAATGVGGIVRDIMAMGARPIAVMDQLRFGPADAPDTQRVLPGVVDGVGGYGNCLGLPNIGGETVFDDCYAGNPLVNALCVGKLKKEDLKLAFASGLGNKVMLFGARTGLDGIGGVSVLASDSFEAGAERKLPAVQVGDPFAEKVLIECCLELYQAGVVVGIQDLGGAGLSCATSELAAAGDGGMQVNLDRVPLRAKNMTAAEILSSESQERMCAVVRPADVEKFQAICAHWDVTCAEIGEVTDGDHLIITHHGEVVVDAPAHTIAHQGPVYDRPYTRPDWQSEIQQQRELPLPQDSDAIRELILTMTASPALCSREFITNQYDRYVLGNTVLAKDADAGVLRIDEDTNRGVAVSADCSGRYTKLDPRTGAQLALAEAFRNVAVTGATPVAVTNCLNFGSPEDPAVMWQFREAVRGLADGCAELAIPVSGGNVSFYNQTGDQAIHPTPVVGVLGVISDVRRRIGHTLGTVDQPEELFLLGTTCQEFGGSILQQVMQDGELSGLPPQVDFAAEQALQALLSAQTEAETPVITAAHDLSEGGLGQALVEMAITARGGHVGVTVDLRGVHPDAVTALYSESAGRAVVATTAAHAGKLQELADAHGVPCVRLGTTGAAGNLAQLVITDGHDLHIEIPVQELADAWYGTLPDLFGHAVGANSVVE
>CP033896.1|AZA12809.1|491985_492663_+|Phosphoribosylformylglycinamidine-synthase-1
MSATIGVVTFPGTLDDGDARRAVKLGGATAKALWHADQDLSGVDAVIIPGGFSYGDYLRSGAISALAPMMTAVVEAAGKGMPVLGICNGFQILTEAGLLPGVLTRNQGLHFHCVDTYLTVEQADTAWTSQFTAGENILVPAKHGEGRFQASPETVAMLEDEGRVVFRYTDNFNGSINAIAGVCSENRRIVGLMPHPEHAIEQLTGPSTDGLKLIASVTQSLLETA
>CP033896.1|AZA12808.1|491734_491989_+|phosphoribosylformylglycinamidine-synthase-subunit-PurS
MARVVVNVMPKEEILDPQGQAVQRALGRIGITGVNDVRQGKRFVIEADDSLTAEQVQHMAETLLANTVVEDFEIVDVAVEGGKA
>CP033896.1|AZA12807.1|490514_491036_+|hypothetical-protein
MSELADNIFDTTVTTIDGDVFTVGNYEGHVLLLVIVDPDSDRLAQLAELQEVFDEFYMRGFFCVAVVTEDFATSPHSAEDIANTLRDDYGVTFPIVGPIPVTGEQQAELISVLLAAVNDADEDAVIMGRGPIAGGFEKFLIDPEGAVIGRFPARMEPSAHTIVDLIDSQVPVQ
>CP033896.1|AZA12806.1|489506_490400_+|Phosphoribosylaminoimidazole-succinocarboxamide-synthase
MRAELSDYTHLTAGKVREIYEIDDDTLLMVASDRISAYDHVLDTEIPDKGRILTAMSCYYFDQLDFPNHLAGAADDPRIPEEVLGRALLTHRLSMIPFECVARGYLTGSALAEYRETGKVCGITLPAGLTESSRLPEPIFTPATKADIGDHDENVTFEQVVEVLGQDRAEELRDATLSLYTAAAEMALAHGLILADTKFEFGLDKAGHMLLADEVLTPDSSRYWPLRDYKEGQIQPSFDKQYVRDWLTSPKSGWDKRSNTQPPELPGSVVEATRQRYIEAYEQVSGRKFSDWIGCCV
>CP033896.1|AZA12816.1|504725_505679_-|putative-acyl-CoA-thioester-hydrolase
MAAPTDVITAGAFGVDGGRVLEWIDKAAYACATAWSGRYCVTAYVGHIHFTRPIPVGHIVEVRSRIALTGRSSMHIVNEVLSADPREGVFTRACDCLVIFVAKDEETNKAVAVPTFTPETPAEQRLNEVATRRIDLRNAIEEEMAKQTYDGPSDAPRLITRFLASPNDVNWGGNVHGGTAMEWIIESATACTMEFSGERTVAVYAGGIRFYAPIHIGDLVEVDSRIMRTDTRSMQVSVHVRSGKPTGGRENLRTAIHAAVTFVGIDIDGYPLPARQFIPQTAEDKRLHEHADTLRKLRAAYAPEPLVDNADGNNTAS
>CP033896.1|AZA12817.1|506087_506708_+|hypothetical-protein
MAGGDALAGCWNWGKVLLRVEMLWRTSRKMVWVIKVWMVNRMAVFSVWCALRSGETGILVDTVAKLQRMTGKRIDPQQLREAVMAILPWIADPATQPEPTRPQLAAACRMLARTAAQDAPGKTVELRVPPFVAVQLIDGPAHTRGTPPNVVQLDPLTFCRLACGWITMADIVATSSPLIEISGTRAQLVDEVMPVVDGQKLMSAAV
>CP033896.1|AZA12818.1|506840_508391_+|Amidophosphoribosyltransferase-precursor
MASQQPRQASACSTRQGGYSGGLASPLDDQGETAPREECGVFGVWAPGEDVAKLTYYGLYALQHRGQEAAGIAVGDGDQIVVFKDLGLVSQIFDEQSLGALKGDLAIGHTRYSTAGGACWNNAQPMFRMAKNGTDVALGHNGNLVNYLQLLDIAHDKELVDKEQAPSDSDVLCALLADGIDDKTSLEQSALALLPQVEGAFCLTFTDGNTLYAARDRNGVRPLSLGRLERGWVVASETAALDIVGASFVREIAPGELVAIDATGVHSTRFADTTHKGCVFEYVYLARPDSVIRGRAVNATRVEIGQRLAKQYPADADLVIPVPDSGTPAAVGYAQGSGIPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVINGKRLVVVDDSLVRGNTQRALIRMLREAGAREVHVRIASPPVKWPCFYGIDFATPGELVANAVDTADEAAMVESVRTAIGADSLGYVSIENMVESTRQTRSELCCACFDGDYPLGLPEGNPNAALVRKLQTPAASAEQ
>CP033896.1|AZA12819.1|508530_509643_+|Phosphoribosylformylglycinamidine-cyclo-ligase
MTNQPHNPASTTPAAAPQPAPEGVSYAAAGVDIVAGDQAVELIGPLAKRATREEVTGGIGGFAGLFKLKQYEEPLLAAGSDGVGTKLVIAQAMDKHDTIGIDLVAMCVDDLVVCGAEPLFLQDYIAIGKVIPEKVATIVSGIAEGCVQAGCALLGGETAEHPGVMEPDHYDVSATAVGVVEAAQLLGPDKVRTGDVVIGMAASGLHSNGYSLARHVLLEIAGLDLHSHVEELGRTLGEELLEPTKIYAKDCLALASECDVHTFCHVTGGGLAGNLARVIPDGYTATLHRAAITPNQIFRVIEDLGKVSREEMEKTFNMGVGMVAVVAAEDADRAMAMLTARHVDSFILGEVHTAAADEPRVVLTGDYADE
>CP033896.1|AZA12820.1|510332_510530_-|hypothetical-protein
MGRGRAKAKQAKVARQLKYNIPDMDLDQLQRELKGNSSDHENYGADDYDDDYDKWSDWADEAPQR
>CP033896.1|AZA12821.1|510961_512176_-|Aminomethyltransferase-folate-binding-domain-protein
MTNEATLTPPNDGHTPAMVESADSAATGFLTRDYGGLIVDFAADVPATLRPSYQGDATVPWHYGDPFGEQAAIAAGTRPRVIVTDEQHAVRISGADAPDLLHRLTTQHFLGDTTSINGAGLLTLSAQGHINQQLTVFTGDDTAIYGVGAAADVTAFSDHVTRMKFWSDVTVTPTVLNRVVILGGTASHHGQLAANPALQPLVTVAAHITWAGLCRTDLLVDPQHLPALITTLTGDGISLAGMMAYEALRIAAGIARREPDLAANSIPHESHHLLGRGATPAAVHLDKGCYPGQETVARVENLGQPPKLLVVAHLDGSAPQLPAPGTAISNGRRTVGTIGSVIEHHEYGPIALALVKRSAVGKTGTLTAAGQSIAIDPDSLPPDSGPKAGRVALAKLRGLDPTDD
>CP033896.1|AZA12822.1|512216_513353_+|4-amino-4-deoxychorismate-lyase
MPFSTPKPVIVIVDPLGGSARAHNPTMPHIFFDDAAVTRGDAVFETLLVSAGKPVGLSAHLQRFSNSCVALGLPNPQQEQWITATEIAVAQFNQQATTDARCTWTLSRGRAATGQPTGWVTVTAIPAAQLTAREQGVKVLTACRGYTIDRGDDAAPWQLAAVKSVNYQAAMAAVRWAQDNGADDVIFTSSDGLLQEATTAALLVVQGKTLLTPKPDRHILPSTTIGALFDYAPSQGYTVQYKKIKKKDVLKADSVWLVSAVRMAARVRSIDGEKLAKPDNPGAIPALVAQALAAAAVVVDERAAHRLDSPVQRPAGKAFDAHADIDAAVGAAGLLGEHGNANGDGAAQSTGTAKTGGKSQDSAGREEKSKDKKHRKRK
>CP033896.1|AZA12823.1|513467_513704_+|hypothetical-protein
MHSGAQDTTSLAPKKAVTDHRGRIGQGLLAAHGLQPVPRVRCLFLQQLRLLLAGVSYSCNVVFFLTDAAPAAACLFLL
>CP033896.1|AZA12824.1|513728_514472_-|hypothetical-protein
MSENDTNPQHSEEATGATAADAATTTGPVVDTAADAQAAAPQSPFLSGSAAVNLAAEQSKITAEKNIPNLEGLPVADDTANLRQGPNLHDGLLALLPLIGVWEGQGQADTAEGGSYPFGQRLTFAHNGENYISYSSKIYKLDEHGEAIGWAEQEAGFLRISESDEMEFVITHAAGAVEIFYGDPLNERAWQFETASTMVTATGPKALGPGKRLYGLMPNNDLGWVDERVVDGELLPRMSAQLRRIVG
>CP033896.1|AZA12825.1|514612_515695_+|Mycothiol-acetyltransferase
MAFRIETYSQPLSDDLQTTLLSVIDEATSVDGIAAISEQFRRAITDGRTDSTAAVTVYGVVDTSEQTQPIVAVAVQRDAQAECVVAPHSRNAGIGSQLLAHLFAAGVVDVWAHGQHPAAVHLAKQLGLSITRELLVLASDNDNAARVVAKQQDTTGLMTLPAQRRFTTYEQACSVADPTAVAAAWVAVNNAAFDWHPEQGGWSQATLQRAMEVDWFDPNSVHLLWDTAAEPGAEIHPPAADANHDPEVVAGLGRLAGFHWVKRHPDGVGEVYVIGIAPHYQGTGLFRPLMAQGLRDLLQGRAGAPAVTKIVLYVEADNTPAVAGYRRLGFTTAETHVVFHRHNDGKDTPGTSGAAEAAGD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	MT952853	Arthrobacter phage Orcanus, complete genome	5113-5140	3	0.893
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	MT889373	Arthrobacter phage Brynnie, complete genome	5153-5180	3	0.893
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	KU160644	Arthrobacter phage Galaxy, complete genome	5102-5129	3	0.893
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	MF140397	Arthrobacter phage Abidatro, complete genome	5093-5120	3	0.893
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	NC_048098	Arthrobacter phage Andrew, complete genome	5094-5121	4	0.857
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	MN703409	Arthrobacter phage LittleTokyo, complete genome	5045-5072	4	0.857
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	NZ_CP024313	Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence	136309-136336	4	0.857
CP033896_1	1.43\|174950\|32\|CP033896\|CRISPRCasFinder,CRT	174950-174981	32	NZ_CP045288	Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence	32273-32304	5	0.844
CP033896_1	1.43\|174950\|32\|CP033896\|CRISPRCasFinder,CRT	174950-174981	32	CP041260	Curtobacterium flaccumfaciens pv. flaccumfaciens strain Cff1037 plasmid pCFF113, complete sequence	26704-26735	5	0.844
CP033896_2	2.3\|502777\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	502777-502804	28	NZ_CP023549	Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence	82153-82180	5	0.821
CP033896_2	2.3\|502777\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	502777-502804	28	NZ_CP004394	Celeribacter indicus strain P73 plasmid pP73A, complete sequence	69825-69852	5	0.821
CP033896_2	2.3\|502777\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	502777-502804	28	NZ_CP004394	Celeribacter indicus strain P73 plasmid pP73A, complete sequence	104277-104304	5	0.821
CP033896_2	2.7\|503033\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503033-503060	28	NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	606995-607022	5	0.821
CP033896_2	2.7\|503033\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503033-503060	28	NZ_CP049733	Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence	594685-594712	5	0.821
CP033896_2	2.7\|503033\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503033-503060	28	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	575052-575079	5	0.821
CP033896_2	2.7\|503033\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503033-503060	28	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	569811-569838	5	0.821
CP033896_2	2.7\|503033\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503033-503060	28	NZ_CP053207	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence	625684-625711	5	0.821
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	MG812490	Mycobacterium phage Holeinone, complete genome	26545-26572	5	0.821
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	MN813678	Mycobacterium phage Lephleur, complete genome	26563-26590	5	0.821
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	MH590591	Mycobacterium phage Sabella, complete genome	26557-26584	5	0.821
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	MH727546	Mycobacterium phage Eaglehorse, complete genome	26593-26620	5	0.821
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	NZ_CP021116	Rhodobacteraceae bacterium strain G7 plasmid unnamed2, complete sequence	14296-14323	5	0.821
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	673007-673034	5	0.821
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	MK814759	Gordonia phage Reyja, complete genome	4224-4251	5	0.821
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	KX557278	Gordonia phage Ghobes, complete genome	3591-3618	5	0.821
CP033896_1	1.15\|174766\|33\|CP033896\|PILER-CR	174766-174798	33	NC_017385	Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence	70974-71006	6	0.818
CP033896_1	1.15\|174766\|33\|CP033896\|PILER-CR	174766-174798	33	NZ_CP012910	Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence	174009-174041	6	0.818
CP033896_1	1.15\|174766\|33\|CP033896\|PILER-CR	174766-174798	33	NC_014626	Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence	122186-122218	6	0.818
CP033896_1	1.18\|174949\|33\|CP033896\|PILER-CR	174949-174981	33	NZ_CP045288	Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence	32273-32305	6	0.818
CP033896_1	1.18\|174949\|33\|CP033896\|PILER-CR	174949-174981	33	CP041260	Curtobacterium flaccumfaciens pv. flaccumfaciens strain Cff1037 plasmid pCFF113, complete sequence	26704-26736	6	0.818
CP033896_1	1.45\|175072\|32\|CP033896\|CRISPRCasFinder,CRT	175072-175103	32	MN961673	Pseudomonas aeruginosa strain PA15W plasmid pPA15W-IMP, complete sequence	21337-21368	6	0.812
CP033896_1	1.45\|175072\|32\|CP033896\|CRISPRCasFinder,CRT	175072-175103	32	NZ_MF564291	Pseudomonas putida strain KSS14 plasmid pVIM_Pse-KSS14, complete sequence	11030-11061	6	0.812
CP033896_2	2.3\|502777\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	502777-502804	28	NC_015951	Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete sequence	145679-145706	6	0.786
CP033896_2	2.4\|502841\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	502841-502868	28	NZ_CP021805	Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence	951255-951282	6	0.786
CP033896_2	2.7\|503033\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503033-503060	28	MN813682	Microbacterium phage Matzah, complete genome	20419-20446	6	0.786
CP033896_2	2.7\|503033\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503033-503060	28	MK937591	Microbacterium phage Cinna, complete genome	20443-20470	6	0.786
CP033896_2	2.7\|503033\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503033-503060	28	AF447491	Bacteriophage phiE125, complete genome	19954-19981	6	0.786
CP033896_2	2.7\|503033\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503033-503060	28	NC_003309	Burkholderia phage phiE125, complete genome	19954-19981	6	0.786
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	NC_002682	Mesorhizobium japonicum MAFF 303099 plasmid pMLb, complete sequence	155238-155265	6	0.786
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1245951-1245978	6	0.786
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	NZ_CP013553	Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence	68812-68839	6	0.786
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	NZ_CP013586	Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence	74731-74758	6	0.786
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	NZ_CP013559	Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence	68852-68879	6	0.786
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	NZ_CP013564	Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence	68812-68839	6	0.786
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	NZ_CP030127	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence	1116649-1116676	6	0.786
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	MN813685	Gordonia phage Gudmit, complete genome	4728-4755	6	0.786
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	MT521995	Gordonia phage Moosehead, complete genome	3954-3981	6	0.786
CP033896_1	1.40\|174767\|32\|CP033896\|CRISPRCasFinder,CRT	174767-174798	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	389534-389565	7	0.781
CP033896_1	1.40\|174767\|32\|CP033896\|CRISPRCasFinder,CRT	174767-174798	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1423533-1423564	7	0.781
CP033896_1	1.50\|175377\|32\|CP033896\|CRISPRCasFinder,CRT	175377-175408	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1322818-1322849	7	0.781
CP033896_1	1.50\|175377\|32\|CP033896\|CRISPRCasFinder,CRT	175377-175408	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	490716-490747	7	0.781
CP033896_2	2.3\|502777\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	502777-502804	28	NZ_CP017423	Arthrobacter sp. ZXY-2 plasmid pZXY22, complete sequence	67418-67445	7	0.75
CP033896_2	2.4\|502841\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	502841-502868	28	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	488413-488440	7	0.75
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	NZ_CP036456	Streptomonospora sp. M2 plasmid phiM2, complete sequence	46936-46963	7	0.75
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	NC_020548	Azoarcus sp. KH32C plasmid pAZKH, complete sequence	572728-572755	7	0.75
CP033896_2	2.11\|503289\|28\|CP033896\|CRISPRCasFinder,CRT	503289-503316	28	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1266324-1266351	7	0.75
CP033896_1	1.15\|174766\|33\|CP033896\|PILER-CR	174766-174798	33	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	216114-216146	8	0.758
CP033896_1	1.19\|175010\|33\|CP033896\|PILER-CR	175010-175042	33	NZ_CP019486	Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence	781676-781708	8	0.758
CP033896_1	1.32\|174278\|32\|CP033896\|CRISPRCasFinder,CRT	174278-174309	32	NZ_CP022565	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence	67783-67814	8	0.75
CP033896_1	1.39\|174706\|32\|CP033896\|CRISPRCasFinder,CRT	174706-174737	32	NZ_CP007797	Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence	632668-632699	8	0.75
CP033896_1	1.39\|174706\|32\|CP033896\|CRISPRCasFinder,CRT	174706-174737	32	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	571418-571449	8	0.75
CP033896_1	1.39\|174706\|32\|CP033896\|CRISPRCasFinder,CRT	174706-174737	32	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	156774-156805	8	0.75
CP033896_1	1.40\|174767\|32\|CP033896\|CRISPRCasFinder,CRT	174767-174798	32	NC_017385	Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence	70975-71006	8	0.75
CP033896_1	1.40\|174767\|32\|CP033896\|CRISPRCasFinder,CRT	174767-174798	32	NZ_CP012910	Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence	174009-174040	8	0.75
CP033896_1	1.40\|174767\|32\|CP033896\|CRISPRCasFinder,CRT	174767-174798	32	NC_014626	Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence	122187-122218	8	0.75
CP033896_1	1.40\|174767\|32\|CP033896\|CRISPRCasFinder,CRT	174767-174798	32	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	216114-216145	8	0.75
CP033896_1	1.41\|174828\|32\|CP033896\|CRISPRCasFinder,CRT	174828-174859	32	NZ_CP046163	Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence	727245-727276	8	0.75
CP033896_1	1.41\|174828\|32\|CP033896\|CRISPRCasFinder,CRT	174828-174859	32	NZ_CP046066	Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence	910631-910662	8	0.75
CP033896_1	1.41\|174828\|32\|CP033896\|CRISPRCasFinder,CRT	174828-174859	32	NZ_CP045356	Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence	849272-849303	8	0.75
CP033896_2	2.9\|503161\|28\|CP033896\|PILER-CR,CRISPRCasFinder,CRT	503161-503188	28	NZ_CP049837	Gordonia terrae strain RL-JC02 plasmid pPAE01, complete sequence	41738-41765	8	0.714
CP033896_1	1.29\|174095\|32\|CP033896\|CRISPRCasFinder,CRT	174095-174126	32	NZ_KM017071	Sphingomonas sp. JE1 plasmid pJE1, complete sequence	187516-187547	9	0.719
CP033896_1	1.38\|174645\|32\|CP033896\|CRISPRCasFinder,CRT	174645-174676	32	NZ_CP017591	Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ10, complete sequence	215003-215034	9	0.719
CP033896_1	1.38\|174645\|32\|CP033896\|CRISPRCasFinder,CRT	174645-174676	32	NZ_CP049116	Pantoea stewartii strain ZJ-FGZX1 plasmid unnamed1, complete sequence	202715-202746	9	0.719
CP033896_1	1.49\|175316\|32\|CP033896\|CRISPRCasFinder,CRT	175316-175347	32	NC_014825	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL02, complete sequence	52764-52795	9	0.719
CP033896_1	1.38\|174645\|32\|CP033896\|CRISPRCasFinder,CRT	174645-174676	32	NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	1027018-1027049	10	0.688
CP033896_1	1.39\|174706\|32\|CP033896\|CRISPRCasFinder,CRT	174706-174737	32	NZ_CP050953	Rhodococcus sp. DMU1 plasmid unnamed	703934-703965	10	0.688
CP033896_1	1.39\|174706\|32\|CP033896\|CRISPRCasFinder,CRT	174706-174737	32	NZ_CP016621	Microvirga ossetica strain V5/3m plasmid unnamed5, complete sequence	25119-25150	10	0.688
CP033896_1	1.44\|175011\|32\|CP033896\|CRISPRCasFinder,CRT	175011-175042	32	NZ_CP019486	Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence	781677-781708	10	0.688
CP033896_1	1.48\|175255\|32\|CP033896\|CRISPRCasFinder,CRT	175255-175286	32	NC_011879	Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence	107367-107398	10	0.688
CP033896_1	1.48\|175255\|32\|CP033896\|CRISPRCasFinder,CRT	175255-175286	32	MF140414	Mycobacterium phage Krypton555, complete genome	69374-69405	10	0.688
CP033896_1	1.48\|175255\|32\|CP033896\|CRISPRCasFinder,CRT	175255-175286	32	MF766044	Streptomyces phage Amethyst, complete genome	10557-10588	10	0.688
CP033896_1	1.48\|175255\|32\|CP033896\|CRISPRCasFinder,CRT	175255-175286	32	NC_022052	Mycobacterium phage Whirlwind, complete genome	69250-69281	10	0.688

1. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to MT952853 (Arthrobacter phage Orcanus, complete genome) position: , mismatch: 3, identity: 0.893

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
tacgaggtgtcggtggtgcctatcggtg	Protospacer
* .***************** *******

2. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to MT889373 (Arthrobacter phage Brynnie, complete genome) position: , mismatch: 3, identity: 0.893

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
tacgaggtgtcggtggtgcctatcggtg	Protospacer
* .***************** *******

3. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to KU160644 (Arthrobacter phage Galaxy, complete genome) position: , mismatch: 3, identity: 0.893

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
tacgaggtgtcggtggtgcctatcggtg	Protospacer
* .***************** *******

4. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to MF140397 (Arthrobacter phage Abidatro, complete genome) position: , mismatch: 3, identity: 0.893

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
tacgaggtgtcggtggtgcctatcggtg	Protospacer
* .***************** *******

5. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NC_048098 (Arthrobacter phage Andrew, complete genome) position: , mismatch: 4, identity: 0.857

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
tacgaggtttcggtggtgcctatcggtg	Protospacer
* .***** *********** *******

6. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to MN703409 (Arthrobacter phage LittleTokyo, complete genome) position: , mismatch: 4, identity: 0.857

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
tacgaggtttcggtggtgcctatcggtg	Protospacer
* .***** *********** *******

7. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024313 (Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence) position: , mismatch: 4, identity: 0.857

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
tatgacgtgtcggtgctgccgatcggag	Protospacer
* *** ********* ********** *

8. spacer 1.43|174950|32|CP033896|CRISPRCasFinder,CRT matches to NZ_CP045288 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence) position: , mismatch: 5, identity: 0.844

ctggtaaagcggcgctgatcgctacagccacc--	CRISPR spacer
ccggtaaagcggcgctaagcgctaca--caccag	Protospacer
*.**************.* *******  ****

9. spacer 1.43|174950|32|CP033896|CRISPRCasFinder,CRT matches to CP041260 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain Cff1037 plasmid pCFF113, complete sequence) position: , mismatch: 5, identity: 0.844

ctggtaaagcggcgctgatcgctacagccacc--	CRISPR spacer
ccggtaaagcggcgctaagcgctaca--caccag	Protospacer
*.**************.* *******  ****

10. spacer 2.3|502777|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023549 (Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.821

ctaccgggctcaccccgcaggcctcgga	CRISPR spacer
gcaccgggctcacgccgcaggccgcggc	Protospacer
 .*********** ********* ***

11. spacer 2.3|502777|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP004394 (Celeribacter indicus strain P73 plasmid pP73A, complete sequence) position: , mismatch: 5, identity: 0.821

ctaccgggctcaccccgcaggcctcgga	CRISPR spacer
ccaccgggctctgcccgcaggcctccgt	Protospacer
*.*********  ************ *

12. spacer 2.3|502777|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP004394 (Celeribacter indicus strain P73 plasmid pP73A, complete sequence) position: , mismatch: 5, identity: 0.821

ctaccgggctcaccccgcaggcctcgga	CRISPR spacer
ccaccgggctctgcccgcaggcctccgt	Protospacer
*.*********  ************ *

13. spacer 2.7|503033|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050083 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence) position: , mismatch: 5, identity: 0.821

gtgctgaaagacaatgcggcggcggtgc	CRISPR spacer
ggccagagagagaatgcggcggcggtgc	Protospacer
*  * **.*** ****************

14. spacer 2.7|503033|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049733 (Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence) position: , mismatch: 5, identity: 0.821

gtgctgaaagacaatgcggcggcggtgc	CRISPR spacer
ggccagagagagaatgcggcggcggtgc	Protospacer
*  * **.*** ****************

15. spacer 2.7|503033|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 5, identity: 0.821

gtgctgaaagacaatgcggcggcggtgc	CRISPR spacer
gtgctgaaagacaaggcggccgcactcc	Protospacer
************** ***** **. * *

16. spacer 2.7|503033|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 5, identity: 0.821

gtgctgaaagacaatgcggcggcggtgc	CRISPR spacer
gtgctgaaagataaagcggcggcacttc	Protospacer
***********.** ********. * *

17. spacer 2.7|503033|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053207 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence) position: , mismatch: 5, identity: 0.821

gtgctgaaagacaatgcggcggcggtgc	CRISPR spacer
ggccagagagagaatgcggcggcggtgc	Protospacer
*  * **.*** ****************

18. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to MG812490 (Mycobacterium phage Holeinone, complete genome) position: , mismatch: 5, identity: 0.821

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
tttggggtgtcggaggtgccgatcctcg	Protospacer
****.******** **********  .*

19. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to MN813678 (Mycobacterium phage Lephleur, complete genome) position: , mismatch: 5, identity: 0.821

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
tttggggtgtcggaggtgccgatcctcg	Protospacer
****.******** **********  .*

20. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to MH590591 (Mycobacterium phage Sabella, complete genome) position: , mismatch: 5, identity: 0.821

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
tttggggtgtcggaggtgccgatcctcg	Protospacer
****.******** **********  .*

21. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to MH727546 (Mycobacterium phage Eaglehorse, complete genome) position: , mismatch: 5, identity: 0.821

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
tttggggtgtcggaggtgccgatcctcg	Protospacer
****.******** **********  .*

22. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021116 (Rhodobacteraceae bacterium strain G7 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.821

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
taggaaatgtcggtggtgccgatcagtg	Protospacer
*  **..*****************.***

23. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 5, identity: 0.821

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
taggggatgtcggtggtgccgatcagtg	Protospacer
*  *.*.*****************.***

24. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 5, identity: 0.821

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
tacgaggtgtcggtcgtcccgatcggcg	Protospacer
* .*********** ** ********.*

25. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to KX557278 (Gordonia phage Ghobes, complete genome) position: , mismatch: 5, identity: 0.821

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
tacgaggtctcggtggtcccgatcggcg	Protospacer
* .***** ******** ********.*

26. spacer 1.15|174766|33|CP033896|PILER-CR matches to NC_017385 (Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.818

cagccgcca-caaccccagcaccgtcatcaccag	CRISPR spacer
-gggcgcgagcaaccccagcaccgccatccccag	Protospacer
 .* *** * **************.**** ****

27. spacer 1.15|174766|33|CP033896|PILER-CR matches to NZ_CP012910 (Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.818

cagccgcca-caaccccagcaccgtcatcaccag	CRISPR spacer
-gggcgcgagcaaccccagcaccgccatccccag	Protospacer
 .* *** * **************.**** ****

28. spacer 1.15|174766|33|CP033896|PILER-CR matches to NC_014626 (Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence) position: , mismatch: 6, identity: 0.818

cagccgcca-caaccccagcaccgtcatcaccag	CRISPR spacer
-gggcgcgagcaaccccagcaccgccatccccag	Protospacer
 .* *** * **************.**** ****

29. spacer 1.18|174949|33|CP033896|PILER-CR matches to NZ_CP045288 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence) position: , mismatch: 6, identity: 0.818

gctggtaaagcggcgctgatcgctacagccacc--	CRISPR spacer
cccggtaaagcggcgctaagcgctaca--caccag	Protospacer
 *.**************.* *******  ****

30. spacer 1.18|174949|33|CP033896|PILER-CR matches to CP041260 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain Cff1037 plasmid pCFF113, complete sequence) position: , mismatch: 6, identity: 0.818

gctggtaaagcggcgctgatcgctacagccacc--	CRISPR spacer
cccggtaaagcggcgctaagcgctaca--caccag	Protospacer
 *.**************.* *******  ****

31. spacer 1.45|175072|32|CP033896|CRISPRCasFinder,CRT matches to MN961673 (Pseudomonas aeruginosa strain PA15W plasmid pPA15W-IMP, complete sequence) position: , mismatch: 6, identity: 0.812

aagcccctgagctgtacgaagccggacgcggc-	CRISPR spacer
cagccgccgagctgtacgaagcc-gccgcgtca	Protospacer
 **** *.*************** * **** *

32. spacer 1.45|175072|32|CP033896|CRISPRCasFinder,CRT matches to NZ_MF564291 (Pseudomonas putida strain KSS14 plasmid pVIM_Pse-KSS14, complete sequence) position: , mismatch: 6, identity: 0.812

aagcccctgagctgtacgaagccggacgcggc-	CRISPR spacer
cagccgccgagctgtacgaagcc-gccgcgtca	Protospacer
 **** *.*************** * **** *

33. spacer 2.3|502777|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NC_015951 (Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete sequence) position: , mismatch: 6, identity: 0.786

ctaccgggctcaccccgcaggcctcgga	CRISPR spacer
ctgccgggctcacgccgcaggccggcgg	Protospacer
**.********** *********   *.

34. spacer 2.4|502841|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021805 (Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.786

gtgccgctgcagccactgtgacagacaa	CRISPR spacer
ctgacgccgcagccactgtgacaggcct	Protospacer
 ** ***.****************.*

35. spacer 2.7|503033|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to MN813682 (Microbacterium phage Matzah, complete genome) position: , mismatch: 6, identity: 0.786

gtgctgaaagacaatgcggcggcggtgc	CRISPR spacer
cccgtgaacgacgatgcggcggcggtgc	Protospacer
 .  **** ***.***************

36. spacer 2.7|503033|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to MK937591 (Microbacterium phage Cinna, complete genome) position: , mismatch: 6, identity: 0.786

gtgctgaaagacaatgcggcggcggtgc	CRISPR spacer
cccgtgaacgacgatgcggcggcggtgc	Protospacer
 .  **** ***.***************

37. spacer 2.7|503033|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to AF447491 (Bacteriophage phiE125, complete genome) position: , mismatch: 6, identity: 0.786

gtgctgaaagacaatgcggcggcggtgc	CRISPR spacer
caagtgaacgacaacgcggcggcggtgc	Protospacer
  . **** *****.*************

38. spacer 2.7|503033|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NC_003309 (Burkholderia phage phiE125, complete genome) position: , mismatch: 6, identity: 0.786

gtgctgaaagacaatgcggcggcggtgc	CRISPR spacer
caagtgaacgacaacgcggcggcggtgc	Protospacer
  . **** *****.*************

39. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NC_002682 (Mesorhizobium japonicum MAFF 303099 plasmid pMLb, complete sequence) position: , mismatch: 6, identity: 0.786

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
gtgatggtgtcggtggtgccgatgggtc	Protospacer
 * . ****************** ***

40. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 6, identity: 0.786

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
gtgaaggtgtcggtggtgccgagcggga	Protospacer
 * .****************** *** .

41. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013553 (Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence) position: , mismatch: 6, identity: 0.786

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
cctgatgtgttggtggtgccgatcgtcg	Protospacer
..*** ****.************** .*

42. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013586 (Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence) position: , mismatch: 6, identity: 0.786

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
cctgatgtgttggtggtgccgatcgtcg	Protospacer
..*** ****.************** .*

43. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013559 (Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence) position: , mismatch: 6, identity: 0.786

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
cctgatgtgttggtggtgccgatcgtcg	Protospacer
..*** ****.************** .*

44. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013564 (Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence) position: , mismatch: 6, identity: 0.786

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
cctgatgtgttggtggtgccgatcgtcg	Protospacer
..*** ****.************** .*

45. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
gtgccggtgtcgatggtgccgatctgtg	Protospacer
 *   *******.*********** ***

46. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to MN813685 (Gordonia phage Gudmit, complete genome) position: , mismatch: 6, identity: 0.786

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
cacgaggtctcggtggtgccgctcggcg	Protospacer
. .***** ************ ****.*

47. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to MT521995 (Gordonia phage Moosehead, complete genome) position: , mismatch: 6, identity: 0.786

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
cacgaggtttcggtggtgccgctcggcg	Protospacer
. .***** ************ ****.*

48. spacer 1.40|174767|32|CP033896|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.781

----agccgccacaaccccagcaccgtcatcaccag	CRISPR spacer
cccgcgccg----aacagcagcaccgtcatcaccag	Protospacer
     ****    ***  ******************

49. spacer 1.40|174767|32|CP033896|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.781

----agccgccacaaccccagcaccgtcatcaccag	CRISPR spacer
cccgcgccg----aacagcagcaccgtcatcaccag	Protospacer
     ****    ***  ******************

50. spacer 1.50|175377|32|CP033896|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.781

-cacgtggtggtggggggtgacgtgcctggtgg	CRISPR spacer
gcac-cggtggtggcgggtgatgtgcctgaccg	Protospacer
 *** .******** ******.*******.. *

51. spacer 1.50|175377|32|CP033896|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.781

-cacgtggtggtggggggtgacgtgcctggtgg	CRISPR spacer
gcac-cggtggtggcgggtgatgtgcctgaccg	Protospacer
 *** .******** ******.*******.. *

52. spacer 2.3|502777|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017423 (Arthrobacter sp. ZXY-2 plasmid pZXY22, complete sequence) position: , mismatch: 7, identity: 0.75

ctaccgggctcaccccgcaggcctcgga	CRISPR spacer
cccgttggctcaccccgcaggccacggc	Protospacer
*.  . ***************** ***

53. spacer 2.4|502841|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.75

gtgccgctgcagccactgtgacagacaa	CRISPR spacer
atgccgctgcagccgctgtgacggcgcc	Protospacer
.*************.*******.*

54. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036456 (Streptomonospora sp. M2 plasmid phiM2, complete sequence) position: , mismatch: 7, identity: 0.75

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
gcggaggtgtgggtggtgcggatcggca	Protospacer
 . ******* ******** ******..

55. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NC_020548 (Azoarcus sp. KH32C plasmid pAZKH, complete sequence) position: , mismatch: 7, identity: 0.75

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
ccgaagatgtcggtggtgccgatcgatc	Protospacer
.. .**.******************.*

56. spacer 2.11|503289|28|CP033896|CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

gggcagatgatcgagacagcgctgggtg	CRISPR spacer
aagctgatgatcgcgacagcgctggtat	Protospacer
..** ******** ***********

57. spacer 1.15|174766|33|CP033896|PILER-CR matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.758

cagccgccacaaccccagcaccgtcatcaccag	CRISPR spacer
ccgccgccacgaccgcagcaccgtcagcccatc	Protospacer
* ********.*** *********** * *

58. spacer 1.19|175010|33|CP033896|PILER-CR matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.758

ggaaccac----ccgccatatccatcgaagaactgga	CRISPR spacer
----ccgctttttcgacatatccatcgaagaacggga	Protospacer
    **.*    .** ***************** ***

59. spacer 1.32|174278|32|CP033896|CRISPRCasFinder,CRT matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 8, identity: 0.75

tgctcacgcccccaccatccaggaatcgacgg	CRISPR spacer
ggcggccagccccgccatccaggtatcgacgg	Protospacer
 **   *. ****.********* ********

60. spacer 1.39|174706|32|CP033896|CRISPRCasFinder,CRT matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgcgtccgagatcatctcgtccgacacttt	CRISPR spacer
tgcgcgtccgagatggtctcgtccagaacggt	Protospacer
 ************* .********.. **  *

61. spacer 1.39|174706|32|CP033896|CRISPRCasFinder,CRT matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgcgtccgagatcatctcgtccgacacttt	CRISPR spacer
tgcgcgtccgagatggtctcgtccagaacggt	Protospacer
 ************* .********.. **  *

62. spacer 1.39|174706|32|CP033896|CRISPRCasFinder,CRT matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgcgtccgagatcatctcgtccgacacttt	CRISPR spacer
tgcgcgtccgagatggtctcgtccagaacggt	Protospacer
 ************* .********.. **  *

63. spacer 1.40|174767|32|CP033896|CRISPRCasFinder,CRT matches to NC_017385 (Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.75

agccgccacaaccccagcaccgtcatcaccag	CRISPR spacer
ggcgcgagcaaccccagcaccgccatccccag	Protospacer
.**    .**************.**** ****

64. spacer 1.40|174767|32|CP033896|CRISPRCasFinder,CRT matches to NZ_CP012910 (Ketogulonicigenium vulgare strain Hbe602 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.75

agccgccacaaccccagcaccgtcatcaccag	CRISPR spacer
ggcgcgagcaaccccagcaccgccatccccag	Protospacer
.**    .**************.**** ****

65. spacer 1.40|174767|32|CP033896|CRISPRCasFinder,CRT matches to NC_014626 (Ketogulonicigenium vulgare Y25 plasmid pYP12, complete sequence) position: , mismatch: 8, identity: 0.75

agccgccacaaccccagcaccgtcatcaccag	CRISPR spacer
ggcgcgagcaaccccagcaccgccatccccag	Protospacer
.**    .**************.**** ****

66. spacer 1.40|174767|32|CP033896|CRISPRCasFinder,CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

agccgccacaaccccagcaccgtcatcaccag	CRISPR spacer
cgccgccacgaccgcagcaccgtcagcccatc	Protospacer
 ********.*** *********** * *

67. spacer 1.41|174828|32|CP033896|CRISPRCasFinder,CRT matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 8, identity: 0.75

----acccgatccgaatactccataccaaaacatcc	CRISPR spacer
tggaacatg----gaatactccagagcaaaacatcc	Protospacer
    ** .*    ********** * **********

68. spacer 1.41|174828|32|CP033896|CRISPRCasFinder,CRT matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 8, identity: 0.75

----acccgatccgaatactccataccaaaacatcc	CRISPR spacer
tggaacatg----gaatactccagagcaaaacatcc	Protospacer
    ** .*    ********** * **********

69. spacer 1.41|174828|32|CP033896|CRISPRCasFinder,CRT matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 8, identity: 0.75

----acccgatccgaatactccataccaaaacatcc	CRISPR spacer
tggaacatg----gaatactccagagcaaaacatcc	Protospacer
    ** .*    ********** * **********

70. spacer 2.9|503161|28|CP033896|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049837 (Gordonia terrae strain RL-JC02 plasmid pPAE01, complete sequence) position: , mismatch: 8, identity: 0.714

tttgaggtgtcggtggtgccgatcggtg	CRISPR spacer
ggggaggtggcggtggtgccgatcatct	Protospacer
   ****** **************. .

71. spacer 1.29|174095|32|CP033896|CRISPRCasFinder,CRT matches to NZ_KM017071 (Sphingomonas sp. JE1 plasmid pJE1, complete sequence) position: , mismatch: 9, identity: 0.719

agcagggaatcagctttccgccgcccccgttt	CRISPR spacer
gcgtgcgggtcagcgttccgccgccgccgttt	Protospacer
.   * *..***** ********** ******

72. spacer 1.38|174645|32|CP033896|CRISPRCasFinder,CRT matches to NZ_CP017591 (Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ10, complete sequence) position: , mismatch: 9, identity: 0.719

tacccgcttgtcgcgccgctcaagctcacggc----	CRISPR spacer
acccggcttgtcgcgctgctcaag----cagcaaaa	Protospacer
  ** ***********.*******    *.**

73. spacer 1.38|174645|32|CP033896|CRISPRCasFinder,CRT matches to NZ_CP049116 (Pantoea stewartii strain ZJ-FGZX1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tacccgcttgtcgcgccgctcaagctcacggc----	CRISPR spacer
acccggcttgtcgcgctgctcaag----cagcaaaa	Protospacer
  ** ***********.*******    *.**

74. spacer 1.49|175316|32|CP033896|CRISPRCasFinder,CRT matches to NC_014825 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL02, complete sequence) position: , mismatch: 9, identity: 0.719

tctgaagtcacctgccgctggatactcaacgt	CRISPR spacer
gttacggtgacctgccgctggatattcaaggc	Protospacer
 .*. .** ***************.**** *.

75. spacer 1.38|174645|32|CP033896|CRISPRCasFinder,CRT matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tacccgcttgtcgcgccgctcaagctcacggc	CRISPR spacer
cacccgcttatcgcgccggtcaaggcagaacc	Protospacer
.********.******** ***** . . . *

76. spacer 1.39|174706|32|CP033896|CRISPRCasFinder,CRT matches to NZ_CP050953 (Rhodococcus sp. DMU1 plasmid unnamed) position: , mismatch: 10, identity: 0.688

ggcgcgtccgagatcatctcgtccgacacttt	CRISPR spacer
tgcgcgtcggagatcatgtcgtcctcgatggc	Protospacer
 ******* ******** ******   *.  .

77. spacer 1.39|174706|32|CP033896|CRISPRCasFinder,CRT matches to NZ_CP016621 (Microvirga ossetica strain V5/3m plasmid unnamed5, complete sequence) position: , mismatch: 10, identity: 0.688

ggcgcgtccgagatcatctcgtccgacacttt	CRISPR spacer
cggtcgtccgagatcatcgcggccgactacac	Protospacer
 *  ************** ** *****  . .

78. spacer 1.44|175011|32|CP033896|CRISPRCasFinder,CRT matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 10, identity: 0.688

gaaccacccgccatatccatcgaagaactgga	CRISPR spacer
cgctttttcgacatatccatcgaagaacggga	Protospacer
 . .. ..** ***************** ***

79. spacer 1.48|175255|32|CP033896|CRISPRCasFinder,CRT matches to NC_011879 (Pseudarthrobacter chlorophenolicus A6 plasmid pACHL01, complete sequence) position: , mismatch: 10, identity: 0.688

acttctggcacctggtccaggccgaccaaacc	CRISPR spacer
gggtctgggacgtggtccaggccgacgacgtg	Protospacer
.  ***** ** ************** * ..

80. spacer 1.48|175255|32|CP033896|CRISPRCasFinder,CRT matches to MF140414 (Mycobacterium phage Krypton555, complete genome) position: , mismatch: 10, identity: 0.688

acttctggcacctggtccaggccgaccaaacc	CRISPR spacer
acttccggcacctggcccaggccatcgcggag	Protospacer
*****.*********.*******. *  ..

81. spacer 1.48|175255|32|CP033896|CRISPRCasFinder,CRT matches to MF766044 (Streptomyces phage Amethyst, complete genome) position: , mismatch: 10, identity: 0.688

acttctggcacctggtccaggccgaccaaacc	CRISPR spacer
cgttctggcccgtggtccaggccgaggtcggc	Protospacer
  ******* * *************    . *

82. spacer 1.48|175255|32|CP033896|CRISPRCasFinder,CRT matches to NC_022052 (Mycobacterium phage Whirlwind, complete genome) position: , mismatch: 10, identity: 0.688

acttctggcacctggtccaggccgaccaaacc	CRISPR spacer
acttccggcacctggcccaggccatcgcggag	Protospacer
*****.*********.*******. *  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2678252 : 2688212

uncultured_Mediterranean_phage(40.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZA14541.1\|2678252_2679497_-	DNA polymerase III subunit tau	S5WKH4	Pseudomonas_phage	1.3e-10	32.3
AZA14542.1\|2679559_2681101_+	Adenylate cyclase 2	A0A1B1IWY2	uncultured_Mediterranean_phage	2.8e-20	33.3
AZA14543.1\|2681392_2684374_-	DNA topoisomerase 1	A0A1V0SCS0	Indivirus	2.3e-98	35.5
AZA14544.1\|2685015_2685222_-	putative cold shock protein A	Q9AZD3	Lactococcus_phage	3.4e-14	52.3
AZA14545.1\|2685503_2688212_+	putative ATP-dependent helicase Lhr	A0A1B1IUF6	uncultured_Mediterranean_phage	2.9e-07	32.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP033896

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection