CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033913	Chryseobacterium shandongense strain H5143 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0
CP033912	Chryseobacterium shandongense strain H5143 chromosome, complete genome	0 crisprs	cas3,WYL,DEDDh,csa3,PD-DExK,c2c10_CAS-V-U3	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

669157 : 680239

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZA94567.1\|669157_671836_+	GHKL domain-containing protein	W8CYF6	Bacillus_phage	9.0e-22	30.5
AZA94568.1\|671904_672264_+	response regulator	W8CYM9	Bacillus_phage	2.1e-11	31.0
AZA94569.1\|672327_674226_+	propionyl-CoA synthetase	A0A2H4PQU7	Staphylococcus_phage	6.8e-64	32.5
AZA94570.1\|674276_676184_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	2.9e-83	40.3
AZA94571.1\|676365_676731_+	hypothetical protein	NA	NA	NA	NA
AZA94572.1\|676845_679050_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	9.7e-14	38.4
AZA94573.1\|679057_680239_+	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.3e-70	42.7

DBSCAN-SWA_2

1220687 : 1268539

Pandoravirus(20.0%)

protease,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZA95019.1\|1220687_1221626_+\|transposase	IS1595 family transposase ISCrsp1	NA	NA	NA	NA
AZA95020.1\|1221636_1221930_-	DUF2752 domain-containing protein	NA	NA	NA	NA
AZA95021.1\|1221962_1223015_-	NADPH dehydrogenase NamA	NA	NA	NA	NA
AZA95022.1\|1223118_1223601_+	cytidine deaminase	NA	NA	NA	NA
AZA95023.1\|1224230_1226057_+	TonB-dependent receptor	NA	NA	NA	NA
AZA95024.1\|1226070_1227111_+	hypothetical protein	NA	NA	NA	NA
AZA95025.1\|1227150_1227381_-	hypothetical protein	NA	NA	NA	NA
AZA95026.1\|1227482_1228904_-	HD domain-containing protein	A0A2I2MPB1	Mycobacterium_phage	1.0e-27	27.0
AZA95027.1\|1229058_1229607_-	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	6.4e-07	28.4
AZA95028.1\|1229647_1229956_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
AZA95029.1\|1230027_1230531_-	DinB family protein	NA	NA	NA	NA
AZA95030.1\|1230645_1231092_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AZA95031.1\|1231151_1231631_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
AZA95032.1\|1231984_1233124_-	cystathionine gamma-synthase	A0A0B5JD48	Pandoravirus	2.6e-26	30.3
AZA95033.1\|1233209_1233536_-	gliding motility protein GldC	NA	NA	NA	NA
AZA95034.1\|1233602_1234583_-	gliding motility protein GldB	NA	NA	NA	NA
AZA95035.1\|1234633_1235269_+	leucine-rich repeat domain-containing protein	NA	NA	NA	NA
AZA97879.1\|1235302_1235800_+	N-acetyltransferase	G9BWD5	Planktothrix_phage	1.4e-13	33.5
AZA95036.1\|1235861_1236653_+	NAD(+) synthase	M1IPF8	Pelagibacter_phage	2.0e-62	51.4
AZA95037.1\|1236993_1237497_+	ribonuclease N	NA	NA	NA	NA
AZA97880.1\|1237513_1238146_+\|protease	Zn-dependent protease	NA	NA	NA	NA
AZA95038.1\|1238148_1238457_+	barnase inhibitor	NA	NA	NA	NA
AZA95039.1\|1238705_1239302_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
AZA95040.1\|1239395_1241042_-	alkaline phosphatase family protein	NA	NA	NA	NA
AZA95041.1\|1241225_1241585_+	hypothetical protein	NA	NA	NA	NA
AZA95042.1\|1241635_1242175_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AZA95043.1\|1242258_1243971_+	hypothetical protein	NA	NA	NA	NA
AZA95044.1\|1244063_1244648_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AZA95045.1\|1244781_1245519_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AZA95046.1\|1245701_1246673_+	aldehyde reductase	NA	NA	NA	NA
AZA95047.1\|1246696_1247482_+	AraC family transcriptional regulator	NA	NA	NA	NA
AZA95048.1\|1247561_1249124_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
AZA95049.1\|1249225_1250152_-	malate dehydrogenase	NA	NA	NA	NA
AZA95050.1\|1250340_1250892_-	heme oxygenase	NA	NA	NA	NA
AZA95051.1\|1250920_1253113_-	GAF domain-containing protein	Q8QNA6	Ectocarpus_siliculosus_virus	9.7e-14	21.8
AZA95052.1\|1253491_1254505_-	nucleoid-associated protein	NA	NA	NA	NA
AZA95053.1\|1254867_1255263_+	hypothetical protein	NA	NA	NA	NA
AZA95054.1\|1255371_1256247_-	universal stress protein	NA	NA	NA	NA
AZA95055.1\|1256454_1258959_-	cation-translocating P-type ATPase	A7IUR5	Paramecium_bursaria_Chlorella_virus	1.9e-58	24.1
AZA95056.1\|1259260_1264696_-	T9SS C-terminal target domain-containing protein	NA	NA	NA	NA
AZA95057.1\|1264714_1265653_-	hypothetical protein	NA	NA	NA	NA
AZA95058.1\|1265649_1266768_-	hypothetical protein	NA	NA	NA	NA
AZA95059.1\|1266833_1267376_-\|tail	phage tail protein	A0A0U4JYA4	Arthrobacter_phage	7.2e-11	32.3
AZA95060.1\|1267410_1267953_-\|tail	phage tail protein	A0A1D8KTQ9	Synechococcus_phage	1.8e-06	32.5
AZA95061.1\|1267999_1268539_-\|tail	phage tail protein	A0A0U4JXW2	Arthrobacter_phage	4.0e-14	34.9

DBSCAN-SWA_3

3886086 : 3933397

uncultured_phage(40.0%)

holin,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZA97266.1\|3886086_3886431_+\|holin	phage holin family protein	NA	NA	NA	NA
AZA97267.1\|3886624_3888619_+	S9 family peptidase	NA	NA	NA	NA
AZA97268.1\|3888702_3889191_+	DNA-deoxyinosine glycosylase	NA	NA	NA	NA
AZA97269.1\|3889163_3889919_+	hypothetical protein	NA	NA	NA	NA
AZA97270.1\|3890838_3891888_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AZA97271.1\|3892003_3893038_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA
AZA97272.1\|3893112_3894051_+	sterol desaturase family protein	NA	NA	NA	NA
AZA97273.1\|3894479_3895358_+	hypothetical protein	NA	NA	NA	NA
AZA97274.1\|3895545_3896523_+	polyprenyl synthetase family protein	NA	NA	NA	NA
AZA97275.1\|3896524_3896818_-	hypothetical protein	NA	NA	NA	NA
AZA97276.1\|3896955_3899388_+	transketolase	NA	NA	NA	NA
AZA97277.1\|3899400_3900330_+	Mrr restriction system protein	NA	NA	NA	NA
AZA97278.1\|3900345_3900735_-	transcriptional regulator	NA	NA	NA	NA
AZA97279.1\|3901244_3902306_+	NADH:flavin oxidoreductase	NA	NA	NA	NA
AZA97280.1\|3902584_3903787_-	aminopeptidase	NA	NA	NA	NA
AZA97281.1\|3903854_3904052_+	hypothetical protein	NA	NA	NA	NA
AZA97282.1\|3904351_3904867_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
AZA97283.1\|3904878_3905985_+	hypothetical protein	NA	NA	NA	NA
AZA97284.1\|3906146_3908063_+	VWA domain-containing protein	A0A0G2Y422	Acanthamoeba_polyphaga_mimivirus	1.4e-08	29.2
AZA97285.1\|3908178_3908682_+	transcriptional regulator	NA	NA	NA	NA
AZA97286.1\|3908685_3909378_+	hypothetical protein	NA	NA	NA	NA
AZA97287.1\|3909446_3909791_+	hypothetical protein	NA	NA	NA	NA
AZA97288.1\|3909798_3910203_+	hypothetical protein	NA	NA	NA	NA
AZA97289.1\|3910281_3910689_+	hypothetical protein	NA	NA	NA	NA
AZA97290.1\|3910681_3911167_+	cell division protein	NA	NA	NA	NA
AZA97291.1\|3911370_3912279_+	TIGR01777 family protein	NA	NA	NA	NA
AZA97292.1\|3912385_3913699_+	sorbosone dehydrogenase family protein	NA	NA	NA	NA
AZA97293.1\|3913795_3914068_+	hypothetical protein	NA	NA	NA	NA
AZA97294.1\|3914243_3915632_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA
AZA97295.1\|3915786_3916401_+	hypothetical protein	NA	NA	NA	NA
AZA97296.1\|3916581_3917379_+	patatin	A0A1V0SKV5	Klosneuvirus	9.6e-12	28.4
AZA97297.1\|3917404_3917842_-	hypothetical protein	NA	NA	NA	NA
AZA97298.1\|3917890_3918613_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	9.2e-38	37.8
AZA97299.1\|3918694_3919249_-	hypothetical protein	NA	NA	NA	NA
AZA97999.1\|3919883_3921347_+	OmpA family protein	NA	NA	NA	NA
AZA97300.1\|3921507_3922401_+	SDR family oxidoreductase	NA	NA	NA	NA
AZA97301.1\|3922410_3923331_+	AraC family transcriptional regulator	NA	NA	NA	NA
AZA97302.1\|3923797_3924250_-	hypothetical protein	NA	NA	NA	NA
AZA97303.1\|3924479_3925952_-	hypothetical protein	NA	NA	NA	NA
AZA97304.1\|3925994_3926315_-	hypothetical protein	NA	NA	NA	NA
AZA97305.1\|3926862_3927450_+	DUF4255 domain-containing protein	NA	NA	NA	NA
AZA97306.1\|3927576_3929298_+\|tail	phage tail sheath family protein	NA	NA	NA	NA
AZA97307.1\|3929382_3931101_+\|tail	phage tail sheath family protein	NA	NA	NA	NA
AZA97308.1\|3931139_3931571_+\|tail	phage tail protein	A0A059XEM3	uncultured_phage	1.8e-25	46.7
AZA97309.1\|3931595_3932927_+\|tail	phage tail sheath family protein	NA	NA	NA	NA
AZA97310.1\|3932965_3933397_+\|tail	phage tail protein	A0A059XEM3	uncultured_phage	1.8e-25	46.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage