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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP031017 Lactobacillus helveticus isolate NWC_2_3 plasmid pNWC_2_3, complete sequence 0 crisprs NA 0 0 0 0
CP031016 Lactobacillus helveticus isolate NWC_2_3 chromosome, complete genome 2 crisprs cas14j,cas3,Cas14u_CAS-V,csa3,cas2,cas14k,DEDDh,DinG,RT 0 0 20 0

Results visualization

1. CP031016
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031016_1 584360-584651 TypeV NA
4 spacers
cas14k

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP031016_2 1655613-1655791 TypeV NA
2 spacers
cas14j,cas14k

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3473 : 79832 53 Lactobacillus_virus(26.67%) holin,tRNA,transposase,protease NA
DBSCAN-SWA_2 91058 : 143542 43 unidentified_phage(15.38%) holin,bacteriocin,protease,transposase NA
DBSCAN-SWA_3 171085 : 227460 46 Bacillus_phage(28.57%) integrase,tRNA,transposase,protease attL 170955:171014|attR 211754:213078
DBSCAN-SWA_4 232420 : 297742 55 Lactobacillus_virus(17.65%) tRNA,transposase,protease NA
DBSCAN-SWA_5 328630 : 418783 88 Lactobacillus_virus(10.71%) holin,integrase,tRNA,transposase attL 330361:330378|attR 341793:341810
DBSCAN-SWA_6 424247 : 511432 59 uncultured_virus(10.71%) integrase,tRNA,transposase attL 418770:418795|attR 456015:456040
DBSCAN-SWA_7 518479 : 576249 55 unidentified_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_8 583036 : 637054 55 Bacillus_phage(36.36%) tRNA,transposase,protease NA
DBSCAN-SWA_9 640350 : 798087 117 Leptospira_phage(12.12%) transposase NA
DBSCAN-SWA_10 812772 : 881499 53 Prochlorococcus_phage(12.5%) tRNA,transposase,protease NA
DBSCAN-SWA_11 923531 : 945018 32 Lactobacillus_phage(75.0%) integrase,transposase attL 925974:926001|attR 942144:942171
DBSCAN-SWA_12 982273 : 1034338 42 Bacillus_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_13 1039578 : 1342317 232 Leptospira_phage(11.29%) integrase,tRNA,transposase,protease attL 1033316:1033330|attR 1143046:1144514
DBSCAN-SWA_14 1345687 : 1410277 55 Bacillus_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_15 1427968 : 1626155 155 Streptococcus_phage(25.64%) tRNA,bacteriocin,transposase,protease NA
DBSCAN-SWA_16 1649323 : 1783737 107 Bacillus_virus(13.89%) holin,tRNA,transposase NA
DBSCAN-SWA_17 1800746 : 1871536 50 Bacillus_phage(15.38%) protease,transposase NA
DBSCAN-SWA_18 1876439 : 1939844 53 Leptospira_phage(18.75%) bacteriocin,transposase NA
DBSCAN-SWA_19 1946397 : 2006336 54 Bacillus_phage(25.0%) bacteriocin,transposase NA
DBSCAN-SWA_20 2054995 : 2165231 85 Bacillus_phage(16.0%) tRNA,bacteriocin,transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage