CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033924	Chryseobacterium lactis strain KC_1864 chromosome, complete genome	0 crisprs	DEDDh,RT,WYL,cas3,PD-DExK,csa3,cas2,cas1,cas9	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1014583 : 1075869

Leuconostoc_phage(20.0%)

protease,transposase,integrase

attL 1016209:1016229|attR 1065278:1065298

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZA81188.1\|1014583_1016074_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
1016209:1016229	attL	NA	NA	NA	NA
AZA81189.1\|1016352_1017288_+	hypothetical protein	NA	NA	NA	NA
AZA81190.1\|1017485_1017863_+	DNA-binding protein	NA	NA	NA	NA
AZA81191.1\|1017850_1019038_+	virulence-associated E family protein	A0A059PAJ6	Leuconostoc_phage	1.7e-17	29.2
AZA81192.1\|1019311_1020229_+	DNA primase	NA	NA	NA	NA
AZA81193.1\|1021849_1022434_+	hypothetical protein	NA	NA	NA	NA
AZA81194.1\|1022928_1023345_+	hypothetical protein	NA	NA	NA	NA
AZA81195.1\|1023569_1023953_+	hypothetical protein	NA	NA	NA	NA
AZA81196.1\|1023979_1024603_+	DUF3347 domain-containing protein	NA	NA	NA	NA
AZA81197.1\|1024617_1025901_+	efflux RND transporter permease subunit	NA	NA	NA	NA
AZA81198.1\|1025903_1027862_+	efflux RND transporter permease subunit	NA	NA	NA	NA
AZA81199.1\|1027880_1029128_+	TolC family protein	NA	NA	NA	NA
AZA85062.1\|1029241_1030375_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AZA81200.1\|1030386_1031592_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AZA81201.1\|1031593_1032055_+	hypothetical protein	NA	NA	NA	NA
AZA81202.1\|1032175_1032745_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AZA81203.1\|1033078_1033330_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
AZA81204.1\|1033560_1033902_+	four-helix bundle copper-binding protein	NA	NA	NA	NA
AZA81205.1\|1033978_1035070_+	hypothetical protein	NA	NA	NA	NA
AZA81206.1\|1035149_1036181_+	type II glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
AZA81207.1\|1036386_1037325_+\|transposase	IS1595 family transposase ISCrsp1	NA	NA	NA	NA
AZA81208.1\|1037339_1038401_+	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
AZA81209.1\|1038427_1039270_+	ATPase	NA	NA	NA	NA
AZA81210.1\|1039282_1040656_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
AZA81211.1\|1040665_1041226_+	hypothetical protein	NA	NA	NA	NA
AZA85063.1\|1041419_1041845_+	DUF305 domain-containing protein	NA	NA	NA	NA
AZA81212.1\|1041882_1044009_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	7.3e-75	32.7
AZA81213.1\|1044154_1044712_+	hypothetical protein	NA	NA	NA	NA
AZA81214.1\|1044695_1046933_+	copper oxidase	NA	NA	NA	NA
AZA81215.1\|1047425_1047860_+	hypothetical protein	NA	NA	NA	NA
AZA81216.1\|1047893_1049045_+	hypothetical protein	NA	NA	NA	NA
AZA81217.1\|1050844_1052056_-\|integrase	site-specific integrase	NA	NA	NA	NA
AZA81218.1\|1052561_1053764_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	7.6e-29	33.6
AZA81219.1\|1053818_1056335_+	restriction endonuclease subunit R	NA	NA	NA	NA
AZA81220.1\|1056737_1057700_+	AAA family ATPase	Q94MN8	Myxococcus_phage	1.5e-32	37.0
AZA81221.1\|1057686_1058910_+	DUF3871 family protein	NA	NA	NA	NA
AZA81222.1\|1058924_1059530_-	hypothetical protein	NA	NA	NA	NA
AZA81223.1\|1059695_1060658_-	hypothetical protein	NA	NA	NA	NA
AZA85064.1\|1060654_1060879_-	hypothetical protein	NA	NA	NA	NA
AZA81224.1\|1061325_1061676_+	hypothetical protein	NA	NA	NA	NA
AZA81225.1\|1061947_1062394_+	DNA repair protein	NA	NA	NA	NA
AZA81226.1\|1062636_1062891_-	XRE family transcriptional regulator	NA	NA	NA	NA
AZA81227.1\|1063041_1063506_+	hypothetical protein	NA	NA	NA	NA
AZA81228.1\|1063539_1063926_+	hypothetical protein	NA	NA	NA	NA
AZA81229.1\|1063991_1064414_+	hypothetical protein	NA	NA	NA	NA
AZA81230.1\|1064455_1065190_+	serine/threonine protein phosphatase	S0A0Y6	Cellulophaga_phage	5.1e-36	34.7
AZA81231.1\|1065499_1068673_+	PDZ domain-containing protein	NA	NA	NA	NA
1065278:1065298	attR	NA	NA	NA	NA
AZA81232.1\|1069280_1071848_+	carboxypeptidase-like regulatory domain-containing protein	NA	NA	NA	NA
AZA81233.1\|1072590_1072848_+	hypothetical protein	NA	NA	NA	NA
AZA81234.1\|1072868_1073126_-	50S ribosomal protein L27	NA	NA	NA	NA
AZA81235.1\|1073138_1073717_-	50S ribosomal protein L21	NA	NA	NA	NA
AZA81236.1\|1073903_1074791_+\|protease	metalloprotease	NA	NA	NA	NA
AZA81237.1\|1074978_1075869_+\|protease	metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

1978604 : 2024782

Tupanvirus(40.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZA81964.1\|1978604_1979825_-\|transposase	IS4 family transposase	NA	NA	NA	NA
AZA81965.1\|1980046_1982344_-	glycoside hydrolase family 92 protein	NA	NA	NA	NA
AZA81966.1\|1982470_1983352_+	SDR family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	4.7e-44	37.4
AZA85099.1\|1983430_1985629_+	M1 family peptidase	NA	NA	NA	NA
AZA81967.1\|1985725_1986553_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
AZA81968.1\|1986557_1987244_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	8.2e-28	33.2
AZA81969.1\|1987256_1988585_-	sensor histidine kinase	NA	NA	NA	NA
AZA81970.1\|1988703_1989537_+	GLPGLI family protein	NA	NA	NA	NA
AZA81971.1\|1989713_1992083_+	TonB-dependent receptor	NA	NA	NA	NA
AZA81972.1\|1992191_1994057_+	M1 family peptidase	NA	NA	NA	NA
AZA81973.1\|1994092_1995478_-	phosphatase PAP2 family protein	NA	NA	NA	NA
AZA81974.1\|1995613_1996612_-\|protease	zinc metalloprotease	A0A2K9L5D3	Tupanvirus	1.4e-20	30.6
AZA81975.1\|1996962_1997973_-\|protease	zinc metalloprotease	A0A2K9KZL9	Tupanvirus	3.8e-21	29.7
AZA81976.1\|1998219_1998861_-	DNA-binding response regulator	NA	NA	NA	NA
AZA81977.1\|1998857_1999643_-	two-component sensor histidine kinase	NA	NA	NA	NA
AZA81978.1\|1999621_2000266_-	hypothetical protein	NA	NA	NA	NA
AZA81979.1\|2000286_2000808_-	hypothetical protein	NA	NA	NA	NA
AZA81980.1\|2001314_2003909_-	ATP-dependent chaperone ClpB	A0A223W0B1	Agrobacterium_phage	4.1e-120	33.9
AZA81981.1\|2004268_2004847_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AZA81982.1\|2004833_2005544_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AZA81983.1\|2005633_2006950_+	phenylacetate--CoA ligase	NA	NA	NA	NA
AZA81984.1\|2006949_2008035_+	phenylacetate-CoA oxygenase	NA	NA	NA	NA
AZA85100.1\|2008118_2009057_+	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA
AZA81985.1\|2009064_2009667_+	hypothetical protein	NA	NA	NA	NA
AZA81986.1\|2009683_2009965_+	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA
AZA81987.1\|2010073_2010823_+	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA
AZA81988.1\|2010905_2011370_+	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA
AZA81989.1\|2011468_2013301_+	hypothetical protein	NA	NA	NA	NA
AZA81990.1\|2013501_2014302_+	enoyl-CoA hydratase	NA	NA	NA	NA
AZA81991.1\|2014427_2015558_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA
AZA81992.1\|2015641_2015959_+	hypothetical protein	NA	NA	NA	NA
AZA85101.1\|2015967_2016381_+	hotdog fold thioesterase	NA	NA	NA	NA
AZA81993.1\|2016395_2017103_+	hypothetical protein	NA	NA	NA	NA
AZA81994.1\|2017162_2017861_+	hypothetical protein	NA	NA	NA	NA
AZA81995.1\|2017918_2019124_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
AZA81996.1\|2019219_2019813_+	transferase hexapeptide repeat family protein	NA	NA	NA	NA
AZA81997.1\|2019907_2020486_+\|transposase	transposase	NA	NA	NA	NA
AZA81998.1\|2020547_2021375_+	alpha/beta hydrolase	NA	NA	NA	NA
AZA81999.1\|2021517_2024013_+	phenylacetic acid degradation bifunctional protein PaaZ	NA	NA	NA	NA
AZA82000.1\|2024155_2024782_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2254372 : 2263247

Riemerella_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZA82193.1\|2254372_2254777_-	hypothetical protein	U5U4M8	Lactobacillus_phage	2.7e-10	40.3
AZA82194.1\|2254773_2255190_-	hypothetical protein	NA	NA	NA	NA
AZA82195.1\|2255287_2255521_-	hypothetical protein	NA	NA	NA	NA
AZA82196.1\|2255793_2256072_+	XRE family transcriptional regulator	NA	NA	NA	NA
AZA82197.1\|2256058_2256457_-	hypothetical protein	NA	NA	NA	NA
AZA82198.1\|2256550_2257267_-	hypothetical protein	F5A3F0	Riemerella_phage	1.5e-27	32.6
AZA82199.1\|2257289_2258198_-	hypothetical protein	A0A1L2JY26	Aeribacillus_phage	1.9e-24	59.8
AZA82200.1\|2258268_2258478_-	hypothetical protein	NA	NA	NA	NA
AZA82201.1\|2258474_2258732_-	HNH endonuclease	F5A3F4	Riemerella_phage	1.2e-24	63.1
AZA82202.1\|2258734_2259487_-	hypothetical protein	NA	NA	NA	NA
AZA82203.1\|2259483_2259672_-	hypothetical protein	NA	NA	NA	NA
AZA82204.1\|2259675_2259858_-	hypothetical protein	NA	NA	NA	NA
AZA82205.1\|2259854_2260301_-	hypothetical protein	F5A3F5	Riemerella_phage	1.7e-50	66.9
AZA82206.1\|2260302_2260518_-	hypothetical protein	NA	NA	NA	NA
AZA82207.1\|2260480_2260792_-	hypothetical protein	NA	NA	NA	NA
AZA82208.1\|2260793_2261666_-	hypothetical protein	F5A3F6	Riemerella_phage	1.0e-54	43.1
AZA82209.1\|2261655_2262090_-	hypothetical protein	NA	NA	NA	NA
AZA82210.1\|2262107_2263247_-	hypothetical protein	A0A1P8VWA1	Flavobacterium_phage	1.5e-29	42.3

DBSCAN-SWA_4

4344825 : 4406747

Bacillus_phage(25.0%)

protease,transposase,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZA83938.1\|4344825_4346046_+\|transposase	IS4 family transposase	NA	NA	NA	NA
AZA83939.1\|4346295_4349481_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	4.3e-87	26.0
AZA83940.1\|4349488_4350550_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AZA83941.1\|4350556_4351924_-	TolC family protein	NA	NA	NA	NA
AZA83942.1\|4352016_4352610_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AZA83943.1\|4352863_4353688_-	RNA-binding protein	NA	NA	NA	NA
AZA83944.1\|4353822_4354272_+	hypothetical protein	NA	NA	NA	NA
AZA83945.1\|4354329_4355121_-	SDR family oxidoreductase	NA	NA	NA	NA
AZA83946.1\|4355165_4355747_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AZA83947.1\|4355949_4356789_-	DUF4476 domain-containing protein	NA	NA	NA	NA
AZA83948.1\|4356892_4358296_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	9.8e-52	29.9
AZA83949.1\|4358423_4358771_-	hypothetical protein	NA	NA	NA	NA
AZA83950.1\|4359082_4360165_-	glycosyltransferase	NA	NA	NA	NA
AZA83951.1\|4360327_4362532_-	DNA helicase RecQ	A0A2K9L021	Tupanvirus	3.6e-85	39.2
AZA83952.1\|4362689_4363649_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	4.3e-35	31.3
AZA83953.1\|4363659_4364223_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
AZA83954.1\|4364318_4365005_+	type 1 glutamine amidotransferase domain-containing protein	NA	NA	NA	NA
AZA85236.1\|4365207_4366035_+	twin-arginine translocase subunit TatC	NA	NA	NA	NA
AZA83955.1\|4366306_4369267_+	T9SS C-terminal target domain-containing protein	NA	NA	NA	NA
AZA83956.1\|4369398_4371030_+	M1 family peptidase	NA	NA	NA	NA
AZA83957.1\|4371166_4373023_+	peptidase M61	NA	NA	NA	NA
AZA83958.1\|4373074_4374241_-	sensor histidine kinase	NA	NA	NA	NA
AZA83959.1\|4374247_4375621_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
AZA83960.1\|4375722_4376571_-	hypothetical protein	NA	NA	NA	NA
AZA83961.1\|4376570_4377263_-	dipeptidase PepE	NA	NA	NA	NA
AZA83962.1\|4377456_4378017_+	hypothetical protein	NA	NA	NA	NA
AZA83963.1\|4378139_4378628_-	DUF1905 domain-containing protein	NA	NA	NA	NA
AZA83964.1\|4378851_4379505_+	fructose-6-phosphate aldolase	H8ZMU3	Synechococcus_phage	4.1e-45	45.9
AZA83965.1\|4379585_4380143_-	sugar O-acetyltransferase	A0A1V0SJ47	Klosneuvirus	1.1e-09	33.1
AZA83966.1\|4380253_4381159_-	GLPGLI family protein	NA	NA	NA	NA
AZA85237.1\|4381215_4383111_-	hypothetical protein	NA	NA	NA	NA
AZA83967.1\|4383116_4383482_-	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA
AZA83968.1\|4383813_4384395_+	hypothetical protein	NA	NA	NA	NA
AZA83969.1\|4384748_4385195_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AZA85238.1\|4385376_4386090_+	prolyl 4-hydroxylase subunit alpha	NA	NA	NA	NA
AZA83970.1\|4386166_4386415_+	metal-binding protein	NA	NA	NA	NA
AZA83971.1\|4387213_4387825_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
AZA83972.1\|4387912_4388551_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AZA85239.1\|4388555_4389314_+	peroxide stress protein YaaA	NA	NA	NA	NA
AZA83973.1\|4389314_4390163_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
AZA83974.1\|4390227_4390587_+	DUF4180 domain-containing protein	NA	NA	NA	NA
AZA83975.1\|4391167_4391743_+	hypothetical protein	NA	NA	NA	NA
AZA83976.1\|4391750_4393307_+	hypothetical protein	NA	NA	NA	NA
AZA83977.1\|4393314_4394289_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
AZA83978.1\|4394332_4395118_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AZA83979.1\|4395276_4396365_-	AraC family transcriptional regulator	NA	NA	NA	NA
AZA83980.1\|4396396_4397050_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
AZA85240.1\|4397055_4399641_-	DNA gyrase/topoisomerase IV subunit A	A0A127AYR4	Bacillus_phage	2.4e-27	39.8
AZA83981.1\|4399615_4400125_-	hypothetical protein	NA	NA	NA	NA
AZA83982.1\|4400220_4402107_-	type IIA DNA topoisomerase subunit B	A0A172JHT4	Bacillus_phage	1.9e-66	31.9
AZA83983.1\|4402391_4403540_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
AZA83984.1\|4403798_4404092_+	hypothetical protein	NA	NA	NA	NA
AZA83985.1\|4404205_4404970_-	SDR family oxidoreductase	NA	NA	NA	NA
AZA83986.1\|4405057_4405996_-	AraC family transcriptional regulator	NA	NA	NA	NA
AZA83987.1\|4406140_4406332_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
AZA83988.1\|4406375_4406567_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
AZA83989.1\|4406585_4406747_+\|bacteriocin	bacteriocin	NA	NA	NA	NA

DBSCAN-SWA_5

5448025 : 5456370

Pelagibacter_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZA84869.1\|5448025_5448820_-	NAD(+) synthase	M1IPF8	Pelagibacter_phage	3.2e-60	52.6
AZA84870.1\|5448831_5449362_-	N-acetyltransferase	A0A1P8CWJ6	Bacillus_phage	1.0e-41	50.3
AZA84871.1\|5449362_5449890_-	N-acetyltransferase	G9BWD5	Planktothrix_phage	4.2e-16	35.3
AZA84872.1\|5449899_5450538_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA
AZA84873.1\|5450590_5451577_+	gliding motility protein GldB	NA	NA	NA	NA
AZA84874.1\|5451651_5452554_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.2e-40	44.9
AZA84875.1\|5452560_5454762_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	8.2e-05	38.2
AZA84876.1\|5454786_5455110_+	gliding motility protein GldC	NA	NA	NA	NA
AZA84877.1\|5455230_5456370_+	cystathionine gamma-synthase	A0A0B5JD48	Pandoravirus	9.8e-26	33.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage