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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP033910 Mycobacterium avium subsp. paratuberculosis strain MAPK_CN4/13 chromosome, complete genome 5 crisprs cas3,DEDDh,DinG,csa3,cas4,WYL 1 4 2 0

Results visualization

1. CP033910
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP033910_1 186872-186952 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP033910_2 2403223-2403313 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP033910_3 2929491-2929571 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP033910_4 3082911-3082991 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP033910_5 3112101-3112191 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 CP033910.1 2348097-2348125 0 1.0

1. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to position: 2348097-2348125, mismatch: 0, identity: 1.0

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
cggctgcgccgcgcttgcgatcgccgcgc	Protospacer
*****************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_AP022607 Mycobacterium branderi strain JCM 12687 plasmid pJCM12687 492097-492125 3 0.897
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_AP022607 Mycobacterium branderi strain JCM 12687 plasmid pJCM12687 509638-509666 3 0.897
CP033910_7 7.1|4268802|25|CP033910|CRISPRCasFinder 4268802-4268826 25 NZ_AP022607 Mycobacterium branderi strain JCM 12687 plasmid pJCM12687 141033-141057 3 0.88
CP033910_2 2.1|2403256|25|CP033910|CRISPRCasFinder 2403256-2403280 25 CP036360 Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence 131283-131307 4 0.84
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NC_016587 Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence 251834-251862 4 0.862
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NC_007974 Cupriavidus metallidurans CH34 megaplasmid, complete sequence 1780240-1780268 4 0.862
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_CP046333 Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3 1847066-1847094 4 0.862
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NC_017958 Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence 1027719-1027747 4 0.862
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_AP022571 Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence 23039-23067 4 0.862
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NC_014811 Mycolicibacterium gilvum Spyr1 plasmid pMSPYR101, complete sequence 179192-179220 4 0.862
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NC_008703 Mycobacterium sp. KMS plasmid pMKMS01, complete sequence 44679-44707 4 0.862
CP033910_7 7.1|4268802|25|CP033910|CRISPRCasFinder 4268802-4268826 25 NZ_CP023738 Methylosinus trichosporium OB3b plasmid pOB3b1, complete sequence 106673-106697 4 0.84
CP033910_7 7.1|4268802|25|CP033910|CRISPRCasFinder 4268802-4268826 25 NZ_CP039340 Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence 938214-938238 4 0.84
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_CP022747 Sphingobium hydrophobicum strain C1 plasmid p1, complete sequence 83563-83591 5 0.828
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_CP022749 Sphingobium hydrophobicum strain C1 plasmid p3, complete sequence 166742-166770 5 0.828
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 CP006880 Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence 523304-523332 5 0.828
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 MH744420 Streptomyces phage Kromp, complete genome 13856-13884 5 0.828
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_CP016462 Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence 145172-145200 6 0.793
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_CP012708 Psychrobacter urativorans strain R310.10B plasmid 2, complete sequence 936-964 6 0.793
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_LR134468 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence 99913-99941 6 0.793
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_CP024308 Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence 331027-331055 6 0.793
CP033910_6 6.1|3287366|30|CP033910|CRISPRCasFinder 3287366-3287395 30 NZ_CP015530 Rhodococcus sp. WB1 plasmid pWB1, complete sequence 79911-79940 6 0.8
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_CP029452 Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence 92492-92520 7 0.759
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_CP023071 Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence 2090622-2090650 7 0.759
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_CP017076 Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence 16376-16404 7 0.759
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NC_012586 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence 597057-597085 7 0.759
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NC_007766 Rhizobium etli CFN 42 plasmid p42f, complete sequence 542873-542901 7 0.759
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_CP020911 Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence 708548-708576 7 0.759
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NC_021911 Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence 418198-418226 7 0.759
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_CP013054 Sinorhizobium americanum CCGM7 plasmid C, complete sequence 566904-566932 7 0.759
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NC_016626 Burkholderia sp. YI23 plasmid byi_1p, complete sequence 34546-34574 7 0.759
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_CP014169 Sphingomonas panacis strain DCY99 plasmid unnamed, complete sequence 11428-11456 7 0.759
CP033910_6 6.1|3287366|30|CP033910|CRISPRCasFinder 3287366-3287395 30 NZ_CP030074 Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence 125440-125469 7 0.767
CP033910_6 6.1|3287366|30|CP033910|CRISPRCasFinder 3287366-3287395 30 NZ_CP054621 Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence 576541-576570 7 0.767
CP033910_6 6.1|3287366|30|CP033910|CRISPRCasFinder 3287366-3287395 30 NC_013193 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence 107046-107075 7 0.767
CP033910_6 6.1|3287366|30|CP033910|CRISPRCasFinder 3287366-3287395 30 NZ_CP032347 Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence 517672-517701 7 0.767
CP033910_6 6.1|3287366|30|CP033910|CRISPRCasFinder 3287366-3287395 30 MT657333 Microbacterium phage Casend, complete genome 60372-60401 7 0.767
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_CP006991 Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence 589152-589180 8 0.724
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_CP007129 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence 719122-719150 8 0.724
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_CP020951 Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence 339852-339880 8 0.724
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_CP021128 Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence 539184-539212 8 0.724
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 CP007645 Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence 597600-597628 8 0.724
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_CP006257 Pseudomonas syringae pv. syringae HS191 plasmid unnamed, complete sequence 7119-7147 8 0.724
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 MH632120 Mycobacterium phage Thonko, complete genome 52304-52332 8 0.724
CP033910_6 6.1|3287366|30|CP033910|CRISPRCasFinder 3287366-3287395 30 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 4993432-4993461 8 0.733
CP033910_6 6.1|3287366|30|CP033910|CRISPRCasFinder 3287366-3287395 30 NZ_CP032347 Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence 34530-34559 8 0.733
CP033910_6 6.1|3287366|30|CP033910|CRISPRCasFinder 3287366-3287395 30 NZ_CP022363 Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence 132707-132736 9 0.7
CP033910_6 6.1|3287366|30|CP033910|CRISPRCasFinder 3287366-3287395 30 NZ_CP006989 Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence 326083-326112 9 0.7
CP033910_6 6.1|3287366|30|CP033910|CRISPRCasFinder 3287366-3287395 30 NC_007974 Cupriavidus metallidurans CH34 megaplasmid, complete sequence 1583679-1583708 9 0.7
CP033910_6 6.1|3287366|30|CP033910|CRISPRCasFinder 3287366-3287395 30 NZ_CP046333 Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3 369234-369263 9 0.7
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_CP054022 Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence 187322-187350 10 0.655
CP033910_4 4.1|3082937|29|CP033910|CRISPRCasFinder 3082937-3082965 29 NZ_CP054032 Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence 1138221-1138249 10 0.655

1. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 3, identity: 0.897

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
cggctgcgccgcgcttgcgatcgcctcta	Protospacer
************************* *  

2. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 3, identity: 0.897

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
cggctgcgccgcgcttgcgatcgcctcta	Protospacer
************************* *  

3. spacer 7.1|4268802|25|CP033910|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 3, identity: 0.88

ggccgtgctggccaattcgcggccg	CRISPR spacer
cgccgagctggccaattcgcggcag	Protospacer
 **** ***************** *

4. spacer 2.1|2403256|25|CP033910|CRISPRCasFinder matches to CP036360 (Agrobacterium sp. 33MFTa1.1 plasmid p_JBx_073812, complete sequence) position: , mismatch: 4, identity: 0.84

gggtgggatggcccgcctcctcctc	CRISPR spacer
ctatgggatggcccgcctcctcttc	Protospacer
  .*******************.**

5. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 4, identity: 0.862

--cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
gtcgg--gcgcggcgctggcgatcgccgcgc	Protospacer
  ***  **** ***** *************

6. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 4, identity: 0.862

cggctg-cgccgcgcttgcgatcgccgcgc	CRISPR spacer
-ggccgttgccgcgctggcgatcgccgcgc	Protospacer
 ***.* .******** *************

7. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 4, identity: 0.862

cggctg-cgccgcgcttgcgatcgccgcgc	CRISPR spacer
-ggccgttgccgcgctggcgatcgccgcgc	Protospacer
 ***.* .******** *************

8. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 4, identity: 0.862

cggctgcgccgcgcttgcgatc-gccgcgc	CRISPR spacer
gggctgcgccccgcttgcgatcggccgag-	Protospacer
 ********* *********** **** * 

9. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 4, identity: 0.862

cggctg--cgccgcgcttgcgatcgccgcgc	CRISPR spacer
--gctggccgccgcgcgtgcgatggccgcgc	Protospacer
  ****  ******** ****** *******

10. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NC_014811 (Mycolicibacterium gilvum Spyr1 plasmid pMSPYR101, complete sequence) position: , mismatch: 4, identity: 0.862

cggctg--cgccgcgcttgcgatcgccgcgc	CRISPR spacer
--gctggccgccgcgcgtgcgatggccgcgc	Protospacer
  ****  ******** ****** *******

11. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NC_008703 (Mycobacterium sp. KMS plasmid pMKMS01, complete sequence) position: , mismatch: 4, identity: 0.862

cggctg--cgccgcgcttgcgatcgccgcgc	CRISPR spacer
--gctggccgccgcgcgtgcgatggccgcgc	Protospacer
  ****  ******** ****** *******

12. spacer 7.1|4268802|25|CP033910|CRISPRCasFinder matches to NZ_CP023738 (Methylosinus trichosporium OB3b plasmid pOB3b1, complete sequence) position: , mismatch: 4, identity: 0.84

ggccgtgctggccaattcgcggccg	CRISPR spacer
ggccgtgctggacaattcgcggtgc	Protospacer
*********** **********.  

13. spacer 7.1|4268802|25|CP033910|CRISPRCasFinder matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 4, identity: 0.84

ggccgtgctggccaattcgcggccg	CRISPR spacer
ggccgcgctggccatttcgcggcga	Protospacer
*****.******** ******** .

14. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_CP022747 (Sphingobium hydrophobicum strain C1 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.828

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
gggcggcgccgcgattgcgatcgccggga	Protospacer
 *** ******** ************ * 

15. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_CP022749 (Sphingobium hydrophobicum strain C1 plasmid p3, complete sequence) position: , mismatch: 5, identity: 0.828

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
gggcggcgccgcgattgcgatcgccggga	Protospacer
 *** ******** ************ * 

16. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 5, identity: 0.828

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
cgcctgcgccgggcttgcgatcgcattgc	Protospacer
** ******** ************  .**

17. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to MH744420 (Streptomyces phage Kromp, complete genome) position: , mismatch: 5, identity: 0.828

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
cgccgacgccgcggtggcgatcgccgcgc	Protospacer
** * .******* * *************

18. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_CP016462 (Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence) position: , mismatch: 6, identity: 0.793

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
ctgatgcgccacgcttgcgatcgccgaaa	Protospacer
* * ******.*************** . 

19. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_CP012708 (Psychrobacter urativorans strain R310.10B plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.793

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
aggctgtgccgcgcttgcgctcgccatcc	Protospacer
 *****.************ *****.. *

20. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_LR134468 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence) position: , mismatch: 6, identity: 0.793

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
cctcgacgccgcgctggagatcgccgcgc	Protospacer
*  * .********* * ***********

21. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_CP024308 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence) position: , mismatch: 6, identity: 0.793

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
cttcatcgccgcccttgcgctcgccgcgc	Protospacer
*  *  ****** ****** *********

22. spacer 6.1|3287366|30|CP033910|CRISPRCasFinder matches to NZ_CP015530 (Rhodococcus sp. WB1 plasmid pWB1, complete sequence) position: , mismatch: 6, identity: 0.8

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
gctcccgcggcggcggttcggtgcgcaggg	Protospacer
 * ********* **********.**.* *

23. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
tctcgacgccgcgcgggcgatcgccgcgc	Protospacer
.  * .********  *************

24. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
tctcgacgccgcgcgggcgatcgccgcgc	Protospacer
.  * .********  *************

25. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
gttcgccgccgcgcctgcgctcgccgcgc	Protospacer
   *  ********.**** *********

26. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
tctcgacgccgcgcgggcgatcgccgcgc	Protospacer
.  * .********  *************

27. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NC_007766 (Rhizobium etli CFN 42 plasmid p42f, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
ctatggcgccgcgcaggcgatcgccgcga	Protospacer
* .. *********  ************ 

28. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
ctatggcgccgcgcaggcgatcgccgcga	Protospacer
* .. *********  ************ 

29. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
ctatggcgccgcgcaggcgatcgccgcga	Protospacer
* .. *********  ************ 

30. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
tctcgacgccgcgcgggcgatcgccgcgc	Protospacer
.  * .********  *************

31. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
tctttccgccgcgcttgccatcaccgcgc	Protospacer
.  .* ************ ***.******

32. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_CP014169 (Sphingomonas panacis strain DCY99 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
gaacagcgcgacgcttgcgatcgccgcga	Protospacer
 ..* **** .***************** 

33. spacer 6.1|3287366|30|CP033910|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccggtcgcgtcgccggttcggtgtgcgggc	Protospacer
.*. .**** ******************  

34. spacer 6.1|3287366|30|CP033910|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
cgggcagcggcgccggctcggtgtgcggca	Protospacer
. . * **********.************.

35. spacer 6.1|3287366|30|CP033910|CRISPRCasFinder matches to NC_013193 (Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccggcagcggcgccggttcgctgtgccgct	Protospacer
.*. * ************** ***** ** 

36. spacer 6.1|3287366|30|CP033910|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccgtcaccgccgccggttcggtgagcggcg	Protospacer
.*..*  ** ************* ******

37. spacer 6.1|3287366|30|CP033910|CRISPRCasFinder matches to MT657333 (Microbacterium phage Casend, complete genome) position: , mismatch: 7, identity: 0.767

tcacccgcggcgccggttcggtgtgcggcg----	CRISPR spacer
tctcccgcggcaccggttcggt----gacgccct	Protospacer
** ********.**********    *.**    

38. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 8, identity: 0.724

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
atatggcgccgcgcaggcgatcgccgcga	Protospacer
  .. *********  ************ 

39. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.724

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
gacgctcgccgcgcgggcgatcgccgcgc	Protospacer
 .  . ********  *************

40. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_CP020951 (Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence) position: , mismatch: 8, identity: 0.724

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
ttatggcgccgcgcaggcgatcgccgcga	Protospacer
. .. *********  ************ 

41. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 8, identity: 0.724

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
atatggcgccgcgcaggcgatcgccgcga	Protospacer
  .. *********  ************ 

42. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 8, identity: 0.724

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
atatggcgccgcgcaggcgatcgccgcga	Protospacer
  .. *********  ************ 

43. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_CP006257 (Pseudomonas syringae pv. syringae HS191 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.724

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
tggctgggccgtgcttgcgatcgctcact	Protospacer
.***** ****.************.   .

44. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to MH632120 (Mycobacterium phage Thonko, complete genome) position: , mismatch: 8, identity: 0.724

cggctgcgccgcgcttgcgatcgccgcgc	CRISPR spacer
gtcgcacgccgcgctcgcgatcgccgggc	Protospacer
    ..*********.********** **

45. spacer 6.1|3287366|30|CP033910|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.733

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccggccgcggcgcccgttcggtgagcgagc	Protospacer
.*. ********** ******** ***.  

46. spacer 6.1|3287366|30|CP033910|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.733

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccttccgcgtcgccggttcggtgtgttcgg	Protospacer
.* .***** ***************.   *

47. spacer 6.1|3287366|30|CP033910|CRISPRCasFinder matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 9, identity: 0.7

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
cgggtcaatgcgccggttcggtgtccggcg	Protospacer
. . .*.  *************** *****

48. spacer 6.1|3287366|30|CP033910|CRISPRCasFinder matches to NZ_CP006989 (Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence) position: , mismatch: 9, identity: 0.7

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
ccacccgcggcggcagttcggtgtaataat	Protospacer
.*********** *.*********.  .  

49. spacer 6.1|3287366|30|CP033910|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.7

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
agcagagcggccccggttcggggtgcggcc	Protospacer
      ***** ********* ******* 

50. spacer 6.1|3287366|30|CP033910|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 9, identity: 0.7

tcacccgcggcgccggttcggtgtgcggcg	CRISPR spacer
agcagagcggccccggttcggggtgcggcc	Protospacer
      ***** ********* ******* 

51. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 10, identity: 0.655

cggctgcgccgcgcttgcgatcgccgcgc-----	CRISPR spacer
-----gcgccgcgatcgcaagcgctgcgccggcc	Protospacer
     ******** *.**.* ***.****     

52. spacer 4.1|3082937|29|CP033910|CRISPRCasFinder matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 10, identity: 0.655

cggctgcgccgcgcttgcgatcgccgcgc-----	CRISPR spacer
-----gcgccgcgatcgcaagcgctgcgccggcc	Protospacer
     ******** *.**.* ***.****     

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 885214 : 949941 59 Tupanvirus(17.65%) protease,tRNA,holin,transposase NA
DBSCAN-SWA_2 2753606 : 2760178 8 Bacillus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage