CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033921	Chryseobacterium carnipullorum strain F9942 chromosome, complete genome	0 crisprs	WYL,c2c10_CAS-V-U3,cas1,cas2,DEDDh,csa3,cas3,PD-DExK	0	0	9	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

196027 : 211584

Leptospira_phage(100.0%)

integrase,transposase

attL 207384:207398|attR 214920:214934

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZA63429.1\|196027_196870_+\|integrase	integrase	S5W9T9	Leptospira_phage	3.5e-28	31.1
AZA63430.1\|196853_197960_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AZA63431.1\|198195_199110_-	hypothetical protein	NA	NA	NA	NA
AZA63432.1\|199265_199889_-	hypothetical protein	NA	NA	NA	NA
AZA63433.1\|200173_201070_-	alpha/beta hydrolase	NA	NA	NA	NA
AZA63434.1\|201281_202100_-	hypothetical protein	NA	NA	NA	NA
AZA63435.1\|202464_203169_-	DUF4386 domain-containing protein	NA	NA	NA	NA
AZA63436.1\|203233_203521_-	hypothetical protein	NA	NA	NA	NA
AZA63437.1\|203782_204625_+\|integrase	integrase	S5W9T9	Leptospira_phage	3.5e-28	31.1
AZA63438.1\|204608_205715_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AZA63439.1\|205949_207239_-	hypothetical protein	NA	NA	NA	NA
207384:207398	attL	NA	NA	NA	NA
AZA63440.1\|209651_210494_+\|integrase	integrase	S5W9T9	Leptospira_phage	7.0e-29	31.6
AZA63441.1\|210477_211584_+\|transposase	IS91 family transposase	NA	NA	NA	NA
214920:214934	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1528655 : 1536734

Riemerella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZA64463.1\|1528655_1529204_+	hypothetical protein	F5A396	Riemerella_phage	1.7e-36	45.3
AZA64464.1\|1529166_1529739_+	hypothetical protein	F5A395	Riemerella_phage	2.3e-15	32.5
AZA64465.1\|1529850_1530135_+	DUF3380 domain-containing protein	D2JTA3	Pseudomonas_phage	8.4e-11	63.6
AZA64466.1\|1530044_1530446_+	N-acetylmuramidase family protein	U5PZP0	Acinetobacter_phage	7.9e-31	56.3
AZA64467.1\|1530472_1530667_-	hypothetical protein	NA	NA	NA	NA
AZA64468.1\|1530921_1531191_+	hypothetical protein	NA	NA	NA	NA
AZA64469.1\|1531285_1532107_+	hypothetical protein	NA	NA	NA	NA
AZA64470.1\|1532124_1534167_+	hypothetical protein	A0A1B0WME7	Flavobacterium_phage	1.3e-97	33.2
AZA64471.1\|1534217_1535030_+	hypothetical protein	NA	NA	NA	NA
AZA64472.1\|1535119_1535419_+	hypothetical protein	NA	NA	NA	NA
AZA64473.1\|1535396_1536734_+	hypothetical protein	A0A1B0WN37	Flavobacterium_phage	2.2e-77	34.5

DBSCAN-SWA_3

1696951 : 1706042

Riemerella_phage(77.78%)

portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZA64612.1\|1696951_1697365_+	DUF2693 domain-containing protein	F5A3D3	Riemerella_phage	6.2e-15	45.1
AZA64613.1\|1697623_1697968_+	hypothetical protein	NA	NA	NA	NA
AZA64614.1\|1698111_1698531_+	NinG protein	F5A3D2	Riemerella_phage	7.2e-27	48.2
AZA64615.1\|1698517_1698862_+	hypothetical protein	NA	NA	NA	NA
AZA64616.1\|1698974_1699688_+	phosphoadenosine phosphosulfate reductase	F5A3D0	Riemerella_phage	2.0e-85	63.8
AZA64617.1\|1699671_1700463_+	DNA methylase	F5A3C9	Riemerella_phage	5.1e-58	52.5
AZA64618.1\|1700642_1701233_+	hypothetical protein	F5A3C8	Riemerella_phage	2.8e-40	61.0
AZA64619.1\|1701198_1702578_+\|terminase	PBSX family phage terminase large subunit	I6R9R5	Nonlabens_phage	2.8e-96	44.0
AZA64620.1\|1702577_1703963_+\|portal	phage portal protein	F5A3C6	Riemerella_phage	2.6e-121	52.2
AZA67699.1\|1703970_1704999_+	site-specific DNA-methyltransferase	D6PSV9	Lactobacillus_phage	1.4e-39	34.8
AZA64621.1\|1704998_1706042_+	hypothetical protein	F5A3C5	Riemerella_phage	2.5e-97	50.9

DBSCAN-SWA_4

1714923 : 1729759

Riemerella_phage(84.62%)

capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZA64639.1\|1714923_1716813_-	SGNH/GDSL hydrolase family protein	V5XV50	Staphylococcus_phage	1.7e-11	26.7
AZA64640.1\|1716817_1717840_-	hypothetical protein	F5A3A0	Riemerella_phage	9.6e-41	34.9
AZA64641.1\|1717836_1718328_-	hypothetical protein	NA	NA	NA	NA
AZA64642.1\|1718327_1722827_-	hypothetical protein	F5A3A4	Riemerella_phage	6.5e-182	34.3
AZA64643.1\|1722826_1723021_-	hypothetical protein	F5A3A9	Riemerella_phage	7.7e-16	64.1
AZA64644.1\|1723038_1723515_-	hypothetical protein	F5A3B0	Riemerella_phage	6.3e-27	42.9
AZA64645.1\|1723583_1724090_-	hypothetical protein	F5A3B1	Riemerella_phage	1.6e-41	49.7
AZA64646.1\|1724104_1724515_-	hypothetical protein	F5A3B2	Riemerella_phage	4.0e-30	50.7
AZA64647.1\|1724511_1724931_-	hypothetical protein	F5A3B3	Riemerella_phage	5.0e-28	51.4
AZA64648.1\|1724921_1725248_-	hypothetical protein	NA	NA	NA	NA
AZA64649.1\|1725241_1725559_-	hypothetical protein	F5A3B5	Riemerella_phage	3.8e-28	53.3
AZA67700.1\|1725558_1726647_-\|capsid	major capsid protein E	F5A3B6	Riemerella_phage	2.1e-118	59.7
AZA67701.1\|1726663_1727035_-	hypothetical protein	F5A3B7	Riemerella_phage	3.2e-34	60.7
AZA64650.1\|1727027_1727687_-	hypothetical protein	F5A3B8	Riemerella_phage	3.2e-21	44.3
AZA64651.1\|1727814_1728120_+	hypothetical protein	NA	NA	NA	NA
AZA64652.1\|1728308_1728776_+	hypothetical protein	NA	NA	NA	NA
AZA64653.1\|1728832_1729759_+	site-specific DNA-methyltransferase	D6PSV9	Lactobacillus_phage	7.1e-43	39.2

DBSCAN-SWA_5

1733879 : 1742589

Cellulophaga_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZA64664.1\|1733879_1734764_-	hypothetical protein	S0A4B2	Cellulophaga_phage	3.0e-22	31.6
AZA64665.1\|1734753_1735557_-	DUF1376 domain-containing protein	NA	NA	NA	NA
AZA64666.1\|1735553_1736081_-	DUF1376 domain-containing protein	A0A143FIY2	Bacillus_phage	1.3e-12	45.2
AZA67702.1\|1736181_1737198_-	DNA cytosine methyltransferase	A0A1B1IVS4	uncultured_Mediterranean_phage	1.1e-39	48.6
AZA64667.1\|1737214_1737535_-	hypothetical protein	NA	NA	NA	NA
AZA64668.1\|1737547_1737904_-	hypothetical protein	A0A249XQX6	Mycobacterium_phage	5.4e-07	26.5
AZA64669.1\|1737917_1738490_-	hypothetical protein	E5DV63	Deep-sea_thermophilic_phage	1.1e-25	39.1
AZA64670.1\|1738496_1738937_-	hypothetical protein	A0A1B0WLP6	Flavobacterium_phage	3.8e-18	47.3
AZA64671.1\|1738918_1739119_-	hypothetical protein	NA	NA	NA	NA
AZA64672.1\|1739131_1739491_-	hypothetical protein	NA	NA	NA	NA
AZA64673.1\|1739483_1739744_-	hypothetical protein	A0A088C4W9	Shewanella_sp._phage	8.7e-07	40.0
AZA64674.1\|1739943_1740657_-	hypothetical protein	F5A3F6	Riemerella_phage	2.7e-21	33.2
AZA64675.1\|1740643_1741240_-	hypothetical protein	A0A2H4PHR9	TM7_phage	6.2e-24	34.4
AZA64676.1\|1741446_1742589_-	hypothetical protein	S0A0M1	Cellulophaga_phage	1.7e-14	37.0

DBSCAN-SWA_6

2594330 : 2671641

uncultured_Mediterranean_phage(37.5%)

integrase,transposase

attL 2604054:2604072|attR 2659379:2659397

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZA65400.1\|2594330_2594744_+\|transposase	transposase	NA	NA	NA	NA
AZA65401.1\|2594719_2595061_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AZA65402.1\|2595741_2597469_+	hypothetical protein	NA	NA	NA	NA
AZA65403.1\|2597650_2598793_+	hypothetical protein	NA	NA	NA	NA
AZA65404.1\|2598908_2600363_+	magnesium chelatase	NA	NA	NA	NA
AZA65405.1\|2601265_2602060_-	hypothetical protein	NA	NA	NA	NA
AZA65406.1\|2602513_2603626_-	hypothetical protein	NA	NA	NA	NA
2604054:2604072	attL	NA	NA	NA	NA
AZA65407.1\|2604397_2609245_-	DUF3883 domain-containing protein	NA	NA	NA	NA
AZA65408.1\|2609752_2610625_+	hypothetical protein	NA	NA	NA	NA
AZA67750.1\|2611141_2611402_-	DNA-binding protein	NA	NA	NA	NA
AZA65409.1\|2612212_2612653_-	AraC family transcriptional regulator	NA	NA	NA	NA
AZA65410.1\|2612706_2613912_-	hypothetical protein	NA	NA	NA	NA
AZA65411.1\|2614184_2614613_+	hypothetical protein	NA	NA	NA	NA
AZA65412.1\|2614893_2615208_+	hypothetical protein	NA	NA	NA	NA
AZA65413.1\|2615269_2616619_-	RagB/SusD family nutrient uptake outer membrane protein	NA	NA	NA	NA
AZA65414.1\|2616630_2619810_-	SusC/RagA family TonB-linked outer membrane protein	NA	NA	NA	NA
AZA65415.1\|2619868_2621170_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
AZA65416.1\|2621793_2622081_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AZA65417.1\|2622364_2623132_+	hypothetical protein	NA	NA	NA	NA
AZA65418.1\|2623372_2624479_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AZA65419.1\|2624462_2625305_-\|integrase	integrase	S5W9T9	Leptospira_phage	7.0e-29	31.6
AZA65420.1\|2625709_2626459_+	hypothetical protein	NA	NA	NA	NA
AZA65421.1\|2626760_2626883_+	DUF3606 domain-containing protein	NA	NA	NA	NA
AZA67751.1\|2627092_2629114_+	OLD family endonuclease	NA	NA	NA	NA
AZA65422.1\|2629405_2629714_+	hypothetical protein	NA	NA	NA	NA
AZA65423.1\|2629710_2630133_+	hypothetical protein	NA	NA	NA	NA
AZA65424.1\|2630208_2630574_+	hypothetical protein	NA	NA	NA	NA
AZA65425.1\|2630575_2631025_+	hypothetical protein	NA	NA	NA	NA
AZA65426.1\|2631540_2636769_+	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	2.2e-56	22.1
AZA65427.1\|2636807_2639645_+	DEAD/DEAH box helicase	A0A1B1IUI1	uncultured_Mediterranean_phage	5.2e-36	26.8
AZA65428.1\|2640669_2642616_+	hypothetical protein	A0A1B1IUC6	uncultured_Mediterranean_phage	2.7e-23	28.3
AZA65429.1\|2642768_2643314_+	hypothetical protein	NA	NA	NA	NA
AZA65430.1\|2643398_2644421_-	hypothetical protein	NA	NA	NA	NA
AZA65431.1\|2645816_2647025_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	2.8e-39	35.7
AZA65432.1\|2647430_2648672_+\|integrase	integrase	H7BUI8	unidentified_phage	3.1e-09	25.5
AZA65433.1\|2648687_2649422_+	hypothetical protein	NA	NA	NA	NA
AZA65434.1\|2649500_2649779_+	DNA-binding protein	NA	NA	NA	NA
AZA65435.1\|2649855_2651094_+	hypothetical protein	NA	NA	NA	NA
AZA65436.1\|2651360_2652239_+	DNA primase	NA	NA	NA	NA
AZA65437.1\|2652408_2652879_+	special sigma factor	NA	NA	NA	NA
AZA65438.1\|2652875_2653730_+	relaxase	NA	NA	NA	NA
AZA65439.1\|2653735_2654299_+	hypothetical protein	NA	NA	NA	NA
AZA65440.1\|2654516_2654720_+	hypothetical protein	NA	NA	NA	NA
AZA65441.1\|2654802_2655066_+	hypothetical protein	NA	NA	NA	NA
AZA65442.1\|2655062_2656211_+	hypothetical protein	NA	NA	NA	NA
AZA65443.1\|2658059_2659235_+	hypothetical protein	NA	NA	NA	NA
AZA65444.1\|2659962_2660529_-	hypothetical protein	NA	NA	NA	NA
2659379:2659397	attR	NA	NA	NA	NA
AZA65445.1\|2660582_2661218_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	3.9e-16	30.2
AZA65446.1\|2662232_2662811_-	hypothetical protein	NA	NA	NA	NA
AZA65447.1\|2662932_2665719_-	T9SS C-terminal target domain-containing protein	NA	NA	NA	NA
AZA65448.1\|2666099_2668910_+	TonB-dependent receptor	NA	NA	NA	NA
AZA67752.1\|2668914_2669946_+	phytase	NA	NA	NA	NA
AZA65449.1\|2670438_2671641_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	9.9e-45	45.5

DBSCAN-SWA_7

2776500 : 2820675

Leptospira_phage(25.0%)

integrase,transposase

attL 2791607:2791623|attR 2820927:2820943

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZA65523.1\|2776500_2777607_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AZA65524.1\|2777590_2778433_-\|integrase	integrase	S5W9T9	Leptospira_phage	7.0e-29	31.6
AZA65525.1\|2778695_2779073_+	hypothetical protein	NA	NA	NA	NA
AZA65526.1\|2779359_2780532_+	hypothetical protein	NA	NA	NA	NA
AZA65527.1\|2780653_2781025_-\|transposase	transposase	NA	NA	NA	NA
AZA65528.1\|2781057_2781405_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AZA67763.1\|2781380_2781812_-\|transposase	transposase	NA	NA	NA	NA
AZA65529.1\|2781951_2783217_-	hypothetical protein	NA	NA	NA	NA
AZA65530.1\|2783241_2783943_-	hypothetical protein	NA	NA	NA	NA
AZA65531.1\|2783983_2784421_-	hypothetical protein	NA	NA	NA	NA
AZA65532.1\|2784443_2784965_-	hypothetical protein	NA	NA	NA	NA
AZA65533.1\|2785762_2787235_-	hypothetical protein	NA	NA	NA	NA
AZA65534.1\|2787428_2788178_-	phosphatase PAP2 family protein	NA	NA	NA	NA
AZA65535.1\|2788181_2789114_-	phosphatase PAP2 family protein	NA	NA	NA	NA
2791607:2791623	attL	NA	NA	NA	NA
AZA65536.1\|2792315_2792576_-	DNA-binding protein	NA	NA	NA	NA
AZA65537.1\|2792939_2793803_-	DUF4238 domain-containing protein	NA	NA	NA	NA
AZA65538.1\|2793871_2795479_-	hypothetical protein	NA	NA	NA	NA
AZA65539.1\|2795412_2797137_-	hypothetical protein	NA	NA	NA	NA
AZA65540.1\|2797278_2801865_-	ATP-binding protein	NA	NA	NA	NA
AZA65541.1\|2802247_2802658_+	single-stranded DNA-binding protein	D7RWG9	Brochothrix_phage	3.3e-08	36.9
AZA65542.1\|2802699_2803773_+	DUF945 domain-containing protein	A0A249XNN6	Brevibacterium_phage	1.3e-32	31.5
AZA65543.1\|2803834_2804278_+	DNA repair protein	NA	NA	NA	NA
AZA65544.1\|2804463_2805456_-	modification methylase	A0A2L0UZL7	Agrobacterium_phage	4.0e-52	37.2
AZA67764.1\|2805587_2806028_-	DUF3872 domain-containing protein	NA	NA	NA	NA
AZA65545.1\|2806039_2806600_-	conjugal transfer protein TraO	NA	NA	NA	NA
AZA67765.1\|2806601_2807600_-	conjugative transposon protein TraN	NA	NA	NA	NA
AZA65546.1\|2807637_2809188_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	6.9e-75	33.5
AZA65547.1\|2809200_2809938_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.6e-21	27.0
AZA65548.1\|2810010_2810511_-	hypothetical protein	S5VKI3	Leptospira_phage	6.2e-25	43.2
AZA65549.1\|2810482_2810815_-	hypothetical protein	NA	NA	NA	NA
AZA65550.1\|2811080_2816954_-	ATP-binding protein	NA	NA	NA	NA
AZA67766.1\|2817054_2817783_-	hypothetical protein	NA	NA	NA	NA
AZA65551.1\|2817757_2818951_-	DUF262 domain-containing protein	NA	NA	NA	NA
AZA65552.1\|2819448_2820675_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	1.6e-37	39.3
2820927:2820943	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2858021 : 2869319

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZA65590.1\|2858021_2860721_+	GHKL domain-containing protein	W8CYF6	Bacillus_phage	4.5e-21	29.9
AZA65591.1\|2860727_2861090_+	response regulator	W8CYM9	Bacillus_phage	1.8e-10	31.0
AZA65592.1\|2861292_2863179_+	propionyl-CoA synthetase	A0A2H4PQU7	Staphylococcus_phage	1.1e-61	32.5
AZA65593.1\|2863239_2865147_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	3.5e-84	40.0
AZA65594.1\|2865451_2865817_+	hypothetical protein	NA	NA	NA	NA
AZA65595.1\|2865927_2868138_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	9.8e-14	38.4
AZA65596.1\|2868140_2869319_+	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.8e-70	43.9

DBSCAN-SWA_9

4898468 : 4906466

Vibrio_virus(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZA67208.1\|4898468_4898942_+	Appr-1-p processing protein	A0A2H5BHA8	Vibrio_virus	2.7e-06	30.1
AZA67209.1\|4898959_4899772_+	TIGR02452 family protein	G3MBH6	Bacillus_virus	9.0e-50	41.6
AZA67210.1\|4900402_4901314_+	crystallin J1	A0A172WZB4	Catopsilia_pomona_nucleopolyhedrovirus	8.4e-12	38.7
AZA67211.1\|4901303_4901810_+	O-acetyl-ADP-ribose deacetylase	A0A0K1L687	Scale_drop_disease_virus	3.8e-30	51.7
AZA67212.1\|4901814_4902501_+	NAD-dependent deacylase	R9TG77	Vibrio_phage	1.6e-31	40.9
AZA67213.1\|4902500_4903442_+	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	1.2e-40	33.1
AZA67214.1\|4903455_4903962_+	RNA 2'-phosphotransferase	A0A2R2ZGT8	Clostridioides_phage	1.9e-42	54.4
AZA67881.1\|4905719_4906466_+	serine/threonine protein phosphatase	S0A0Y6	Cellulophaga_phage	5.2e-44	38.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP033921

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection