CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033506	Staphylococcus aureus strain ATCC BAA-39 chromosome, complete genome	11 crisprs	cas3,DEDDh,DinG,csa3,WYL	8	0	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP033506_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033506_1

171992-172073

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033506_1

>merge|CP033506|1|171992-172073|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGG

>CP033506|1|1|171992-172073|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP033506.1\|AYU98521.1\|177118_177478_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227896
CP033506.1\|AYU98509.1\|166545_166923_+\|UDP-N-acetylglucosamine-2-epimerase	unknown	unknown	gnl\|CDD\|223458
CP033506.1\|AYU98518.1\|174126_175101_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270271
CP033506.1\|AYU98514.1\|170883_171843_+\|Cobalt-zinc-cadmium-resistance-protein	unknown	unknown	gnl\|CDD\|224151
CP033506.1\|AYU98524.1\|180759_187845_+\|polyketide-synthase	unknown	unknown	gnl\|CDD\|237108
CP033506.1\|AYU98517.1\|173372_174113_+\|ABC-transporter,-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
CP033506.1\|AYU98508.1\|165576_166467_+\|UDP-N-acetyl-D-mannosamine-dehydrogenase	unknown	unknown	gnl\|CDD\|223749
CP033506.1\|AYU98505.1\|162491_163697_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5L	unknown	unknown	gnl\|CDD\|340825
CP033506.1\|AYU98522.1\|177501_178677_+\|NAD-dependent-formate-dehydrogenase	unknown	unknown	gnl\|CDD\|181041
CP033506.1\|AYU98523.1\|179062_180313_+\|Integral-membrane-protein	unknown	unknown	gnl\|CDD\|340887
CP033506.1\|AYU98510.1\|167056_167554_+\|UDP-N-acetylglucosamine-2-epimerase	unknown	unknown	gnl\|CDD\|223458
CP033506.1\|AYU98507.1\|164264_165152_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8N	unknown	unknown	gnl\|CDD\|187543
CP033506.1\|AYU98516.1\|172518_173031_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379428
CP033506.1\|AYU98506.1\|163707_164265_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8M	unknown	unknown	gnl\|CDD\|225059
CP033506.1\|AYU98515.1\|172136_172340_-\|hypothetical-protein	unknown	unknown	unknown
CP033506.1\|AYU98513.1\|168749_170237_+\|Aldehyde-dehydrogenase-B	unknown	unknown	gnl\|CDD\|143435
CP033506.1\|AYU98519.1\|175318_175858_+\|ABC-transporter,-permease-protein-(cluster-10,-nitrate/sulfonate/bicarbonate)	unknown	unknown	gnl\|CDD\|223673
CP033506.1\|AYU98511.1\|167606_167933_-\|Heme-degrading-monooxygenase,-staphylobilin-producing	unknown	unknown	gnl\|CDD\|183968
CP033506.1\|AYU98512.1\|167939_168323_-\|Inner-membrane-protein-YbaN	unknown	unknown	gnl\|CDD\|377291
CP033506.1\|AYU98520.1\|175867_176902_+\|Acyl-CoA-dehydrogenase,-short-chain-specific	unknown	unknown	gnl\|CDD\|224871

Protein	Function_ID	Function_description	E-value
CP033506.1\|AYU98521.1\|177118_177478_+\|hypothetical-protein	gnl\|CDD\|227896	COG5609, COG5609, Uncharacterized conserved protein [Function unknown].	6.06834e-49
CP033506.1\|AYU98509.1\|166545_166923_+\|UDP-N-acetylglucosamine-2-epimerase	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	7.74033e-56
CP033506.1\|AYU98518.1\|174126_175101_+\|hypothetical-protein	gnl\|CDD\|270271	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes nitrate (NrtA) and bicarbonate (CmpA) receptors. These domains are found in eubacterial perisplamic-binding proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. These binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.03649e-50
CP033506.1\|AYU98514.1\|170883_171843_+\|Cobalt-zinc-cadmium-resistance-protein	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	3.08716e-108
CP033506.1\|AYU98524.1\|180759_187845_+\|polyketide-synthase	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
CP033506.1\|AYU98517.1\|173372_174113_+\|ABC-transporter,-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.48266e-112
CP033506.1\|AYU98508.1\|165576_166467_+\|UDP-N-acetyl-D-mannosamine-dehydrogenase	gnl\|CDD\|223749	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane].	6.11356e-140
CP033506.1\|AYU98505.1\|162491_163697_+\|Capsular-polysaccharide-synthesis-enzyme-Cap5L	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	1.1999e-72
CP033506.1\|AYU98522.1\|177501_178677_+\|NAD-dependent-formate-dehydrogenase	gnl\|CDD\|181041	PRK07574, PRK07574, NAD-dependent formate dehydrogenase.	0
CP033506.1\|AYU98523.1\|179062_180313_+\|Integral-membrane-protein	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.61322e-72
CP033506.1\|AYU98507.1\|164264_165152_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8N	gnl\|CDD\|187543	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	8.67203e-118
CP033506.1\|AYU98512.1\|167939_168323_-\|Inner-membrane-protein-YbaN	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	7.54946e-41
CP033506.1\|AYU98506.1\|163707_164265_+\|Capsular-polysaccharide-synthesis-enzyme-Cap8M	gnl\|CDD\|225059	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane].	3.08096e-87
CP033506.1\|AYU98510.1\|167056_167554_+\|UDP-N-acetylglucosamine-2-epimerase	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	1.0145e-76
CP033506.1\|AYU98513.1\|168749_170237_+\|Aldehyde-dehydrogenase-B	gnl\|CDD\|143435	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.	0
CP033506.1\|AYU98519.1\|175318_175858_+\|ABC-transporter,-permease-protein-(cluster-10,-nitrate/sulfonate/bicarbonate)	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	4.24256e-54
CP033506.1\|AYU98511.1\|167606_167933_-\|Heme-degrading-monooxygenase,-staphylobilin-producing	gnl\|CDD\|183968	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI.	1.40112e-64
CP033506.1\|AYU98516.1\|172518_173031_+\|hypothetical-protein	gnl\|CDD\|379428	pfam14026, DUF4242, Protein of unknown function (DUF4242). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 90 and 170 amino acids in length. There is a single completely conserved residue C that may be functionally important.	2.56603e-26
CP033506.1\|AYU98520.1\|175867_176902_+\|Acyl-CoA-dehydrogenase,-short-chain-specific	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	2.63983e-20

>CP033506.1|AYU98514.1|170883_171843_+|Cobalt-zinc-cadmium-resistance-protein
MNGKKANTINRYKYFHHVNHQKIQQSSKKTLWASLIITLLFTVIEFVGGLVSNSLALLSDSFHMLSDVLALGLSMLAIYFASKKPTARYTFGYLRFEILAAFLNGLALIVISIWILYEAIVRIIYPQPIESGIMFMIASIGLLVNIILTIILVRSLKQEDNINIQSALWHFMGDLLNSIGVIVAVVLIYFTGWRIIDPIISIVISLIILRGGYKITRNAWLILMESVPQHLDTDQIMADIKNIDGILDVHEFHLWSITTEHYSLSAHVVLDKKYEGDDYQAIDQVSSLLKEKYGIAHSTLQIENLQLNPLDEPYFDKLT
>CP033506.1|AYU98513.1|168749_170237_+|Aldehyde-dehydrogenase-B
MAVNVRDYIAENYGLFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAFESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIETEEGTVNDIDKDTMSIVRHEPIGVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEVLPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAKHLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQDEATQMGSQTGKDQLDKIQSYIDAAKESDAQILAGGHRLTENGLDKGFFFEPTLIAVPDNHHKLAQEEIFGPVLTVIKVKDDKEAIDIANDSEYGLAGGVFSQNITRALNIAKAVRTGRIWINTYNQVPEGAPFGGYKKSGIGRETYKGALSNYQQVKNIYIDTSNALKGLY
>CP033506.1|AYU98512.1|167939_168323_-|Inner-membrane-protein-YbaN
MRLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYVENFYLHRGYTLQQKIKILISLYIVIAFSIYMVDVLAVRVGLIIMVIIQTAVLFTFVKTLPKSNHKIEE
>CP033506.1|AYU98511.1|167606_167933_-|Heme-degrading-monooxygenase,-staphylobilin-producing
MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKYDIGYHYQK
>CP033506.1|AYU98510.1|167056_167554_+|UDP-N-acetylglucosamine-2-epimerase
MHQIFKAVRDLADEYKDVVFIYPMHRNPKVRAIAEKYLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAPTFGKPVLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGDGQASRRICEAIEYYFGLRSDKPDEFVPL
>CP033506.1|AYU98509.1|166545_166923_+|UDP-N-acetylglucosamine-2-epimerase
MLDSVLSIFDIQADHDLNIMQDQQTLAGLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYHQIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLLKTKTKSVS
>CP033506.1|AYU98508.1|165576_166467_+|UDP-N-acetyl-D-mannosamine-dehydrogenase
MDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEMANKHPRVNIHQPGPGVGGHCLAIDPYFIIAKDPENAKLIQTGREINNSMPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELDFVEHDMSHAVKDASLVLILSDHSEFKNLSDSHFDKMKHKVIFDTKNVVKSSFEDVSYYNYGNIFNFIDK
>CP033506.1|AYU98507.1|164264_165152_+|Capsular-polysaccharide-synthesis-enzyme-Cap8N
MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINMPSMLNKYFNKLSVFRKLFGNLIYSNTLYENNNALEVIPGKMSLVIADIMDETTTKDKA
>CP033506.1|AYU98506.1|163707_164265_+|Capsular-polysaccharide-synthesis-enzyme-Cap8M
MKRLFDVVSSIYGLVVLSPILLITALLIKMESPGPAIFKQKRPTINNELFNIYKFRSMKIDTPNVATDLMDSTSYITKTGKVIRKTSIDELPQLLNVLKGEMSIVGPRPALYNQYELIEKRTKANVHTIRPGVTGLAQVMGRDDITDDQKVAYDHYYLTHQSMMLDMYIIYKTIKNIVTSEGVHH
>CP033506.1|AYU98505.1|162491_163697_+|Capsular-polysaccharide-synthesis-enzyme-Cap5L
MSEKKILILCQYFYPEYVSSATLPTQLAEDLIANHINVDVMCGWPYEYSNHKQVSKTEMHRGIRIRRLKYSRFNNKSKVGRIINFFSLFSKFVINIPKMLKYDQILVYSNPPILPLIPDVLHRLLKKKYSFVVYDIAPDNAIKTGATRPGSMIDKLMRYINRHVYKNAENVIVLGTEMKNYLLNHQISKNADNIHVIPNWYDMRQLQDNRIYNDTFKAYREQYDKILLYSGNMGQLQDMETLISFLKLNKDQPQTLTILCGHGKKFADVKTAIEDHRIENVKMFEFLTGTDYADVLKIADVCIASLIKEGVGLGVPSKNYGYLAAKKALVLIMDKQSDIVQHVEQYDAGIQIDNGDAHAIYNFINTHSSKELHEMGERAHQLFKDKYTREINTMKYYNLLK
>CP033506.1|AYU98515.1|172136_172340_-|hypothetical-protein
MDKESVVASLARNKKIAVETMAGQRYIIERILHTNDEKHIHILKPKDVVLDVDSIKEIDENHLNDAT
>CP033506.1|AYU98516.1|172518_173031_+|hypothetical-protein
MTLFLLEANNLDFASTKEELEAKAASLSTKTIPTLIEVQATENLTHGYFIVEANDEAEAKQFLTEADISIQLVKEVRLVGKDLDEVKNGDAHVDYLVTWNIPEGITMDQYLARKKKNSVHYEEVPEVEFKRTYVCEDMSKCICLYNAPDEEAVRRARKAVDTPIDGIEKL
>CP033506.1|AYU98517.1|173372_174113_+|ABC-transporter,-ATP-binding-protein
MIKIQQLQHHFGSLKVIHNFNLDISKGEIVTFIGKSGCGKSTLLNIIGGFIHPSSGRVIIDNEIKQQPSPDCLMLFQHHNLLPWKTINDNIRIGFQQKISDEEINAQLKLVDLEGRGKHFPEQLSGGMKQRVALCRAHVHKPNVILMDEPLGALDAFTRYKLQDQLVQLKHKTQSTIILVTHDIDEAIYLSDRIVLLGEGCNIISQYEITASHPRSRNDSHLLKIRNEIMETFALNHHQVEPEYYL
>CP033506.1|AYU98518.1|174126_175101_+|hypothetical-protein
MKRLSIIVIIGIFIIIGCDWQRTSKEPSKNAQNQQVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEMSPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQSRDVLTQSAAWTSYGDLTIKPSGYQEITTLVKQHHLFNPPAYDDFVEPSLYKEASRS
>CP033506.1|AYU98519.1|175318_175858_+|ABC-transporter,-permease-protein-(cluster-10,-nitrate/sulfonate/bicarbonate)
MLVAIPLGFLLGRNRWLYNAIEPLFQLIRPISPIAWAPFVVLWFGIGSLPAIAIIFIAAFFPIVFNTIKGVRDIEPQYLKIAANLNLTGWSLYRNILFPGAFKQIMAGIHMAVGTSWIFLVSGEMIGAQSGLGFLIVDARNMLNLEDVLAAIFFIGLFGFIIDRFISYIEQFILRRFGE
>CP033506.1|AYU98520.1|175867_176902_+|Acyl-CoA-dehydrogenase,-short-chain-specific
MMTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEAALRKNAEVIEAVSQSCLTTGFCLWCQLAFSTYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTYVDGQLVVSGRMPAVSNIQEDHYFGAISKHESSDEFVMFILRANQDGITLVEKTNFLGVNGSATYQITLNQVVVPQSQIITHDAKQFAATIRPQFIAYQIPIGLGSIKSSLELIDAFSNAQNGINQYLEYDVEAFKKRYRQLREEYYAILDDGNLTSHLSELISLKKDIGYLLLDVNQASVVNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHLGKLEAELKG
>CP033506.1|AYU98521.1|177118_177478_+|hypothetical-protein
MNTIDTHTKEQQFSNLVRSYRKEYVGKGPNSIRVSFKDNWAIAHMTGVLSKVESFYLNDKRNESMLHYTRTEKIKQMYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
>CP033506.1|AYU98522.1|177501_178677_+|NAD-dependent-formate-dehydrogenase
MLFANFALNLTIIQGGGMSNGAVFFVIFLKQATCNTYFKEVKIYHLGEMDMKIVALFPEAVEGQENQLLNTKKALGLKTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGVGSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQVGNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVSTSDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAGDVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDIIVASGRIASKSYTAK
>CP033506.1|AYU98523.1|179062_180313_+|Integral-membrane-protein
MKRLSTTLKVRLISNFLQLIITTAFIPFIALYLTDMLSQSIVGIYLVGLVVLKFPLSIISGYLIEIFPKKLLVLIYQATMVIMLVFMGVFGSHQLWQIIGFCVAYAIFTIVWGLQFPVMDTLIMDAITEDVEHYIYKISYWMTNLSVAIGALLGGLMYGYSMLLLFLIAACIFLIVLFILYIWLPQDRNQVKQSDDKRHASRYQKLQIMNIFRSYKLVLKDRNYMLLISGFSIIMMGEFSISSYIAIRLKDQFETISIGSYDITGAKMLAILLMINTVVVILLTYSISKVVLKIDFKKALITGLLIYIVGYSGLTYLNQFGLLVVFMIIATVGEIIYSPIVSEQRFKIIPKAKRGTYSAVNALGIHFSETLARLGIVLGVFLTSLQMGLYMFIVLTIGASMLVAGVFGGQKQVNTN
>CP033506.1|AYU98524.1|180759_187845_+|polyketide-synthase
MIMGNLRFQQEYFRIYKNNTESTTHRNAYWVKLAKNVEATKMMYALSTIVQQHASIRHFFDVTTDDNLTMILHEFLPFIEIKQVPSSSANYDLEAFFKQELSTYHFNDSPLFKVKLFQFADAAYILLDFHVSIFDDSQIDIFLDDLCNAYRGNTVINNTRQHAHINRNDDKDNQDASHIALDSNYFRLENNSDIHIDSYFPIKHPFEQALYQTYLIDDMTSIDMASLAVSVYLANHIMSQQHDVTLGIHVPSHLPNDLHGNIVPLTLTIDAKDVCQRFTTDFNKCVLQNMSQLQCAKSSLSLETIFHCYHHMMSCCNDVIEDVHQIHDAHTSLADIEIFPHQHGFKIIYNSAAYDLLSIETLSDLVRNIYLQITEENGNKRTTVDELNLMTERDIQLYDDINLSLPEIDDAQTVVTLFEQQVEATPNHVAVQFDGVFITYQTLNARANDLAHRLRNQYGVEPNDRVAVIAEKSIEMIIAMIGVLKAGGAYVPIDPNYPSDRQEYILKDVTPKVVITYQALYENGKQNINHIDLNKIAWKNIDNLSKCNTLEDHAYVIYTSGTTGNPKGTLIPHRGIVRLVHQNHYVPLNEETTILLSGTIAFDAATFEIYGTLLNGGKLIVAKKEQLLNPIAVEQLINENDVNTMWLTSSLFNQIASERIEVLVPLKYLLIGGEVLNAKWVDLLNQKPKHPQIINGYGPTENTTFTTTYNIPNKVPNRIPIGKPILGTHVYIMQGERRCGVGIPGELCTSGFGLAAGYLNQPELTADKFIKDSNINQLMYRSGDIVRLLPDGNIDYLYRKDKQVKIRGFRIELSEVEHALERIQGINKAVVIVQNHDQDQYIVAYYEAMHTLSHNKIKSQLRMTLPEYMIPVNFMHIEQIPITINGKLDKKALPIMDYVDTDAYVAPSTDTEHLLCQIFADILHVNQVGIHDNFFELGGHSLKATLVVNRIEASTGKRLQIGDLLQKPTVFELAQAIAKVQEQNYEVIPETIVKDDYVLSSAQKRMYLLWKSNHKDTVYNVPFLWRLSSELNVAQLRQAVQRLIARHEILRTQYIVVDDEVRQRIVADVAVDFEEVNTHFTDEQEIMRQFVAPFNLEKPSQIRVRYIRSPLHAYLFIDTHHIINDGMSNIQLMNDLNALYQHKLLLPLKLQYKDYSEWMSHRDMTKHRQYWLSQFKDEVPILSLPTDYVRPNIKTTNGAMMSFTMNQQMRQLLQKYVEKHQITDFMFFMSVVMTLLSRYARKDDVVVGSVMSARMHKGTEQMLGMFANTLVYRGQPSPDKMWTQFLQEVKEMSLEAYEHQEYPFECLVNDLDQSHDASRNPLFDVMLVLQNNETNHAHFGHSKLTHIQPKSVTAKFDLSFIIEEDRDDYIINIEYNTDLYHSETVRHMGNQCMIMIDYILKHQDTLQICDIPNGTEELLNWVNTHVNDRMLNVPGNKSIISYFNEAVSRQGNHVALVMNDLTMTYETLRNYVDAIAHMLLSNGVGNGQRVALFTERSFEMIAAMLATVKVGASYIPIDIDFPKKRQGAILEDAKVTAVMSYGVEIETTLPVIQLENAKGFVESKENEQYDDLHGNQLENTAMLDNEMYAIYTSGTTGMPKGVAIRQRNLLNLVHAWSTELQLGDNEVFLQHANIVFDASVMEIYCCLLNGHTLVIPDREERVNPAQLQQLINKHRVTVASIPLQMCSVMEDFYIEKLITGGATSTASFVKYIEKHCGTYFNAYGPSESTVITSYWSHHCGDLIPEMIPIGKPLSNIQVYIMSDGLLCGIGMPGELCIAGDSLAIGYINRPELMADKWQNNPFGKGKLYHSGDLARYTSDGQIEFLGRIDKQVKVNGYRIELDEIENAILAIRGISDCVVTVSHFDTHDILNAYYVGEQQMEQDLKQYLNDHLPKYMIPKTITHIDCMPLTTNDKVDTTRLPNPSPIQQSNKVYSEPSNEIEQTFVDVFGEVLKQNDVGVDDDFFELGGNSLEAMLVVSHLKRFGHHISMQTLYQYKTVRQIVNYMHQNQQSLVALPDNLSELQKIVMSRYNLGVLEDSLSHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKEIELVSDESFNEILQKQDMYETIGLTSVDREQQLAMIDTTLTLK

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Crispr_ID: CP033506_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033506_2

294998-295138

Orphan

Consensus_repeat	Method
GGGCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033506_2

>merge|CP033506|2|294998-295138|CRISPRCasFinder
GGGCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGAAAGTCAGCATACAATAATGTGCAAGTTGGCGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGG

>CP033506|2|2|294998-295138|CRISPRCasFinder
GGGCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGG	CGGAAAGTCAGCATACAATAATGTGCAAGTTGGCG
GGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP033506.1\|AYU98611.1\|295388_296150_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
CP033506.1\|AYU98613.1\|297309_297714_-\|D-ribose-pyranase	unknown	unknown	gnl\|CDD\|183318
CP033506.1\|AYU98612.1\|296400_297159_-\|Ribokinase	unknown	unknown	gnl\|CDD\|274000
CP033506.1\|AYU98618.1\|301936_302929_+\|Choloylglycine-hydrolase	unknown	unknown	gnl\|CDD\|225591
CP033506.1\|AYU98602.1\|285187_286909_+\|Glycosyl-transferase-family-protein,-putative	unknown	unknown	gnl\|CDD\|376098
CP033506.1\|AYU98606.1\|290586_291024_+\|Antiholin-like-protein-LrgA	unknown	unknown	gnl\|CDD\|235222
CP033506.1\|AYU98616.1\|300103_300265_+\|Transposase,-IS4-family	unknown	unknown	gnl\|CDD\|226192
CP033506.1\|AYU98615.1\|298844_299843_-\|Ribose-operon-repressor	unknown	unknown	gnl\|CDD\|224525
CP033506.1\|AYU98609.1\|292678_293470_+\|PTS-system,-N-acetylglucosamine-specific-IIA-component-/-PTS-system,-N-acetylglucosamine-specific-IIB-component-/-PTS-system,-N-acetylglucosamine-specific-IIC-component	unknown	unknown	gnl\|CDD\|225101
CP033506.1\|AYU98614.1\|297728_298397_-\|Putative-ribose-uptake-protein-RbsU,-GRP-transporter-family	unknown	unknown	gnl\|CDD\|284268
CP033506.1\|AYU98607.1\|291016_291718_+\|LrgA-associated-membrane-protein-LrgB	unknown	unknown	gnl\|CDD\|179810
CP033506.1\|AYU98608.1\|291825_292530_-\|Transcriptional-regulator,-GntR-family	unknown	unknown	gnl\|CDD\|225099
CP033506.1\|AYU98601.1\|283466_285155_+\|CDP-ribitol-ribitolphosphotransferase	unknown	unknown	gnl\|CDD\|367953
CP033506.1\|AYU98604.1\|287970_289725_+\|Autolysis-histidine-kinase-LytS	unknown	unknown	gnl\|CDD\|225814
CP033506.1\|AYU98605.1\|289727_290468_+\|Autolysis-response-regulater-LytR	unknown	unknown	gnl\|CDD\|184495
CP033506.1\|AYU98610.1\|293485_294646_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|181973
CP033506.1\|AYU98619.1\|303254_304205_+\|Glycyl-glycine-endopeptidase-LytM-precursor	unknown	unknown	gnl\|CDD\|366703
CP033506.1\|AYU98620.1\|304256_304535_-\|ABC-transporter,-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213197
CP033506.1\|AYU98617.1\|300326_301703_-\|putative-MFS-type-transporter	unknown	unknown	gnl\|CDD\|129794
CP033506.1\|AYU98603.1\|287052_287727_+\|Repair-of-Iron-Centers-di-iron-protein	unknown	unknown	gnl\|CDD\|183940

Protein	Function_ID	Function_description	E-value
CP033506.1\|AYU98611.1\|295388_296150_-\|SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.03413e-27
CP033506.1\|AYU98613.1\|297309_297714_-\|D-ribose-pyranase	gnl\|CDD\|183318	PRK11797, PRK11797, D-ribose pyranase; Provisional.	2.3935e-68
CP033506.1\|AYU98612.1\|296400_297159_-\|Ribokinase	gnl\|CDD\|274000	TIGR02152, Putative_ribokinase, ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not. [Energy metabolism, Sugars].	3.95609e-121
CP033506.1\|AYU98618.1\|301936_302929_+\|Choloylglycine-hydrolase	gnl\|CDD\|225591	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane].	1.22357e-151
CP033506.1\|AYU98602.1\|285187_286909_+\|Glycosyl-transferase-family-protein,-putative	gnl\|CDD\|376098	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1. Beta-glycosyltransferase TarS is an enzyme responsible for the glycosylation of wall teichoic acid polymers of the S. aureus cell wall, a process that has been shown to be specifically responsible for methicillin resistance in MRSA. It contains a trimerization domain composed of tandem carbohydrate binding motifs.The two C-terminally localized regions composed of a series of beta-sheets participate in an extensive trimerization interface and they assume an immunoglobulin-like fold. It is suggested that both carbohydrate binding domains may be involved in polyRboP binding, however unlike pullulanase, the CBMs of TarS are involved in the formation of an extensive trimerization interface.	4.75037e-35
CP033506.1\|AYU98606.1\|290586_291024_+\|Antiholin-like-protein-LrgA	gnl\|CDD\|235222	PRK04125, PRK04125, antiholin-like protein LrgA.	2.74631e-64
CP033506.1\|AYU98616.1\|300103_300265_+\|Transposase,-IS4-family	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.000324958
CP033506.1\|AYU98615.1\|298844_299843_-\|Ribose-operon-repressor	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	4.99368e-99
CP033506.1\|AYU98609.1\|292678_293470_+\|PTS-system,-N-acetylglucosamine-specific-IIA-component-/-PTS-system,-N-acetylglucosamine-specific-IIB-component-/-PTS-system,-N-acetylglucosamine-specific-IIC-component	gnl\|CDD\|225101	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism].	1.8481e-54
CP033506.1\|AYU98614.1\|297728_298397_-\|Putative-ribose-uptake-protein-RbsU,-GRP-transporter-family	gnl\|CDD\|284268	pfam06800, Sugar_transport, Sugar transport protein. This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins, ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes. These members are transmembrane proteins which are usually 5+5 duplications. This model recognizes a set of five TMs,.	3.44934e-91
CP033506.1\|AYU98607.1\|291016_291718_+\|LrgA-associated-membrane-protein-LrgB	gnl\|CDD\|179810	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional.	5.86643e-124
CP033506.1\|AYU98608.1\|291825_292530_-\|Transcriptional-regulator,-GntR-family	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	1.3822e-62
CP033506.1\|AYU98601.1\|283466_285155_+\|CDP-ribitol-ribitolphosphotransferase	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	4.42901e-119
CP033506.1\|AYU98604.1\|287970_289725_+\|Autolysis-histidine-kinase-LytS	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
CP033506.1\|AYU98605.1\|289727_290468_+\|Autolysis-response-regulater-LytR	gnl\|CDD\|184495	PRK14084, PRK14084, DNA-binding response regulator.	9.61135e-152
CP033506.1\|AYU98610.1\|293485_294646_+\|6-phospho-beta-glucosidase	gnl\|CDD\|181973	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed.	0
CP033506.1\|AYU98619.1\|303254_304205_+\|Glycyl-glycine-endopeptidase-LytM-precursor	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	6.32575e-32
CP033506.1\|AYU98620.1\|304256_304535_-\|ABC-transporter,-ATP-binding-protein	gnl\|CDD\|213197	cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A. This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	3.8205e-24
CP033506.1\|AYU98617.1\|300326_301703_-\|putative-MFS-type-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.20037e-31
CP033506.1\|AYU98603.1\|287052_287727_+\|Repair-of-Iron-Centers-di-iron-protein	gnl\|CDD\|183940	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA.	8.44414e-154

>CP033506.1|AYU98610.1|293485_294646_+|6-phospho-beta-glucosidase
MTKLPQNFMWGGALAANQFEGGYDKGGKGLSVIDVMTSGAHGKARQITESIDPNHYYPNHEGIDFYHRYKEDIALFKEMGLKCLRTSIAWTRIFPNGDEGVPNEEGLAFYDRIFDELIAQGIEPVVTLSHFEMPLHLAKHYGGFRNREVVDYFVHFARVVFERYKDKVTYWMTFNEINNQMDTSNPIFLWTNSGVALTENDNPEEVLYQVAHHELLASALAVRLGKEINPKFKIGTMISHVPIYPYSCHPKDMMEAQIANRLRFFFPDVQVRGYYPSYAKKMLARKGYDVGWQEGDDSILQQGTVDYIGFSYYMSTAVKHDVDTTVENNIVNGDLNHSVENPHIATSDWGWAIDPDGLRYTLNVLYDRYQLPLLLWKMVLVQLMKW
>CP033506.1|AYU98609.1|292678_293470_+|PTS-system,-N-acetylglucosamine-specific-IIA-component-/-PTS-system,-N-acetylglucosamine-specific-IIB-component-/-PTS-system,-N-acetylglucosamine-specific-IIC-component
MSNKYKEQAQDILTAVGGVENIVDATYDTKCITIHMQHTIPSTANEVKQIVDVTSVAENDAQLVIKLNGNVDEVYQQLQRLIKNANVEESENTDNINSQDTSYTPQVKVTTPILVKAPIAGRRILLKEVRDSIFREKMVGEGLAIKAHEESKVIAPFNGLVSMIVPTKHAVGIQSEDGVDIVIHIGVNTVDLEGKGFKCFVKQNDHVEAGQTLLQFDQQYIQQQGYNADVIVVISNSADLGKVELTMNEIITTEDVIFKIFKN
>CP033506.1|AYU98608.1|291825_292530_-|Transcriptional-regulator,-GntR-family
MLKYEHIAKQLNAFIHQSNFKPGDKLPSVTQLKERYQVSKSTIIKALGLLEQDGLIYQAQGSGIYVRNIADANRINVFKTNGFSKSLGEHRMTSKVLVFKEMATPPKSVQDELQLNADDTVYYLERLRFVDDDVLCIEYSYYHKEIVKYLNDDIAKGSIFDYLESNMKLRIGFSDIFFNVDKLTSSEASLLQLSTGEPCLRYHQTFYTMTGKPFDSSDIVFHYRHAQFYIPSKK
>CP033506.1|AYU98607.1|291016_291718_+|LrgA-associated-membrane-protein-LrgB
MINHLALNTPYFGILLSVIPFFLATILFEKTNRFFLFAPLFVSMVFGVAFLYLTGIPYKTYKIGGDIIYFFLEPATICFAIPLYKKREVLVKHWHRIIGGIGIGTVVALLIILTFAKLAQFANDVILSMLPQAATTAIALPVSAGIGGIKELTSLAVILNGVIIYALGNKFLKLFRITNPIARGLALGTSGHTLGVAPAKELGPVEESMASIALVLVGVVVVAVVPVFVAIFF
>CP033506.1|AYU98606.1|290586_291024_+|Antiholin-like-protein-LrgA
MKQQKDASKPAHFFHQVIVIALVLFVSKIIESFMPIPMPASVIGLVLLFVLLCTGAVKLGEVEKVGTTLTNNIGLLFVPAGISVVNSLGVISQAPFLIIGLIIVSTILLLICTGYVTQIIMKVTSRSKGDKVTKKIKIEEAQAHD
>CP033506.1|AYU98605.1|289727_290468_+|Autolysis-response-regulater-LytR
MKALIIDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQYDIIFLDVNLMDENGIELGAKIQKMKEPPAIIFATAHDQYAVQAFELNATDYILKPFGQKRIEQAVNKVRATKAKDDNSANAIANDMSANFDQSLPVEIDDKIHMLKQQNIIGIGTHNGITTIHTTNHKYETTEPLNRYEKRLNPTYFIRIHRSYIINTKHIKEVQQWFNYTYMVILTNGVKMQVGRSFMKDFKASIGLL
>CP033506.1|AYU98604.1|287970_289725_+|Autolysis-histidine-kinase-LytS
MLSLTMLLLERVGLIIILAYVLMNIPYFKNLMNRRRTWKARWQLCIIFSLFALMSNLTGIVIDHQHSLSGSVYFRLDDDVSLANTRVLTIGVAGLVGGPFVGLFVGVISGIFRVYMGGADAQVYLISSIFIGIIAGYFGLQAQRRKRYPSIAKSAMIGIVMEMIQMLSILTFSHDKAYAVDLISLIALPMIIVNSVGTAIFMSIIISTLKQEEQMKAVQTHDVLQLMNQTLPYFKEGLNRESAQQIAMIIKNLMKVSAVAITSKNEILSHVGAGSDHHIPTNEILTSLSKDVLKSGKLKEVHTKEEIGCSHPNCPLRAAIVIPLEMHGSIVGTLKMYFTNPNDLTFVERQLAEGLANIFSSQIELGEAETQSKLLEDAEIKSLQAQVSPHFFFNSINTISALVRINSEKARELLLELSYFFRANLQGSKQHTITLDKELSQVRAYLSLEQARYPGRFNININVEDKYRDMLVPPFLIQILVENAIKHAFTNRKQGNDIDVSVIKETATHVRIIVQDNGQGISKDKMHLLGETSVESESGTGSALENLNLRLKGLFGKSAALQFESTSSGTTFWCVLPYERQEEE
>CP033506.1|AYU98603.1|287052_287727_+|Repair-of-Iron-Centers-di-iron-protein
MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQYIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKETYDTFKNGMLEHMQKEDDVDFPKLIKYEQGKVVDDINTVIDDLVSDHIATGQLLVKMSDLTSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
>CP033506.1|AYU98602.1|285187_286909_+|Glycosyl-transferase-family-protein,-putative
MMKFSVIVPTYNSEKYMTELLNSLAKQDFPKTEFEVVVVDDCSTDQTLQIVEKYRNKLNLKVSQLETNSGGPGKPRNVALKQAEGEFVLFVDSDDYINKETLKDAAAFIDEHHSDVLLIKMKGVNGRGVPQSMFKETAPEVTLLNSRIIYTLSPTKIYRTALLKDNDIYFPEELKSAEDQLFTMKAYLNANRISVLSDKAYYYATKREGEHMSSAYVSPEDFYEVMRLIAVEILNADLEEAHKDQILAEFLNRHFSFSRTNGFSLKVKLEDQPQWINALGDFIQAVPERVDALVMSKLRPLLHYARAKDIDNYRTVEESYRQGQYYRFDIVDGKLNIQFNEGEPYFEGIDIAKPKVKMTAFKFDNHKIVTELTLNEFMIGEGHYDVRLKLHSRNKKHTMYVPLSVNANKQYRFNIMLEDIKAYLPKEKIWDVFLEVQIGTEVFEVRVGNQRNKYAYTAETSALIHLNNDFYRLTPYFTKDFNNISLYFTAITLTDSISLKLKGKNKIILTGLDRGYVFEEGMASVVLKDDMIMGMLSQTSENEVEILLSKDIKKRDFKNIVKLNTAHMTYSLK
>CP033506.1|AYU98601.1|283466_285155_+|CDP-ribitol-ribitolphosphotransferase
MVKSKIYIDKIYWERVQLFVEGHSENLDLEDSNFVLRNLTETRTMKANDVKIDGNQFVCRFNVAILDNGYYLPEDKYLLVNEQELDYIAQLNPDVINDAYQNLKPEQEEEYNELETQNGKINFLLQTYLKEFRKGGISKKTVYTVTPEISSDVNEFVLDVVVTTPEVKSIYIVRKYKELRKYFRKQSFNTRQFIFKAIFNTTKFFHLKKGNTVLFTSDSRPTMSGNFEYIYNEMLRQNLDKKYDIHTVFKANITDRRGIIDKFRLPYLLGKADYIFVDDFHPLIYTVRFRRSQEVIQVWHAVGAFKTVGFSRTGKKGGPFIDSLNHRSYTKAYVSSETDIPFYAEAFGIKEKNVVPTGVPRTDVLFDEAYATQIKQEMEDELPIIKGKKVILFAPTFRGSGHGTAHYPFFKIDFERLARYCEKNNAVVLFKMHPFVKNRLNIADKHKQYFVDVSDFREVNDILFITDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEPYESFVPGKIVQSFDALMDALDNEDYEGEKVIPFLDKHFKYQDGRSSERLVRNLFGS
>CP033506.1|AYU98611.1|295388_296150_-|SAM-dependent-methyltransferase
MSKEAGHTFLAKLGKTRLRPGGKEATDWLIQQGAFSQDKQVLEVACNMCTTSIYLAHTYGCHIQGVDINKKALEKAQENISAAGLESYIQVQQANAVKLPFDDNQFDIVLNEAMLTMLPIAIKEKALREYYRVLKPGGILLTHDIVIVNESHATHVVKSLSAAINVNVSPQTKLGWLDLYNQAGFNHVHYHTGPMSLMTPKGLIYDEGIVGTIKIINNALKKENRPMFCKMFKTMTKLRKDMNYITFVAKKED
>CP033506.1|AYU98612.1|296400_297159_-|Ribokinase
MQADTTFITKIGTDGVADFILEDFKAAHIDTSYIIKTTEAKTGQAFITVNAEGQNTIYVYGGANMTMTPEDVINAKDAIINADFIVAQLEVPIPAIISAFEIAKAHGVTTVLNPAPAKALPNELLSLIDIIVPNETEAELLSGIKVTNEQSMKDNANYFLSLGIKTVLITLGKQGTYFATKNQSQHIEAYKVNAIDTTAAGDTFIGAFVSRLNKSQDNLADAIDFGNKASSLTVQKHGAQASIPLLEEVNQV
>CP033506.1|AYU98613.1|297309_297714_-|D-ribose-pyranase
MKKSAVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIGVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF
>CP033506.1|AYU98614.1|297728_298397_-|Putative-ribose-uptake-protein-RbsU,-GRP-transporter-family
MGFGQIITFKAFELVGSSRAMPVTTAFQLLGASLWGVFALGNWPGIGHKIIGFTALVVILIGARMTVWSERKEASNAKNLRRAVVLLLIGEFGYWLYSAAPQATSIDGLTAFLPQAMGMVIVAVIYGFMNMKAENPFRNKITWLQIISGFFFAFGALTYLISAQPNMNGLATGFILSQTSVVLATLTGIYFLKQHKTSKEMVITIIGLVLILVAASVTVFIK
>CP033506.1|AYU98615.1|298844_299843_-|Ribose-operon-repressor
MKKVSIKDVAREAGVSVTTVSHILNHNDSRFSATTIKNVHAVSERLGYAPNKHAKQLRGSKIQTIGVILPSLTNPFFSSLMQSIHDHKPSDVDLCFLTSTATDLYDNIKHLIDRGINGLIIAQYISSPDALNNYLKKHHVPYVVLDQNDHQGYTDFVRTNEYQGGQLAAQHLIELGHNNMMIVAPYDMMANMSTRVAGFVDTLRANQLPEPQIVHTELSKRGGLTIVDDIMVQSATAIFAINDELAIGILRGLIEHGISIPKDISLIGYDDIDYAAYVSPPLTTVAQPITDIGKTSLTLLLQRLQHLDKSIDMIELPTTLKIRATTGYHLSN
>CP033506.1|AYU98616.1|300103_300265_+|Transposase,-IS4-family
MAFVFEKSIKKYNEMMWLAQDQTPSYKTINRFRVNPNTDALIESLFIQFAYFS
>CP033506.1|AYU98617.1|300326_301703_-|putative-MFS-type-transporter
MNNTQSSPRSNIIIAIMLSALTYWLFAQSFINIGPLVGQTYQTSPAVLNLSISLTSFATGIFMVAAGDIADKIGQLRMTYMGLIISMFASLLLIISDITALLIIGRILQGLSAAILLPSTVGVLNNQFKGDHLRRAISYLMISTVGGIGLAGVIGGLIATNFGWQTNFIISIVIAFIAILLLKGTPEKVSQHSHRHPFDYKGMSIFAVMIGSFTLLLTQGFEQGWFSTFSIICLSIFSITTLIFIIIERRHEVPFIDFSVLRNRPFIGAFLNNFVLNSGLGVTVVFFIYAQTHLGLSAAQSGLVTLPYAIVAVAMIRLGEKATLRFGGKLMLIIGPLFPVIGITIISMTSLQPSQYIIAVVIGFVICAIGNGLVATPGLTIAIFSMPNEKVGLATGLYKMSGTLGGAFGIALSTTVFSMLQLNYTPSVAATVTFIVSIILMMLGSLSAYMIIPKTVKS
>CP033506.1|AYU98618.1|301936_302929_+|Choloylglycine-hydrolase
MCTGFTIQTLNNQVLLGRTMDYDYPLDGSPAVTPRNYRWTSRTGTTGQTQYGFIGTGTDMEGFIYGDGVNEHGVAISTQYFRGYSSYGSTHKADAMNITQNEIVTWILGYTTSIEDMKQQASQIHVVAVYLNDIGEVPPLHYHVSDATGHSVEVSFKEGEVVIKDNPIGVLTNHPDLNWHYSNLRQYINISPYPATAKLLEGVTIEPLGNEAGTFGLPGGFTSTERFVRMAFMKANIAQNNDKEMDLMNAFYLLDAVNIPIGIVRPHDADNHYTMYQTVINLTTRTLYIKYYGSNEIVALKLTDDLINRKDMTIFKPEKHITIRKLNDNQ
>CP033506.1|AYU98619.1|303254_304205_+|Glycyl-glycine-endopeptidase-LytM-precursor
MKKLTAAAIATMGFATFTMAHQADAAETTNTQQAHTQMSTQSQDVSYGTYYTIDSNGDYHHTPDGNWNQAMFDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATAGDNNDYTASQSQQHINQYGYQSNVGPDASYYSHSNNNQAYNSHDGNGKVNSPNGTSNQNGGSASKATASGHAKDASWLTSRKQLQPYGQYHGGGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIGNQYAVDPTSYLQSR
>CP033506.1|AYU98620.1|304256_304535_-|ABC-transporter,-ATP-binding-protein
MSGGNKRKINILVGLLGQPRILILDEPTVGIDLKSRHDIHQLLNIMKSKCLIILTTHHLDEVEALADDIKLIGQDPFYQHVLEDKQWAYTYY

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Crispr_ID: CP033506_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033506_3

723044-723142

Orphan

Consensus_repeat	Method
AAGAGCCCCTAATTAATAAATTAAAAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033506_3

>merge|CP033506|3|723044-723142|CRISPRCasFinder
AAGAGCCCCTAATTAATAAATTAAAAGGGGACAAAGGAATACAGTTGGATGCTAACGCACCAACTGCATAAGAGCCCCTAATTAATAAATTAAAAGGGG

>CP033506|3|3|723044-723142|CRISPRCasFinder
AAGAGCCCCTAATTAATAAATTAAAAGGGG	ACAAAGGAATACAGTTGGATGCTAACGCACCAACTGCAT
AAGAGCCCCTAATTAATAAATTAAAAGGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP033506.1\|AYU98982.1\|722092_722959_+\|Catabolite-control-protein-E-(CcpE),-LysR-family	unknown	unknown	gnl\|CDD\|223656
CP033506.1\|AYU98973.1\|712221_712839_+\|UPF0111-protein-YkaA,-likely-to-be-a-phosphate-transport-regulator	unknown	unknown	gnl\|CDD\|224310
CP033506.1\|AYU98976.1\|715608_716253_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223742
CP033506.1\|AYU98992.1\|728857_729541_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234750
CP033506.1\|AYU98974.1\|712854_713862_+\|putative-low-affinity-inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
CP033506.1\|AYU98984.1\|724376_724865_+\|putative-membrane-protein	unknown	unknown	gnl\|CDD\|225395
CP033506.1\|AYU98990.1\|727828_728395_-\|Lysine-decarboxylase-family	unknown	unknown	gnl\|CDD\|224527
CP033506.1\|AYU98975.1\|714450_715248_-\|Secretory-antigen-precursor-SsaA	unknown	unknown	gnl\|CDD\|226451
CP033506.1\|AYU98986.1\|725779_726223_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366181
CP033506.1\|AYU98980.1\|720507_720981_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226072
CP033506.1\|AYU98983.1\|723159_724380_+\|Sugar-efflux-transpoter	unknown	unknown	gnl\|CDD\|341024
CP033506.1\|AYU98985.1\|724963_725653_-\|hypothetical-protein	unknown	unknown	unknown
CP033506.1\|AYU98978.1\|719176_719602_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|130944
CP033506.1\|AYU98977.1\|716948_717557_+\|Transcriptional-regulator-of-biofilm-formation-(AraC/XylS-family)	unknown	unknown	gnl\|CDD\|197666
CP033506.1\|AYU98981.1\|721333_721978_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225188
CP033506.1\|AYU98991.1\|728396_728855_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|178882
CP033506.1\|AYU98988.1\|726813_727113_+\|hypothetical-protein	unknown	unknown	unknown
CP033506.1\|AYU98979.1\|719791_720508_+\|Transcriptional-regulatory-protein-YeeN	unknown	unknown	gnl\|CDD\|237084
CP033506.1\|AYU98989.1\|727262_727733_+\|Acetyltransferase,-GNAT-family	unknown	unknown	gnl\|CDD\|379112
CP033506.1\|AYU98987.1\|726289_726454_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP033506.1\|AYU98982.1\|722092_722959_+\|Catabolite-control-protein-E-(CcpE),-LysR-family	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.04787e-39
CP033506.1\|AYU98973.1\|712221_712839_+\|UPF0111-protein-YkaA,-likely-to-be-a-phosphate-transport-regulator	gnl\|CDD\|224310	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism].	3.27806e-54
CP033506.1\|AYU98976.1\|715608_716253_+\|hypothetical-protein	gnl\|CDD\|223742	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only].	1.16188e-32
CP033506.1\|AYU98992.1\|728857_729541_-\|hypothetical-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.000491798
CP033506.1\|AYU98974.1\|712854_713862_+\|putative-low-affinity-inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	5.23541e-104
CP033506.1\|AYU98984.1\|724376_724865_+\|putative-membrane-protein	gnl\|CDD\|225395	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown].	4.76789e-44
CP033506.1\|AYU98990.1\|727828_728395_-\|Lysine-decarboxylase-family	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	1.24037e-61
CP033506.1\|AYU98975.1\|714450_715248_-\|Secretory-antigen-precursor-SsaA	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.44834e-40
CP033506.1\|AYU98986.1\|725779_726223_+\|hypothetical-protein	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.77401e-13
CP033506.1\|AYU98980.1\|720507_720981_+\|hypothetical-protein	gnl\|CDD\|226072	COG3542, COG3542, Uncharacterized conserved protein [Function unknown].	7.22926e-75
CP033506.1\|AYU98983.1\|723159_724380_+\|Sugar-efflux-transpoter	gnl\|CDD\|341024	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters. This family is composed of sugar transporters such as Escherichia coli Sugar efflux transporter SetA, SetB, SetC and other sugar transporters. SetA, SetB, and SetC are involved in the efflux of sugars such as lactose, glucose, IPTG, and substituted glucosides or galactosides. They may be involved in the detoxification of non-metabolizable sugar analogs. The Set family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.30756e-101
CP033506.1\|AYU98978.1\|719176_719602_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	3.46093e-23
CP033506.1\|AYU98977.1\|716948_717557_+\|Transcriptional-regulator-of-biofilm-formation-(AraC/XylS-family)	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	0.00242183
CP033506.1\|AYU98981.1\|721333_721978_+\|hypothetical-protein	gnl\|CDD\|225188	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only].	1.46792e-91
CP033506.1\|AYU98991.1\|728396_728855_-\|hypothetical-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	1.18273e-77
CP033506.1\|AYU98979.1\|719791_720508_+\|Transcriptional-regulatory-protein-YeeN	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	8.8628e-136
CP033506.1\|AYU98989.1\|727262_727733_+\|Acetyltransferase,-GNAT-family	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.3522e-22

>CP033506.1|AYU98982.1|722092_722959_+|Catabolite-control-protein-E-(CcpE),-LysR-family
MKIEDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIENAFGVDIFIRTKKQLITTTEGTMIIEHARDMLKRERLFFDKMQAHIGEVNGTISIGCSSLIGQTLLPEVLSLYNAQFPNVEIQVQVGSTEQIKANHRDYHVMITRGNKVMNLANTHLFNDDHYFIFPKNRRDDVTKLPFIEFQADPIYINQIKQWYNDNLEQDYHATITVDQVATCKEMLISGVGVTILPEIMMKNISKEQFEFEKVEIDNEPLIRSTFMSYDPSMLQLPQVDSFVNLMASFVEQPKA
>CP033506.1|AYU98981.1|721333_721978_+|hypothetical-protein
MKVKYIDKRHWRRLIDREYTEVKVNNNRFKGIIGLVTMKKVRDPLEVTVVGQNIIVADDNYKWLQILPEKKRYSITVMFDNKGNPLEYYFDINIKNITQKGNARTVDLCLDVLALPSGEYELVDEDDLMFALESEQITKKQFHEAYMIAHQIMAELENDFKGFQKKIMYCFNKINAKAQKNHQKPQNKTNIEKSKQIKPKQYNQTKNHQQQKKN
>CP033506.1|AYU98980.1|720507_720981_+|hypothetical-protein
MKSAEQWIDELQLESHPEGGFYRETIREVLKDGRRAPFSSIYFLLTDDNISHFHRIDADEVWYYHAGDSLTIHMINPDGEYTTATLGTDIQNGDVLQYVVPKGTIFASSIEISNTYSLVGCMCQPAFEFKQFELFKQSELITQYPHLKSVIEKYALK
>CP033506.1|AYU98979.1|719791_720508_+|Transcriptional-regulatory-protein-YeeN
MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPNPESNQALRLVLERAKTYSVPNHIIEKAIDKAKGAGDENFDHLRYEGFGPSGSMLIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDHVATFGIEGKSVDEILETLMEQDVDVNDVIDDNGLTIVYAEPDQFAVVQDALRAAGVEEFKVAEFEMLPQTDIELSEADQVTFEKLIDALEDLEDVQNVFHNVDLK
>CP033506.1|AYU98978.1|719176_719602_+|MarR-family-transcriptional-regulator
MAEKFKIIMTEALSLYIWGCNILNTEKLETLLGFYKQYKALSEYIDKKYKLSLNDLAVLDLTMKHCKDEKVLMQSFLKTAMDELDLSRTKLLVSIRRLIEKERLSKVRSSKDERKIYIYLNNDDISKFNALFEDVEQFLNI
>CP033506.1|AYU98977.1|716948_717557_+|Transcriptional-regulator-of-biofilm-formation-(AraC/XylS-family)
MAKSCLHILTNNEYATTRCQDGIVLFWPIDGEIELQKFRKSKIIEDDIYIINHLDVFSIKNNKKTIMLYLSSDWFAELGFTFFNYHYTAKLIKSSYNLKCLLLKLTYRYLDNQPLNDADIRKLQDIIKIIAKEASMDKKIAQNQYRYAYYGDLRDELEYIYQNVNQRLTLKSVADKLFVSKSNLSSQFHLLMGMGFKNILIL
>CP033506.1|AYU98976.1|715608_716253_+|hypothetical-protein
MSQNTNHSYYHQNQHAQSISKVWLYFMYYWIIFGIGCYLGQFLPLSWRQPLSFGLLIIILATLVFERARRFGLIISHIYAVVIGLLSYATFTTYLQNLGPDIFYKNIALAIFAFIAFGIIGYFFVGDASSIGKYLFVTLITLIIASLIGIFLQNPIFYTIITVVSLLLFLLYTLYDFNRLKRGDYSPREMGFNLFINLLNIIKDILYLANMFRR
>CP033506.1|AYU98975.1|714450_715248_-|Secretory-antigen-precursor-SsaA
MKKLAFAITATSGAAAFLTHHDAQASTQHTVQSGESLWSIAQKYNTSVESIKQNNQLDNNLVFPGQVISVGGSDAQNSSNTSPQAGSASSHTVQAGESLNIIASRYGVSVDQLMAANNLRGYLIMPNQTLQIPNGGSGGTTPTATTGSNGNASSFNHQNLYTAGQCTWYVFDRRAQAGSPISTYWSDAKYWAGNAANDGYQVNNTPSVGSIMQSTPGPYGHVAYVERVNGDGSILISEMNYTYGPYNMNYRTIPASEVSSYAFIH
>CP033506.1|AYU98974.1|712854_713862_+|putative-low-affinity-inorganic-phosphate-transporter
MSYIIIVTIAVVIFSLIFDFINGFHDTANAVATAVSTRALTPKTAILMAAVMNFIGALTFTGVAGTITKDIVDPFKLENGLVVVLAAILAAIIWNLATWFYGIPSSSSHALIGSIAGAAIASEGSFGVLHYQGFTKIIIVLIVSPIIAFCVGFLMYSIFKVIFKNANLTRANRNFRFFQIFTAALQSFSHGTNDAQKSMGIITLALIVANVQNDGSVEPQLWVKFACATAMGLGTAIGGWKIIKTVGGNIMKIRPANGAAADLSSALTIFVASSLHFPLSTTHVVSSSILGVGASNRAKGVKWSTAQRMIITWVITLPISALLAGLLFYILNLFF
>CP033506.1|AYU98973.1|712221_712839_+|UPF0111-protein-YkaA,-likely-to-be-a-phosphate-transport-regulator
MFSKKKDKFMVQLEEMVFNLDRAAIEFGKMDFNTHLDLKAYSDNIKTYESHGDELVHQVITDLNQTFITPIEREDILSLCDAIDDVLDAIEETAAMFEMYSIEYTDEYMAEFVDNIQKAVAEMKLAVGLLVDKKLSHMRIHSINIKEFETNCDGILRQSIKHIFNSETDPITLIKIKDIYESMEEIADKCQIVANNFETIIMKNS
>CP033506.1|AYU98983.1|723159_724380_+|Sugar-efflux-transpoter
MDMFAALLQIKNYKLFVANMFLLGMGIAVTVPYLVLFATKDLGMTTNQYGLLLASAAISQFTVNSIIARFSDTHHFNRKIIIILALLMGALGFSIYFFVDTIWLFILLYAIFQGLFAPAMPQLYASARESINVSSSKDRAQFANTVLRSMFSLGFLFGPFIGAQLIGLKGYAGLFGGTISIILFTLVLQVFFYKDLNIKHPISTQQHVEKIAPNMFKDKTLLLPFIAFILLHIGQWMYTMNMPLFVTDYLKENEQHVGYLASLCAGLEVPFMIILGVLSSRLHTRTLLIYGAIFGGLFYFSIGVFKNFYMMLAGQVFLAIFLAVLLGIGISYFQDILPDFPGYASTLFSNAMVIGQLGGNLLGGAMSHWVGLENVFFVSAASIMLGMILIFFTKNQKITKEDVIST
>CP033506.1|AYU98984.1|724376_724865_+|putative-membrane-protein
MTIILWLLIIAAFMLAFVGLIKPIIPSVLVLWVGFLIYQFGFHNQHLSWVFYVSMALLTILILCADFLANKYFVNRFGGSKFGEYAALIGVVIGCFVLPPFGIIIIPFILVFIVELIQGYSFERAVKVSIGSIVAFLTSSIAQAIIMFIMIVWFFIDALLIN
>CP033506.1|AYU98985.1|724963_725653_-|hypothetical-protein
MKSTAQLTKENNVKSLRLSNTDREIFENYMTYMRSDFRVNPHDTELIINRILKQLLSAEQHGLLALDFFNHDPKAHAIKELKAMPNETFKNIFKYIYQHIVLLIGIVSFLKGFLGFFMEKNGSNLYFVSFPFSVVVGFFIVFLFIWFSFKTIQLQCFNNSNWIWIFTYLAIILLIVGFFYVFFIPQSLLAFGPYIQVSNWVFIIFSFIVMPIGLRIERNISKKHSHTFL
>CP033506.1|AYU98986.1|725779_726223_+|hypothetical-protein
MRTLNKDEHNYIKQIANIHETLLSQVESNYKCTKLSIALRYEMICSRLEHTNDKIYIYENEGQLIAFIWGHFSNEKSMVNIELLYVEPQFRKLGIATQLKIALEKWAKTMNAKRISSTIHKNNLPMISLNKDLGYQVSHVKMYKDID
>CP033506.1|AYU98987.1|726289_726454_+|hypothetical-protein
MKKLIISIMAVMLFLTGCGKSQEKATLEKDIDNLQKENKELKDKKKSFNKKKKN
>CP033506.1|AYU98988.1|726813_727113_+|hypothetical-protein
MHEQDFRILEGQDITLPELGRELENITGRTIADSTGEIKRVIAHLPNFESDTDTFVATYRLNHQQDFIDATFTALKSDRARLKEVPVHVELISYISKSK
>CP033506.1|AYU98989.1|727262_727733_+|Acetyltransferase,-GNAT-family
MNANYDVRKYFPSLLSYRRSELDMRTMDAVIKDYGIGLFAVEDKETHQWIGFIGLNYIPETSDYPFKELPLYEIGWRLLPEFWGKGLATEGAKATLKLAEQHQIYDVYSFTAEANKASQRVMEKIGMTVYDHFELPNLSKYHLLKRQVRYYINLRK
>CP033506.1|AYU98990.1|727828_728395_-|Lysine-decarboxylase-family
MKRIAVYCGASKGHDPSYVQKAYDLGKYFAEQGYELVFGAGSIGIMGAIQDGVLDHGGKAIGVMPKMLDEHEITSQRLTELILVDSMHERKNKMAELADAFVMAPGGAGSLEEFFEMYSWAQIGIHEKPIAIYNINGFFNPLQTMIDHMIEEGFIDPKYRALAPLCDTKESLIESILNFKPLGTRSYD
>CP033506.1|AYU98991.1|728396_728855_-|hypothetical-protein
MTHIIIDGDACPVVDSIIDLTTETGIFVTIIRSFSHFSNQLYPPHVSTLYVDDGPDAVDYKIVQLSTKDDIVVTQDYGLASLLVDKVLIVMHHNGKIYNSKNIQQLLDKRYMNAQIRKQGGRHKGPPPFTKQDQKVFEQSLLKVIHRIKELD
>CP033506.1|AYU98992.1|728857_729541_-|hypothetical-protein
MDKKKVIKFMINVLPIVLVPLIVERKRIKQHPDVQKVTDATSKVASKTSAAISNTASDVKEYVGDKKQDFENKRELKKFAREHDPAYIEKKGEKLAKQNRKDADKMNKILQKNIEKRHKEEQKAREKNEIQRIKDMKKSQKYEEKAGLTPNKLDEKTEKKGDKLAEKNRKEIAKMNKKLQKNIEKRHKEEQKRQQEADKARIKSFKKYKDYVAKSASQQNKENNTEA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP033506_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033506_4

775908-775990

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033506_4

>merge|CP033506|4|775908-775990|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>CP033506|4|4|775908-775990|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP033506.1\|AYU99043.1\|787826_788588_+\|Iron-compound-ABC-uptake-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226963
CP033506.1\|AYU99038.1\|781653_782052_+\|Ribonucleotide-reduction-protein-NrdI	unknown	unknown	gnl\|CDD\|224694
CP033506.1\|AYU99034.1\|776437_777355_-\|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)	unknown	unknown	gnl\|CDD\|224513
CP033506.1\|AYU99029.1\|769504_770920_+\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
CP033506.1\|AYU99024.1\|761894_762503_+\|Aminodeoxychorismate-lyase	unknown	unknown	gnl\|CDD\|376449
CP033506.1\|AYU99036.1\|779468_779969_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase	unknown	unknown	gnl\|CDD\|223851
CP033506.1\|AYU99041.1\|785873_786887_+\|Iron-compound-ABC-uptake-transporter-permease-protein	unknown	unknown	gnl\|CDD\|226965
CP033506.1\|AYU99035.1\|777622_779128_-\|Di-tripeptide/cation-symporter-DtpT	unknown	unknown	gnl\|CDD\|225646
CP033506.1\|AYU99025.1\|762862_763573_+\|Allophanate-hydrolase-2-subunit-1	unknown	unknown	gnl\|CDD\|224960
CP033506.1\|AYU99039.1\|782014_784120_+\|Ribonucleotide-reductase-of-class-Ib-(aerobic),-alpha-subunit	unknown	unknown	gnl\|CDD\|236069
CP033506.1\|AYU99027.1\|765034_766975_+\|Lipoteichoic-acid-synthase-LtaS-Type-Ib	unknown	unknown	gnl\|CDD\|224287
CP033506.1\|AYU99030.1\|771614_772118_+\|Glycine-betaine-ABC-transport-system,-ATP-binding-protein-OpuAA	unknown	unknown	gnl\|CDD\|224050
CP033506.1\|AYU99026.1\|763556_764561_+\|Allophanate-hydrolase-2-subunit-2	unknown	unknown	gnl\|CDD\|224895
CP033506.1\|AYU99033.1\|775216_775759_+\|Putative-5'(3')-deoxyribonucleotidase	unknown	unknown	gnl\|CDD\|226895
CP033506.1\|AYU99031.1\|772110_773625_+\|Glycine-betaine-ABC-transport-system,-permease-protein-OpuAB	unknown	unknown	gnl\|CDD\|270328
CP033506.1\|AYU99037.1\|779988_780855_-\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	unknown	unknown	gnl\|CDD\|223769
CP033506.1\|AYU99032.1\|773864_774773_+\|Biosynthetic-Aromatic-amino-acid-aminotransferase-beta	unknown	unknown	gnl\|CDD\|235106
CP033506.1\|AYU99028.1\|767250_769128_+\|Bis-ABC-ATPase-Uup	unknown	unknown	gnl\|CDD\|223562
CP033506.1\|AYU99042.1\|786873_787830_+\|Iron-compound-ABC-uptake-transporter-permease-protein	unknown	unknown	gnl\|CDD\|226964
CP033506.1\|AYU99040.1\|784237_785209_+\|Ribonucleotide-reductase-of-class-Ib-(aerobic),-beta-subunit	unknown	unknown	gnl\|CDD\|275027

Protein	Function_ID	Function_description	E-value
CP033506.1\|AYU99043.1\|787826_788588_+\|Iron-compound-ABC-uptake-transporter-ATP-binding-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	3.31412e-150
CP033506.1\|AYU99038.1\|781653_782052_+\|Ribonucleotide-reduction-protein-NrdI	gnl\|CDD\|224694	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism].	5.52807e-56
CP033506.1\|AYU99034.1\|776437_777355_-\|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	7.55646e-79
CP033506.1\|AYU99029.1\|769504_770920_+\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
CP033506.1\|AYU99024.1\|761894_762503_+\|Aminodeoxychorismate-lyase	gnl\|CDD\|376449	pfam01063, Aminotran_4, Amino-transferase class IV. The D-amino acid transferases (D-AAT) are required by bacteria to catalyze the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity.	1.36865e-38
CP033506.1\|AYU99036.1\|779468_779969_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase	gnl\|CDD\|223851	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only].	7.91282e-79
CP033506.1\|AYU99041.1\|785873_786887_+\|Iron-compound-ABC-uptake-transporter-permease-protein	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.27667e-149
CP033506.1\|AYU99035.1\|777622_779128_-\|Di-tripeptide/cation-symporter-DtpT	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	1.22605e-172
CP033506.1\|AYU99025.1\|762862_763573_+\|Allophanate-hydrolase-2-subunit-1	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	6.58993e-93
CP033506.1\|AYU99039.1\|782014_784120_+\|Ribonucleotide-reductase-of-class-Ib-(aerobic),-alpha-subunit	gnl\|CDD\|236069	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
CP033506.1\|AYU99027.1\|765034_766975_+\|Lipoteichoic-acid-synthase-LtaS-Type-Ib	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	0
CP033506.1\|AYU99030.1\|771614_772118_+\|Glycine-betaine-ABC-transport-system,-ATP-binding-protein-OpuAA	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	6.80884e-45
CP033506.1\|AYU99026.1\|763556_764561_+\|Allophanate-hydrolase-2-subunit-2	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	3.65343e-143
CP033506.1\|AYU99033.1\|775216_775759_+\|Putative-5'(3')-deoxyribonucleotidase	gnl\|CDD\|226895	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism].	1.69885e-107
CP033506.1\|AYU99031.1\|772110_773625_+\|Glycine-betaine-ABC-transport-system,-permease-protein-OpuAB	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.03165e-152
CP033506.1\|AYU99037.1\|779988_780855_-\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.58734e-10
CP033506.1\|AYU99032.1\|773864_774773_+\|Biosynthetic-Aromatic-amino-acid-aminotransferase-beta	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
CP033506.1\|AYU99028.1\|767250_769128_+\|Bis-ABC-ATPase-Uup	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
CP033506.1\|AYU99042.1\|786873_787830_+\|Iron-compound-ABC-uptake-transporter-permease-protein	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	4.81847e-122
CP033506.1\|AYU99040.1\|784237_785209_+\|Ribonucleotide-reductase-of-class-Ib-(aerobic),-beta-subunit	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	2.30551e-164

>CP033506.1|AYU99033.1|775216_775759_+|Putative-5'(3')-deoxyribonucleotidase
MTRKSIAIDMDEVLADTLGEIIDVVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
>CP033506.1|AYU99032.1|773864_774773_+|Biosynthetic-Aromatic-amino-acid-aminotransferase-beta
MKEQLNQLSAYQPGLSPRALKEKYGIEGDLYKLASNENLYGPSPKVKEAISAHLDELYYYPETGSPTLKAAISKHLNVDQSRILFGAGLDEVILMISRAVLTPGDTIVTSEATFGQYYHNAIVESANVIQVPLKDGGFDLEGILKEVNEDTSLVWLCNPNNPTGTYFNHESLDSFLSQVPLHVPVIIDEAYFEFVTAEDYPDTLALQQKYDNAFLLRTFSKAYGLAGLRVGYVVASEHAIEKWNIIRPPFNVTRISEYAAVAALEDQQYLKEVTHKIVLNAKDFINYLKVSISCQVKRILYL
>CP033506.1|AYU99031.1|772110_773625_+|Glycine-betaine-ABC-transport-system,-permease-protein-OpuAB
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK
>CP033506.1|AYU99030.1|771614_772118_+|Glycine-betaine-ABC-transport-system,-ATP-binding-protein-OpuAA
MDEPFSALDPISREKLQDDLIELQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHLEDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQLLSESERVIVMQEDSVGQYVIDRKDIFKYLSQKKEVAQHD
>CP033506.1|AYU99029.1|769504_770920_+|ATP-dependent-DNA-helicase-RecQ
MLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDKSYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEILMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPASKQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV
>CP033506.1|AYU99028.1|767250_769128_+|Bis-ABC-ATPase-Uup
MEAYKIEHLNKSYADKIIFDNLDLSISEGEKIGLVGINGTGKSTLLKVIGGIDDDFTANVMHPNQYRIRYSSQKQDLNEDMTVFDAVLSSDTTTLRIIKQYEQTVQAYADDQSDKLFKRMMDAQDAMDQHDAWDYNAEIKTILSKLGIHDTTKYIKELSGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESISWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELNRGKLASYPGNYESYIEMRAEREVTLQKQQQKQRALYKEELAWMRAGAKARTTKQQARINRFNDLENEVNQQYKDDKGELNLAYSRLGKQVFELEDLSKAINDKVLFEHLTEIIQKGERIGVVGPNGAGKTTLLNILSGEDQQFEGKLKTGQTVKVAYFKQTDETLDRDIRMIDYLREESEIAKEKDGTSVSITQLLERFLFPSATHGKKVYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIHTFGGTVITVSHDRYFLNKVAQSYWFIHDGQMEKIIGTFEDYESYKKSLDKNKSTLKQQSKSSTTVRKKNGLSYKEKLEYEQLMKRIEQAEVRMEEIDVLMIEASADYGKIKELNEEKEQLEIQYDLDITRWSELEEIKEQQ
>CP033506.1|AYU99027.1|765034_766975_+|Lipoteichoic-acid-synthase-LtaS-Type-Ib
MSSQKKKISLFAFFLLTVITITLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLVALVLSVFLFFKGKKAFWFMFIGGFLLTFLLYANVVYFRFFSDFLTFSTLNQVGNVESMGGAVSASFKWYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFVPVVMAASVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALASEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPKANSKK
>CP033506.1|AYU99026.1|763556_764561_+|Allophanate-hydrolase-2-subunit-2
MSIIIEKSGLFSSFQDFGRRGYEHDGVIPCGALDTLAHEIANRLVANDKNEATLEMTNKMATIRFTEPTLIALAGGNVKAYTEHMTISPYKLYLLDKGDVLKFRETSYTSRVYLAVGGGFELDAWLGSNSTDFNVKIGGFKGRTLQDGDEIKLKRDYTARHHKLFENLAHTKQTDWGIDGYALSFNYMSDVFHVVKNKGTEDFKEDAIQRFVKHDYKVTSKANRIGMMLEGEKIKAFYEDMPPYQTVKKGTIQIKRDGTPIILLNDHYTLGSYPQIGTIASYHLTKLAQKPQGSRLKFQFIDILTAEKNLVKYSNWLNQLFHGIEYRMQLEMMK
>CP033506.1|AYU99025.1|762862_763573_+|Allophanate-hydrolase-2-subunit-1
MKIYSQGDQAIVVAIEKEVSKSLTEDLLTLRSYLIEQNYPFIIEIVPSESDMMIVYDARDMIKHHNIQSPFLYMKALIESIHLNIKHDFNQQDLIEIPIVYGSKYGPDLESLLKHYKIKLETFIELHSKAQYFVSIMGYSPGFPYLTGLNKKLYINHTSKQKKFIPAGSVVLEGKKCGIVTTDTINDWLVIGYTPLSLFNPKESDFARLKLGDNIKFRPINENELEVGAFKDVNHN
>CP033506.1|AYU99024.1|761894_762503_+|Aminodeoxychorismate-lyase
MQLFETMKIDNGHIPRLTYHTNRIKCSSERLNFKFDEHAWRNELNDVTTKYHSGQYRLKIVLNVESEFETIVSPLPEKSSFTAKFQVLPKVVNPTFINNKTTERKHLAHNHETDLILLTSEDGKVLEFDIGNIVIEEDGKWYTPSYKDDFLKGCMRDYLIDSDKLVEKDFNKNELIYKYHNNEIRLFLINSLREVADVHLCL
>CP033506.1|AYU99034.1|776437_777355_-|Transcription-regulator-(contains-diacylglycerol-kinase-catalytic-domain)
MENKYTHGVLFYHEHSGLKNINQGIGEVTTALSSICKHLSIQLSENEGDIIKYCQEIKTKNYAKDVDILFILGGDGTVNELINGVMSHDLQLPIGILPGGTFNDFTKTLNIAPNHKQASEQMISAQVGTYDVIKINNQYALNFVGLGLIVQNAENVQDGSKDIFGKLSYIGSTVKTLLNPTQFNYQLSIDDKTYSGETTMILTANGPFIGGSRIPLTDLSPQDGELNTFIFNEQSFSILNDIFKKRDSMNWNEITQGIEHIPGKKISLTTDPAMKVDIDGEISLETPIDIEVIPNAIQLLTVNDL
>CP033506.1|AYU99035.1|777622_779128_-|Di-tripeptide/cation-symporter-DtpT
MTQQNSHGNQIQDIPQTGFFGHPRGLGVLFFVEFWERFSYYGMRALLIFYMYFAVTDNGLGIDKTTAMSIMSVYGSLIYMTSIPGGWIADRITGTRGATLLGAVFIIIGHICLSLPFALIGLFTSMFFIIIGSGLMKPNISNIVGRLYPENDRRMDAGFVIFYMSVNMGALLSPIILQHFVNVKNFHGGFLIAAVGMALGLVWYVLFNRKNLGSVGMKPTNPLTPAEKKKYGLIIGSVVLAIVLIIVIGALTNSLSFNLVSNTVLVLGIALPIIYFTLIIRSKDVTDTERSRVKAFIPLFILGMVFWAIQEQGSNVLNIYGIEHSDMKLNLFGWKTNFGEAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTFLAGASYILIGIVGYASGSSNFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKAFNAQMMSIWYLTNASAQAINGTLVKLIEPLGQTNYFIFLGVVAIIVTTIVLAFSPLIIKAMKGIR
>CP033506.1|AYU99036.1|779468_779969_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase
MAHGRQQDELQDITLLGNQDNTYNFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPNSKYEKMAEHRLMNHDLYPEKIDNR
>CP033506.1|AYU99037.1|779988_780855_-|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily
MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVAMFIPLFFIYKYPQPMFGRLSSQPLLITRSTLGLIGVLLNIYAIDHMVLSDADSLMKLNPFWTILLSIVFLHEKVRKYQITAMIIAILGMLLIVKPEFSSSMIPSLAGLFSGIFAASAYTCVRALSTREAPYTIVFYFSLFSVIVLIPFTAYTYEPMSQMQILYLLGAGLAAAVGQIGVTLAYSFAAAKDISIFTYASIIFTAILGFILFGESPDFYATLGYVVIIGASYYMFEKARRDAKIIKK
>CP033506.1|AYU99038.1|781653_782052_+|Ribonucleotide-reduction-protein-NrdI
MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
>CP033506.1|AYU99039.1|782014_784120_+|Ribonucleotide-reductase-of-class-Ib-(aerobic),-alpha-subunit
MKTMEEKKYNHIELNNEVTKRREDGFFSLEKDQEALVAYLEEVKDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALKTNDKSQYLEDYNQHVAIVALYLANGNKAQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMVANPNVEKKKKNAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNKLLSVEECTSCSI
>CP033506.1|AYU99040.1|784237_785209_+|Ribonucleotide-reductase-of-class-Ib-(aerobic),-beta-subunit
MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVKGDGYVLALNVEALQDDDFVFDNK
>CP033506.1|AYU99041.1|785873_786887_+|Iron-compound-ABC-uptake-transporter-permease-protein
MIMIIINLKGEKFVMKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVSPTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLRTNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVVTVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNYAQQ
>CP033506.1|AYU99042.1|786873_787830_+|Iron-compound-ABC-uptake-transporter-permease-protein
MRNNNKKIMLLIAVTLLISMLYLFVGIDFEIFEYQFSSRLRKFILIILVGAAIATSVVIFQAITNNRLLTPSIMGLDAVYLFIKVLPVFLFGIQSVWVTNVYLNFILTLITMVLFALILFQGIFKIGHFSIYFILLIGVLLGTFFRSITGFIQLIMDPESFLAIQSSMFANFNASNSNLVTFSAVLLVILLVITILLLPYLDVLLLGRAEAINLGISYEKLTRILLVIVSVLVSVSTALVGPITFLGLLTVNLAHELMKTYEHKYILIATICLSWISLFSAQWVVENVFEATTEMSILIDLIGGSYFIYLLVRRRNAQ
>CP033506.1|AYU99043.1|787826_788588_+|Iron-compound-ABC-uptake-transporter-ATP-binding-protein
MIQVENLTKTINNQMILEDISIDIEKGKLTSLIGPNGAGKSTLLSAICRLIRFENGEVKIDGQLMSDYKNNDLSKKISILKQTNHTEMNITVEQLVNFGRFPYSKGRLTKEDHDIVNDALDLLQLQDIRNRNIKSLSGGQRQRAYIAMTIAQDTEYILLDEPLNNLDMKHAVQIMQTLKMLAHKMNKAIVIVLHDINFASCYSDQIVALKNGQLVKSDLKDNVIQSSVLSDLYDMNIQIEHIRNQRICLYFKD

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Crispr_ID: CP033506_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033506_5

822753-822835

Unclear

Consensus_repeat	Method
CCAACTTGCATTGTCTGTAGAAATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033506_5

>merge|CP033506|5|822753-822835|CRISPRCasFinder
CCAACTTGCATTGTCTGTAGAAATTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGTCTGTAGAAATT

>CP033506|5|5|822753-822835|CRISPRCasFinder
CCAACTTGCATTGTCTGTAGAAATT	CTTTTCGAAATTCTCTGTGTTGGGGCCCACACC
CCAACTTGCATTGTCTGTAGAAATT

Protein	Signature genes	Signature genes Name	Protein_function
CP033506.1\|AYU99072.1\|821399_822335_+\|Thioredoxin-reductase	unknown	unknown	gnl\|CDD\|273540
CP033506.1\|AYU99074.1\|824007_825003_+\|LPPG:FO-2-phospho-L-lactate-transferase-like,-CofD-like	unknown	unknown	gnl\|CDD\|211689
CP033506.1\|AYU99082.1\|834684_836202_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
CP033506.1\|AYU99071.1\|819893_821333_+\|TPR-domain-protein	unknown	unknown	gnl\|CDD\|276808
CP033506.1\|AYU99063.1\|809998_810391_+\|LysM-domain-protein	unknown	unknown	gnl\|CDD\|212030
CP033506.1\|AYU99073.1\|823174_824011_+\|RNase-adapter-protein-RapZ	unknown	unknown	gnl\|CDD\|224574
CP033506.1\|AYU99081.1\|833920_834682_+\|Triosephosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
CP033506.1\|AYU99079.1\|831460_832471_+\|NAD-dependent-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
CP033506.1\|AYU99068.1\|817616_818549_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
CP033506.1\|AYU99065.1\|811655_811892_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227234
CP033506.1\|AYU99064.1\|811008_811659_+\|Nucleotidase-YfbR,-HD-superfamily	unknown	unknown	gnl\|CDD\|378993
CP033506.1\|AYU99078.1\|830394_831408_+\|central-glycolytic-regulator	unknown	unknown	gnl\|CDD\|225263
CP033506.1\|AYU99067.1\|814150_816997_+\|Excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|234734
CP033506.1\|AYU99076.1\|826630_827218_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
CP033506.1\|AYU99070.1\|819400_819886_+\|Putative-acetyltransferase-YvoF	unknown	unknown	gnl\|CDD\|100053
CP033506.1\|AYU99077.1\|827460_828363_-\|Cell-division-inhibitor	unknown	unknown	gnl\|CDD\|224015
CP033506.1\|AYU99069.1\|818554_819049_+\|Prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
CP033506.1\|AYU99080.1\|832609_833800_+\|Phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
CP033506.1\|AYU99066.1\|812159_814052_+\|Excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
CP033506.1\|AYU99075.1\|825113_826058_+\|Sporulation-transcription-regulator-WhiA	unknown	unknown	gnl\|CDD\|273194

Protein	Function_ID	Function_description	E-value
CP033506.1\|AYU99072.1\|821399_822335_+\|Thioredoxin-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
CP033506.1\|AYU99074.1\|824007_825003_+\|LPPG:FO-2-phospho-L-lactate-transferase-like,-CofD-like	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
CP033506.1\|AYU99082.1\|834684_836202_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
CP033506.1\|AYU99071.1\|819893_821333_+\|TPR-domain-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.14043e-06
CP033506.1\|AYU99063.1\|809998_810391_+\|LysM-domain-protein	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	2.59021e-11
CP033506.1\|AYU99073.1\|823174_824011_+\|RNase-adapter-protein-RapZ	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	9.18786e-160
CP033506.1\|AYU99081.1\|833920_834682_+\|Triosephosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.48635e-146
CP033506.1\|AYU99079.1\|831460_832471_+\|NAD-dependent-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0
CP033506.1\|AYU99068.1\|817616_818549_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
CP033506.1\|AYU99065.1\|811655_811892_+\|hypothetical-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
CP033506.1\|AYU99064.1\|811008_811659_+\|Nucleotidase-YfbR,-HD-superfamily	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
CP033506.1\|AYU99078.1\|830394_831408_+\|central-glycolytic-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.39665e-92
CP033506.1\|AYU99067.1\|814150_816997_+\|Excinuclease-ABC-subunit-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP033506.1\|AYU99076.1\|826630_827218_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP033506.1\|AYU99070.1\|819400_819886_+\|Putative-acetyltransferase-YvoF	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.85181e-30
CP033506.1\|AYU99077.1\|827460_828363_-\|Cell-division-inhibitor	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	6.73087e-155
CP033506.1\|AYU99069.1\|818554_819049_+\|Prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	1.98257e-67
CP033506.1\|AYU99080.1\|832609_833800_+\|Phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
CP033506.1\|AYU99066.1\|812159_814052_+\|Excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP033506.1\|AYU99075.1\|825113_826058_+\|Sporulation-transcription-regulator-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153

>CP033506.1|AYU99072.1|821399_822335_+|Thioredoxin-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP033506.1|AYU99071.1|819893_821333_+|TPR-domain-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP033506.1|AYU99070.1|819400_819886_+|Putative-acetyltransferase-YvoF
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP033506.1|AYU99069.1|818554_819049_+|Prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYVENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLENYICQIL
>CP033506.1|AYU99068.1|817616_818549_+|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>CP033506.1|AYU99067.1|814150_816997_+|Excinuclease-ABC-subunit-A
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>CP033506.1|AYU99066.1|812159_814052_+|Excinuclease-ABC-subunit-B
MVEHYPFKIHSDFEPQGDQPQAIEEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQIRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKNVKRQSTI
>CP033506.1|AYU99065.1|811655_811892_+|hypothetical-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>CP033506.1|AYU99064.1|811008_811659_+|Nucleotidase-YfbR,-HD-superfamily
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>CP033506.1|AYU99063.1|809998_810391_+|LysM-domain-protein
MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKTPVRKASQAKKVVKQPVQQASKK
>CP033506.1|AYU99073.1|823174_824011_+|RNase-adapter-protein-RapZ
MVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP033506.1|AYU99074.1|824007_825003_+|LPPG:FO-2-phospho-L-lactate-transferase-like,-CofD-like
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP033506.1|AYU99075.1|825113_826058_+|Sporulation-transcription-regulator-WhiA
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP033506.1|AYU99076.1|826630_827218_+|ATP-dependent-Clp-protease-proteolytic-subunit
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>CP033506.1|AYU99077.1|827460_828363_-|Cell-division-inhibitor
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGMILSNEGGALQTMKLPYKYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE
>CP033506.1|AYU99078.1|830394_831408_+|central-glycolytic-regulator
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIGDALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
>CP033506.1|AYU99079.1|831460_832471_+|NAD-dependent-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
>CP033506.1|AYU99080.1|832609_833800_+|Phosphoglycerate-kinase
MAKKIVSDLNLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK
>CP033506.1|AYU99081.1|833920_834682_+|Triosephosphate-isomerase
MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTVVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSENQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGAK
>CP033506.1|AYU99082.1|834684_836202_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MAKKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH

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Crispr_ID: CP033506_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033506_6

865869-865950

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033506_6

>merge|CP033506|6|865869-865950|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGAGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>CP033506|6|6|865869-865950|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP033506.1\|AYU99121.1\|872640_873072_-\|Exotoxin,-phage-associated	unknown	unknown	unknown
CP033506.1\|AYU99119.1\|870587_871505_-\|Integrase,-superantigen-encoding-pathogenicity-islands-SaPI	unknown	unknown	gnl\|CDD\|271189
CP033506.1\|AYU99113.1\|864886_865765_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226395
CP033506.1\|AYU99109.1\|862662_863202_+\|Putative-nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380312
CP033506.1\|AYU99107.1\|861293_861716_-\|Organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
CP033506.1\|AYU99115.1\|867050_867347_+\|Thioredoxin	unknown	unknown	gnl\|CDD\|239245
CP033506.1\|AYU99111.1\|863815_864172_+\|a-glutathione-dependent-thiol-reductase	unknown	unknown	gnl\|CDD\|239334
CP033506.1\|AYU99114.1\|866668_867058_+\|Toprim-domain-protein	unknown	unknown	gnl\|CDD\|224572
CP033506.1\|AYU99120.1\|871592_872321_-\|Exotoxin,-phage-associated	unknown	unknown	gnl\|CDD\|280949
CP033506.1\|AYU99110.1\|863351_863672_-\|Thioredoxin-like-protein-YdbP	unknown	unknown	gnl\|CDD\|239245
CP033506.1\|AYU99112.1\|864329_864698_+\|Glycine-cleavage-system-H-protein	unknown	unknown	gnl\|CDD\|234918
CP033506.1\|AYU99116.1\|867743_868304_+\|Methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
CP033506.1\|AYU99104.1\|858974_859556_+\|Phosphoglycerate-mutase-family-protein	unknown	unknown	gnl\|CDD\|223483
CP033506.1\|AYU99122.1\|873246_873981_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238045
CP033506.1\|AYU99105.1\|859628_860246_-\|Putative-amino-acid-transporter-YisU,-LysE-family	unknown	unknown	gnl\|CDD\|224198
CP033506.1\|AYU99106.1\|860400_860895_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372596
CP033506.1\|AYU99123.1\|875485_876448_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214926
CP033506.1\|AYU99117.1\|868611_869388_+\|Methionine-ABC-transporter-permease-protein	unknown	unknown	gnl\|CDD\|224922
CP033506.1\|AYU99108.1\|861863_862580_+\|3-dehydroquinate-dehydratase-I	unknown	unknown	gnl\|CDD\|184156
CP033506.1\|AYU99118.1\|869323_869959_+\|Methionine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381

Protein	Function_ID	Function_description	E-value
CP033506.1\|AYU99119.1\|870587_871505_-\|Integrase,-superantigen-encoding-pathogenicity-islands-SaPI	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	9.96788e-18
CP033506.1\|AYU99113.1\|864886_865765_+\|hypothetical-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	1.72543e-74
CP033506.1\|AYU99109.1\|862662_863202_+\|Putative-nitroreductase-family-protein	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
CP033506.1\|AYU99107.1\|861293_861716_-\|Organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
CP033506.1\|AYU99115.1\|867050_867347_+\|Thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
CP033506.1\|AYU99111.1\|863815_864172_+\|a-glutathione-dependent-thiol-reductase	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
CP033506.1\|AYU99114.1\|866668_867058_+\|Toprim-domain-protein	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	6.789e-37
CP033506.1\|AYU99120.1\|871592_872321_-\|Exotoxin,-phage-associated	gnl\|CDD\|280949	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain.	2.55336e-24
CP033506.1\|AYU99110.1\|863351_863672_-\|Thioredoxin-like-protein-YdbP	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.70086e-24
CP033506.1\|AYU99112.1\|864329_864698_+\|Glycine-cleavage-system-H-protein	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	9.83557e-68
CP033506.1\|AYU99116.1\|867743_868304_+\|Methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	6.21633e-107
CP033506.1\|AYU99104.1\|858974_859556_+\|Phosphoglycerate-mutase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	2.29633e-48
CP033506.1\|AYU99122.1\|873246_873981_-\|hypothetical-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.1934e-12
CP033506.1\|AYU99105.1\|859628_860246_-\|Putative-amino-acid-transporter-YisU,-LysE-family	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	1.40612e-61
CP033506.1\|AYU99106.1\|860400_860895_-\|hypothetical-protein	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
CP033506.1\|AYU99123.1\|875485_876448_+\|hypothetical-protein	gnl\|CDD\|214926	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1). This alpha helical domain is found at the C terminal of primases.	2.60797e-14
CP033506.1\|AYU99117.1\|868611_869388_+\|Methionine-ABC-transporter-permease-protein	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	3.34514e-94
CP033506.1\|AYU99108.1\|861863_862580_+\|3-dehydroquinate-dehydratase-I	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	5.95463e-148
CP033506.1\|AYU99118.1\|869323_869959_+\|Methionine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	3.6076e-73

>CP033506.1|AYU99113.1|864886_865765_+|hypothetical-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMKEETLNQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLDNLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQEHLKSLDADNEDIPFSGAFSIKFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>CP033506.1|AYU99112.1|864329_864698_+|Glycine-cleavage-system-H-protein
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSK
>CP033506.1|AYU99111.1|863815_864172_+|a-glutathione-dependent-thiol-reductase
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>CP033506.1|AYU99110.1|863351_863672_-|Thioredoxin-like-protein-YdbP
MQSIKSNESFKSVINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>CP033506.1|AYU99109.1|862662_863202_+|Putative-nitroreductase-family-protein
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>CP033506.1|AYU99108.1|861863_862580_+|3-dehydroquinate-dehydratase-I
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDLYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>CP033506.1|AYU99107.1|861293_861716_-|Organic-hydroperoxide-resistance-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>CP033506.1|AYU99106.1|860400_860895_-|hypothetical-protein
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>CP033506.1|AYU99105.1|859628_860246_-|Putative-amino-acid-transporter-YisU,-LysE-family
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGEAQIMSPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLIF
>CP033506.1|AYU99104.1|858974_859556_+|Phosphoglycerate-mutase-family-protein
MAKTLYLMRHGQTLFNFKGLIQGFGDSPLTELGIAQAQKARSYYETKGINFDLYASSTQERASDTLENVAPNQSYQRFKGLKEWHFGLFEGESVYLFDNLYKPEDLFGDRIVPFKGEARQQVEERIVKTLHDIMSQTKNNALVVSHGTIMGVFLRYCLKLDEALKHNIGNCNILKFEYDNGTFKFVELIDPNL
>CP033506.1|AYU99114.1|866668_867058_+|Toprim-domain-protein
MMAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>CP033506.1|AYU99115.1|867050_867347_+|Thioredoxin
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>CP033506.1|AYU99116.1|867743_868304_+|Methionine-ABC-transporter-ATP-binding-protein
MFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEQGPVTQVLKIRNTL
>CP033506.1|AYU99117.1|868611_869388_+|Methionine-ABC-transporter-permease-protein
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGIGLQINLINDKLGVSFYEKIIWSYFSINICSCISSLR
>CP033506.1|AYU99118.1|869323_869959_+|Methionine-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKILSLIINNQQNSYLKFIKMKTLMLLSLIRTLQSNKN
>CP033506.1|AYU99119.1|870587_871505_-|Integrase,-superantigen-encoding-pathogenicity-islands-SaPI
MWFEKFKNKNKETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHAASDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKRIQME
>CP033506.1|AYU99120.1|871592_872321_-|Exotoxin,-phage-associated
MKKLISILLINIIILGVSNNASAQGDIGIDNLRNFYTKKDFVDLKDVKDNDTPIANQLQFSNESYDLISESKDFNKFSNFKGKKLDVFGISYNGQCNTKYIYGGVTATNEYLDKSRNIPINIWINGNHKTISTNKVSTNKKLVTAQEIDVKLRKYLQEEYNIYGHNGTKKGEEYGHKSKFYSGFNIGKVTFHLNNNDTFSYGLFYTGDDGLPKSFLKIYEDNKTVESEKFHLDVDISYKETI
>CP033506.1|AYU99121.1|872640_873072_-|Exotoxin,-phage-associated
MNKIFRILTVSLFFFTFLIKNNLAYADVGVINLRNFYANYEPEKLQGVSSGNFSTSHQLEYIDGKYTLYSQFHNEYEAKRLKDHKVDIFGISYSGLCNTKYMYGGITLANQNLDKPRNIPINLWVNGKQNTISTDKVSTQKKR
>CP033506.1|AYU99122.1|873246_873981_-|hypothetical-protein
MTFGEILKKERVSWKLSVKELSTLSGVSQTYISKLENGKRNFPSLETIFNLLIGFKTHIEYKMGSESPFYEINNSYLDEILIMFINSSNSTISDRDPNELITQFNEYYDVTIKKKQNENSKIESDIFSNKIKLVKGTTKKEVIEKPYFDLNWLLTQNEYEVFFDRSFLLDNNFLNKKHFTEKDMYYYNVLNDNDLKTIKDLIVVFLLNKYNYIKNKDDFFNIFTNSEDDKTKRDALYKILYETD
>CP033506.1|AYU99123.1|875485_876448_+|hypothetical-protein
MPIEANYKYARGVAVYGDIKNGANDHGEIIKKHRNDVNVVYRDVIVLDYDEINDLKQLHEAISSALSNVAWFWHTSFSHTTEQARIRLYIPLNERISADDYRKYTKVLANKIGHKVDEGSYQPSRCFALPVIQKGHIFIKRVNDCPIMNVDMLEQWSKEYEQSNDSPNIKGYTRHGSAYWRDIAFGVSEGERNSTLASITGYLLRRYVDPNLVYGLVSAWASVCKPPINQSEVNNTFKSILKKIVKTVRNGGFCLEDVTNEEVFEMIDSRTGVLNANDWKSQLRRSATTQALKKTTTNAEIILCNDESLKGLVQYDALKK

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Crispr_ID: CP033506_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033506_7

1148553-1148739

Orphan

Consensus_repeat	Method
GGCGGGGCCCCAACATAGA	CRT

3 spacers

The CRISPR arrays of CP033506_7

>merge|CP033506|7|1148553-1148739|CRT
GGCGGGGCCCCAACATAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGTGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGA

>CP033506|7|1|1148553-1148739|CRT
GGCGGGGCCCCAACATAGA	GAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTG
GGGTGGGCCCCAACACAGA	AGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTT
GGCGGGGCCCCAACATAGT	GAAATTGGATTCCCAATTTCTACAGACAATGCAAGTT
GGCGGGGCCCCAACATAGA

Protein	Signature genes	Signature genes Name	Protein_function
CP033506.1\|AYU99361.1\|1148199_1148397_+\|hypothetical-protein	unknown	unknown	unknown
CP033506.1\|AYU99355.1\|1142568_1143075_+\|hypothetical-protein	unknown	unknown	unknown
CP033506.1\|AYU99359.1\|1145734_1145968_-\|hypothetical-protein	unknown	unknown	unknown
CP033506.1\|AYU99356.1\|1143333_1143831_+\|Extracellular-fibrinogen-binding-protein-Efb	unknown	unknown	gnl\|CDD\|289007
CP033506.1\|AYU99353.1\|1139807_1140311_+\|phosphoesterase	unknown	unknown	gnl\|CDD\|223695
CP033506.1\|AYU99360.1\|1146444_1147230_-\|Cytolytic-pore-forming-protein---Alpha-hemolysin	unknown	unknown	gnl\|CDD\|273388
CP033506.1\|AYU99358.1\|1144927_1145113_-\|hypothetical-protein	unknown	unknown	unknown
CP033506.1\|AYU99363.1\|1151917_1152919_+\|Ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235269
CP033506.1\|AYU99368.1\|1158736_1158871_+\|antibacterial-protein	unknown	unknown	gnl\|CDD\|368464
CP033506.1\|AYU99364.1\|1152938_1153874_+\|Carbamate-kinase	unknown	unknown	gnl\|CDD\|237071
CP033506.1\|AYU99362.1\|1150754_1151480_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|171855
CP033506.1\|AYU99369.1\|1158927_1159062_+\|antibacterial-protein	unknown	unknown	gnl\|CDD\|368464
CP033506.1\|AYU99370.1\|1159194_1159881_+\|Pyrimidine-5'-nucleotidase-YjjG	unknown	unknown	gnl\|CDD\|162788
CP033506.1\|AYU99354.1\|1141496_1141898_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|171849
CP033506.1\|AYU99367.1\|1157636_1157825_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225382
CP033506.1\|AYU99357.1\|1143981_1144332_+\|fibrinogen-binding-prophage-protein	unknown	unknown	gnl\|CDD\|371594
CP033506.1\|AYU99365.1\|1154045_1155602_+\|Arginine/ornithine-antiporter-ArcD	unknown	unknown	gnl\|CDD\|224207
CP033506.1\|AYU99371.1\|1162377_1162809_+\|Cell-division-protein-MraZ	unknown	unknown	gnl\|CDD\|224912
CP033506.1\|AYU99352.1\|1139227_1139815_+\|Nucleoside-5-triphosphatase-RdgB-(dHAPTP,-dITP,-XTP-specific)	unknown	unknown	gnl\|CDD\|184835
CP033506.1\|AYU99366.1\|1155909_1156137_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP033506.1\|AYU99356.1\|1143333_1143831_+\|Extracellular-fibrinogen-binding-protein-Efb	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	2.84801e-27
CP033506.1\|AYU99360.1\|1146444_1147230_-\|Cytolytic-pore-forming-protein---Alpha-hemolysin	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	7.85204e-116
CP033506.1\|AYU99353.1\|1139807_1140311_+\|phosphoesterase	gnl\|CDD\|223695	COG0622, COG0622, Predicted phosphoesterase [General function prediction only].	9.91823e-44
CP033506.1\|AYU99363.1\|1151917_1152919_+\|Ornithine-carbamoyltransferase	gnl\|CDD\|235269	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.	0
CP033506.1\|AYU99370.1\|1159194_1159881_+\|Pyrimidine-5'-nucleotidase-YjjG	gnl\|CDD\|162788	TIGR02254, hydrolase_haloacid_dehalogenase-like_family, noncanonical pyrimidine nucleotidase, YjjG family. This HAD superfamily includes including YjjG from E. coli and YfnB from B. subtilis. YjjG has been shown to act as a house-cleaning enzyme, cleaving nucleotides with non-canonical nucleotide bases. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).	9.49611e-57
CP033506.1\|AYU99364.1\|1152938_1153874_+\|Carbamate-kinase	gnl\|CDD\|237071	PRK12353, PRK12353, putative amino acid kinase; Reviewed.	0
CP033506.1\|AYU99362.1\|1150754_1151480_-\|hypothetical-protein	gnl\|CDD\|171855	PRK13043, PRK13043, superantigen-like protein; Reviewed.	8.18566e-161
CP033506.1\|AYU99369.1\|1158927_1159062_+\|antibacterial-protein	gnl\|CDD\|368464	pfam05480, Staph_haemo, Staphylococcus haemolytic protein. This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.	4.87929e-13
CP033506.1\|AYU99354.1\|1141496_1141898_-\|hypothetical-protein	gnl\|CDD\|171849	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed.	5.2726e-76
CP033506.1\|AYU99365.1\|1154045_1155602_+\|Arginine/ornithine-antiporter-ArcD	gnl\|CDD\|224207	COG1288, COG1288, Predicted membrane protein [Function unknown].	0
CP033506.1\|AYU99357.1\|1143981_1144332_+\|fibrinogen-binding-prophage-protein	gnl\|CDD\|371594	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN. SCIN is released by Staphylococcus aureus to counteract the host immune defense. The protein binds to and inhibits C3 convertases on the bacterial surface, reducing phagocytosis and blocking downstream effector functions by C3b deposition on its surface. An 18 residue stretch 31-48 is crucial for SCIN activity.	8.46865e-41
CP033506.1\|AYU99367.1\|1157636_1157825_+\|hypothetical-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	0.00787195
CP033506.1\|AYU99371.1\|1162377_1162809_+\|Cell-division-protein-MraZ	gnl\|CDD\|224912	COG2001, COG2001, Uncharacterized protein conserved in bacteria [Function unknown].	9.06572e-74
CP033506.1\|AYU99352.1\|1139227_1139815_+\|Nucleoside-5-triphosphatase-RdgB-(dHAPTP,-dITP,-XTP-specific)	gnl\|CDD\|184835	PRK14822, PRK14822, XTP/dITP diphosphatase.	3.93083e-114
CP033506.1\|AYU99368.1\|1158736_1158871_+\|antibacterial-protein	gnl\|CDD\|368464	pfam05480, Staph_haemo, Staphylococcus haemolytic protein. This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.	6.35158e-13

>CP033506.1|AYU99361.1|1148199_1148397_+|hypothetical-protein
MTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYVSLKEH
>CP033506.1|AYU99360.1|1146444_1147230_-|Cytolytic-pore-forming-protein---Alpha-hemolysin
MKYAQISDSIQEISMIQKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWTDRSSERYKIDWEKEEMTN
>CP033506.1|AYU99359.1|1145734_1145968_-|hypothetical-protein
MVFNDWEINVVYSGEHEVVTNEKSLFVIDEFYDVAIAIYYLDGKLKVAHVNYGSDFTIDVANKVFELNIQNPNVDEH
>CP033506.1|AYU99358.1|1144927_1145113_-|hypothetical-protein
MNKHINKKASKLLEDYKKVQQRKSEETDKGCLKSVIMLIVLFFLIIFGIVACSTNVNFFFQ
>CP033506.1|AYU99357.1|1143981_1144332_+|fibrinogen-binding-prophage-protein
MKFKKYILTGTLALLLSSTAIATIEGNKADASSKKDYIIQSEFHDKRIAEELKSLLDQSYVNDLAAGSLNPYYKRTIMMNQYRAKAALKSNNFAKMAEAKVALENIYKEIDEIINR
>CP033506.1|AYU99356.1|1143333_1143831_+|Extracellular-fibrinogen-binding-protein-Efb
MKNKLIAKSLLTIAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVR
>CP033506.1|AYU99355.1|1142568_1143075_+|hypothetical-protein
MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFITIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAVNEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
>CP033506.1|AYU99354.1|1141496_1141898_-|hypothetical-protein
MKKNITKTIIASTVIAAGLSTQTNDAKAFFSYEWKGLEIAKNLADQAKKDDERIDKLMKESDKNLTPYKAETVNDLYLIVKKLSQGDVKKAVVRIKDGGPRDYYTFDLTRPLEENRKNIKVVKNGEIDSIYWD
>CP033506.1|AYU99353.1|1139807_1140311_+|phosphoesterase
MSKWIIVSDNHTESGVLYQIYEMHPDADVYLHLGDSEFAYDDTELSLFNRVKGNCDFYPEFENEAVAKYNDVKAFYTHGHLYQVNRTRDLLAEKGLELGCLFAFYGHTHVAKYEYINGVHVINPGSISQSRSSMEETYAEVIIDDQTLHGTINFKNRHHETISHTTF
>CP033506.1|AYU99352.1|1139227_1139815_+|Nucleoside-5-triphosphatase-RdgB-(dHAPTP,-dITP,-XTP-specific)
MKEIVIASNNQGKINDFKVIFPDYHVIGISELIPDFDVEETGSTFEENAILKSEAAAKALNKTVIADDSGLEVFALNGEPGIYSARYAGENKSDEANIEKLLNKLGNTTDRRAQFVCVISMSGPDMETKVFKGTVSGEIADGKYGENGFGYDPIFYVPKLDKTMAQLSKEQKGQISHRRNAINLLQAFFEGDKNV
>CP033506.1|AYU99362.1|1150754_1151480_-|hypothetical-protein
MKKNIMNKLVLSTALLLLETTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHFSLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEGYWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIRQTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPRNAEIEVILEKSN
>CP033506.1|AYU99363.1|1151917_1152919_+|Ornithine-carbamoyltransferase
MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDNIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF
>CP033506.1|AYU99364.1|1152938_1153874_+|Carbamate-kinase
MMAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVIIHGNGPQVGSINLGLNYAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPAFNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKNDTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINFNTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAALEGKVGTVIKK
>CP033506.1|AYU99365.1|1154045_1155602_+|Arginine/ornithine-antiporter-ArcD
MENTINESEKKKRFKLKMPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVNPHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMVEGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGTLCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGTTFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSAHFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS
>CP033506.1|AYU99366.1|1155909_1156137_+|hypothetical-protein
MTHLTKVLVTLTGICVVLLFSKYFVAYANMVFDWNLRWYMLENIPHLPIILFILMFIFGVPSEMIKDRQRKNNGV
>CP033506.1|AYU99367.1|1157636_1157825_+|hypothetical-protein
MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKNERSLDNMSLKNAELLYKFANSIFSNEN
>CP033506.1|AYU99368.1|1158736_1158871_+|antibacterial-protein
MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF
>CP033506.1|AYU99369.1|1158927_1159062_+|antibacterial-protein
MTGLAEAIANTVQAAQQHDSVKLGTSIVDIVANGVGLLGKLFGF
>CP033506.1|AYU99370.1|1159194_1159881_+|Pyrimidine-5'-nucleotidase-YjjG
MGYKNILIDFDDTIVDFYDAEEWAFHYMANVFNHKATKDDFLTFKKINHQHWEAFQQNKLTKSEVLSERFVNYFKHHQMEVDGHRADVLFRNGLAEAKVKYFDQTLETIVELSKRHDLYIVTNGVTETQKRRLNQTPLHKYIKKIFISEETGYQKPNPEFFNYVFNDIGEDERQHSIIVGDSLTSDILGGINAGIATCWFNFRGFDHNPGIIPDYEINSWKQLNDIVR
>CP033506.1|AYU99371.1|1162377_1162809_+|Cell-division-protein-MraZ
MFMGEYDHQLDTKGRMIIPSKFRYDLNERFIITRGLDKCLFGYTLDEWQQIEEKMKTLPMTKKDARKFMRMFFSGAVEVELDKQGRINIPQNLRKYANLTKECTVIGVSNRIEIWDRETWNDFYEESEESFEDIAEDLIDFDF

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Crispr_ID: CP033506_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033506_8

1540622-1540719

Orphan

Consensus_repeat	Method
GTTTCTTGTATCTTATTATTTTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033506_8

>merge|CP033506|8|1540622-1540719|CRISPRCasFinder
GTTTCTTGTATCTTATTATTTTGAGAGATTGGATTGGTACAAAATGAAAAACATGTTGTTTGGTATTAGACATGTTTGCTTGTATCTTATTATTTTGA

>CP033506|8|7|1540622-1540719|CRISPRCasFinder
GTTTCTTGTATCTTATTATTTTGA	GAGATTGGATTGGTACAAAATGAAAAACATGTTGTTTGGTATTAGACATG
TTTGCTTGTATCTTATTATTTTGA

Protein	Signature genes	Signature genes Name	Protein_function
CP033506.1\|AYU99682.1\|1550186_1551146_-\|respiratory-response-protein-SrrB	unknown	unknown	gnl\|CDD\|274368
CP033506.1\|AYU99665.1\|1530702_1532013_-\|GTP-binding-protein-EngA	unknown	unknown	gnl\|CDD\|234628
CP033506.1\|AYU99669.1\|1535685_1536672_-\|Thioredoxin-reductase	unknown	unknown	gnl\|CDD\|188533
CP033506.1\|AYU99677.1\|1544874_1545798_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|285184
CP033506.1\|AYU99671.1\|1538657_1540037_-\|ATP-dependent-DNA-helicase-RecS-(RecQ-family)	unknown	unknown	gnl\|CDD\|223588
CP033506.1\|AYU99680.1\|1548845_1549040_-\|hypothetical-protein	unknown	unknown	unknown
CP033506.1\|AYU99676.1\|1543762_1544566_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|285184
CP033506.1\|AYU99673.1\|1541087_1541336_+\|Ferredoxin	unknown	unknown	gnl\|CDD\|224064
CP033506.1\|AYU99674.1\|1541441_1541987_-\|Substrate-specific-component-RibU-of-riboflavin-ECF-transporter	unknown	unknown	gnl\|CDD\|226129
CP033506.1\|AYU99668.1\|1534791_1535490_+\|L-asparaginase	unknown	unknown	gnl\|CDD\|199208
CP033506.1\|AYU99664.1\|1529687_1530686_-\|Glycerol-3-phosphate-dehydrogenase-(NAD(P)+)	unknown	unknown	gnl\|CDD\|234629
CP033506.1\|AYU99663.1\|1529244_1529517_-\|DNA-binding-protein-HBsu	unknown	unknown	gnl\|CDD\|259853
CP033506.1\|AYU99675.1\|1542375_1543308_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|285184
CP033506.1\|AYU99667.1\|1534026_1534416_-\|Cytidylate-kinase	unknown	unknown	gnl\|CDD\|234579
CP033506.1\|AYU99679.1\|1546863_1548717_-\|hypothetical-protein	unknown	unknown	unknown
CP033506.1\|AYU99666.1\|1532234_1533200_-\|SSU-ribosomal-protein-S1p	unknown	unknown	gnl\|CDD\|235851
CP033506.1\|AYU99672.1\|1540026_1540551_-\|YpbB	unknown	unknown	gnl\|CDD\|227291
CP033506.1\|AYU99670.1\|1537073_1538162_-\|Elastin-binding-protein-EbpS	unknown	unknown	gnl\|CDD\|212030
CP033506.1\|AYU99678.1\|1545855_1546773_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|285184
CP033506.1\|AYU99681.1\|1549165_1549942_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|285184

Protein	Function_ID	Function_description	E-value
CP033506.1\|AYU99682.1\|1550186_1551146_-\|respiratory-response-protein-SrrB	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	1.32027e-69
CP033506.1\|AYU99665.1\|1530702_1532013_-\|GTP-binding-protein-EngA	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
CP033506.1\|AYU99669.1\|1535685_1536672_-\|Thioredoxin-reductase	gnl\|CDD\|188533	TIGR04018, thioredoxin_reductase, putative bacillithiol system oxidoreductase, YpdA family. Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete. [Unknown function, Enzymes of unknown specificity].	0
CP033506.1\|AYU99677.1\|1544874_1545798_-\|hypothetical-protein	gnl\|CDD\|285184	pfam07901, DUF1672, Protein of unknown function (DUF1672). This family is composed of hypothetical bacterial proteins of unknown function.	3.98337e-140
CP033506.1\|AYU99671.1\|1538657_1540037_-\|ATP-dependent-DNA-helicase-RecS-(RecQ-family)	gnl\|CDD\|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	1.0792e-160
CP033506.1\|AYU99676.1\|1543762_1544566_-\|hypothetical-protein	gnl\|CDD\|285184	pfam07901, DUF1672, Protein of unknown function (DUF1672). This family is composed of hypothetical bacterial proteins of unknown function.	1.7475e-133
CP033506.1\|AYU99673.1\|1541087_1541336_+\|Ferredoxin	gnl\|CDD\|224064	COG1141, Fer, Ferredoxin [Energy production and conversion].	3.36802e-23
CP033506.1\|AYU99674.1\|1541441_1541987_-\|Substrate-specific-component-RibU-of-riboflavin-ECF-transporter	gnl\|CDD\|226129	COG3601, COG3601, Predicted membrane protein [Function unknown].	1.53995e-49
CP033506.1\|AYU99668.1\|1534791_1535490_+\|L-asparaginase	gnl\|CDD\|199208	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase. Asparaginases (amidohydrolases, E.C. 3.5.1.1) are enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases. This model represents type II L-asparaginases, which tend to be highly specific for asparagine and localized to the periplasm. They are potent antileukemic agents and have been used in the treatment of acute lymphoblastic leukemia (ALL), but not without severe side effects. Tumor cells appear to have a heightened dependence on exogenous L-aspartate, and depleting their surroundings of L-aspartate may starve cancerous ALL cells. Type II L-asparaginase acts as a tetramer, which is actually a dimer of two tightly bound dimers. A conserved threonine residue is thought to supply the nucleophile hydroxy-group that attacks the amide bond. Many bacterial L-asparaginases have both L-asparagine and L-glutamine hydrolysis activities, to a different degree, and some of them are annotated as asparaginase/glutaminase.	5.83658e-99
CP033506.1\|AYU99664.1\|1529687_1530686_-\|Glycerol-3-phosphate-dehydrogenase-(NAD(P)+)	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	0
CP033506.1\|AYU99663.1\|1529244_1529517_-\|DNA-binding-protein-HBsu	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	2.83358e-46
CP033506.1\|AYU99675.1\|1542375_1543308_-\|hypothetical-protein	gnl\|CDD\|285184	pfam07901, DUF1672, Protein of unknown function (DUF1672). This family is composed of hypothetical bacterial proteins of unknown function.	6.62533e-119
CP033506.1\|AYU99667.1\|1534026_1534416_-\|Cytidylate-kinase	gnl\|CDD\|234579	PRK00023, cmk, (d)CMP kinase.	3.62606e-68
CP033506.1\|AYU99666.1\|1532234_1533200_-\|SSU-ribosomal-protein-S1p	gnl\|CDD\|235851	PRK06676, rpsA, 30S ribosomal protein S1; Reviewed.	1.06812e-168
CP033506.1\|AYU99672.1\|1540026_1540551_-\|YpbB	gnl\|CDD\|227291	COG4955, COG4955, Uncharacterized protein conserved in bacteria [Function unknown].	8.20925e-76
CP033506.1\|AYU99670.1\|1537073_1538162_-\|Elastin-binding-protein-EbpS	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	3.37601e-05
CP033506.1\|AYU99678.1\|1545855_1546773_-\|hypothetical-protein	gnl\|CDD\|285184	pfam07901, DUF1672, Protein of unknown function (DUF1672). This family is composed of hypothetical bacterial proteins of unknown function.	1.49285e-120
CP033506.1\|AYU99681.1\|1549165_1549942_-\|hypothetical-protein	gnl\|CDD\|285184	pfam07901, DUF1672, Protein of unknown function (DUF1672). This family is composed of hypothetical bacterial proteins of unknown function.	1.97776e-115

>CP033506.1|AYU99672.1|1540026_1540551_-|YpbB
MFKAITLKGPCYLHYYLQGYDEPMYTRQQVSLIEKLSQQQLFEYEMNNLVTMMFELESGEYTILSKIIMKPTLLNQTYITYTKLLEQFTMEDIAAQQQVKINTIEDHVLEILIKGYMSNYDDYVELEDQLQFLNFYQQHRGERLKFYKEQFDTLSYFQLKVLIVGFERGDLNVA
>CP033506.1|AYU99671.1|1538657_1540037_-|ATP-dependent-DNA-helicase-RecS-(RecQ-family)
MLHDILRNKFGFESFKPGQQEIIESIMSQQHTLGILPTGSGKSLCYQIPTYLSGKPTLIISPLISLMDDQVMQLKINGEKRVTCIHSGMDEIEKKHNIKCLRHSRFIFLSPEFLLQPSNFKLISMIDFGMIVLDEAHCLSEWGYDFRPHYALIGKVTKHFKEAVVLALTATAPPHLQDDLTEMLAIQFNVIKTTMNRPNISFKHLNFHDDEDKIEWLLPFLQQSGPTIIYVSSKKMCLNLAQLIYDSGFLTGIYHGDMNYQERHTVQQQFLNNDIPIIVATSAFGMGINKKDIRTIIHFHLSTSPSNYIQEIGRAGRDGELSQAISLFQPDDKYILETLLFADMITEEDVQNFEIGEFLAPDKQAVLTTLQSFYSIGALKQIFKQSFKRKQLGFFRMIGYCKLDQCRRKYLLEFFGEYPPAQDRCCDNDSNITDIAILNKKKVIRSIGFDEKLQNLFLR
>CP033506.1|AYU99670.1|1537073_1538162_-|Elastin-binding-protein-EbpS
MDKSHPEPIEDNDKHETIKEAENNTEHSTVSDKSEAEQSQQPKPYFATGANQANTSKDKHDDVTVKQDKDESKDHHSGKKGAAIGAGTAGVAGAAGAMGVSKAKKHSNDAQNKSNSDKSNNSTEDKASQDKSKDHHNGKKGAAIGAGTAGLAGGAASKSASAASKPHASNNASQNHDEHDNHDRDKERKKGGMAKVLLPLIAAVLIIGALAIFGGMALNNHNNGTKENKIANTNKNNADESKDKDTSKDASKDKSKSTDSDKSKEDQDKATKDESDNDQNNANQANNQAQNNQNQQQANQNQQQQQQRQGGGQRHTVNGQENLYRIAIQYYGSGSPENVEKIRRANGLSGNNIRNGQQIVIP
>CP033506.1|AYU99669.1|1535685_1536672_-|Thioredoxin-reductase
MQKVESIIIGGGPCGLSAAIEQKRKGIDTLIIEKGNVVESIYNYPTHQTFFSSSDKLSIGDVPFIVEESKPRRNQALVYYREVVKHHQLKVNAFEEVLTVKKMNNKFTITTTKDVYECRFLTIATGYYGQHNTLEVEGADLPKVFHYFKEAHPYFDQDVVIIGGKNSAIDAALELEKAGANVTVLYRGGDYSPSIKPWILPNFTALVNHEKIDMEFNANVTQITEDTVTYEVNGESKTIHNDYVFAMIGYHPDYEFLKSVGIQINTNEFGTVPMYNKETYETNIENCYIAGVIAAGNDANTIFIENGKFHGGIIAQNMLAKKQTPLES
>CP033506.1|AYU99668.1|1534791_1535490_+|L-asparaginase
MKHLLVIHTGGTISMSQDQSNKVVTNDINPISMHQDVINQYAQIDELNPFNVPSPHMTIQHVKQLKDIILEAVTNKYYDGFVITHGTDTLEETAFLLDLILGIEQPVVITGAMRSSNEIGSDGLYNYISAIRVASDEKARHKGVMVVFNDEIHTARNVTKTHTSNTNTFQSPNHGPLGVLTKDRVQFHHMPYRQQALENVNDKLNVPLVKAYMGMPGDIFSFYSREGIMYGY
>CP033506.1|AYU99667.1|1534026_1534416_-|Cytidylate-kinase
MTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVSQIK
>CP033506.1|AYU99666.1|1532234_1533200_-|SSU-ribosomal-protein-S1p
MKHCTIDEENETGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEGVVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERVSLSIKATLPNEDVVESDPSTTKAYLESEEEDNPTIGDMIGDKLKNLKL
>CP033506.1|AYU99665.1|1530702_1532013_-|GTP-binding-protein-EngA
MTKPIVAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYSSGEWLTHDFNIIDTGGIEIGDAPFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQILYKSKKPVVLAVNKVDNMEMRTDVYDFYSLGFGEPYPISGSHGLGLGDLLDAVVSHFGEEEEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEDRVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDKRVAGYAHEQGKAVVIVVNKWDTVEKDSKTMKKFEDEVRKEFQFLDYAQIAFVSAKERTRLRTLFPYINEASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYATQVAIEPPTFVVFVNDVELMHFSYKRYLENQIRAAFGFEGTPIHIIARKRN
>CP033506.1|AYU99664.1|1529687_1530686_-|Glycerol-3-phosphate-dehydrogenase-(NAD(P)+)
MTKITVFGMGSFGTALANVLAENGHDVLMWGKNQDAVDELNTCHTNKKYLKYAKLNVNIIATSDMTKAIQFADIYLMALPTKAMREVATQINDKLTSKKTFIHVAKGIENGTFKRVSEMIEDSISPEYNAGIGVLSGPSHAEEVVVKQPTTVAASSKDKSVSKLTQDLFMNDYLRVYTNDDLIGVELGGALKNIIAVASGIVAGIGYGDNAKAALMTRGLAEISRLGEKLGADPMTFLGLGGIGDLIVTCTSTHSRNFTLGYKLGQGESMDQALSEMNMVVEGIYTTKSVYHLAKEKNVDMPITNALYRVLFENISVKECVKDLMERDKKSE
>CP033506.1|AYU99663.1|1529244_1529517_-|DNA-binding-protein-HBsu
MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARKGRNPQTGKEIDIPASKVPAFKAGKALKDAVK
>CP033506.1|AYU99673.1|1541087_1541336_+|Ferredoxin
MAKYTIVDMDTCIACGACGAAAPDIYDYDDEGIAFVILDDNQGTAEVPEELYEDMEDAIDGCPTDSIKIADESFDGDALKFE
>CP033506.1|AYU99674.1|1541441_1541987_-|Substrate-specific-component-RibU-of-riboflavin-ECF-transporter
MQQNKRLITISMLSAIAFVLTFIKFPIPFLPPYLTLDFSDVPSLLATFTFGPVAGIVVALVKNLLNYLFSMGDPVGPFANFLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNYFVLLPLYGMIFNLADIANNLKVIIVSGIIPFNIIKGIVISIVFILLYRRLANFLKRI
>CP033506.1|AYU99675.1|1542375_1543308_-|hypothetical-protein
MLKKAKLILIATLLLSGCSTTNNESNNETKSVPEEMEASKYVGQGFQPPAEKDAIEFAKKHKDKIAKRGEQFFMDNFGLKVKATNVVGSGDGVEVYVHCDDHDIVFNASIPFDKSIIDSDSSLRSEDKGDDMSTLVGTVLSGFEYRAHKEELDNLTEVLKEYKSKYKYTGYTENAIMKTQNSGFRNEYYYLTAIPYTLDEYKKYFQPLIKEDDKSFRDGMRNSKKQLKDKSRPYVVTTLFSTKDNFTKDNTIDEMIDFSEVLKKKKNIPHDLNVSLQISNKYINTTRPNYSKKDVIEVGVFNHEKANTND
>CP033506.1|AYU99676.1|1543762_1544566_-|hypothetical-protein
MPEEMEASKYVGQGFQPPAEKDAIEFAKKHRKEFEKVGEQFFMDNFGLKVKATNVVGKDDGVEVYVHCDDHGIVFNASLPLYKDAIHQKGSMRSNDNGNDMSMVVGTVLSGFEYRAQKEKYDNLYKFFKENEKKYQYTGFTNEAINKTQNVGYQNEYFYITYLSRNLKEYRKYYEPLIRKNDKEFKEGMQRARKELNYTANTDAVSTLFSTKKNFTKDNTVDDVIELSNKLKDKPNMPQKSQVTIQLGKSSINTKKPFYDDINPIEG
>CP033506.1|AYU99677.1|1544874_1545798_-|hypothetical-protein
MFKRTKLILIATLLLSGCSTTNNESNNETKSVPEEMEASKYVGQGFQPPAEKDAIEFAKKHRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCDDHGIVFNASLPLYKDAIHQKGSMRSNDNGDDMSTMVCTVLSGFEYRAQKEKYDNLYKFFKENEKKYQYTGFTKEAINKTQNVGYQNEYFYITYLSRNLKEYRKYYEPLIHKNDKEFKEGMQKARKKLNYTANTNTVATLFSTNDERNRKEKINNVIDLSEKIERTKDMPIKNTITTQLGNKLIGTKKARFDDKKVVSFGAFEDEYNK
>CP033506.1|AYU99678.1|1545855_1546773_-|hypothetical-protein
MLKKAKLILIATLLLSGCSAIENESKKDRNTETKSVPEEMEASKYVGQGFQPPAEKDAIEFAKKHKDKIAKRGEQFFMDNFGLKVKATNVVGSGDGVEVYVHCDDHDIVFNASIPFDKSIIDSDSSLRSEDKGDDMSTLVGTVLSGFEYRAHKEKYDNLYKFFKENEKKYQYTGFTKEAINKTQNSGYENEYFYIVANIPTLQEYRKYYEPLIKKNNLNFKKGMKQARKGVGYKAAIEVHTTLFSRSSNFSKDKKLDDVLDLSESTKKLHLNFENTKIFLQLAKSTISTNRVNYSDNESIRIEVE
>CP033506.1|AYU99679.1|1546863_1548717_-|hypothetical-protein
MDNEKTTTPLLEQNNKFLELYKKKLDDANKLSNSNFYRKYGEKVAKYKNKEVVSEDGNSQGGASAIHQGVEHPEKHIVSTNPAMLPEAIWRNLKQSNFENIINFHSTNDVLSWLQDPFAKEMPGKRINIRDGVPTLNGLIDSHLGFKREFNSKTNEYKDIPVHKIESVKDTEIKNGKEVKKVININLDMDGRIPINVWTGDSIARSGKGKNIKLDIEKLGDLYQLVTGETSTMLQECVTFLNESFNISQSENSYFGDRKHKLKQKFKNVIEIDVLENMSRNITSKKNELFESIDSFMDKIGPIAILVPALNLKPLKWGINKVDSQFQRGIERIHDSIDKILVKMFKNLDHDLQDGVTEEMMKHLKIVRENIILIKNQNDIYGNQIADIKSIMSYQDATIMDGNLNINYNGQHMVSGKVNLSKYLSRKMTILKNHIDNAVEELSDYIQKVYNENFKELVRNINNTTEIIKGIIDGLNLLITMLYEKRIIDGLKESSIDRKQFENSIEELKINLTKWTDFLHDLKAASPILENHLDDIVKNMKPLIVQMIFEPSHYDDMFILNTQAHARLDQMAKQFEVVCNGLNENEGQAIQTMDQSASLIRSNLIQVKEQLEKLAVY
>CP033506.1|AYU99680.1|1548845_1549040_-|hypothetical-protein
MGYLIMNKINDRDLTELSGYWVYQDLKDNSTIKVNGNKYKVLSTISNNKNKNINGSADIKFLNY
>CP033506.1|AYU99681.1|1549165_1549942_-|hypothetical-protein
MKKFIGSVLATTLILGGCSTMENESKKDTNTETKSVPEEMEASKYVGQGFQPPAEKDAIEFAKKHKDKIAKRGEQFFMDNFGLKVKATNVVGSGKGVEVFVHCDDHDIVFNASIPFDKSIIDSDSSLRSEDKGDDMSTLVGTVLSGFEYRAQKEKYDKLYKFFKDNEEKYQYTGFTKEAINKTQNSGYENEYFYISTIPYNLTEYRNYFEPLLNKSNSEFSKEMSNVKKQLKDKSKVSVTTTLFSKNKNYTKKVTVKM
>CP033506.1|AYU99682.1|1550186_1551146_-|respiratory-response-protein-SrrB
MVEGVLGINESRQIILSNKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDKIEQGGKSGVVVTVRDMTNEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE

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Crispr_ID: CP033506_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033506_9

1554579-1554729

Orphan

Consensus_repeat	Method
CATTGCATGAACGTACTGCATATACTGCTCTTTAATGCTTGCATAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033506_9

>merge|CP033506|9|1554579-1554729|CRISPRCasFinder
CATTGCATGAACGTACTGCATATACTGCTCTTTAATGCTTGCATAGGTATCATAATATCTATTTAAATTCTTATAAGATTGCATAATATTAATTTAAGCTGTTTCATTGCATGAACGTACTGCATATACTGCTCTGTTAATGCTTGCATAG

>CP033506|9|8|1554579-1554729|CRISPRCasFinder
CATTGCATGAACGTACTGCATATACTGCTCTTTAATGCTTGCATAGG	TATCATAATATCTATTTAAATTCTTATAAGATTGCATAATATTAATTTAAGCTGTTT
CATTGCATGAACGTACTGCATATACTGCTCTGTTAATGCTTGCATAG

Protein	Signature genes	Signature genes Name	Protein_function
CP033506.1\|AYU99689.1\|1555491_1556379_-\|Site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|227308
CP033506.1\|AYU99696.1\|1560812_1561733_-\|Ribonuclease-Z	unknown	unknown	gnl\|CDD\|274246
CP033506.1\|AYU99683.1\|1551592_1551886_-\|osmosensitive-K+-channel-histidine-kinase-associated-with-respiratory-response-protein-SrrB	unknown	unknown	gnl\|CDD\|376122
CP033506.1\|AYU99697.1\|1562045_1563530_+\|Glucose-6-phosphate-1-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
CP033506.1\|AYU99681.1\|1549165_1549942_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|285184
CP033506.1\|AYU99694.1\|1558993_1559749_-\|Oxidoreductase,-short-chain-dehydrogenase/reductase-family	unknown	unknown	gnl\|CDD\|223377
CP033506.1\|AYU99680.1\|1548845_1549040_-\|hypothetical-protein	unknown	unknown	unknown
CP033506.1\|AYU99690.1\|1556427_1556877_-\|Ferric-uptake-regulation-protein-FUR	unknown	unknown	gnl\|CDD\|223806
CP033506.1\|AYU99677.1\|1544874_1545798_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|285184
CP033506.1\|AYU99693.1\|1558729_1558978_-\|hypothetical-protein	unknown	unknown	unknown
CP033506.1\|AYU99679.1\|1546863_1548717_-\|hypothetical-protein	unknown	unknown	unknown
CP033506.1\|AYU99692.1\|1557605_1558514_+\|putative-oxidoreductase-YqkF	unknown	unknown	gnl\|CDD\|381312
CP033506.1\|AYU99686.1\|1553563_1553989_-\|Segregation-and-condensation-protein-B	unknown	unknown	gnl\|CDD\|224304
CP033506.1\|AYU99688.1\|1554907_1555414_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224464
CP033506.1\|AYU99695.1\|1559890_1560703_+\|Pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|272911
CP033506.1\|AYU99685.1\|1552722_1553460_-\|Ribosomal-large-subunit-pseudouridine-synthase-B	unknown	unknown	gnl\|CDD\|224108
CP033506.1\|AYU99682.1\|1550186_1551146_-\|respiratory-response-protein-SrrB	unknown	unknown	gnl\|CDD\|274368
CP033506.1\|AYU99678.1\|1545855_1546773_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|285184
CP033506.1\|AYU99691.1\|1556981_1557524_-\|ADP-ribose-pyrophosphatase	unknown	unknown	gnl\|CDD\|239516
CP033506.1\|AYU99684.1\|1551866_1552592_-\|respiratory-response-protein-SrrA	unknown	unknown	gnl\|CDD\|223816

Protein	Function_ID	Function_description	E-value
CP033506.1\|AYU99689.1\|1555491_1556379_-\|Site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|227308	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair].	7.03713e-163
CP033506.1\|AYU99696.1\|1560812_1561733_-\|Ribonuclease-Z	gnl\|CDD\|274246	TIGR02651, Ribonuclease_Z, ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGRFAMs model TIGR02649, are designated ribonuclease BN. [Transcription, RNA processing].	6.89488e-122
CP033506.1\|AYU99683.1\|1551592_1551886_-\|osmosensitive-K+-channel-histidine-kinase-associated-with-respiratory-response-protein-SrrB	gnl\|CDD\|376122	pfam18698, HisK_sensor, Histidine kinase sensor domain. The Bacillus subtilis ResD-ResE two-component (TC) regulatory system activates genes involved in nitrate respiration in response to oxygen limitation or nitric oxide (NO). The sensor kinase ResE activates the response regulator ResD through phosphorylation, which then binds to the regulatory region of genes involved in anaerobiosis to activate their transcription. In other words, ResE is involved in sensing signals related to the redox state of the cells. ResE is composed of an N-terminal signal input domain and a C-terminal catalytic domain. The N-terminal domain contains two transmembrane subdomains and a large extra-cytoplasmic loop. Mutational analysis indicate that cytoplasmic ResE lacking the transmembrane segments and the extra-cytoplasmic loop retains the ability to sense oxygen limitation and NO, which leads to transcriptional activation of ResDE-dependent genes. Having said that, it is also proposed that the extra-cytoplasmic region may serve as a second signal-sensing subdomain. This suggests that the extracytoplasmic region could contribute to amplification of ResE activity leading to the robust activation of genes required for anaerobic metabolism in B. subtilis. This entry represents the extracytoplasmic subdomain. Family members also include SrrB found in S. aureus that is similar to ResE of B. subtilis.	4.95036e-09
CP033506.1\|AYU99697.1\|1562045_1563530_+\|Glucose-6-phosphate-1-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0
CP033506.1\|AYU99681.1\|1549165_1549942_-\|hypothetical-protein	gnl\|CDD\|285184	pfam07901, DUF1672, Protein of unknown function (DUF1672). This family is composed of hypothetical bacterial proteins of unknown function.	1.97776e-115
CP033506.1\|AYU99694.1\|1558993_1559749_-\|Oxidoreductase,-short-chain-dehydrogenase/reductase-family	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	1.83036e-80
CP033506.1\|AYU99690.1\|1556427_1556877_-\|Ferric-uptake-regulation-protein-FUR	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	9.73117e-51
CP033506.1\|AYU99677.1\|1544874_1545798_-\|hypothetical-protein	gnl\|CDD\|285184	pfam07901, DUF1672, Protein of unknown function (DUF1672). This family is composed of hypothetical bacterial proteins of unknown function.	3.98337e-140
CP033506.1\|AYU99692.1\|1557605_1558514_+\|putative-oxidoreductase-YqkF	gnl\|CDD\|381312	cd19086, AKR_AKR11C1, AKR11C family of aldo-keto reductase (AKR). Bacillus subtilis uncharacterized oxidoreductase YqkF is a founding member of aldo-keto reductase family 11 member C1 (AKR11C1). It may function as oxidoreductase. This family also includes Bacillus halodurans AKR11C1, an NADPH-dependent 4-hydroxy-2,3-trans-nonenal reductase.	1.70831e-85
CP033506.1\|AYU99686.1\|1553563_1553989_-\|Segregation-and-condensation-protein-B	gnl\|CDD\|224304	COG1386, scpB, Chromosome segregation and condensation protein B [DNA replication, recombination and repair].	7.26366e-43
CP033506.1\|AYU99688.1\|1554907_1555414_+\|hypothetical-protein	gnl\|CDD\|224464	COG1547, COG1547, Predicted metal-dependent hydrolase [General function prediction only].	1.11759e-30
CP033506.1\|AYU99695.1\|1559890_1560703_+\|Pyrroline-5-carboxylate-reductase	gnl\|CDD\|272911	TIGR00112, Pyrroline-5-carboxylate_reductase, pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. [Amino acid biosynthesis, Glutamate family].	4.28498e-105
CP033506.1\|AYU99685.1\|1552722_1553460_-\|Ribosomal-large-subunit-pseudouridine-synthase-B	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	1.47696e-96
CP033506.1\|AYU99682.1\|1550186_1551146_-\|respiratory-response-protein-SrrB	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	1.32027e-69
CP033506.1\|AYU99678.1\|1545855_1546773_-\|hypothetical-protein	gnl\|CDD\|285184	pfam07901, DUF1672, Protein of unknown function (DUF1672). This family is composed of hypothetical bacterial proteins of unknown function.	1.49285e-120
CP033506.1\|AYU99691.1\|1556981_1557524_-\|ADP-ribose-pyrophosphatase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	5.03619e-52
CP033506.1\|AYU99684.1\|1551866_1552592_-\|respiratory-response-protein-SrrA	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.04105e-91

>CP033506.1|AYU99686.1|1553563_1553989_-|Segregation-and-condensation-protein-B
MDNHGILESLLFTAGDEGLDEKQLLEILDMSKDQLVELIENYSSHGLMIQRFGTTYVLTTKKEAATYIEQLIEQKSQMKLSQAAMEVLSIIAYNQPLSRSDIELIRSINSDGAVKTLIAKGLVEAKVVNEQRSQLITTDLF
>CP033506.1|AYU99685.1|1552722_1553460_-|Ribosomal-large-subunit-pseudouridine-synthase-B
MTKELERLQKRIANSGYTSRRKAETLISEGKVKVNGTTVTELGTKVKPSDTIEVEGIKIELEDKIYILFHKPTQVITSVSDDRGRTVVTDYFKDIEARIYPVGRLDYDTSGLLLLTNDGEFTNLMTHPRYQIKKKYVAKLKGYLMREEVKALEKGIELEDGMTQPAEVKVKKQDKDKNTTLVEITITEGRNRQVRRMFEHFGHQVTKLSRIEYGPLNVVGLNAGEGRVLTPHEVKVMRHLAEHGK
>CP033506.1|AYU99684.1|1551866_1552592_-|respiratory-response-protein-SrrA
MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSTTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQLLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPAK
>CP033506.1|AYU99683.1|1551592_1551886_-|osmosensitive-K+-channel-histidine-kinase-associated-with-respiratory-response-protein-SrrB
MMSRLNSVVIKLWLTIILIVTTVLILLSIALITFMQYYFTQETENAIREDARRISSLVEQSHNKEEAIKYSQTLIENPGGLMIINNKHRQSTASLLI
>CP033506.1|AYU99682.1|1550186_1551146_-|respiratory-response-protein-SrrB
MVEGVLGINESRQIILSNKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDKIEQGGKSGVVVTVRDMTNEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE
>CP033506.1|AYU99681.1|1549165_1549942_-|hypothetical-protein
MKKFIGSVLATTLILGGCSTMENESKKDTNTETKSVPEEMEASKYVGQGFQPPAEKDAIEFAKKHKDKIAKRGEQFFMDNFGLKVKATNVVGSGKGVEVFVHCDDHDIVFNASIPFDKSIIDSDSSLRSEDKGDDMSTLVGTVLSGFEYRAQKEKYDKLYKFFKDNEEKYQYTGFTKEAINKTQNSGYENEYFYISTIPYNLTEYRNYFEPLLNKSNSEFSKEMSNVKKQLKDKSKVSVTTTLFSKNKNYTKKVTVKM
>CP033506.1|AYU99680.1|1548845_1549040_-|hypothetical-protein
MGYLIMNKINDRDLTELSGYWVYQDLKDNSTIKVNGNKYKVLSTISNNKNKNINGSADIKFLNY
>CP033506.1|AYU99679.1|1546863_1548717_-|hypothetical-protein
MDNEKTTTPLLEQNNKFLELYKKKLDDANKLSNSNFYRKYGEKVAKYKNKEVVSEDGNSQGGASAIHQGVEHPEKHIVSTNPAMLPEAIWRNLKQSNFENIINFHSTNDVLSWLQDPFAKEMPGKRINIRDGVPTLNGLIDSHLGFKREFNSKTNEYKDIPVHKIESVKDTEIKNGKEVKKVININLDMDGRIPINVWTGDSIARSGKGKNIKLDIEKLGDLYQLVTGETSTMLQECVTFLNESFNISQSENSYFGDRKHKLKQKFKNVIEIDVLENMSRNITSKKNELFESIDSFMDKIGPIAILVPALNLKPLKWGINKVDSQFQRGIERIHDSIDKILVKMFKNLDHDLQDGVTEEMMKHLKIVRENIILIKNQNDIYGNQIADIKSIMSYQDATIMDGNLNINYNGQHMVSGKVNLSKYLSRKMTILKNHIDNAVEELSDYIQKVYNENFKELVRNINNTTEIIKGIIDGLNLLITMLYEKRIIDGLKESSIDRKQFENSIEELKINLTKWTDFLHDLKAASPILENHLDDIVKNMKPLIVQMIFEPSHYDDMFILNTQAHARLDQMAKQFEVVCNGLNENEGQAIQTMDQSASLIRSNLIQVKEQLEKLAVY
>CP033506.1|AYU99678.1|1545855_1546773_-|hypothetical-protein
MLKKAKLILIATLLLSGCSAIENESKKDRNTETKSVPEEMEASKYVGQGFQPPAEKDAIEFAKKHKDKIAKRGEQFFMDNFGLKVKATNVVGSGDGVEVYVHCDDHDIVFNASIPFDKSIIDSDSSLRSEDKGDDMSTLVGTVLSGFEYRAHKEKYDNLYKFFKENEKKYQYTGFTKEAINKTQNSGYENEYFYIVANIPTLQEYRKYYEPLIKKNNLNFKKGMKQARKGVGYKAAIEVHTTLFSRSSNFSKDKKLDDVLDLSESTKKLHLNFENTKIFLQLAKSTISTNRVNYSDNESIRIEVE
>CP033506.1|AYU99677.1|1544874_1545798_-|hypothetical-protein
MFKRTKLILIATLLLSGCSTTNNESNNETKSVPEEMEASKYVGQGFQPPAEKDAIEFAKKHRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCDDHGIVFNASLPLYKDAIHQKGSMRSNDNGDDMSTMVCTVLSGFEYRAQKEKYDNLYKFFKENEKKYQYTGFTKEAINKTQNVGYQNEYFYITYLSRNLKEYRKYYEPLIHKNDKEFKEGMQKARKKLNYTANTNTVATLFSTNDERNRKEKINNVIDLSEKIERTKDMPIKNTITTQLGNKLIGTKKARFDDKKVVSFGAFEDEYNK
>CP033506.1|AYU99688.1|1554907_1555414_+|hypothetical-protein
MQQALINFYYQFHTKQHYFLCHDILEDAWKAENNYSKQDAVVSLILFATACYHYRRNNLKGAYKSFNKSKEIIQNAKDRDVLYLNLNDYQLLIEQQIAKLNAAKPFSSVILPITPVFERIIKANYPDYDYNQETATDPFIVDHHMRRDRSEVIAAKEEAIQLRKHRRN
>CP033506.1|AYU99689.1|1555491_1556379_-|Site-specific-tyrosine-recombinase-XerD
METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAVIEYLTTYIETIRPQLLKKTITEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA
>CP033506.1|AYU99690.1|1556427_1556877_-|Ferric-uptake-regulation-protein-FUR
MEERLNRVKQQLQQSSYKLTPQREATVRVLIENEKDHLSAEDVYLKVKDKAPEIGLATVYRTLELLAELKVVDKINFGDGVARFDLRKEGAKHFHHHLVCMECGRVDEIDEDLLPEVENRVENEFNFKILDHRLTFHGVCETCQAKGKG
>CP033506.1|AYU99691.1|1556981_1557524_-|ADP-ribose-pyrophosphatase
MDLNEKTIDRTVIYNGKIVDVEIHTVTLPNGETSTRELVYHNGAVAVCAVTPKKEVVLVKQYRKSVEKPLLEIPAGKLEDDEDRVEAAKRELEEETGYIAKELTHVVDMYGSPGFCDEQLSIYFTDNLEEGTVHLDEDEFVEVIKVPIENVKSMLMNKEIEDAKTIIALQHLLLNYNHSK
>CP033506.1|AYU99692.1|1557605_1558514_+|putative-oxidoreductase-YqkF
MQKNILKSGIALSELGLGCMSLGTDLKKAEQIIDCAVENGITYFDTADMYDKGINESVVGKALLKYQQRDDIVIGTKVGNRLTKDGSTTWDPSKSYIKEAVKGSLKRLGIDHIDLYQLHGGTIDDPLDETISAFDELKQEGLIRAYGISSIRPNVIDYYLKHSQIETIMSQFNLIDNRPESLLDAIHNNDVKVLARGPVSKGLLTSNSVNVLDNKFKDGIFDYSHDELGETIASIKEIESNLSALTFSYLTSYDVLGSIIVGASSVDQLKENIENYHTKVSLDQIKTARARVKDLEYTNHLV
>CP033506.1|AYU99693.1|1558729_1558978_-|hypothetical-protein
MNCQSESVVRLCVRYAEQLSVFEEFTVLDILGDISVDQISDSTLYYTCEKFKLLVLQGNVLGVQIITNNDESTCEVKYRKMF
>CP033506.1|AYU99694.1|1558993_1559749_-|Oxidoreductase,-short-chain-dehydrogenase/reductase-family
MKGQHFIVTGGTSGLGLSIVRKLLENKVHVTLLVRDVDKATRIFEQELGKTINVIPCDLNDLKSIQALQFEDNTSFDGFIYSAGLGYFKSISDHSFSEMIETYQLNLISFNVLYTVLRPYLTSNAHIVGISSQAAFSTQANAAHYGASKAGFYALMNALRLESPNIHIMTVNVGPIDTPFHQKADPSMKYAKKMGKIMLDANQLAEDIIYGIKTKQLEINRPKWMHHALKMYQIAPRFFERCFPKLFKNKA
>CP033506.1|AYU99695.1|1559890_1560703_+|Pyrroline-5-carboxylate-reductase
MKLVFYGAGNMAQAIFTGIINSSNLDANDIYLTNKSNEQALKAFAEKLGVNYSYDDATLLKDADYVFLGTKPHDFDALATRIKPHITKDNCFISIMAGIPIDYIKQQLECQNPVARIMPNTNAQVGHSVTGISFSNNFDPKSKDEINDLVKAFGSVIEVSEDHLHQVTAITGSGPAFLYHVFEQYVKAGTKLGLEKEQVEESIRNLIIGTSKMIERSDLSMAQLRKNITSKGGTTQAGLDTLSQYDLVSIFEDCLNAAVERSIELSNIED
>CP033506.1|AYU99696.1|1560812_1561733_-|Ribonuclease-Z
MEVTFFGTSAGLPTKERNTQAIALNLEPYSNSIWLFDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYVEMSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVMAPETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGDTKPCSNERVISRDADVMVHEATYIDGEKHLANNYHHSHIEDVFALIKEANVKRTLITHLSNRYNTEDINEIYQTLIQNEDTPNFNFVKDFDSFKV
>CP033506.1|AYU99697.1|1562045_1563530_+|Glucose-6-phosphate-1-dehydrogenase
MSTKNKHIPCLITIFGATGDLSHRKLFPSIFHLYQQDNLDEHIAIIGIGRRDITNDDFRNQVKSSIQKHVKDTNKIDAFMEHVFYHRHDVSNEESYQELLDFSNELDSQFELKGNRLFYLAMAPQFFGVISDYLKSSGLTDTRGFKRLVIEKPFGSDLKSAEALNNQIRKSFKEEEIYRIDHYLGKDMVQNIEVLRFANAMFEPLWNNKYISNIQVTSSEILGVEDRGGYYESSGALKDMVQNHMLQMVALLAMEAPISLNSEDIRAEKVKVLKSLRHFQSEDVKKNFVRGQYGEGYIDGKQVKAYRDEDRVADDSNTPTFVSGKLTIDNFRWAGVPFYIRTGKRMKSKTIQVVVEFKEVPMNLYYETDKLLDSNLLVINIQPNEGVSLHLNAKKNTQGIETEPVQLSYSMSAQDKMNTVDAYENLLFDCLKGDATNFTHWEELKSTWKFVDAIQDEWNMVDPEFPNYESGTNGPLESDLLLARDGNHWWDDIQ

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Crispr_ID: CP033506_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033506_10

2197580-2197736

Orphan

Consensus_repeat	Method
CCCCTACTTTTCAACTTTAGTTGTTAGGGGCTCTTATGCAG	PILER-CR

2 spacers

csa3

The CRISPR arrays of CP033506_10

>merge|CP033506|10|2197580-2197736|PILER-CR
CTTACAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTATTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTCAACTTTAGTTGTTAGGGGCTCTTATGCAG

>CP033506|10|1|2197580-2197736|PILER-CR
CTTACAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGC	GTAGCATCCAACTGTATTCCTCTAT
TTTTCAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTA	GCGCAGGCGCTCCTAC
TTTTCAACTTTAGTTGTTAGGGGCTCTTATGCAG

Protein	Signature genes	Signature genes Name	Protein_function
CP033506.1\|AYV00267.1\|2203355_2205161_-\|Glutamine--fructose-6-phosphate-aminotransferase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
CP033506.1\|AYV00256.1\|2189539_2189953_-\|Hypothetical-protein	unknown	unknown	gnl\|CDD\|225556
CP033506.1\|AYV00265.1\|2201416_2202274_-\|Hydrolase,-HAD-superfamily	unknown	unknown	gnl\|CDD\|223635
CP033506.1\|AYV00262.1\|2195229_2196210_+\|Zn(II)-and-Co(II)-transmembrane-diffusion-facilitator	unknown	unknown	gnl\|CDD\|224151
CP033506.1\|AYV00258.1\|2192456_2192687_-\|Hypothetical-protein	unknown	unknown	unknown
CP033506.1\|AYV00260.1\|2194090_2194756_-\|oxidoreductase-ylbE	unknown	unknown	gnl\|CDD\|187554
CP033506.1\|AYV00270.1\|2209556_2209991_+\|PTS-system,-mannitol-specific-IIA-component	unknown	unknown	gnl\|CDD\|227014
CP033506.1\|AYV00259.1\|2192717_2193656_-\|Mannose-6-phosphate-isomerase,-class-I	unknown	unknown	gnl\|CDD\|224399
CP033506.1\|AYV00255.1\|2188896_2189340_-\|DNA-protection-during-starvation-protein	unknown	unknown	gnl\|CDD\|223854
CP033506.1\|AYV00273.1\|2214005_2218835_-\|FmtB-(Mrp)-protein-involved-in-methicillin-resistance-and-cell-wall-biosynthesis	unknown	unknown	gnl\|CDD\|275089
CP033506.1\|AYV00263.1\|2196475_2197567_+\|Lytic-regulatory-protein	unknown	unknown	unknown
CP033506.1\|AYV00272.1\|2211415_2213416_-\|FmtB-(Mrp)-protein-involved-in-methicillin-resistance-and-cell-wall-biosynthesis	unknown	unknown	gnl\|CDD\|336743
CP033506.1\|AYV00268.1\|2205841_2207095_+\|PTS-system,-mannitol-specific-IIC-component-/-PTS-system,-mannitol-specific-IIB-component	unknown	unknown	gnl\|CDD\|225123
CP033506.1\|AYV00269.1\|2207412_2209545_+\|Mannitol-operon-activator,-BglG-family	unknown	unknown	gnl\|CDD\|226234
CP033506.1\|AYV00257.1\|2190409_2191783_-\|Hypothetical-protein	unknown	unknown	gnl\|CDD\|376640
CP033506.1\|AYV00271.1\|2209990_2211097_+\|Mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
CP033506.1\|AYV00264.1\|2199273_2200410_-\|SAP-domain-protein	unknown	unknown	gnl\|CDD\|366887
CP033506.1\|AYV00254.1\|2188065_2188776_+\|Purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP033506.1\|AYV00266.1\|2202341_2203124_-\|ABC-transporter,-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
CP033506.1\|AYV00261.1\|2194907_2195228_+\|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042

Protein	Function_ID	Function_description	E-value
CP033506.1\|AYV00267.1\|2203355_2205161_-\|Glutamine--fructose-6-phosphate-aminotransferase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP033506.1\|AYV00256.1\|2189539_2189953_-\|Hypothetical-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
CP033506.1\|AYV00262.1\|2195229_2196210_+\|Zn(II)-and-Co(II)-transmembrane-diffusion-facilitator	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.049e-108
CP033506.1\|AYV00265.1\|2201416_2202274_-\|Hydrolase,-HAD-superfamily	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	1.28483e-59
CP033506.1\|AYV00260.1\|2194090_2194756_-\|oxidoreductase-ylbE	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
CP033506.1\|AYV00270.1\|2209556_2209991_+\|PTS-system,-mannitol-specific-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
CP033506.1\|AYV00259.1\|2192717_2193656_-\|Mannose-6-phosphate-isomerase,-class-I	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
CP033506.1\|AYV00255.1\|2188896_2189340_-\|DNA-protection-during-starvation-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
CP033506.1\|AYV00273.1\|2214005_2218835_-\|FmtB-(Mrp)-protein-involved-in-methicillin-resistance-and-cell-wall-biosynthesis	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	1.88697e-111
CP033506.1\|AYV00272.1\|2211415_2213416_-\|FmtB-(Mrp)-protein-involved-in-methicillin-resistance-and-cell-wall-biosynthesis	gnl\|CDD\|336743	pfam07564, DUF1542, Domain of Unknown Function (DUF1542). This domain is found in several cell surface proteins. Some are involved in antibiotic resistance and/or cellular adhesion.	8.04055e-07
CP033506.1\|AYV00268.1\|2205841_2207095_+\|PTS-system,-mannitol-specific-IIC-component-/-PTS-system,-mannitol-specific-IIB-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
CP033506.1\|AYV00269.1\|2207412_2209545_+\|Mannitol-operon-activator,-BglG-family	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	9.36261e-68
CP033506.1\|AYV00257.1\|2190409_2191783_-\|Hypothetical-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
CP033506.1\|AYV00271.1\|2209990_2211097_+\|Mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
CP033506.1\|AYV00264.1\|2199273_2200410_-\|SAP-domain-protein	gnl\|CDD\|366887	pfam02037, SAP, SAP domain. The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.	4.78584e-06
CP033506.1\|AYV00254.1\|2188065_2188776_+\|Purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
CP033506.1\|AYV00266.1\|2202341_2203124_-\|ABC-transporter,-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	7.55858e-107
CP033506.1\|AYV00261.1\|2194907_2195228_+\|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17

>CP033506.1|AYV00263.1|2196475_2197567_+|Lytic-regulatory-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDKKVVTEPKNTKVENGKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>CP033506.1|AYV00262.1|2195229_2196210_+|Zn(II)-and-Co(II)-transmembrane-diffusion-facilitator
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>CP033506.1|AYV00261.1|2194907_2195228_+|Zn(II)-or-Co(II)-specific-transcriptional-repressor-protein
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP033506.1|AYV00260.1|2194090_2194756_-|oxidoreductase-ylbE
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>CP033506.1|AYV00259.1|2192717_2193656_-|Mannose-6-phosphate-isomerase,-class-I
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>CP033506.1|AYV00258.1|2192456_2192687_-|Hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP033506.1|AYV00257.1|2190409_2191783_-|Hypothetical-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>CP033506.1|AYV00256.1|2189539_2189953_-|Hypothetical-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>CP033506.1|AYV00255.1|2188896_2189340_-|DNA-protection-during-starvation-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP033506.1|AYV00254.1|2188065_2188776_+|Purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>CP033506.1|AYV00264.1|2199273_2200410_-|SAP-domain-protein
MSVNARDLLVLHTNVNRLVGEEIFANKCLANNDVQIMNSIKKLIEAELLTTTNDFEVSIFKKTRPELQSILKSFGIKTTGNKPDLIKRIDDNFHIINNLDLPYVYIPTKKGEEILKKTEYLTSFIQSYGEISLERAYYLVENYIDENCDDKVAEIYKFEFQRKYDNGEFDFNHGYNFELNMLIDHYKTDVKDYDNARKYSNVYLYFGLRDFLKKLMSNYSYYDSKGNIDLNEIQNDLNRFINSSASDLYERLIYNKNLSNNIIFELFKKDTQDYSDLEEQLIEKFINYVVSYVKKEGWSNTLLELSKMLENGYTIDKEEFKKEDEYLSRYIITDINYLKNLESKIGVAIDSRNGEIHLVLDDDSLDKLIKNQKNDNEV
>CP033506.1|AYV00265.1|2201416_2202274_-|Hydrolase,-HAD-superfamily
MDNVKAIFLDMDGTILHENNQASTYTKDVINRLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQIINLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIEHFGIHQDETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>CP033506.1|AYV00266.1|2202341_2203124_-|ABC-transporter,-ATP-binding-protein
MLIQLDQIGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATTGGVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQESERVIDVVISGAFKSIGVYQDIDDEVRNEAHHLLKLVGISAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLNILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>CP033506.1|AYV00267.1|2203355_2205161_-|Glutamine--fructose-6-phosphate-aminotransferase-(isomerizing)
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP033506.1|AYV00268.1|2205841_2207095_+|PTS-system,-mannitol-specific-IIC-component-/-PTS-system,-mannitol-specific-IIB-component
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKMLTQKKMLVVMLVKHLHQMMILKRYWIITTLKMLMHTITII
>CP033506.1|AYV00269.1|2207412_2209545_+|Mannitol-operon-activator,-BglG-family
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSSYLTVNPLLPDSDISYVAQFLNTKSTFQEMHDKSSNMIDKDDVHVETKDIDGNTSFENEQTSNLTSVFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRSKFLERIKKQFI
>CP033506.1|AYV00270.1|2209556_2209991_+|PTS-system,-mannitol-specific-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>CP033506.1|AYV00271.1|2209990_2211097_+|Mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>CP033506.1|AYV00272.1|2211415_2213416_-|FmtB-(Mrp)-protein-involved-in-methicillin-resistance-and-cell-wall-biosynthesis
MDNGDVDDALTQGKAAIDAIQVDATVKPKANQAIEVKAEDTKESIDQSDQLTAEEKTEALAMIKQITDQAKQGITDATTTAEVEKAKAQGLEAFDYIQIDSTEKQKAIEELETALDQIEAGVNVNADATTEEKEAFTNALEDILSKATEDISDQTTNAEIATVKNSALEQLKAQRINPEVKKNALEAIREVVNKQIEIIKNADADASAKEIARTDLGRYFDRFADKLDKTQTNAEVAELQNVTIPAIEAIVPQNDPDANDTNNGIDNNDATANSNANATPENTGQPNVSETTDNGKADASPTTPNNSDAATGETTATSATDDANDKPQANNNSSVDASTNSPTMDNDVTSKPEVESTNNGTTDKPVTETDNATPAESTTNNNSTTTATNENAPTGSTATAPTTASTEAASSADSKDNASVNDSKQNAEVNNSAESQSTNDKVAQPKSENKAKAEKDGRDSTNQSMVESTTETLPSADITEPNVPSNTSKDKEESTTNQTDAGQLKSETNVASNEADKSPSKAVTEVSNKPSTSASSEAKDKMTSTNVSQKDDTATADTNDTQKSVGSAANNKATQNDGANASPATVSNGSNSANQDMLNVTKPEENKAKAKSAQQGKVNKPKQQAKTLPDTGMSHNDDLPYAELALGAGMAFLIRRFTKKDQQTEE
>CP033506.1|AYV00273.1|2214005_2218835_-|FmtB-(Mrp)-protein-involved-in-methicillin-resistance-and-cell-wall-biosynthesis
MNLFRQQKFSIRKFNVGIFSALIATVTFISTNPTTASAAEQNQPAQNQPAQPADANTQPNANAGAQANPTAQPAAPANQGQPAVQPANQGGQANPAGGAAQPNTQPAGQGNQADPNNAAQAQPGNQATPANQAGQGNNQATPNNNATPANQTQPANAPAAPVAANAQTQDPNASNTGEGSINTTLTFDDPAISTDENRQDPTVTVTDKVNGYTLINNGKIGFVNSELRRSDMFDKNNPQNYQARGNVAALGRVNANDSTDHGNFNGISKTVNVKPDSELIINFTTMQTNSKQGATNLVIKDAKKNTELATVNVAKTGTAHLFKVPTDADRLDLQFIPDNTAVADASRITTNKDGYKYYSFIDNVGLFSGSHLYVKNRDLAPKATNNKEYTINTEIGNNGNFGASLKSDQFKYEVTLPQGVTYVNDSLTTTFPNGNEDSTVLKNMTVNYDQNANKVTFTSQGVTTARGTHTKEVLFPDKSLKLSYKVNVANIDTPKNIDFNEKLTYRTASDVVINNAQPEVTLTADPFSVAVEMNKDALQQQVNSQVDNSHYTTASIAEYNKLKQQADTILNEDANHVETANRASQADIDGLVTKLQAALIDNQAAIAELDAKAQEKVTAAQQSKKVTQDEVAALVTKINNDKNNAIAEINKQTTSQGVTTEKDNGIAVLEQDVITPTVKPQAKQDIIQAVTTRKQQIKKSNASLQDEKDVANDKIGKIETKAIKDIDAATTNAQVEAIKTKAINDINQTAPATTAKAAALEEFDEVVQAQIDQAPLNPDTTNEEVAEAIERINAAKVSGVKAIEATTTAQDLERVKNEEIFKIENITDSTQTKMDAYKEVKQAATARKAQNATVSNATDEEVAEANAAVDAAQTEGLHDIQVVKSQQEVADTKAKVLDKINAIQTQARVKPAADTEVENAYNTRKQEIQNSNASTTEEKEAAYTELDAKKQEARTNLDAANTNSAVTTAKDNSIAAINQVQAATTKKSDAKAEIAQKASERKTAIEAMNASTTEEQQAAKEKVDQAVLSANADIDNAAANTDVDNVKTTNEATIAAITPDANVKPTAKQAIADKVQAQETAIDANNGATTEEKAAAKQQVQTEKTTADTAIDGAHSNAEVEAAKNAEIAKIEAIQPATTTKDDAKQAIATKANERKTAIAQTQDITAEEIAAANVNVDNAVTEANSNIEAANSQNDVDQAKTTGENSIDQVTPTVNKKATARNEITAILNNKLQEIQATPDATDEEKQAADAEANTENGKANQAISAATTNAQVDEAKANAEAAINAVTPKVVKKKAAKDEIDQLQATQTNVINNDQNATTEEKEAAIQQLATAVTDAKNNITAATDDNGVDQAKDAGKNSIQSTQPATAVKSNAKNDVDQAVTTQNQAIDNTTGATTEEKNAAKDLVLKAKEKAYQDILNAQTTNDVTQIKDQAVADIQGITADTTIKDVAKDELATKANEQKALIAQTADATTEEKEQANQQVDAQLTQGNQNIENAQSIDDVNTAKDNAIQAIDPIQASTDVKTNARAELLTEMQNKITEILNNNETTNEEKGNDIGPVRAAYEEGLNNINAATTTGDVTTAKDTAVQKVQQLHANPVKKPAGKKN

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Crispr_ID: CP033506_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033506_11

2636884-2636965

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033506_11

>merge|CP033506|11|2636884-2636965|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTGCCAATTTCTACAGACAATGCAAGTTGGGG

>CP033506|11|9|2636884-2636965|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACAAAGAGAAATTGGATTGCCAAT
TTCTACAGACAATGCAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP033506.1\|AYV00645.1\|2635896_2636097_+\|hypothetical-protein	unknown	unknown	unknown
CP033506.1\|AYV00655.1\|2644432_2645500_-\|putative-monooxygenase	unknown	unknown	gnl\|CDD\|379355
CP033506.1\|AYV00647.1\|2637066_2638281_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187561
CP033506.1\|AYV00649.1\|2638728_2639286_+\|Transcriptional-regulator,-AcrR-family	unknown	unknown	gnl\|CDD\|224228
CP033506.1\|AYV00652.1\|2641097_2641928_+\|putative-hydrolase/acyltransferase	unknown	unknown	gnl\|CDD\|223669
CP033506.1\|AYV00644.1\|2634931_2635519_+\|Transcriptional-regulator,-AcrR-family	unknown	unknown	gnl\|CDD\|224228
CP033506.1\|AYV00643.1\|2634685_2634889_+\|hypothetical-protein	unknown	unknown	unknown
CP033506.1\|AYV00656.1\|2645794_2646091_-\|Repetitive-hypothetical-protein-in-ESAT-cluster	unknown	unknown	gnl\|CDD\|226892
CP033506.1\|AYV00653.1\|2642031_2642964_-\|Metal-chaperone,-involved-in-Zn-homeostasis	unknown	unknown	gnl\|CDD\|223597
CP033506.1\|AYV00646.1\|2636435_2636666_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226677
CP033506.1\|AYV00637.1\|2625925_2627095_-\|Diapolycopene-oxygenase	unknown	unknown	gnl\|CDD\|224154
CP033506.1\|AYV00650.1\|2639278_2639983_+\|Short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|187585
CP033506.1\|AYV00651.1\|2640247_2641078_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225070
CP033506.1\|AYV00642.1\|2633484_2634540_-\|Membrane-protein	unknown	unknown	gnl\|CDD\|226167
CP033506.1\|AYV00648.1\|2638299_2638518_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226806
CP033506.1\|AYV00641.1\|2632175_2632877_-\|immunodominant-antigen-A-precursor	unknown	unknown	gnl\|CDD\|381607
CP033506.1\|AYV00639.1\|2627970_2628738_-\|Secretory-antigen-precursor-SsaA	unknown	unknown	gnl\|CDD\|226451
CP033506.1\|AYV00654.1\|2643060_2644407_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223447
CP033506.1\|AYV00640.1\|2629095_2630907_-\|Acyltransferase	unknown	unknown	gnl\|CDD\|224748
CP033506.1\|AYV00638.1\|2627308_2627761_-\|Glycosyl-4,4'-diaponeurosporenoate-acyltransferase-precursor	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP033506.1\|AYV00655.1\|2644432_2645500_-\|putative-monooxygenase	gnl\|CDD\|379355	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase.	6.39392e-125
CP033506.1\|AYV00640.1\|2629095_2630907_-\|Acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	6.58134e-84
CP033506.1\|AYV00652.1\|2641097_2641928_+\|putative-hydrolase/acyltransferase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.54673e-18
CP033506.1\|AYV00644.1\|2634931_2635519_+\|Transcriptional-regulator,-AcrR-family	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.60542e-07
CP033506.1\|AYV00646.1\|2636435_2636666_+\|hypothetical-protein	gnl\|CDD\|226677	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown].	6.01061e-31
CP033506.1\|AYV00653.1\|2642031_2642964_-\|Metal-chaperone,-involved-in-Zn-homeostasis	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	3.51471e-73
CP033506.1\|AYV00649.1\|2638728_2639286_+\|Transcriptional-regulator,-AcrR-family	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.50396e-13
CP033506.1\|AYV00637.1\|2625925_2627095_-\|Diapolycopene-oxygenase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	9.70479e-82
CP033506.1\|AYV00650.1\|2639278_2639983_+\|Short-chain-dehydrogenase	gnl\|CDD\|187585	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs. PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.08524e-67
CP033506.1\|AYV00651.1\|2640247_2641078_+\|hypothetical-protein	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	8.15054e-70
CP033506.1\|AYV00642.1\|2633484_2634540_-\|Membrane-protein	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	5.38046e-117
CP033506.1\|AYV00648.1\|2638299_2638518_-\|hypothetical-protein	gnl\|CDD\|226806	COG4367, COG4367, Uncharacterized protein conserved in bacteria [Function unknown].	2.20592e-25
CP033506.1\|AYV00641.1\|2632175_2632877_-\|immunodominant-antigen-A-precursor	gnl\|CDD\|381607	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF.	3.60255e-06
CP033506.1\|AYV00639.1\|2627970_2628738_-\|Secretory-antigen-precursor-SsaA	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.0489e-31
CP033506.1\|AYV00654.1\|2643060_2644407_-\|hypothetical-protein	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	1.44208e-93
CP033506.1\|AYV00647.1\|2637066_2638281_-\|hypothetical-protein	gnl\|CDD\|187561	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs. NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.80446e-82
CP033506.1\|AYV00656.1\|2645794_2646091_-\|Repetitive-hypothetical-protein-in-ESAT-cluster	gnl\|CDD\|226892	COG4495, COG4495, Uncharacterized protein conserved in bacteria [Function unknown].	5.38415e-36

>CP033506.1|AYV00646.1|2636435_2636666_+|hypothetical-protein
MKILDRINELANKEKVQPLTVAEKQEQHALRQDYLSMIRGQVLTTFSTIKVVDPIGQDVTPDKVYDLRQQYGYIQN
>CP033506.1|AYV00645.1|2635896_2636097_+|hypothetical-protein
MSETDEPQGFERTHNILNINQSSLGVVTYITNKLKSTLKQHIIIARGKSESTIDCRITFTLRIMIM
>CP033506.1|AYV00644.1|2634931_2635519_+|Transcriptional-regulator,-AcrR-family
MLGSEQMMESKSIDPRIVRTKQLLVDAFLKISREKKLSQITVKDITDIATLNRATFYAHFTDKEDLLDYTLSVTILKDLNDNLSISNVINEKVLRNIFISIASYIKDAAKSCELNSEAFCNKAHQRINNELEDIFAIMLENSYPEHQRDIIVNSASFLAAGISGLALHWFNTSQETADVFIDRNLPFLIHHIAHF
>CP033506.1|AYV00643.1|2634685_2634889_+|hypothetical-protein
MKNSISQNSEFLDKEIGNFSNILLQYTFILSSFLKSINIIEERHSNAYQKGTLFVRSVSALTYHQHN
>CP033506.1|AYV00642.1|2633484_2634540_-|Membrane-protein
MTSIKTITPKDFIFRVLSGVAIGIVAGLVPNAILGEIFKYFMDYHPIFKTLLGVVVAIQFTVPALIGALVAMKFDLSPLAIAVVASAAYVGSGAAQFKNGAWMITGIGDLINTMITAAIAVLFILLIQHRVGSMALIVFPTVVGGISGAIGVLILPYTKMITTAIGNMVNGFTELQPIVMSILISMVFSLIIISPLSTVAIAFAIGITGLAAGSASIGISATEAVLIIGTSKVNRLGVPLSVFFGGVKMMIPNMVKYPILMLPILTTAIVSGLVSALVGIHGTKESAGFGFIGMVGPINAFKFMEVDSAWLSVLLIVVAFFVVPFVTAWLADIIYRKVFRLYTNDIFKFMG
>CP033506.1|AYV00641.1|2632175_2632877_-|immunodominant-antigen-A-precursor
MKKTIMASSLAVALGVTGYAAGTGHQAHAAEVNVDQAHLVDLAHNHQDQLNAAPIKDGAYDIHFVKDGFQYNFTSNGTTWSWSYEAANGQTAGFSNVAGADYTTSYNQGSNVQSVSYNAQSSNSNVEAVSAPTYHNYSTSTTSSSVRLSNGNTAGATGSSAAQIMAQRTGVSASTWAAIIARESNGQVNAYNPSGASGLFQTMPGWGPTNTVDQQINAAVKAYKAQGLGAWGF
>CP033506.1|AYV00640.1|2629095_2630907_-|Acyltransferase
MDTKDFKRLEKMYSPRYLPGLDGLRAFAVIGIIIYHLNAQWLSGGFLGVDTFFVISGYLITSLLISEYYRTQKIDLLEFWKRRLKRLIPAVLFLICVVLTFTLIFKPELIIQMKRDAIAAIFYVSNWWYISQNVDYFNQFAIEPLKHLWSLAIEEQFYLLFPLVITFLLHRFKPRNIIQTLFIVSLISLGLMIVIHFITGDNSRVYFGTDTRLQTLLLGCILAFIWPPFALKKDISKKIVVSLDIIGISGFAVLMTLFFIVGDQDQWIYNGGFYIISFATLFIIAIAVHPSSLFAKFLSMKPLLIIGKRSYSLYLWHYPIIVFVNSYYVQGQIPVYVYIIEILLTALMAEISYRFIETPIRKKGFKAFAFLPKKKGQFARTVLVILLLVPSIVVLSGQFDALGKQHEAEKKEKKTEFKTTKKKVVKKDKQEDKQTANSKEDIKKSSPLLIGDSVMVDIGNVFTKKIPNAQIDGKVGRQLVDATPIVKSQYKDYAKKGQKVVVELGTNGAFTKDQLNELLDSFGKADIYLVSIRVPRDYEGRINKLIYEAAEKRSNVHLVDWYKASAGHPEYFAYDGIHLEYAGSKALTDLIVKTMETHATNKK
>CP033506.1|AYV00639.1|2627970_2628738_-|Secretory-antigen-precursor-SsaA
MKKIVTATIATAGLATIAFAGHDAQAVEQNNNGYNSNDAQSYSYTYTIDAQGNYHYTWTGNWNPSQLTQNNTYYYNNYNTYSYNNASYNNYYNHSYQYNNYTNNSQTATNNYYTGGSGASYSTTSNNVHVTTTAAPSSNGRSISNGYASGSNLYTSGQCTYYVFDRVGGKIGSTWGNASNWANAAASSGYTVNNTPKVGAIMQTTQGYYGHVAYVEGVNSNGSVRVSEMNYGHGAGVVTSRTISANQAGSYNFIH
>CP033506.1|AYV00638.1|2627308_2627761_-|Glycosyl-4,4'-diaponeurosporenoate-acyltransferase-precursor
MYWLIVQLNIANLGTRIPDKYFRQKYIIFKSFNFEKHGKFWNKWFYVRKWKHKILDGHQLNQNIYDQRHLMTINTDEIEKMIIETKRAELIHWISILPVIIFNKGPRLVKYINIFYAMIANVPIIIVQRYNRPRLTQLLRILKRRGERHD
>CP033506.1|AYV00637.1|2625925_2627095_-|Diapolycopene-oxygenase
MSDYVTIKRLPHQWRSFFPDGTTIDLYEGIKETGQHNAILSKQDIEELQNYLNYTRRIDRITEKGYFNYGLDTLSQIIKFHGPLNALINYDYVHTMQQAIDKRISNPYLRQMLGYFIKYVGSSSYDAPAVLSMLFHMQQEQGLWYVEGGIHHLANALEKLAREEGVTIHTGARVDNIKTYQRRVTGVRLDTGEFVKADYIISNMEVIPTYKYLLHLDTQRLNKLEREFEPASSGYVMHLGVACQYPQLAHHNFFFTENAYLNYQQVFHEKVLPDDPTIYLVNTNKTDHTQAPVGYENIKVLPHIPYIQDQPFTTEDYAKFRDKILDKLEKMGLTDLRKHIIYEDVWTPEDIEKNYRSNRGAIYGVVADKRKTKDLNFLKKVSILKTCTL
>CP033506.1|AYV00647.1|2637066_2638281_-|hypothetical-protein
MKDILVIGATGKQGNAVVKQLLEDGWYVSALTRNKNNRKLSDIGHPHLSIVEGDLSDNVSLQSAMKGKYGLYSIQPIVKDDVSEELRQGMKIIEIAEQENIQHIVYSTAGGVNRNRTGPHFEVLAKIENRLMESNINATVIKPSFFMDNFLRIAKVEDERITLPEFINPNIKFTMISSIDIAKIASYIFAHPQSFTHQSIEIGSDEVTLSEAATIFSEVTGKSTVIEGEFVSGVAEKQWLEEKGYEVDFELMAEINPTRLSLSDWLKVQTIISNEWGAIMIQSMWFNLHVQDLEKSAQFYKALGFKINRNPQMLDKMVGIQIGQTTVILIENKHFQNVSQQSLNTEPNEVMISLGVNTNEEVDQLVNKVKEAGGAVVQEPTVSQGFYGAMFKDLDGHHFNFLVC
>CP033506.1|AYV00648.1|2638299_2638518_-|hypothetical-protein
MIAEKLNVTTEDVEKVLAMTAPLGIFSHQLQRFIHLVWDVRDVINDNIKGNGQTPEPYTYLKGEKEDYWFLR
>CP033506.1|AYV00649.1|2638728_2639286_+|Transcriptional-regulator,-AcrR-family
MRKDAIENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIFITHFKQIKDDYHSNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAFYQELFDFYYDLFKSDDDTYTKFKTDMLLQSLSTSVFAFQIEHRHISIEAYRNYLLNIYLDEVERND
>CP033506.1|AYV00650.1|2639278_2639983_+|Short-chain-dehydrogenase
MTKIVLITGGNKGLGYASAEALKALGYKVYIGSRNDVRGQQASQKLGVHYVQLDVTSDYSVKNAYNMIAEKEGRLDILINNAGISGQFSAPSKLTPRDVEEVYQTNVFGIVRMMNTFVPLLEKSEQPVVVNVSSGLGSFGMVTNPETAESKVNSLAYCSSKSAVTMLTLQYAKGLPNMQINAADPGATNTDLVGDFSNNSKHVSEGIKPIIQLATIGADGPTGTFINGDGEMPW
>CP033506.1|AYV00651.1|2640247_2641078_+|hypothetical-protein
MNNQDVQIQVLSYGNGSPSNLVGQKAIELCQKANDQLANYIAQYPNRFVGFATLPINEPEAAAREFERCINDLGFKGALIMGRAQDGFLDQDKYDIIFKTAENLGVPIYLHPAPVNSDIYQSYYKGNYPEVTAATFACFGYGWHIDVGIHAIHLVLSGIFDRYPKLNMIIGHWGEFIPFFLERMDEALFAEHLNHPVSYYFKNNFYITPSGMLTKPQFDLVKKEVGIDRILYAADYPYIEPEKLGVFLDELGLTDEEKEKISYTNGAKLLGLSSNN
>CP033506.1|AYV00652.1|2641097_2641928_+|putative-hydrolase/acyltransferase
METLELQGAKLRYHQVGQGPVLIFIPGANGTGDIFLPLAEQLKDHFTVVAVDRRDYGESELTEPIPDSASNPDSDYRVKRDAQDIAELAKSLSDEPVYILGSSSGSIVAMHVLKDYPEVVKKIAFHEPPINTFLPDSTYWKDKNDYIVHQILTEGLEKGMKTFGETLNIAPIDAKMMSQPADTEEGRIEQYKRTMFWSKFEIRQYTHSDITLDDFTKYSDKITLLNGTDSRGSFPQDVNFYINKETGIPIVDIPGGHLGYIQKPEGFADVLLNLWG
>CP033506.1|AYV00653.1|2642031_2642964_-|Metal-chaperone,-involved-in-Zn-homeostasis
MKIVIIGGFLGGGKTTVLNHLLAESLKESLKPAVIMNEFGKMSVDGALVSEDIPLSELTEGCICCAMKADVSEQLHQLYLKEQPDIVFIECSGIAEPVSVLDACLTPILAPFTTITHMIGVIDASMYKHIKSFPKDIQGLFYEQLAYCSVLFVNKIDSADVETTSKLLKDLEVINPEADIQVGMHGSVTLPISVRQMTATSDNKHKSLHQMINHQFVQSPVKCTKAEFIKRLACLPSHIYRLKGFMTFEDTAHTYLIQFTQGQYELTPVAFSKKCQNIWCLSERVFQKKTINVWNSSVFSGREWLTCLHV
>CP033506.1|AYV00654.1|2643060_2644407_-|hypothetical-protein
MHMLEVKYDMRTGHYTPIPNEPHYLVISHADKLTATEKAKLRLLIIKQKLDISLAESVVSSPIASEHVIEQLTLFQHERRHLRPKISATFLAWLLIFLMFALPIGIAYQFSDWFQNQYVSAWIEYLTQTTLLNHDILQHILFGDYGVLSLGTYSLVWALPVVILISLSTAIIDQTGLKSWMIWAIEPSMLRIGLQGNDIVPLLEGFGCNAAAISQAAHQCHTCTKTQCMSLISFGSSCSYQIGATLSIFSVAGKSWLFMPYLILVLLGGILHNRIWLKKNDQQLSVPLPYDRQLHMPNIRQMLLQMWQNIQMFIVQALPIFITICLIVSILSLTPILNVLSQIFTPILSLLGISSELSPGILFSMIRKDGMLLFNLHQGALLQGMTATQLLLLVFFSSTFTACSVTMTMLLKHLGGQSALKLIGKQMVTSLSLVIGVGIIVKIVMLII
>CP033506.1|AYV00655.1|2644432_2645500_-|putative-monooxygenase
MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTLTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISVDDAFYTIATTTETYHADYIFVATGDYNFPKKPFKYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQREGLPAKQEVIENYQKIKCI
>CP033506.1|AYV00656.1|2645794_2646091_-|Repetitive-hypothetical-protein-in-ESAT-cluster
METIGSIIYLKEGSQKLMIINRGPIVEIENQKYMFDYSACKYPIGVVEDEIYYFNEENIDSVIFKGYSDQDEVRFQELFENMKQNLDSEIQRGEVTPQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP033506_1	1.1\|172016\|34\|CP033506\|CRISPRCasFinder	172016-172049	34	CP033506.1	1455421-1455454	0	1.0
CP033506_5	5.1\|822778\|33\|CP033506\|CRISPRCasFinder	822778-822810	33	CP033506.1	1963019-1963051	0	1.0
CP033506_7	7.2\|1148628\|37\|CP033506\|CRT	1148628-1148664	37	CP033506.1	374706-374742	0	1.0
CP033506_7	7.2\|1148628\|37\|CP033506\|CRT	1148628-1148664	37	CP033506.1	829962-829998	0	1.0
CP033506_7	7.2\|1148628\|37\|CP033506\|CRT	1148628-1148664	37	CP033506.1	1046277-1046313	0	1.0
CP033506_7	7.2\|1148628\|37\|CP033506\|CRT	1148628-1148664	37	CP033506.1	1637723-1637759	0	1.0
CP033506_7	7.2\|1148628\|37\|CP033506\|CRT	1148628-1148664	37	CP033506.1	1961653-1961689	0	1.0
CP033506_7	7.2\|1148628\|37\|CP033506\|CRT	1148628-1148664	37	CP033506.1	2348561-2348597	0	1.0
CP033506_7	7.3\|1148684\|37\|CP033506\|CRT	1148684-1148720	37	CP033506.1	775896-775932	0	1.0
CP033506_7	7.3\|1148684\|37\|CP033506\|CRT	1148684-1148720	37	CP033506.1	1455401-1455437	0	1.0
CP033506_7	7.3\|1148684\|37\|CP033506\|CRT	1148684-1148720	37	CP033506.1	1500393-1500429	0	1.0
CP033506_7	7.3\|1148684\|37\|CP033506\|CRT	1148684-1148720	37	CP033506.1	1500449-1500485	0	1.0
CP033506_7	7.3\|1148684\|37\|CP033506\|CRT	1148684-1148720	37	CP033506.1	1963054-1963090	0	1.0
CP033506_7	7.3\|1148684\|37\|CP033506\|CRT	1148684-1148720	37	CP033506.1	1963113-1963149	0	1.0
CP033506_7	7.3\|1148684\|37\|CP033506\|CRT	1148684-1148720	37	CP033506.1	2348616-2348652	0	1.0
CP033506_7	7.3\|1148684\|37\|CP033506\|CRT	1148684-1148720	37	CP033506.1	2751271-2751307	0	1.0
CP033506_2	2.1\|295051\|35\|CP033506\|CRISPRCasFinder	295051-295085	35	CP033506.1	866251-866285	1	0.971
CP033506_2	2.1\|295051\|35\|CP033506\|CRISPRCasFinder	295051-295085	35	CP033506.1	866306-866340	1	0.971
CP033506_2	2.1\|295051\|35\|CP033506\|CRISPRCasFinder	295051-295085	35	CP033506.1	1232998-1233032	1	0.971
CP033506_2	2.1\|295051\|35\|CP033506\|CRISPRCasFinder	295051-295085	35	CP033506.1	2314310-2314344	1	0.971
CP033506_2	2.1\|295051\|35\|CP033506\|CRISPRCasFinder	295051-295085	35	CP033506.1	2478768-2478802	1	0.971
CP033506_2	2.1\|295051\|35\|CP033506\|CRISPRCasFinder	295051-295085	35	CP033506.1	2751155-2751189	1	0.971
CP033506_6	6.1\|865893\|34\|CP033506\|CRISPRCasFinder	865893-865926	34	CP033506.1	1455421-1455454	1	0.971
CP033506_7	7.1\|1148572\|37\|CP033506\|CRT	1148572-1148608	37	CP033506.1	1367184-1367220	1	0.973
CP033506_7	7.1\|1148572\|37\|CP033506\|CRT	1148572-1148608	37	CP033506.1	2504086-2504122	1	0.973
CP033506_7	7.2\|1148628\|37\|CP033506\|CRT	1148628-1148664	37	CP033506.1	1455459-1455495	1	0.973
CP033506_7	7.2\|1148628\|37\|CP033506\|CRT	1148628-1148664	37	CP033506.1	2314314-2314350	1	0.973
CP033506_7	7.2\|1148628\|37\|CP033506\|CRT	1148628-1148664	37	CP033506.1	2586315-2586351	1	0.973
CP033506_7	7.3\|1148684\|37\|CP033506\|CRT	1148684-1148720	37	CP033506.1	822813-822849	1	0.973
CP033506_7	7.3\|1148684\|37\|CP033506\|CRT	1148684-1148720	37	CP033506.1	1232936-1232972	1	0.973
CP033506_7	7.3\|1148684\|37\|CP033506\|CRT	1148684-1148720	37	CP033506.1	2586259-2586295	1	0.973
CP033506_7	7.3\|1148684\|37\|CP033506\|CRT	1148684-1148720	37	CP033506.1	2751215-2751251	1	0.973
CP033506_11	11.1\|2636908\|34\|CP033506\|CRISPRCasFinder	2636908-2636941	34	CP033506.1	1455421-1455454	1	0.971
CP033506_2	2.1\|295051\|35\|CP033506\|CRISPRCasFinder	295051-295085	35	CP033506.1	785453-785487	2	0.943
CP033506_2	2.1\|295051\|35\|CP033506\|CRISPRCasFinder	295051-295085	35	CP033506.1	1144673-1144707	2	0.943
CP033506_2	2.1\|295051\|35\|CP033506\|CRISPRCasFinder	295051-295085	35	CP033506.1	2348567-2348601	2	0.943
CP033506_5	5.1\|822778\|33\|CP033506\|CRISPRCasFinder	822778-822810	33	CP033506.1	1961618-1961650	2	0.939
CP033506_7	7.1\|1148572\|37\|CP033506\|CRT	1148572-1148608	37	CP033506.1	171976-172012	2	0.946
CP033506_7	7.1\|1148572\|37\|CP033506\|CRT	1148572-1148608	37	CP033506.1	817321-817357	2	0.946
CP033506_7	7.1\|1148572\|37\|CP033506\|CRT	1148572-1148608	37	CP033506.1	865930-865966	2	0.946
CP033506_7	7.1\|1148572\|37\|CP033506\|CRT	1148572-1148608	37	CP033506.1	930156-930192	2	0.946
CP033506_7	7.1\|1148572\|37\|CP033506\|CRT	1148572-1148608	37	CP033506.1	1637665-1637701	2	0.946
CP033506_7	7.1\|1148572\|37\|CP033506\|CRT	1148572-1148608	37	CP033506.1	1961594-1961630	2	0.946
CP033506_7	7.1\|1148572\|37\|CP033506\|CRT	1148572-1148608	37	CP033506.1	1972397-1972433	2	0.946
CP033506_7	7.1\|1148572\|37\|CP033506\|CRT	1148572-1148608	37	CP033506.1	2636868-2636904	2	0.946
CP033506_7	7.2\|1148628\|37\|CP033506\|CRT	1148628-1148664	37	CP033506.1	866199-866235	2	0.946
CP033506_7	7.2\|1148628\|37\|CP033506\|CRT	1148628-1148664	37	CP033506.1	866255-866291	2	0.946
CP033506_7	7.2\|1148628\|37\|CP033506\|CRT	1148628-1148664	37	CP033506.1	866310-866346	2	0.946
CP033506_7	7.2\|1148628\|37\|CP033506\|CRT	1148628-1148664	37	CP033506.1	1148740-1148776	2	0.946
CP033506_7	7.2\|1148628\|37\|CP033506\|CRT	1148628-1148664	37	CP033506.1	1232992-1233028	2	0.946
CP033506_7	7.2\|1148628\|37\|CP033506\|CRT	1148628-1148664	37	CP033506.1	1233048-1233084	2	0.946
CP033506_7	7.2\|1148628\|37\|CP033506\|CRT	1148628-1148664	37	CP033506.1	2478772-2478808	2	0.946

1. spacer 1.1|172016|34|CP033506|CRISPRCasFinder matches to position: 1455421-1455454, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

2. spacer 5.1|822778|33|CP033506|CRISPRCasFinder matches to position: 1963019-1963051, mismatch: 0, identity: 1.0

cttttcgaaattctctgtgttggggcccacacc	CRISPR spacer
cttttcgaaattctctgtgttggggcccacacc	Protospacer
*********************************

3. spacer 7.2|1148628|37|CP033506|CRT matches to position: 374706-374742, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

4. spacer 7.2|1148628|37|CP033506|CRT matches to position: 829962-829998, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

5. spacer 7.2|1148628|37|CP033506|CRT matches to position: 1046277-1046313, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

6. spacer 7.2|1148628|37|CP033506|CRT matches to position: 1637723-1637759, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

7. spacer 7.2|1148628|37|CP033506|CRT matches to position: 1961653-1961689, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

8. spacer 7.2|1148628|37|CP033506|CRT matches to position: 2348561-2348597, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

9. spacer 7.3|1148684|37|CP033506|CRT matches to position: 775896-775932, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

10. spacer 7.3|1148684|37|CP033506|CRT matches to position: 1455401-1455437, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

11. spacer 7.3|1148684|37|CP033506|CRT matches to position: 1500393-1500429, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

12. spacer 7.3|1148684|37|CP033506|CRT matches to position: 1500449-1500485, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

13. spacer 7.3|1148684|37|CP033506|CRT matches to position: 1963054-1963090, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

14. spacer 7.3|1148684|37|CP033506|CRT matches to position: 1963113-1963149, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

15. spacer 7.3|1148684|37|CP033506|CRT matches to position: 2348616-2348652, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

16. spacer 7.3|1148684|37|CP033506|CRT matches to position: 2751271-2751307, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

17. spacer 2.1|295051|35|CP033506|CRISPRCasFinder matches to position: 866251-866285, mismatch: 1, identity: 0.971

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cggaaagtcagcttacaataatgtgcaagttggcg	Protospacer
************ **********************

18. spacer 2.1|295051|35|CP033506|CRISPRCasFinder matches to position: 866306-866340, mismatch: 1, identity: 0.971

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cggaaagtcagcttacaataatgtgcaagttggcg	Protospacer
************ **********************

19. spacer 2.1|295051|35|CP033506|CRISPRCasFinder matches to position: 1232998-1233032, mismatch: 1, identity: 0.971

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cggaaagtcagcttacaataatgtgcaagttggcg	Protospacer
************ **********************

20. spacer 2.1|295051|35|CP033506|CRISPRCasFinder matches to position: 2314310-2314344, mismatch: 1, identity: 0.971

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cgaaaagtcagcatacaataatgtgcaagttggcg	Protospacer
**.********************************

21. spacer 2.1|295051|35|CP033506|CRISPRCasFinder matches to position: 2478768-2478802, mismatch: 1, identity: 0.971

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cggaaagtcagcttacaataatgtgcaagttggcg	Protospacer
************ **********************

22. spacer 2.1|295051|35|CP033506|CRISPRCasFinder matches to position: 2751155-2751189, mismatch: 1, identity: 0.971

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cggaaagtcagcctacaataatgtgcaagttggcg	Protospacer
************ **********************

23. spacer 6.1|865893|34|CP033506|CRISPRCasFinder matches to position: 1455421-1455454, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

24. spacer 7.1|1148572|37|CP033506|CRT matches to position: 1367184-1367220, mismatch: 1, identity: 0.973

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacagacaatgcaagttg	Protospacer
*******.*****************************

25. spacer 7.1|1148572|37|CP033506|CRT matches to position: 2504086-2504122, mismatch: 1, identity: 0.973

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcaaaaagaaattctacagacaatgtaagttg	Protospacer
******************************.******

26. spacer 7.2|1148628|37|CP033506|CRT matches to position: 1455459-1455495, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agatgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
** **********************************

27. spacer 7.2|1148628|37|CP033506|CRT matches to position: 2314314-2314350, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcatacaataatgtgcaagtt	Protospacer
****************** ******************

28. spacer 7.2|1148628|37|CP033506|CRT matches to position: 2586315-2586351, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaaatcagcttacaataatgtgcaagtt	Protospacer
************.************************

29. spacer 7.3|1148684|37|CP033506|CRT matches to position: 822813-822849, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggatttccaatttctacagacaatgcaagtt	Protospacer
***********.*************************

30. spacer 7.3|1148684|37|CP033506|CRT matches to position: 1232936-1232972, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaagttggattcccaatttctacagacaatgcaagtt	Protospacer
***.*********************************

31. spacer 7.3|1148684|37|CP033506|CRT matches to position: 2586259-2586295, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgtaagtt	Protospacer
*******************************.*****

32. spacer 7.3|1148684|37|CP033506|CRT matches to position: 2751215-2751251, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccgatttctacagacaatgcaagtt	Protospacer
**************.**********************

33. spacer 11.1|2636908|34|CP033506|CRISPRCasFinder matches to position: 1455421-1455454, mismatch: 1, identity: 0.971

atgggccccaacaaagagaaattggattgccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**************************** *****

34. spacer 2.1|295051|35|CP033506|CRISPRCasFinder matches to position: 785453-785487, mismatch: 2, identity: 0.943

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cggaaagtcagctaacaataatgtgcaagttggcg	Protospacer
************  *********************

35. spacer 2.1|295051|35|CP033506|CRISPRCasFinder matches to position: 1144673-1144707, mismatch: 2, identity: 0.943

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cgaaaagtcagcatacaaaaatgtgcaagttggcg	Protospacer
**.*************** ****************

36. spacer 2.1|295051|35|CP033506|CRISPRCasFinder matches to position: 2348567-2348601, mismatch: 2, identity: 0.943

cggaaagtcagcatacaataatgtgcaagttggcg	CRISPR spacer
cgaaaagtcagcttacaataatgtgcaagttggcg	Protospacer
**.********* **********************

37. spacer 5.1|822778|33|CP033506|CRISPRCasFinder matches to position: 1961618-1961650, mismatch: 2, identity: 0.939

cttttcgaaattctctgtgttggggcccacacc	CRISPR spacer
ctttttgaaattctctatgttggggcccacacc	Protospacer
*****.**********.****************

38. spacer 7.1|1148572|37|CP033506|CRT matches to position: 171976-172012, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

39. spacer 7.1|1148572|37|CP033506|CRT matches to position: 817321-817357, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaaacaatgcaagttg	Protospacer
*******.***************.*************

40. spacer 7.1|1148572|37|CP033506|CRT matches to position: 865930-865966, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

41. spacer 7.1|1148572|37|CP033506|CRT matches to position: 930156-930192, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

42. spacer 7.1|1148572|37|CP033506|CRT matches to position: 1637665-1637701, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

43. spacer 7.1|1148572|37|CP033506|CRT matches to position: 1961594-1961630, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcaaaaagaaattctacaggcaatgcaggttg	Protospacer
************************.*******.****

44. spacer 7.1|1148572|37|CP033506|CRT matches to position: 1972397-1972433, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaggaaattctacagacaatgcaagttg	Protospacer
*******.***.*************************

45. spacer 7.1|1148572|37|CP033506|CRT matches to position: 2636868-2636904, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

46. spacer 7.2|1148628|37|CP033506|CRT matches to position: 866199-866235, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

47. spacer 7.2|1148628|37|CP033506|CRT matches to position: 866255-866291, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

48. spacer 7.2|1148628|37|CP033506|CRT matches to position: 866310-866346, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

49. spacer 7.2|1148628|37|CP033506|CRT matches to position: 1148740-1148776, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

50. spacer 7.2|1148628|37|CP033506|CRT matches to position: 1232992-1233028, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

51. spacer 7.2|1148628|37|CP033506|CRT matches to position: 1233048-1233084, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

52. spacer 7.2|1148628|37|CP033506|CRT matches to position: 2478772-2478808, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

773864 : 788588

uncultured_Caudovirales_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU99032.1\|773864_774773_+	Biosynthetic Aromatic amino acid aminotransferase beta	A0A0H3TLT9	Faustovirus	4.4e-21	27.2
AYU99033.1\|775216_775759_+	Putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AYU99034.1\|776437_777355_-	Transcription regulator (contains diacylglycerol kinase catalytic domain)	A0A1V0SBJ0	Catovirus	2.1e-07	22.0
AYU99035.1\|777622_779128_-	Di-tripeptide/cation symporter DtpT	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AYU99036.1\|779468_779969_-	NADPH-dependent 7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AYU99037.1\|779988_780855_-	Permease of the drug/metabolite transporter (DMT) superfamily	NA	NA	NA	NA
AYU99038.1\|781653_782052_+	Ribonucleotide reduction protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AYU99039.1\|782014_784120_+	Ribonucleotide reductase of class Ib (aerobic), alpha subunit	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AYU99040.1\|784237_785209_+	Ribonucleotide reductase of class Ib (aerobic), beta subunit	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AYU99041.1\|785873_786887_+	Iron compound ABC uptake transporter permease protein	A0A2H4IY97	uncultured_Caudovirales_phage	2.2e-138	78.0
AYU99042.1\|786873_787830_+	Iron compound ABC uptake transporter permease protein	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AYU99043.1\|787826_788588_+	Iron compound ABC uptake transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.5e-18	31.6

DBSCAN-SWA_2

870587 : 887950

Staphylococcus_phage(81.25%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU99119.1\|870587_871505_-	Integrase, superantigen-encoding pathogenicity islands SaPI	M1RZA8	Staphylococcus_phage	4.3e-64	47.4
AYU99120.1\|871592_872321_-	Exotoxin, phage associated	A0EX09	Staphylococcus_phage	1.6e-21	31.8
AYU99121.1\|872640_873072_-	Exotoxin, phage associated	A0EX09	Staphylococcus_phage	7.0e-09	32.8
AYU99122.1\|873246_873981_-	hypothetical protein	Q4ZE79	Staphylococcus_phage	8.5e-132	98.4
AYU99123.1\|875485_876448_+	hypothetical protein	A0A1W6JQL5	Staphylococcus_phage	3.1e-134	93.9
AYU99124.1\|876525_877704_+	protein VirE in pathogenicity islands SaPI	A0A1W6JQD6	Staphylococcus_phage	2.9e-222	95.4
AYU99125.1\|878005_878368_+	hypothetical protein	A0A1W6JQD5	Staphylococcus_phage	1.2e-62	93.3
AYU99126.1\|878650_879292_+	hypothetical protein	Q4ZE67	Staphylococcus_phage	7.7e-113	94.4
AYU99127.1\|879865_880207_+	hypothetical protein	Q4ZE66	Staphylococcus_phage	5.4e-57	97.3
AYU99128.1\|880218_880797_+	hypothetical protein	A0A2H4JBG0	uncultured_Caudovirales_phage	4.8e-29	38.9
AYU99129.1\|880814_881033_+	hypothetical protein	NA	NA	NA	NA
AYU99130.1\|881083_881611_+	hypothetical protein	Q4ZE87	Staphylococcus_phage	2.1e-87	95.4
AYU99131.1\|881613_881955_+	hypothetical protein	A0A1W6JQM3	Staphylococcus_phage	2.1e-56	96.5
AYU99132.1\|881951_882521_+\|terminase	Putative terminase, superantigen-encoding pathogenicity islands SaPI	Q4ZE85	Staphylococcus_phage	4.6e-101	98.4
AYU99133.1\|883054_883666_+	hypothetical protein	A0A0H4U080	Erysipelothrix_phage	1.7e-13	26.8
AYU99134.1\|883997_884525_-	Secreted protein Ear, superantigen-encoding pathogenicity islands SaPI	A0A1W6JQE5	Staphylococcus_phage	5.8e-66	74.3
AYU99135.1\|885581_885776_+	hypothetical protein	NA	NA	NA	NA
AYU99136.1\|886009_886861_-	membrane protein	NA	NA	NA	NA
AYU99137.1\|887188_887950_+	Iron-sulfur cluster assembly ATPase protein SufC	A0A1V0SE00	Indivirus	4.4e-06	23.3

DBSCAN-SWA_3

1047867 : 1056339

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU99269.1\|1047867_1048350_+	N5-carboxyaminoimidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
AYU99270.1\|1048336_1049461_+	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA
AYU99271.1\|1049464_1050169_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AYU99272.1\|1050168_1050432_+	Phosphoribosylformylglycinamidine synthase, PurS subunit	NA	NA	NA	NA
AYU99273.1\|1050433_1051105_+	Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit	NA	NA	NA	NA
AYU99274.1\|1051097_1053287_+	Phosphoribosylformylglycinamidine synthase, synthetase subunit	A6N228	Microbacterium_phage	3.5e-141	39.8
AYU99275.1\|1053265_1054750_+	Amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-45	31.7
AYU99276.1\|1054742_1055465_+	Phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	7.8e-37	42.1
AYU99277.1\|1055772_1056339_+	Phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1

DBSCAN-SWA_4

1315444 : 1330073

Staphylococcus_phage(60.0%)

portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU99494.1\|1315444_1316140_-	hypothetical protein	A0A2H4J5B8	uncultured_Caudovirales_phage	3.6e-07	50.3
AYU99495.1\|1316151_1316535_-	hypothetical protein	NA	NA	NA	NA
AYU99496.1\|1316681_1317074_-	Phage repressor	A0A2I6PE55	Staphylococcus_phage	1.6e-28	53.6
AYU99497.1\|1317241_1317472_+	Transcriptional regulator	A7TW90	Staphylococcus_phage	4.4e-18	60.8
AYU99498.1\|1317485_1317761_+	hypothetical protein	NA	NA	NA	NA
AYU99499.1\|1318183_1318390_-	hypothetical protein	A1BTY8	Staphylococcus_virus	3.3e-25	75.0
AYU99500.1\|1318450_1319134_+	Phage antirepressor protein	A9CR56	Staphylococcus_phage	5.2e-107	85.6
AYU99501.1\|1319232_1319394_+	Phage protein (ACLAME 104)	R4IH12	Staphylococcus_phage	1.1e-12	69.8
AYU99502.1\|1319480_1319798_+	Phage protein	W5RAK4	Staphylococcus_phage	1.6e-39	80.6
AYU99503.1\|1319787_1319967_+	hypothetical protein	NA	NA	NA	NA
AYU99504.1\|1320057_1320495_+	hypothetical protein	A0A0H3U480	Staphylococcus_phage	3.2e-54	77.5
AYU99505.1\|1320593_1321373_+	phi-ETA orf17 protein (SA bacteriophages 11, Mu50B)	A0A1W6JPW0	Staphylococcus_phage	6.7e-127	87.6
AYU99506.1\|1321399_1321948_+	Single-stranded DNA-binding protein	A7TWM8	Staphylococcus_phage	1.1e-91	92.9
AYU99507.1\|1321960_1322863_+	Putative replication initiation protein (ACLAME 10)	A0A1P8L6F0	Staphylococcus_phage	2.9e-49	52.0
AYU99508.1\|1322863_1323154_+	Phage protein (ACLAME 80)	A0A223LIA9	Staphylococcus_phage	7.2e-18	58.1
AYU99509.1\|1323168_1323333_+	hypothetical protein	A0A0E3T9L7	Staphylococcus_phage	1.1e-18	88.9
AYU99510.1\|1323332_1323644_+	hypothetical protein	NA	NA	NA	NA
AYU99511.1\|1323636_1324167_+	Phage DNA-binding protein	A0A1P8VVP1	Streptococcus_phage	5.2e-22	38.2
AYU99512.1\|1324412_1324877_+	hypothetical protein	C9E2P0	Enterococcus_phage	3.2e-20	43.0
AYU99513.1\|1324877_1325111_+	hypothetical protein	NA	NA	NA	NA
AYU99514.1\|1325153_1325642_+	prophage LambdaBa01, positive control factor Xpf	R9TMH4	Paenibacillus_phage	4.3e-07	27.7
AYU99515.1\|1325794_1326223_+	hypothetical protein	A1EAE0	Streptococcus_phage	1.1e-25	45.1
AYU99516.1\|1326209_1327088_+\|terminase	Phage terminase, large subunit	I1W649	Staphylococcus_phage	6.6e-139	80.0
AYU99517.1\|1327495_1328944_+\|portal	Phage portal	Q4ZE36	Staphylococcus_virus	7.4e-196	69.4
AYU99518.1\|1328933_1330073_+	hypothetical protein	Q4ZE35	Staphylococcus_virus	1.4e-109	61.6

DBSCAN-SWA_5

1610185 : 1618421

Staphylococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU99745.1\|1610185_1610971_-	Zinc ABC transporter, ATP-binding protein ZnuC	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
AYU99746.1\|1611096_1611987_-	Endonuclease IV	A0A2H4UU70	Bodo_saltans_virus	3.4e-26	36.0
AYU99747.1\|1611996_1613343_-	DEAD-box ATP-dependent RNA helicase CshB	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
AYU99748.1\|1613456_1614557_-	GTP cyclohydrolase 1 type 2 like protein YbgI and Bsu YqfO NIF3/CutA domain	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
AYU99749.1\|1615273_1616380_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
AYU99750.1\|1616603_1618421_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	7.9e-54	36.3

DBSCAN-SWA_6

1684926 : 1693938

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU99815.1\|1684926_1685421_-	Adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.8e-29	46.1
AYU99816.1\|1685442_1687716_-	Single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	5.2e-63	28.8
AYU99817.1\|1687919_1690199_-	Protein translocase subunit SecD / Protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AYU99818.1\|1690462_1690723_-	Protein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AYU99819.1\|1690741_1691881_-\|tRNA	Queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AYU99820.1\|1691903_1692689_-\|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
AYU99821.1\|1692933_1693938_-	Holliday junction ATP-dependent DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_7

1829440 : 1844117

Staphylococcus_phage(92.31%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU99932.1\|1829440_1829878_+	putative radical SAM protein YtqA	A0A2H4PQV5	Staphylococcus_phage	7.7e-80	100.0
AYU99933.1\|1829874_1830438_+	Putative rRNA methylase YtqB	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
AYU99934.1\|1830557_1830923_-	Repressor of toxins Rot	NA	NA	NA	NA
AYU99935.1\|1831528_1832356_-	Lysophospholipase, Monoglyceride lipase	NA	NA	NA	NA
AYU99936.1\|1832589_1833591_+	Proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
AYU99937.1\|1833712_1834177_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
AYU99938.1\|1834189_1835371_-	3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.5e-226	99.5
AYU99939.1\|1835381_1836014_-	Riboflavin synthase eubacterial/eukaryotic	A0A2H4PQS5	Staphylococcus_phage	1.7e-112	99.5
AYU99940.1\|1836020_1836629_-	Diaminohydroxyphosphoribosylaminopyrimidine deaminase	A0A2H4PQS8	Staphylococcus_phage	9.6e-113	99.0
AYU99941.1\|1837507_1839010_-	Hypothetical protein	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
AYU99942.1\|1839532_1839964_+	Arsenical resistance operon repressor	A0A2H4PQT4	Staphylococcus_phage	1.6e-50	96.2
AYU99943.1\|1839920_1841036_+	Arsenic efflux pump protein	A0A2H4PQU3	Staphylococcus_phage	3.7e-195	98.9
AYU99944.1\|1841122_1841893_-	Autolysin	Q4ZCC7	Staphylococcus_virus	8.9e-39	38.6
AYU99945.1\|1842238_1842463_-	hypothetical protein	NA	NA	NA	NA
AYU99946.1\|1842661_1843132_+	Hypothetical protein	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
AYU99947.1\|1843244_1843649_+	Hypothetical protein	NA	NA	NA	NA
AYU99948.1\|1843673_1844117_-	Hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6

DBSCAN-SWA_8

1848082 : 1862822

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYU99952.1\|1848082_1848916_-	oxidoreductase of aldo/keto reductase family, subgroup 1	A0A2H4PQR8	Staphylococcus_phage	5.4e-159	100.0
AYU99953.1\|1849125_1850034_-	Hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
AYU99954.1\|1850158_1851199_-	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	2.4e-196	99.7
AYU99955.1\|1851672_1853265_+	Phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AYU99956.1\|1853642_1854413_-	Dipeptidyl aminopeptidase/acylaminoacyl-peptidase	A0A2H4PQM6	Staphylococcus_phage	1.1e-142	98.8
AYU99957.1\|1854393_1854873_-	8-oxo-dGTPase Bsu YtkD / 8-oxo-GTPase Bsu YtkD	A0A2H4PQM4	Staphylococcus_phage	1.5e-84	98.7
AYU99958.1\|1854932_1855190_+	Membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AYU99959.1\|1855186_1856188_-	O-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	2.2e-186	97.9
AYU99960.1\|1856192_1857563_-	O-succinylbenzoic acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.6e-259	96.9
AYU99961.1\|1857827_1858310_-	Hypothetical protein	A0A2H4PQN7	Staphylococcus_phage	4.6e-78	97.9
AYU99962.1\|1858621_1859236_+	Hypothetical protein	A0A2H4PQM8	Staphylococcus_phage	9.5e-36	87.3
AYU99963.1\|1859316_1860312_+	Hypothetical protein	A0A2H4PQN2	Staphylococcus_phage	6.2e-77	98.8
AYU99964.1\|1860387_1861026_+	Hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	1.9e-87	91.3
AYU99965.1\|1861053_1861395_+	Hypothetical protein	A0A2H4PQN6	Staphylococcus_phage	3.0e-55	95.6
AYU99966.1\|1861495_1862068_+	Hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	1.1e-25	96.6
AYU99967.1\|1862264_1862822_-	hypothetical protein	A0A2H4PQN8	Staphylococcus_phage	2.7e-77	96.2

DBSCAN-SWA_9

1973000 : 2063877

Staphylococcus_phage(89.86%)

holin,protease,capsid,integrase,tRNA,portal,terminase,tail

attL 2020786:2020801|attR 2070783:2070798

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AYV00048.1\|1973000_1974428_-\|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit B and Glutamyl-tRNA(Gln) amidotransferase subunit B	NA	NA	NA	NA
AYV00049.1\|1974440_1975898_-\|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit A and Glutamyl-tRNA(Gln) amidotransferase subunit A	NA	NA	NA	NA
AYV00050.1\|1975899_1976202_-\|tRNA	Aspartyl-tRNA(Asn) amidotransferase subunit C and Glutamyl-tRNA(Gln) amidotransferase subunit C	NA	NA	NA	NA
AYV00051.1\|1976568_1978107_+	Sodium/proline symporter	NA	NA	NA	NA
AYV00052.1\|1979406_1981410_-	DNA ligase (NAD(+))	A0A0K2QQN8	Ralstonia_phage	5.8e-114	36.1
AYV00053.1\|1981413_1983606_-	ATP-dependent DNA helicase UvrD/PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
AYV00054.1\|1983602_1984295_-	Heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA
AYV00055.1\|1984466_1984730_-	His repressor	NA	NA	NA	NA
AYV00056.1\|1984876_1985764_-	Adenylosuccinate lyase and SAICAR lyase	A0A1B3B081	Gordonia_phage	3.1e-11	35.4
AYV00057.1\|1987029_1988196_+	Staphopain A precursor	NA	NA	NA	NA
AYV00058.1\|1988226_1988553_+	hypothetical protein	NA	NA	NA	NA
AYV00059.1\|1988844_1989018_-	YebG	NA	NA	NA	NA
AYV00060.1\|1988998_1989601_-	Integral membrane protein	NA	NA	NA	NA
AYV00061.1\|1989871_1990693_-	NAD synthetase	G3MA24	Bacillus_virus	2.3e-69	52.7
AYV00062.1\|1990685_1992155_-	Nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.5e-108	45.1
AYV00063.1\|1992338_1993415_+	Nitric oxide synthase oxygenase	NA	NA	NA	NA
AYV00064.1\|1993434_1994241_+	Prephenate dehydratase	NA	NA	NA	NA
AYV00065.1\|1994416_1995610_-	Sodium-dependent anion transporter family	NA	NA	NA	NA
AYV00066.1\|1996181_1997279_-	Cell wall surface anchor family protein	U5PWM6	Bacillus_phage	2.5e-47	34.9
AYV00067.1\|1997649_1998210_+	Nicotinamidase	G3MA16	Bacillus_virus	2.0e-32	41.2
AYV00068.1\|1998262_1999192_+	Manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
AYV00069.1\|2002820_2003651_-	6-phosphogluconolactonase	NA	NA	NA	NA
AYV00070.1\|2003920_2004322_+	hypothetical protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9
AYV00071.1\|2004894_2005068_-	hypothetical protein	NA	NA	NA	NA
AYV00072.1\|2005518_2006559_+	Choloylglycine hydrolase	NA	NA	NA	NA
AYV00073.1\|2006615_2007305_-	hypothetical protein	NA	NA	NA	NA
AYV00074.1\|2007452_2008010_-	hypothetical protein	NA	NA	NA	NA
AYV00075.1\|2008069_2008594_-	hypothetical protein	NA	NA	NA	NA
AYV00076.1\|2008860_2009358_+	hypothetical protein	NA	NA	NA	NA
AYV00077.1\|2009341_2010082_-	hypothetical protein	NA	NA	NA	NA
AYV00078.1\|2010081_2010828_-	ABC transporter, ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	9.9e-19	34.5
AYV00079.1\|2010949_2011630_-	hypothetical protein	NA	NA	NA	NA
AYV00080.1\|2011630_2012527_-	ABC transporter, ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
AYV00081.1\|2012523_2012904_-	Transcriptional regulator, GntR family	NA	NA	NA	NA
AYV00082.1\|2013162_2013339_-	hypothetical protein	NA	NA	NA	NA
AYV00083.1\|2013878_2015102_+	Aspartate aminotransferase	NA	NA	NA	NA
AYV00084.1\|2015442_2017806_-	Extracellular adherence protein of broad specificity Eap/Map	NA	NA	NA	NA
AYV00085.1\|2018151_2018391_+	Beta-hemolysin	A0A1P8L6A7	Staphylococcus_phage	4.7e-23	90.5
AYV00086.1\|2018762_2018942_+	Phage protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
AYV00087.1\|2019321_2019513_+	Phage protein	M9NS66	Staphylococcus_phage	1.7e-23	100.0
AYV00088.1\|2019565_2019916_-	fibrinogen binding phage associated protein	A7TWS0	Staphylococcus_phage	7.5e-54	100.0
AYV00089.1\|2020425_2020722_-	Phage lysin, N-acetylmuramoyl-L-alanine amidase	R9QTN8	Staphylococcus_phage	3.0e-51	99.0
2020786:2020801	attL	NA	NA	NA	NA
AYV00090.1\|2021412_2021904_-	Staphylokinase	A7TWR8	Staphylococcus_phage	8.0e-86	100.0
AYV00091.1\|2022094_2022850_-	Phage lysin, N-acetylmuramoyl-L-alanine amidase	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
AYV00092.1\|2022861_2023116_-\|holin	Phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
AYV00093.1\|2023719_2023926_-	Phage protein	A0A1W6JPK1	Staphylococcus_phage	1.1e-15	93.3
AYV00094.1\|2024073_2024361_-	Phage protein	C5I682	Staphylococcus_phage	9.9e-44	100.0
AYV00095.1\|2024550_2028333_-	Structural protein, phage associated	R9QT86	Staphylococcus_phage	0.0e+00	100.0
AYV00096.1\|2028348_2029737_-	Phage protein	R9QST9	Staphylococcus_phage	1.6e-277	99.8
AYV00097.1\|2029837_2033260_-\|tail	Phage tail length tape-measure protein	R9QSQ8	Staphylococcus_phage	0.0e+00	100.0
AYV00098.1\|2034723_2035170_-	hypothetical protein	D2JLF5	Staphylococcus_phage	5.4e-73	100.0
AYV00099.1\|2035234_2036188_-\|tail	Phage major tail protein	A7TWD0	Staphylococcus_phage	6.2e-175	100.0
AYV00100.1\|2036188_2036569_-	hypothetical protein	D2JLF3	Staphylococcus_phage	5.8e-68	100.0
AYV00101.1\|2036565_2036943_-	Phage protein	D2JLF2	Staphylococcus_phage	1.1e-61	100.0
AYV00102.1\|2036942_2037278_-	hypothetical protein	A7TWC7	Staphylococcus_phage	1.1e-59	100.0
AYV00103.1\|2037264_2037597_-	Phage DNA packaging	D2JLF0	Staphylococcus_phage	2.1e-58	100.0
AYV00104.1\|2037605_2037764_-	hypothetical protein	D2JLE9	Staphylococcus_phage	3.2e-20	100.0
AYV00105.1\|2037799_2039047_-\|capsid	Phage capsid protein	A7TWC4	Staphylococcus_phage	5.0e-209	100.0
AYV00106.1\|2039134_2039719_-\|protease	Phage maturation protease	D2JLE7	Staphylococcus_phage	9.8e-107	100.0
AYV00107.1\|2039711_2040992_-\|portal	Phage portal protein	R9QSV8	Staphylococcus_phage	5.5e-235	99.8
AYV00108.1\|2040966_2041206_-	hypothetical protein	R9QT78	Staphylococcus_phage	5.3e-35	100.0
AYV00109.1\|2042876_2043344_-\|terminase	Phage terminase, small subunit	D2JLE3	Staphylococcus_phage	1.1e-81	100.0
AYV00110.1\|2043472_2043826_-	hypothetical protein	D2JLE2	Staphylococcus_phage	1.3e-66	100.0
AYV00111.1\|2043832_2044285_-	hypothetical protein	R9QTP3	Staphylococcus_phage	1.8e-79	100.0
AYV00112.1\|2046036_2046243_-	Phage protein	S4V684	Staphylococcus_phage	7.6e-30	100.0
AYV00113.1\|2046279_2046816_-	Dimeric dUTPase	R4IG63	Staphylococcus_phage	9.4e-96	100.0
AYV00114.1\|2046808_2047057_-	Phage protein	A0A2K9VBU0	Staphylococcus_phage	3.1e-38	100.0
AYV00115.1\|2047049_2047334_-	hypothetical protein	E9LT36	Staphylococcus_phage	2.7e-46	100.0
AYV00116.1\|2047330_2047780_-	hypothetical protein	A0A2I6PDH2	Staphylococcus_phage	9.3e-81	100.0
AYV00117.1\|2047776_2047971_-	Phage protein	A0A2I6PE33	Staphylococcus_phage	2.5e-27	100.0
AYV00118.1\|2047967_2048330_-	hypothetical protein	I1W655	Staphylococcus_phage	5.8e-65	100.0
AYV00119.1\|2048366_2048609_-	Phage protein	R9QT89	Staphylococcus_phage	3.0e-41	100.0
AYV00120.1\|2048612_2048981_-	Phage protein	A0A0E3XD52	Staphylococcus_phage	6.7e-53	100.0
AYV00121.1\|2048993_2049398_-	Phage Holliday junction resolvase	A0A0E3XBN4	Staphylococcus_phage	1.4e-72	100.0
AYV00122.1\|2049406_2049625_-	Phage protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
AYV00123.1\|2049631_2050525_-	Phage protein	A0A0E3TAG7	Staphylococcus_phage	1.1e-141	100.0
AYV00124.1\|2050554_2051025_-	Single-stranded DNA-binding protein, phage associated	A0A0E3T9H6	Staphylococcus_phage	5.7e-81	100.0
AYV00125.1\|2051025_2051511_-	Metallo-beta-lactamase superfamily domain protein in prophage	S4SWA4	Staphylococcus_phage	9.4e-87	100.0
AYV00126.1\|2051723_2052644_-	Recombinational DNA repair protein RecT (prophage associated)	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
AYV00127.1\|2054283_2054592_-	ATPase involved in DNA repair, phage associated	R9QT82	Staphylococcus_phage	1.9e-48	100.0
AYV00128.1\|2054594_2054858_-	Phage protein	R9QT48	Staphylococcus_phage	7.7e-43	100.0
AYV00129.1\|2054866_2055127_-	Phage protein	A0A2I6PDH1	Staphylococcus_phage	2.6e-43	100.0
AYV00130.1\|2055219_2055381_-	Phage protein	A0A2I6PDF7	Staphylococcus_phage	1.9e-20	100.0
AYV00131.1\|2055377_2055698_-	Phage protein	R9QT52	Staphylococcus_phage	1.5e-56	100.0
AYV00132.1\|2055756_2055948_+	hypothetical protein	A7TWL9	Staphylococcus_phage	1.2e-29	100.0
AYV00133.1\|2055984_2056176_-	hypothetical protein	A7TWL8	Staphylococcus_phage	2.8e-26	100.0
AYV00134.1\|2056225_2056582_+	hypothetical protein	A0A1P8L6H1	Staphylococcus_phage	6.1e-59	100.0
AYV00135.1\|2056785_2057574_-	Phage antirepressor protein	R9QSV3	Staphylococcus_phage	1.2e-144	100.0
AYV00136.1\|2057531_2057831_-	hypothetical protein	A0A2I6PDH8	Staphylococcus_phage	2.4e-32	95.8
AYV00137.1\|2057994_2058711_+	CI repressor, phage associated	R9QTP6	Staphylococcus_phage	9.2e-131	100.0
AYV00138.1\|2058722_2059580_+	hypothetical protein	R9QTP0	Staphylococcus_phage	1.2e-161	100.0
AYV00139.1\|2059624_2059807_+	Phage protein	R9QT81	Staphylococcus_phage	5.3e-27	100.0
AYV00140.1\|2059985_2060480_-	hypothetical protein	A7TW88	Staphylococcus_phage	4.4e-84	99.4
AYV00141.1\|2060706_2061744_+\|integrase	Phage integrase	A7TWL3	Staphylococcus_phage	3.4e-179	100.0
AYV00142.1\|2062240_2062720_+	Sphingomyelinase	A0A1P8L6H7	Staphylococcus_phage	1.3e-64	100.0
AYV00143.1\|2062860_2063877_-	Cytolytic pore-forming protein F component -> Leukocidin LukF-PV	A0A2I6PER8	Staphylococcus_phage	2.3e-26	29.3
2070783:2070798	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP033506

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection