CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033933	Chryseobacterium haifense strain G0079 chromosome, complete genome	0 crisprs	csx1,PD-DExK,WYL,DEDDh,cas3,PrimPol,csa3	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

107206 : 135106

Leptospira_phage(50.0%)

integrase,transposase

attL 125070:125085|attR 135329:135344

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZB20753.1\|107206_108472_-\|integrase	site-specific integrase	S0A3I4	Cellulophaga_phage	2.6e-19	29.4
AZB20754.1\|108487_108913_-	hypothetical protein	NA	NA	NA	NA
AZB20755.1\|108909_109176_-	hypothetical protein	NA	NA	NA	NA
AZB20756.1\|109178_109628_-	hypothetical protein	NA	NA	NA	NA
AZB20757.1\|109761_110046_+	DUF3853 family protein	NA	NA	NA	NA
AZB20758.1\|110045_110297_+	DUF3853 family protein	NA	NA	NA	NA
AZB20759.1\|110299_111010_+	hypothetical protein	NA	NA	NA	NA
AZB20760.1\|111069_111294_+	hypothetical protein	NA	NA	NA	NA
AZB20761.1\|111344_112469_+	hypothetical protein	NA	NA	NA	NA
AZB20762.1\|112523_112769_+	hypothetical protein	NA	NA	NA	NA
AZB20763.1\|112884_113724_+	DNA primase	NA	NA	NA	NA
AZB20764.1\|115097_116183_-	hypothetical protein	NA	NA	NA	NA
AZB20765.1\|116648_117602_+\|integrase	integrase	S5W9T9	Leptospira_phage	3.2e-30	31.4
AZB20766.1\|117585_118704_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AZB20767.1\|118956_120072_-	hypothetical protein	NA	NA	NA	NA
AZB20768.1\|122167_123070_-	hypothetical protein	NA	NA	NA	NA
AZB20769.1\|123167_123383_+	hypothetical protein	NA	NA	NA	NA
AZB20770.1\|123582_124593_-	DUF2971 domain-containing protein	NA	NA	NA	NA
125070:125085	attL	NA	NA	NA	NA
AZB20771.1\|125094_125862_-	hypothetical protein	NA	NA	NA	NA
AZB20772.1\|126560_127160_-	hypothetical protein	NA	NA	NA	NA
AZB20773.1\|128287_129103_-	carboxypeptidase-like regulatory domain-containing protein	NA	NA	NA	NA
AZB20774.1\|129154_130513_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	9.4e-76	38.0
AZB20775.1\|131974_132703_-	DUF4184 family protein	NA	NA	NA	NA
AZB20776.1\|133062_134016_+\|integrase	integrase	S5W9T9	Leptospira_phage	5.8e-32	32.8
AZB20777.1\|133999_135106_+\|transposase	IS91 family transposase	NA	NA	NA	NA
135329:135344	attR	NA	NA	NA	NA

DBSCAN-SWA_2

991757 : 1018610

Leptospira_phage(40.0%)

integrase,transposase

attL 1007651:1007674|attR 1018810:1018833

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZB22989.1\|991757_992891_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AZB21499.1\|993140_993539_-	hypothetical protein	NA	NA	NA	NA
AZB21500.1\|993704_994094_-	hypothetical protein	NA	NA	NA	NA
AZB21501.1\|994156_995695_-	hypothetical protein	NA	NA	NA	NA
AZB21502.1\|996230_997784_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
AZB21503.1\|998043_999000_+\|integrase	integrase	S5W9T9	Leptospira_phage	1.7e-31	31.7
AZB21504.1\|1000338_1000638_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AZB21505.1\|1000634_1000886_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
AZB21506.1\|1002055_1003723_-	abortive phage infection protein	D0UIM0	Aggregatibacter_phage	2.2e-111	38.6
AZB22990.1\|1005590_1006460_-	hypothetical protein	NA	NA	NA	NA
AZB21507.1\|1006494_1006692_+	hypothetical protein	NA	NA	NA	NA
1007651:1007674	attL	NA	NA	NA	NA
AZB21508.1\|1007729_1008791_-	class C beta-lactamase-related serine hydrolase	NA	NA	NA	NA
AZB22991.1\|1009079_1010030_-	YncE family protein	NA	NA	NA	NA
AZB21509.1\|1010074_1011034_-	putative sulfate exporter family transporter	NA	NA	NA	NA
AZB21510.1\|1011111_1012005_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	1.1e-05	22.1
AZB21511.1\|1012376_1013930_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
AZB21512.1\|1015006_1016236_-	metallophosphoesterase	A0A1V0SFZ7	Hokovirus	1.6e-10	25.7
AZB21513.1\|1016563_1017520_+\|integrase	integrase	S5W9T9	Leptospira_phage	1.7e-31	31.1
AZB21514.1\|1017503_1018610_+\|transposase	IS91 family transposase	NA	NA	NA	NA
1018810:1018833	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1344862 : 1351688

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZB21748.1\|1344862_1345408_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	4.2e-43	48.4
AZB21749.1\|1345683_1346046_+	four helix bundle protein	NA	NA	NA	NA
AZB21750.1\|1346148_1347240_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.2e-83	47.5
AZB21751.1\|1347257_1347638_+	GxxExxY protein	A0A0P0YNF4	Yellowstone_lake_phycodnavirus	3.7e-06	32.3
AZB21752.1\|1347690_1348548_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.6e-97	60.7
AZB21753.1\|1348662_1349964_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
AZB21754.1\|1350488_1350860_+	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	4.9e-19	54.8
AZB21755.1\|1350926_1351688_-	exodeoxyribonuclease III	A0A0N9QXX6	Chrysochromulina_ericina_virus	4.8e-37	37.6

DBSCAN-SWA_4

1781343 : 1821112

Acidithiobacillus_phage(25.0%)

protease,integrase,transposase

attL 1790374:1790389|attR 1828447:1828462

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZB22106.1\|1781343_1782897_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	5.9e-82	35.1
AZB22107.1\|1783182_1783974_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AZB22108.1\|1783983_1784544_-	hypothetical protein	NA	NA	NA	NA
AZB22109.1\|1784680_1785373_-	hypothetical protein	NA	NA	NA	NA
AZB22110.1\|1785372_1786299_-	thioredoxin family protein	NA	NA	NA	NA
AZB22111.1\|1787114_1787501_-	hypothetical protein	NA	NA	NA	NA
AZB22112.1\|1787560_1788193_-	hypothetical protein	NA	NA	NA	NA
AZB22113.1\|1788361_1788547_-	hypothetical protein	NA	NA	NA	NA
AZB22114.1\|1788641_1789190_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
AZB22115.1\|1789194_1789641_-	DUF417 family protein	NA	NA	NA	NA
AZB22116.1\|1789739_1790132_-	DUF302 domain-containing protein	NA	NA	NA	NA
AZB22117.1\|1790128_1790428_-	hypothetical protein	NA	NA	NA	NA
1790374:1790389	attL	NA	NA	NA	NA
AZB22118.1\|1790587_1790989_-	hypothetical protein	NA	NA	NA	NA
AZB22119.1\|1790985_1791474_-	hypothetical protein	NA	NA	NA	NA
AZB22120.1\|1791473_1792481_-	hypothetical protein	NA	NA	NA	NA
AZB22121.1\|1792486_1793389_-	pyridoxamine 5-phosphate oxidase	NA	NA	NA	NA
AZB22122.1\|1793393_1794242_-	DUF72 domain-containing protein	NA	NA	NA	NA
AZB22123.1\|1794238_1794655_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
AZB22124.1\|1794664_1795489_-	hypothetical protein	NA	NA	NA	NA
AZB22125.1\|1795558_1796050_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA
AZB22126.1\|1796176_1797541_-	mercuric reductase	A0A2K5B2C5	Erysipelothrix_phage	5.4e-63	33.3
AZB22127.1\|1797554_1798997_-	hypothetical protein	NA	NA	NA	NA
AZB22128.1\|1799091_1799553_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
AZB22129.1\|1799572_1800796_-	alpha/beta fold hydrolase	NA	NA	NA	NA
AZB22130.1\|1800805_1801261_-	DUF2007 domain-containing protein	NA	NA	NA	NA
AZB22131.1\|1801267_1802425_-	ergothioneine biosynthesis protein EgtB	NA	NA	NA	NA
AZB22132.1\|1802534_1803137_-	uracil-DNA glycosylase family protein	NA	NA	NA	NA
AZB22133.1\|1803129_1803750_-	hypothetical protein	NA	NA	NA	NA
AZB22134.1\|1803766_1804051_-	DUF427 domain-containing protein	NA	NA	NA	NA
AZB22135.1\|1804050_1804497_-	hypothetical protein	NA	NA	NA	NA
AZB22136.1\|1804513_1805236_-	hypothetical protein	NA	NA	NA	NA
AZB22137.1\|1805239_1805533_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
AZB22138.1\|1805557_1806529_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA
AZB22139.1\|1806539_1806815_-	hypothetical protein	NA	NA	NA	NA
AZB22140.1\|1806827_1807280_-	hypothetical protein	NA	NA	NA	NA
AZB22141.1\|1807837_1809037_-	DUF2813 domain-containing protein	NA	NA	NA	NA
AZB22142.1\|1809550_1810570_+	hypothetical protein	NA	NA	NA	NA
AZB22143.1\|1810572_1815732_+\|protease	serine protease	NA	NA	NA	NA
AZB22144.1\|1815724_1815955_+	hypothetical protein	NA	NA	NA	NA
AZB22145.1\|1815971_1816202_+	hypothetical protein	NA	NA	NA	NA
AZB22146.1\|1816573_1817518_-\|transposase	DDE transposase	NA	NA	NA	NA
AZB22147.1\|1817537_1817900_-\|transposase	transposase family protein	NA	NA	NA	NA
AZB22148.1\|1818135_1819404_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	2.6e-35	34.3
AZB22149.1\|1819704_1819887_+	hypothetical protein	NA	NA	NA	NA
AZB22150.1\|1820155_1821112_+\|integrase	integrase	S5W9T9	Leptospira_phage	1.7e-31	31.1
1828447:1828462	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage