CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027707	Pseudomonas chlororaphis subsp. piscium strain DSM 21509 chromosome, complete genome	3 crisprs	DinG,csa3,cas3,RT,PD-DExK,DEDDh,WYL	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027707_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027707_1

424420-424531

Orphan

Consensus_repeat	Method
GCGCTGATTGCGCCGGGCCCGGTGTAAAGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027707_1

>merge|CP027707|1|424420-424531|CRISPRCasFinder
GCGCTGATTGCGCCGGGCCCGGTGTAAAGAGGGGAAGCCCCGGCCTGCCTGTACCAAGGTTCCCAAAAGCGTGGGGGCAGCGCTGATTGCGCTGGGCCCGGTGTAAAGAGGG

>CP027707|1|1|424420-424531|CRISPRCasFinder
GCGCTGATTGCGCCGGGCCCGGTGTAAAGAGGG	GAAGCCCCGGCCTGCCTGTACCAAGGTTCCCAAAAGCGTGGGGGCA
GCGCTGATTGCGCTGGGCCCGGTGTAAAGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP027707.1\|AZC28386.1\|434434_435961_+\|3-hydroxyacyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236211
CP027707.1\|AZC28376.1\|422825_423308_+\|Protein-export-protein-SecB-(maintains-pre-export-unfolded-state)	unknown	unknown	gnl\|CDD\|180234
CP027707.1\|AZC28387.1\|435996_437199_+\|Acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|181242
CP027707.1\|AZC28383.1\|430632_432354_+\|Acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173843
CP027707.1\|AZC28374.1\|422100_422514_+\|Rhodanese-related-sulfurtransferase-YibN	unknown	unknown	gnl\|CDD\|238089
CP027707.1\|AZC28370.1\|416730_417489_-\|Putative-periplasmic-protein-YibQ	unknown	unknown	gnl\|CDD\|377404
CP027707.1\|AZC28379.1\|425174_426611_-\|Nitrogen-regulation-protein-NtrC	unknown	unknown	gnl\|CDD\|273818
CP027707.1\|AZC28382.1\|429620_430520_-\|Transcriptional-regulator,-LysR-family	unknown	unknown	gnl\|CDD\|176139
CP027707.1\|AZC28371.1\|417655_418966_-\|Carboxyl-terminal-protease	unknown	unknown	gnl\|CDD\|223864
CP027707.1\|AZC28369.1\|415843_416599_+\|ABC-type-amino-acid-transport/signal-transduction-system,-periplasmic-component/domain	unknown	unknown	gnl\|CDD\|223904
CP027707.1\|AZC28375.1\|422515_422770_+\|Glutaredoxin-3-(Grx3)	unknown	unknown	gnl\|CDD\|274017
CP027707.1\|AZC28377.1\|423470_423926_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223297
CP027707.1\|AZC28380.1\|426607_427693_-\|Nitrogen-regulation-protein-NtrB	unknown	unknown	gnl\|CDD\|226370
CP027707.1\|AZC28388.1\|437343_438459_+\|Methylphosphotriester-DNA--protein-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|225080
CP027707.1\|AZC28378.1\|423990_424365_+\|hypothetical-protein	unknown	unknown	unknown
CP027707.1\|AZC28372.1\|418997_420284_-\|Murein-hydrolase-activator-EnvC	unknown	unknown	gnl\|CDD\|227278
CP027707.1\|AZC28384.1\|432384_433572_+\|L-carnitine-dehydratase/bile-acid-inducible-protein-F	unknown	unknown	gnl\|CDD\|367110
CP027707.1\|AZC28381.1\|428013_429426_-\|putative-MFS-type-transporter	unknown	unknown	gnl\|CDD\|340927
CP027707.1\|AZC28385.1\|433643_434438_+\|Enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|236162
CP027707.1\|AZC28373.1\|420420_421950_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463

Protein	Function_ID	Function_description	E-value
CP027707.1\|AZC28386.1\|434434_435961_+\|3-hydroxyacyl-CoA-dehydrogenase	gnl\|CDD\|236211	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated.	0
CP027707.1\|AZC28376.1\|422825_423308_+\|Protein-export-protein-SecB-(maintains-pre-export-unfolded-state)	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	2.09825e-83
CP027707.1\|AZC28387.1\|435996_437199_+\|Acetyl-CoA-acetyltransferase	gnl\|CDD\|181242	PRK08131, PRK08131, 3-oxoadipyl-CoA thiolase.	0
CP027707.1\|AZC28383.1\|430632_432354_+\|Acyl-CoA-dehydrogenase	gnl\|CDD\|173843	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.	3.76965e-148
CP027707.1\|AZC28374.1\|422100_422514_+\|Rhodanese-related-sulfurtransferase-YibN	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	6.79697e-24
CP027707.1\|AZC28370.1\|416730_417489_-\|Putative-periplasmic-protein-YibQ	gnl\|CDD\|377404	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).	7.58333e-93
CP027707.1\|AZC28379.1\|425174_426611_-\|Nitrogen-regulation-protein-NtrC	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
CP027707.1\|AZC28382.1\|429620_430520_-\|Transcriptional-regulator,-LysR-family	gnl\|CDD\|176139	cd08448, PBP2_LTTR_aromatics_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type regulator similar to CbnR which is involved in the regulation of chlorocatechol breakdown. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.68367e-90
CP027707.1\|AZC28371.1\|417655_418966_-\|Carboxyl-terminal-protease	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	2.3766e-142
CP027707.1\|AZC28369.1\|415843_416599_+\|ABC-type-amino-acid-transport/signal-transduction-system,-periplasmic-component/domain	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	5.29082e-24
CP027707.1\|AZC28375.1\|422515_422770_+\|Glutaredoxin-3-(Grx3)	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	1.27223e-49
CP027707.1\|AZC28377.1\|423470_423926_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	2.0555e-88
CP027707.1\|AZC28380.1\|426607_427693_-\|Nitrogen-regulation-protein-NtrB	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	4.16449e-164
CP027707.1\|AZC28388.1\|437343_438459_+\|Methylphosphotriester-DNA--protein-cysteine-S-methyltransferase	gnl\|CDD\|225080	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism].	1.97827e-80
CP027707.1\|AZC28372.1\|418997_420284_-\|Murein-hydrolase-activator-EnvC	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	3.48122e-102
CP027707.1\|AZC28384.1\|432384_433572_+\|L-carnitine-dehydratase/bile-acid-inducible-protein-F	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	2.07776e-150
CP027707.1\|AZC28381.1\|428013_429426_-\|putative-MFS-type-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.26834e-152
CP027707.1\|AZC28385.1\|433643_434438_+\|Enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|236162	PRK08138, PRK08138, enoyl-CoA hydratase; Provisional.	1.09269e-159
CP027707.1\|AZC28373.1\|420420_421950_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0

>CP027707.1|AZC28378.1|423990_424365_+|hypothetical-protein
MLRVFGSLAIFGVMVGLMIGRLTTPDPTELQDVQVQPNALVVWFNNEPKVHGEHVDGAVALLFEAEGRAQKGQLKINDKDANWRVRAAKEGLLLNVVAARALHAEWSGSEVDGRWRLEVQLREE
>CP027707.1|AZC28377.1|423470_423926_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRHADLASCLESLGHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLEALPAEQRLRLPMREGCRSLNLSNTVAVAVYEAWRQLGFK
>CP027707.1|AZC28376.1|422825_423308_+|Protein-export-protein-SecB-(maintains-pre-export-unfolded-state)
MTDQQNTAATEDESAPQFSLQRIYVRDLSFEAPKSPAIFRQQWEPSVGLDLNTRQKALEEGFHEVVLTLSVTVKNGDEVAFIAEVQQAGIFLIKNLDDASMSHTLGAFCPNILFPYAREALDSLVTRGSFPALMLAPVNFDALYAQELQRLQAAGENTVQ
>CP027707.1|AZC28375.1|422515_422770_+|Glutaredoxin-3-(Grx3)
MAAVVVYSSDYCPYCSRAKYLLENKGVAFEEIKVDGKPQVRAEMAQKAGRTSVPQIWIGSTHVGGCDDLFALERAGKLDALLAA
>CP027707.1|AZC28374.1|422100_422514_+|Rhodanese-related-sulfurtransferase-YibN
MVAHLIQFATEHYLLVGAFVILLALLIAHELSRGGRSLSTRELTALVNSEQGVVIDIRPSKDFAAGHIVGALNIPQDKLAARVGELEKHKAKTIILVDALGQHAGTHARELMKSGFTAAKLSGGVGSWKADNLPLVK
>CP027707.1|AZC28373.1|420420_421950_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MTTTPKPLVLMILDGFGHSESHESNAIYAAKKPVLDRLCASVPNGLISGSGMDVGLPDGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFENPTICAAVDKAVAAGKAVHILGLLSDGGVHSHQDHLVAMAELAFKRGAEKIYLHAFLDGRDTPPKSAASSIELLDETFKTLGKGRIASLIGRYFAMDRDNRWDRVAQAYNLIVDGKGEFNAATAQEGLQAAYERGESDEFVKATTLGEPVKVEDGDAVVFMNFRADRARELSRVFVEDGFKEFERASQPKLAGFVMLTQYAASIPAPSAFAPGSLENVLGDYLAKNGKTQLRIAETEKYAHVTFFFSGGREEPFPGEERILIPSPKVATYDLQPEMSAPEVTDRIVEAIENQRYDVIVVNYANGDMVGHSGVFDAAVKAVECLDLCVGRIVEALEKVGGEALITADHGNVEQMSDASTGQAHTAHTSEPVPFIYVGKRNLKVREGGVLADVAPTMLKLLGLPQPAEMTGTSILV
>CP027707.1|AZC28372.1|418997_420284_-|Murein-hydrolase-activator-EnvC
MLRALITLALICLLQPAFADERAQTQQQLDATRQDIAELKKLLGKLQEEKSGVQKDLRGTETEMGKLEKQVDALQKELKKSESELQRLDEEKKKLQSARIEQQRLIAIQARAAYQNGRQEYLKLLLNQQNPEKFARTLTYYDYLSQARLEQLKNFNETLRQLANVEKEISLQQAQLLVQKSSLDTQREELDKVRKERQVALAKLNDDVKARGDKLKVREQDQADLGKVLKTIEETLARQAREAEEARQKALIAQQEAEKKRLREAQASADDSPSKPPRATPGPLVSSAGASYGGPFASSRGKLPWPVDGRLLARFGESRGDDARTKWDGVMISASAGSQVHAVHGGRVVFADWLRGAGLLVILDHGNGYLSLYGHNQTLLKEAGDVVKAGESISTVGSSGGQGAPALYFAIRQQGRPSDPAQWCRAQG
>CP027707.1|AZC28371.1|417655_418966_-|Carboxyl-terminal-protease
MLHLSRLTSLALTIALVIGAPLAFAAETAQSAAATTTKAPLPLEELRTFAEVMDRIKAAYVEPVDDKTLLENAIKGMLSNLDPHSAYLGPEDFAELQESTSGEFGGLGIEVGSEDGIIKVVSPIDDTPASKAGIQAGDLIVKINGQPTRGQSMTEAVDKMRGKIGQKITLTLVRDGGAPFDVTLARATIQVKSVKSQLLESGYGYIRITQFQVKTGEEVSKALAKLRKDNGKKLNGIILDLRNNPGGVLQSAVEVVDHFITKGLIVYTKGRIANSELRFSATGKDESEAVPMVVLINGGSASASEIVAGALQDQKRAVLMGTTSFGKGSVQTVLPLNNERALKITTALYFTPNGRSIQAQGIVPDIEVRRAKITNEAQDTEYFKEADLQGHLGNGNGGADKPTASGSKPKPMPQDDDYQLAQALSLLKGLSITRSK
>CP027707.1|AZC28370.1|416730_417489_-|Putative-periplasmic-protein-YibQ
MIGLLCLFAFTSPQAAEPAPRKAYLSLIIDDLGQNLPRDRRVLALPGPVTTAIMPDTPHAAEFAREAHRAGKIVILHMPMDPATGPFAWHPELPIEELERRLNAAFKAVPYTSGINNHMGSRMTSQPQAMAWLMAELQRRHKFFVDSRTSAKTVAAAEAQKIGLASVSRDVFLDDERTEDAISHQLQTAINLARKQGSAVVIGHPYPQTLAVLERELPRLKAQGIDWIDIELMISVRSNKAMSGHGKDGVYR
>CP027707.1|AZC28369.1|415843_416599_+|ABC-type-amino-acid-transport/signal-transduction-system,-periplasmic-component/domain
MFKRLLLVLASASVLFAASARAAQTPDTSLVLLTENFPPYNMAKNGKNFAQGENINGIAVDIVREMFKRAGINYSLTLRFPWERIYKLALEQPGYGVFVTARLPDREPLFKWVGPIGPDDWIMLARDDSKITLQSLEQARKYRIGAYKGDAIAETLAKQGLKPQVVLKDQDNARKLVGGQIDLWATGDPAGRYLARQEGVTGLKTVLRFHSAQLYLALNKEVPDETVARLQAALDQLREEGVVEEIMGRYL
>CP027707.1|AZC28379.1|425174_426611_-|Nitrogen-regulation-protein-NtrC
MSRSETVWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQQPDVIISDIRMPGASGLDLLARIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVKRANQHAQEQQGLEVIPALARTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALHRHSPRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLDEIGDMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLETLVHAGKFREDLFHRLNVIRIHIPRLSDRREDIPTLAKHFLSRAAQELAVEPKLLKSETEEYLKNLPWPGNVRQLENTCRWITVMASGREVHISDLPPELLSLPQDSAPVTNWEQALRQWADQALARGQSSLLDSAVPSFERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKELGMKVDGGDDDDSDEG
>CP027707.1|AZC28380.1|426607_427693_-|Nitrogen-regulation-protein-NtrB
MTISDQLHRLLLDNLTTATILLNADLRLEYMNPAAEMLLAISGQRSHGQFISELFTESAEALSSLRQAVQQAHPFTKREAMLTALTGQTLTVDYAVTPILSNGDTLLLLEVHPRDRLLRITKEEAQLSKQETSKMLVRGLAHEIKNPLGGIRGAAQLLARELPDENLKDYTNVIIEEADRLRNLVDRMLGSNKLPSLALCNVHEVLERVSSLVEAESQGCITLVRDYDPSIPDVLIDREQMIQAVLNIVRNAMQAISSQNELRLGRICLRTRTMRQFTIGHVRHRLVTKIEIIDNGPGIPAELQETIFFPMVSGRPDGTGLGLAITQNIISQHQGLIECDSHPGHTTFSIFLPLEQGAPST
>CP027707.1|AZC28381.1|428013_429426_-|putative-MFS-type-transporter
MNAAQHAAAHKKARKAGIASFIGTTIEWYDFYAYGIAAALVFGKVFFPADLPPGTATLLSFLTLWAGFIARPIGGIIFGHLGDKIGRKTTLVITLIMMGVATTCIGLLPSYLQIGIWAPIALVVLRIIQGIAVGGEWGGAILIASESAPKGKGILYAAFAQQGSPAGNLLATLVFFGLSALPAPDFLLWGWRIPFLLSAALVLVGMVIRLKLEESDDMKRLIQQKKTVKLPILEVLRNHWQIVLLGAGVLPIIHVTYFKSTFALSWATKELGYSQSSFLSVIVIALVVQFITQPLGALLVSRMDMRKAVVLMVLPEFFLMPAMFFAVETGVYWIAVLGMCLATVPHSMFYGAVGGILARAFPTKVRYSGLSISYQLCSLLVGGATPVLAQGILNNTGSIVGVAIASACYALVSLVCMLLLLKRIGHNAADLSTAEQADADELAREPRATLLNDEPITTQPAIDKDPHPAH
>CP027707.1|AZC28382.1|429620_430520_-|Transcriptional-regulator,-LysR-family
MDLKQLRYFVAVAEELHFGRAAARLFISQPALSFDIKKLESQLDVQLLTRNNKSVSLTNAGQVLLDEARYLLLRAEQARRLTLRSAQGFVGRLSIGFVNSILHRGLPQAVRTFEQDHPDTEIVLMEMNSAEQAQALQRGQIDIGFVHWSHFPESIRGEPVLAEPFLCCLPQGHRLAGEARIDLAQLANDDFILFPRNVSPHYHDLIIARCVAAGFSPRIRHETRLWQTVVAMVAYEMGVALVPQTLAGTWKEGVHYCEISGDGALSEVHAIRHADKPSAAAESFLTVLKALQKPVAPGL
>CP027707.1|AZC28383.1|430632_432354_+|Acyl-CoA-dehydrogenase
MTALPEPAQDTLNIPDSRGLNLFDCDAGLAALLKVYLPAQLYAQWLPTLRQLGGRAGGELDVLALSADKNPPQLLPRTRRGEDLQSIHKHPDFIALERAAYAELGLASMSHCAEPALPLVKYALTFLFVQAEFGLCCPVSMTDSLTRTLRKYGSPELVARYLPSLASRDFDRLFQGAMFMTEQAAGSDVSRTETRARLESGEWRLFGDKWFCSNPDADLAMVLARPEDAPEGMKGVSLFLLPKLRPDGSRNAYRILRLKDKLGSRSMASGEISLDGATAYLIGEIGRGFQQMADMINMSRLSNGVRAAGLMRRGVNEALYVARHRRAFGRHLIEMPLMQRQLLKMMLPAEQARSMFMQIATLLPKADAGDEAARKCVRILTPLIKFRACRDARRVTGDAMEVRGGVGYIEEWSDARLVRDAHLGSIWEGTSNIVALDIARAVTREQALEPLRHYLAGLLAEADLPAASQRLFETVLQRAVAAIEKVAQERRDDQVRLAGSALYHTATAIFMAWEASRQAPDYRRLALAHLLLQHKLLPRDPLRPEPALEPELLALLANEGPLSKADAMQLLPA
>CP027707.1|AZC28384.1|432384_433572_+|L-carnitine-dehydratase/bile-acid-inducible-protein-F
MNHSKGALAGLKVIDLSRVLGGPYCSQALADHGAEVIKLEPLSGDETRGWGPPFEGADASYFRGVNRNKQGIAVDLSRPAGITLLMRLLEDADVLIENFKPGTLERWGIGYAEVLSQRFPTLIHCAVSGFGSDGPLGGLPGYDAVIQAMAGLMSVNGEADSGPLRIGLPIVDMVTGLNALAGILLALNERHRSGLGQSLDITLYDCGVSLLHPHLANYFAAGKTPLRTGNAHPNIAPYDSYRTGTEPIFLAVGNDRQFAKLCEQLDAGALLDDPRFADNGCRSVNREALKQALEARLAEHDGTLLAQRLIRLGVPCGSIASIDKVVEHPHTRHRGLLVEIGDYRGVGSPVKLSRTPASYRSAPPALGANTREVLEGLGLDDQTIENLFEHGIVRE
>CP027707.1|AZC28385.1|433643_434438_+|Enoyl-CoA-hydratase/isomerase-family-protein
MSPESVSPQPLVLLKQPAPGVALLRLNRPQALNALNMALREELAEHFRRLDACPQTRVVVLTGGDTVFAAGADLSELVSASALQLYARHAERHWQAISACRKPVIAAVNGYALGGGCELAMHCDLIVAGHSARFAQPEIKVGVMPGAGGTQRLLRAVGKFQALRLLLTGCQVPADEALRLGLVSEVVADSETLPRALALAASIAGMPPLAVAQIKEVVLAGMDLPLEQALVLERKAFQLLFGSHDQREGMQAFLEKRKPEYQGK
>CP027707.1|AZC28386.1|434434_435961_+|3-hydroxyacyl-CoA-dehydrogenase
MTTQPLQRIGLVGTGAMGRGIAQVMAMAGLKVFLFDARPGAAATAREQLATIFAQQIEKARITPQDAAAAMLNLEVVDSLQALHDCQLVIEAIVEDLEAKQQLFRQLEEVLAPSAILASNTSSLSITAIASVCRHPERVAGLHFFNPVPRMRIVEVIDGLATSVGARLQELVRAIGYYPARAKDSPGFIVNHAGRAFGTEALRILSEGVAPAWRIDALLRDSAGFAMGPFELLDLIGLDVSVPVMESVYRQFYEEPRYRPHPVLRLMQAGGRLGRKSGQGFYLYDEPGDTRRPPQAVPHCAALPPVWIAADDEVGRLRLLDLLERLGAKVENGLRPSSSALCLVAPLGDDASEAALRHATDPSRTVAIDTLTTLDSQRCLMLNPATREDMQHAAHALFSADGGTVTLIRDSCGFIVQRTLASIVNLACDIAQQGIASVADIDAAVRLGLGYPLGPLEWGDQLGPERLLQILERLHVLTGDPRYRPSGWLRRRALLGLSLRQPENPMPA
>CP027707.1|AZC28387.1|435996_437199_+|Acetyl-CoA-acetyltransferase
MLDAYIYSGLRTPFGRHGGSLASVRPDDLVGPLLVRLLETSGLPAEALEEVILGCTNQTGEDSRNLARNALLSAGLPWRVPGQTVNRLCASGLSAVIDAARAITCGEGRLYLAGGVESMSRAPFIMAKAESAYSRTLEVADSTIGARFANPRLVERYGNHSMPETGDNLARRFAISREDADRFAAASQARYQEALLAGVLDDEIMAVEVPVGRKGQSLTVCDDEHPRPRSDLAALSRLPTLFAEGVVTAGNASGINDGAAVLLLGSSEIGMEHGVAPMARILSSASVGVEPQFMGIGPHRAILLALQRARIGLEQLDLIEINEAFAPQVLACLKALNLDFDDPRVNPNGGAIAIGHPLGASGARLVLSACRTLQRNNQRYAVVSLCVGVGQGVAMVIERA
>CP027707.1|AZC28388.1|437343_438459_+|Methylphosphotriester-DNA--protein-cysteine-S-methyltransferase
MDNAPLLFQLPDDDTLYRALLERDPAYDGFAFVGVKSTGVFCRLTCAARKPKRENTVFFSSIKACVEAGFRACLRCRPLEQTGAQEPLVKQLLALLENNADKRWYEGDLIELGFDPSTVRRAFKRHFGVTFLEMARLRRIGEGMQQLAGGASVIDAQISASFDSDSGFRSAFTRLLGQPPSNLRGCELLKADWLQTPIGVMLAVADAQALHLLEFFDRPALATELKRLQENTGSTIGFGRFAPIDQIESELRRFFAGESASFATPLALNASAFTRTVWQALRAIPPGVTRSYAEVASSIGSASAVRAVARANGANQIAIVIACHRVIGSDGSLTGYGGGLWRKRWLLEHERRLYAQVQARHNLRADEPVAG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP027707_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027707_2

3944717-3944809

Orphan

Consensus_repeat	Method
GGACGCAGTCCTCGCAAGGCCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027707_2

>merge|CP027707|2|3944717-3944809|CRISPRCasFinder
GGACGCAGTCCTCGCAAGGCCTGTGCACTGGATCTACCTGAAACAACGCATCGTCTGGTGGGCGGCATTCCGACGCAGTCCTCGCAAGGCCTG

>CP027707|2|2|3944717-3944809|CRISPRCasFinder
GGACGCAGTCCTCGCAAGGCCTG	TGCACTGGATCTACCTGAAACAACGCATCGTCTGGTGGGCGGCATTC
CGACGCAGTCCTCGCAAGGCCTG

Protein	Signature genes	Signature genes Name	Protein_function
CP027707.1\|AZC31627.1\|3943691_3944375_+\|Nitric-oxide--responding-transcriptional-regulator-NnrA-(Crp/Fnr-family)	unknown	unknown	gnl\|CDD\|223736
CP027707.1\|AZC31636.1\|3952262_3952706_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225934
CP027707.1\|AZC31628.1\|3944371_3944566_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237756
CP027707.1\|AZC31626.1\|3943437_3943653_+\|hypothetical-protein	unknown	unknown	unknown
CP027707.1\|AZC31638.1\|3952952_3953453_-\|Cyclic-pyranopterin-monophosphate-synthase-accessory-protein	unknown	unknown	gnl\|CDD\|236483
CP027707.1\|AZC31637.1\|3952710_3952956_-\|Molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|182985
CP027707.1\|AZC31633.1\|3949280_3949880_-\|Nitric-oxide-reductase-activation-protein-NorE	unknown	unknown	gnl\|CDD\|239213
CP027707.1\|AZC31631.1\|3948470_3948911_-\|Nitric-oxide-reductase-subunit-C	unknown	unknown	gnl\|CDD\|365823
CP027707.1\|AZC31629.1\|3944945_3946781_-\|Nitric-oxide-reductase-activation-protein-NorD	unknown	unknown	gnl\|CDD\|226921
CP027707.1\|AZC31634.1\|3949863_3950655_-\|Nitric-oxide-reductase-activation-protein-NorQ	unknown	unknown	gnl\|CDD\|336785
CP027707.1\|AZC31619.1\|3935920_3937156_-\|Molybdopterin-molybdenumtransferase	unknown	unknown	gnl\|CDD\|238452
CP027707.1\|AZC31621.1\|3937816_3938464_-\|Pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|273138
CP027707.1\|AZC31625.1\|3941932_3943123_-\|NnrS-protein	unknown	unknown	gnl\|CDD\|225754
CP027707.1\|AZC31635.1\|3950811_3952170_-\|Coproporphyrinogen-III-oxidase,-oxygen-independent	unknown	unknown	gnl\|CDD\|236430
CP027707.1\|AZC31624.1\|3941462_3941903_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225934
CP027707.1\|AZC31632.1\|3949009_3949270_-\|Nitric-oxide-reductase-activation-protein-NorF	unknown	unknown	gnl\|CDD\|377083
CP027707.1\|AZC31622.1\|3939027_3940554_-\|Anaerobic-nitric-oxide-reductase-transcription-regulator-NorR	unknown	unknown	gnl\|CDD\|235331
CP027707.1\|AZC31620.1\|3937152_3937719_-\|Molybdenum-cofactor-biosynthesis-protein-MoaB	unknown	unknown	gnl\|CDD\|131715
CP027707.1\|AZC31630.1\|3947039_3948467_-\|Nitric-oxide-reductase-subunit-B	unknown	unknown	gnl\|CDD\|225795
CP027707.1\|AZC31623.1\|3940704_3941421_+\|Repair-of-Iron-Centers-di-iron-protein	unknown	unknown	gnl\|CDD\|236812

Protein	Function_ID	Function_description	E-value
CP027707.1\|AZC31627.1\|3943691_3944375_+\|Nitric-oxide--responding-transcriptional-regulator-NnrA-(Crp/Fnr-family)	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.41134e-39
CP027707.1\|AZC31631.1\|3948470_3948911_-\|Nitric-oxide-reductase-subunit-C	gnl\|CDD\|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	1.77935e-16
CP027707.1\|AZC31628.1\|3944371_3944566_+\|hypothetical-protein	gnl\|CDD\|237756	PRK14559, PRK14559, serine/threonine phosphatase.	0.00570228
CP027707.1\|AZC31638.1\|3952952_3953453_-\|Cyclic-pyranopterin-monophosphate-synthase-accessory-protein	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	4.33105e-94
CP027707.1\|AZC31637.1\|3952710_3952956_-\|Molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|182985	PRK11130, moaD, molybdopterin synthase small subunit; Provisional.	2.76612e-22
CP027707.1\|AZC31633.1\|3949280_3949880_-\|Nitric-oxide-reductase-activation-protein-NorE	gnl\|CDD\|239213	cd02862, NorE_like, NorE_like subfamily of heme-copper oxidase subunit III. Heme-copper oxidases include cytochrome c and ubiquinol oxidases. Alcaligenes faecalis norE is found in a gene cluster containing norCB. norCB encodes the cytochrome c and cytochrome b subunits of nitric oxide reductase (NOR). Based on this and on its similarity to subunit III of cytochrome c oxidase (CcO) and ubiquinol oxidase, NorE has been speculated to be a subunit of NOR.	3.44643e-61
CP027707.1\|AZC31622.1\|3939027_3940554_-\|Anaerobic-nitric-oxide-reductase-transcription-regulator-NorR	gnl\|CDD\|235331	PRK05022, PRK05022, nitric oxide reductase transcriptional regulator NorR.	0
CP027707.1\|AZC31629.1\|3944945_3946781_-\|Nitric-oxide-reductase-activation-protein-NorD	gnl\|CDD\|226921	COG4548, NorD, Nitric oxide reductase activation protein [Inorganic ion transport and metabolism].	1.1094e-162
CP027707.1\|AZC31634.1\|3949863_3950655_-\|Nitric-oxide-reductase-activation-protein-NorQ	gnl\|CDD\|336785	pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.	1.33866e-41
CP027707.1\|AZC31619.1\|3935920_3937156_-\|Molybdopterin-molybdenumtransferase	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	5.98127e-172
CP027707.1\|AZC31621.1\|3937816_3938464_-\|Pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|273138	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from Pfam but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine].	5.46656e-101
CP027707.1\|AZC31625.1\|3941932_3943123_-\|NnrS-protein	gnl\|CDD\|225754	COG3213, NnrS, Uncharacterized protein involved in response to NO [Inorganic ion transport and metabolism].	1.29202e-82
CP027707.1\|AZC31635.1\|3950811_3952170_-\|Coproporphyrinogen-III-oxidase,-oxygen-independent	gnl\|CDD\|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	1.03877e-113
CP027707.1\|AZC31636.1\|3952262_3952706_-\|hypothetical-protein	gnl\|CDD\|225934	COG3399, COG3399, Uncharacterized protein conserved in bacteria [Function unknown].	2.72514e-23
CP027707.1\|AZC31624.1\|3941462_3941903_-\|hypothetical-protein	gnl\|CDD\|225934	COG3399, COG3399, Uncharacterized protein conserved in bacteria [Function unknown].	3.0402e-21
CP027707.1\|AZC31632.1\|3949009_3949270_-\|Nitric-oxide-reductase-activation-protein-NorF	gnl\|CDD\|377083	pfam03626, COX4_pro, Prokaryotic Cytochrome C oxidase subunit IV. Cytochrome c oxidase (COX) is a multi-subunit enzyme complex that catalyzes the final step of electron transfer through the respiratory chain on the mitochondrial inner membrane. This family is composed of cytochrome c oxidase subunit 4 from prokaryotes.	3.72009e-05
CP027707.1\|AZC31630.1\|3947039_3948467_-\|Nitric-oxide-reductase-subunit-B	gnl\|CDD\|225795	COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion transport and metabolism].	8.05586e-163
CP027707.1\|AZC31620.1\|3937152_3937719_-\|Molybdenum-cofactor-biosynthesis-protein-MoaB	gnl\|CDD\|131715	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B., molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	9.1607e-100
CP027707.1\|AZC31623.1\|3940704_3941421_+\|Repair-of-Iron-Centers-di-iron-protein	gnl\|CDD\|236812	PRK10992, PRK10992, iron-sulfur cluster repair protein YtfE.	1.34241e-119

>CP027707.1|AZC31628.1|3944371_3944566_+|hypothetical-protein
MSAGPVCLYCQQSNPPRQSSCRHCGMPLPATAAHAEQRRLRRFGWFCIGLTVFCVAMFFWLPRS
>CP027707.1|AZC31627.1|3943691_3944375_+|Nitric-oxide--responding-transcriptional-regulator-NnrA-(Crp/Fnr-family)
MVLHRVHHQILRSHHLFEPLNEEQLDELMAASQLLSIDKGDPLFRQGEPAEAFYFVIAGAVKVYRLTPDGQEKVFEVIGPRQTFAEAMMLMDTPDYVASAEAIGPTQLYRLSNDTYLRLLQSNSRLTFALLGKLCMRLHQRVNEIETLSLKNATHRVVRYLLTQLMQLQPVERRFELPMAKQLIAGHLAIQPETFSRIIRRLIDEKIISQDGRQIVILDRPRLEQFE
>CP027707.1|AZC31626.1|3943437_3943653_+|hypothetical-protein
MTTPLEIPRIQGAWRLARVLLNTDHPHPSRITGAIMNTAGAALKKAIQPLTWFVVLGAILALASRVALDLV
>CP027707.1|AZC31625.1|3941932_3943123_-|NnrS-protein
MQVLDRRAAMAIVPLLRLAFRPFFLAGCVLALLVVPLWLTALQGALGDWQPAGGWLGWHRHELLFGFGLAIIAGFLLTAAQTWTGQPGLSGKPLAALALLWLAARLAWLGSVPWPLLAVLELGFPLALAGLMGRMLWKVRQQRNYPIVLVLLLLAAADGLSVAGLLQGHEGWQRQGVLSGLWLVAAMMSLIGGRVIPFFTQRGLGRVAAVAPWPWLDYLVLVGAALVALLYAAGPALVANTWVGALFLLLAAAHLLRLWRWQDRGLWRVPLLWSLHLAYGWLALACLGMALWHFGAPLNPSLALHGLTIGAMAGLILAMIARVSLGHTGRPLEPPAGMTLAFILLNLACLSRVLLVLWLPVAALWLAGLCWALAFALYVWRYGPMLLRARVDGHPG
>CP027707.1|AZC31624.1|3941462_3941903_-|hypothetical-protein
MLYPWLVVTHLLAAIAFIGTLFFEVCIWHSARRQLASDAQVAADQAIAVRSRKVLHGVVLLLYGAGIGLAWQHRGVLSQPLGSSFASLLSLKIMLALSIIGHYLLLAYWLKTARLSAGRACWIRRSVLGHMLLIVVLAKAMFYWHG
>CP027707.1|AZC31623.1|3940704_3941421_+|Repair-of-Iron-Centers-di-iron-protein
MNPTLLERPGLSQPDASKHNLLEQSLGQLACDIPGASRVFHEFNLDFCCGGQKTLRDAALGKGLDPVQIAEALHLLQDSAARQHDWRDEPSEQLIAHILTRYHARHREQLPELIRLACRVEQVHSARNTCPNGLADHLRDMQQELEGHMLKEEQVLFPMLQQGLGRRAAPPIHVLRLEHDQHGEALEKLLVLTDHITPPADACNTWRALYRGLSEFRDDLMQHIHLENNVLFVNALNA
>CP027707.1|AZC31622.1|3939027_3940554_-|Anaerobic-nitric-oxide-reductase-transcription-regulator-NorR
MLRESLAADLIVELPNAVRLQRLVQTLREYFKAGAVGLLRLDDDSLRPLATVGLVHEALGRRFVIAQHPRLAAIMASREPTWFEPDSRLPDPYDGLLDHPDNGPLAVHDCMGVSLYVEGRVWGAITLDALRPGTFDRQARDELKRCSLQIEAALRVTRLEQENRSLRLSRSEPQDARGPVEEGEILGQSEVLHQLLNELDVLADSELPVLLLGETGVGKELFARRLHRLSRRAHKPLVQVNCAALPESLAESELFGHVKGAFSGATSDRAGRFDAANGGTLFLDEVGELPLSVQAKLLRTLQNGEIQRLGADKPLHVDVRIIAATNRHLPDSISEGLFRADLYHRLSVYPVPIPPLRERGPDVLMLAGHFLELNRSRLGLRGLRLSPAAERALLAYPWPGNVRELEHVISRAGLKQLSRGGSRSLILTLEPDVLDLDSSVKGAEPLEQSPQAADDGPFQPLSEAVDDCQRQKIHQALSRCRNNWVRAARLLEVDPSNLHKLARRLRLK
>CP027707.1|AZC31621.1|3937816_3938464_-|Pyridoxamine-5'-phosphate-oxidase
MPLSLAQMRRNYCRDGLSDEAAPDDPLPLFQQWLQQARDTEQAPVEANSMCLATVDEQGQPHCRVLLLKGLSAEGFTFFGNYQSAKGLELAANPRAAMTFFWPALERQVRIEGQVSRLAPRLSDVYFDSRSLASRLGAWASPQSQPLANRLQLESLLATTTSRFDGQPLPRPEHWGGYCLRPQRMEFWQGRSDRLHDRLDYRLHEGIWRHGRLAP
>CP027707.1|AZC31620.1|3937152_3937719_-|Molybdenum-cofactor-biosynthesis-protein-MoaB
MAHLAQRTFHPLNIAVLTISDTRTLDTDTSGQTLSDLLQSAGHVLIDRGLVPDDIYQIRARVSQWIADPEVQVVLMTGGTGFTARDNTPQAVLPLLDKHVEGFGELFRQVSVEEIGMSSLQSRALAGVSNGVLVVCVPGSPGACRTAWNMILRPQLDSRTGPCNFAPHLKPQPHQEPQQQIEACGVRP
>CP027707.1|AZC31619.1|3935920_3937156_-|Molybdopterin-molybdenumtransferase
MTGCGCDSGQLIPVDQAIAHLLDQVPPPPTTQSIALEQALGRVLAADIHSPLNLPGWDNSAMDGYALRAADLPSTGGRLTLGGRIAAGQAADTPLAAGQAVRIFTGAPLPPGADTVVPQESCRVEDGQLCLPPVTVGDHVRQQGEEVGRGDLLLKAGKRLRAQELGLLAAAGIARVEVYRPLRVCLLSSGDELREPGQPLAPGQIYNSNRYCLSALLRGWGVEVHDYGVMADELAASRHALSLASSECDLLLTSGGVSVGEEDHLKQAIEELGNVDFWRLAIQPGKPLAFGEVAGKPWIGMPGNPSAALVTALVVVRPFLLRAQGVTDVLPRPMALPAGFEWLQRNRRRQYLRARLVPGEDAQARVQLHPQQSSAMLSAACWADGLALVECERQVRLGDPVPFLSFAELMQ
>CP027707.1|AZC31629.1|3944945_3946781_-|Nitric-oxide-reductase-activation-protein-NorD
MAFTLELEEWVGSVWHRFITRRASVDFPEARVELAPRQRSLALLLRAMGGDGRGVEAASERDLLLRRSLLQQIAGTCRQLPLAWCDADNLRLPASLAVFPEAALNEELYRWLALLAAQSGPMRHWGRDNQRWTRRLLQRYPALRDRYQRLVEAHLQLRPDPASLSRPEAALERALCQALREPGSVAEFPRSERAAWPVPLWLYPPLHLASPLAADLEDSPEDLATTAGEQPGGRKRASRVEDQSRDGGLLIVRLENLFSWTEHVDLDRWADDSEDPDAARVAADLDELTLSRTRLRKGGGLKLHLDLPPAEVDDIPLGEGIHLPEWDYRKGRLQEDLVNLQMLVPRDCQAQPLPSRLKPSAQLLRRQFQQLRNDRQWLRQQPQGAELDMQAWLDFHVERAHGACAERGLFMEQRQTRRDLACLLLADVSMSTDAHLNDEHRVIEVIRDSLLLFGETLAGLGDDFALYGFSSLRRQQVRMQELKAFHQRYDDHTRGRIQGLKPGFYTRMGAAIRQATRLLAGCKRQRKLLLLLTDGKPNDLDLYEGRYGVEDTREAVLEARRQGLTPFCITIDREAAAYLPYMFGANGYTLIRQPEQLPLRLPQLYRQLTQP
>CP027707.1|AZC31630.1|3947039_3948467_-|Nitric-oxide-reductase-subunit-B
MRLANPHLKFASQAVAKPYFVFALMLFLGQVLFGLIMGLQYVIGDFLFPIIPFNVARMVHTNLLIVWLLFGFMGAAYYLIPEEADRELHSPKLALLLFWVFAAAGVLTILGYLLVPYAGLARLTHNELLPTMGREFLEQPTITKMGIVVVCLGFLYNIGMTLLKGRKTTVSMVMMTGLIGLAVFFLFSFYNPANLARDKFYWWWVVHLWVEGVWELIMGAMLAFVLIKITGVDREVVEKWLYVIIAMALISGIIGTGHHFFWIGAPEVWLWVGSIFSALEPLPFLAMVVFAFSMVKNRRRQHPNRAATLWAKGTTVTAFFGAGVWGFLHTLAPVNYYTHGTQLTAAHGHLAFYGAYAMIVMTLISYAMPRLRGLGEAADERSQTLEVWGFWLMTLSMVMITLLLTAAGVVQVLLQRWAEDGTAMPFMATVEHLSGLFWARLISGLGFFAGLLCYLLSFRQRGRAALRAPAPVVSS
>CP027707.1|AZC31631.1|3948470_3948911_-|Nitric-oxide-reductase-subunit-C
MSETFTKGMARNIYFGGSVFFFLIFLALTYHTEQTFPVRSNDALLSAAVVRGKTVWEQNNCIGCHTLLGEGAYFAPELGNVFQRRGGEEGFKPFLQAWMKMQPLGVPGRRAMPQFNLSQQEVDDIAEFLKWSSKINTNGWPPNKEG
>CP027707.1|AZC31632.1|3949009_3949270_-|Nitric-oxide-reductase-activation-protein-NorF
MSVGRFLLSCWAALAGLSVGTVWLGSWLGQGAPRGVALLILLLAVAKAWLIADGFMELRHGPRLWRWLLLGWPLALALLLGLILSL
>CP027707.1|AZC31633.1|3949280_3949880_-|Nitric-oxide-reductase-activation-protein-NorE
MCTSAEAAAVTNKTPRRHLPGDLAMWFFILAELSVFAILILAFAVTQQLKPQLFAESRQLLDSSTGLAMTLSLLSAGLLAALAQERVRRARPRQGAALLLAALLVATVYLLLKLGEYRHLLGLGLGLEHNTFFTLYWILTGFHFLHVLLGMLIFAWLAQRCLRGRYGVDNPSGFESGVLYWHMVDLVWVLLFPLVYVLD
>CP027707.1|AZC31634.1|3949863_3950655_-|Nitric-oxide-reductase-activation-protein-NorQ
MDLGTACEPFYQPLNNEQALFEQAWRHGMPVLIKGPTGCGKTRFVQHMAHRLNLPLHSVACHDDLSAADLIGRHLIGAQGTWWQDGPLTRAVREGGICYLDEVVEARQDTVVVLHPLADGRRELFLERTGEVLRAPPSFMLVVSYNPGYQNLLKGMKPSTRQRFVAMRFDYPPPAEEERIVQREAQVDAALARQIVGLGQALRRLEQHDLEEVASTRLLIFTARMIGAGMPPREACLACLAEPLSDDPVTVAALMDVVDVHFG
>CP027707.1|AZC31635.1|3950811_3952170_-|Coproporphyrinogen-III-oxidase,-oxygen-independent
MPDLLPHRSEPIVRRDQGVLDPNCHADTRRFHGGIGSLDLLRALRGSRQKRRPLSLNVQFPPRLAGTPVDAGESYLRRLEREIDLVGCHLGPEQRIEQFHLGGGTPEAAQLQRLMQHLRQRFHFLEHDCGDYSIDVDLHHTDWATMGLLRDQGFNQVSIGVPDIGIDSQLSVACYQNPAPIHSLIDAARTFGYRSVNVDLGYGHAWQTPESFALKLSTLIELEPDRLQVFDYAQPPLRYRRQSQDRPAAACGQDAKEAMRRICFERLLAAGYQYIGLGQFVRPDDDLMMAQERGRLRRNCQGFTCHGYCDHVGFGLGAISQFDELYTQNSERLDDYLQQLDLGQLATCRGWRCEAGDQVRQLVMERLACDLELDILAIESRYGLIFRQYFASAWLRLQQLSWNGLVEVSERFISILPAGRLEVDSICQLFQEDRSSPGQAAGCACVEPDSGR
>CP027707.1|AZC31636.1|3952262_3952706_-|hypothetical-protein
MIYPLLLSLHLLAALVFIGTVFFEVLFLENIRKQLPAKLMVLLEQGIADRARQLMPWVLLVLFGAGLGMVWVRYLPVLAAPLASSFGTLLMLKILLAASVLGHFLVAMLLFRSGRMNARYSRFIHHSLFGHMLLIVLLAKAMFYLNW
>CP027707.1|AZC31637.1|3952710_3952956_-|Molybdopterin-synthase-sulfur-carrier-subunit
MRLQVQYFSRYRETLGCASEVVEGDFACLEHLRRHLASRCGIWRVLDEPSLMCARNQDMCGLDEALDDGDEVAFFPTVTGG
>CP027707.1|AZC31638.1|3952952_3953453_-|Cyclic-pyranopterin-monophosphate-synthase-accessory-protein
MNEAPMTDAVLTHLDSLGRARMVDVTDKHVTFREAVAEAWVHMRAETARLIVGGGHPKGDVFAVARIAGIQAAKRTSELIPLCHPLLLSSVVVELSLEDEHRVRIVSRCKLAGQTGVEMEALTAASIAALTLYDMCKAVDRSMHIESVRLLRKSGGKSGDYQAPSA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP027707_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027707_3

5671293-5671449

Orphan

Consensus_repeat	Method
CAGACACACCGCATTGCCTGCATCGCCGGCAAGCCTGGCTCCTACAGAAGCCAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027707_3

>merge|CP027707|3|5671293-5671449|CRISPRCasFinder
CAGACACACCGCATTGCCTGCATCGCCGGCAAGCCTGGCTCCTACAGAAGCCAGGCCGCCACGGACTTGTAGGAGCGAAGCTTGCTCGCGATAGCGGCACTCCAGACACACCGCGTTGCCTGCATCGCCGGCAAGCCTGGCTCCTACAGAAGCCAGG

>CP027707|3|3|5671293-5671449|CRISPRCasFinder
CAGACACACCGCATTGCCTGCATCGCCGGCAAGCCTGGCTCCTACAGAAGCCAGG	CCGCCACGGACTTGTAGGAGCGAAGCTTGCTCGCGATAGCGGCACTC
CAGACACACCGCGTTGCCTGCATCGCCGGCAAGCCTGGCTCCTACAGAAGCCAGG

Protein	Signature genes	Signature genes Name	Protein_function
CP027707.1\|AZC33121.1\|5675243_5676161_+\|Transcriptional-activator-MetR	unknown	unknown	gnl\|CDD\|176132
CP027707.1\|AZC33123.1\|5676743_5677382_-\|Putative-threonine-efflux-protein	unknown	unknown	gnl\|CDD\|224199
CP027707.1\|AZC33128.1\|5680030_5680831_+\|Transcriptional-regulator,-LuxR-family	unknown	unknown	gnl\|CDD\|225360
CP027707.1\|AZC33116.1\|5666927_5668055_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379214
CP027707.1\|AZC33120.1\|5672822_5675135_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-methyltransferase	unknown	unknown	gnl\|CDD\|235367
CP027707.1\|AZC33112.1\|5662915_5663698_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377682
CP027707.1\|AZC33115.1\|5666031_5666913_+\|putative-esterase	unknown	unknown	gnl\|CDD\|224561
CP027707.1\|AZC33124.1\|5677409_5677844_-\|Nudix-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|240046
CP027707.1\|AZC33109.1\|5660846_5661221_+\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	unknown	unknown	gnl\|CDD\|235094
CP027707.1\|AZC33129.1\|5680960_5682580_+\|Ferredoxin-dependent-glutamate-synthase	unknown	unknown	gnl\|CDD\|239202
CP027707.1\|AZC33114.1\|5664640_5666035_+\|Aminotransferase,-class-III	unknown	unknown	gnl\|CDD\|223238
CP027707.1\|AZC33125.1\|5677902_5679270_-\|Response-regulator	unknown	unknown	gnl\|CDD\|225971
CP027707.1\|AZC33127.1\|5679903_5680032_-\|hypothetical-protein	unknown	unknown	unknown
CP027707.1\|AZC33113.1\|5663928_5664648_+\|2-hydroxy-3-keto-5-methylthiopentenyl-1--phosphate-phosphatase	unknown	unknown	gnl\|CDD\|319826
CP027707.1\|AZC33118.1\|5669832_5671230_+\|Two-component,-Sigma-54-Specific,-central-transcriptional-regulator-of-acidic-amino-acid-uptake	unknown	unknown	gnl\|CDD\|225114
CP027707.1\|AZC33122.1\|5676193_5676703_-\|Acetyltransferase,-GNAT-family	unknown	unknown	gnl\|CDD\|366181
CP027707.1\|AZC33111.1\|5661774_5662641_-\|fatty-acid-desaturase,-putative	unknown	unknown	gnl\|CDD\|366126
CP027707.1\|AZC33110.1\|5661252_5661651_+\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	unknown	unknown	gnl\|CDD\|185011
CP027707.1\|AZC33126.1\|5679529_5679802_-\|LSU-ribosomal-protein-L31p	unknown	unknown	gnl\|CDD\|234969
CP027707.1\|AZC33117.1\|5668051_5669836_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236901

Protein	Function_ID	Function_description	E-value
CP027707.1\|AZC33121.1\|5675243_5676161_+\|Transcriptional-activator-MetR	gnl\|CDD\|176132	cd08441, PBP2_MetR, The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold. MetR, a member of the LysR family, is a positive regulator for the metA, metE, metF, and metH genes. The sulfur-containing amino acid methionine is the universal initiator of protein synthesis in all known organisms and its derivative S-adenosylmethionine (SAM) and autoinducer-2 (AI-2) are involved in various cellular processes. SAM plays a central role as methyl donor in methylation reactions, which are essential for the biosynthesis of phospholipids, proteins, DNA and RNA. The interspecies signaling molecule AI-2 is involved in cell-cell communication process (quorum sensing) and gene regulation in bacteria. Although methionine biosynthetic enzymes and metabolic pathways are well conserved in bacteria, the regulation of methionine biosynthesis involves various regulatory mechanisms. In Escherichia coli and Salmonella enterica serovar Typhimurium, MetJ and MetR regulate the expression of methionine biosynthetic genes. The MetJ repressor negatively regulates the E. coli met genes, except for metH. Several of these genes are also under the positive control of MetR with homocysteine as a co-inducer. In Bacillus subtilis, the met genes are controlled by S-box termination-antitermination system. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.93436e-124
CP027707.1\|AZC33123.1\|5676743_5677382_-\|Putative-threonine-efflux-protein	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	5.54499e-47
CP027707.1\|AZC33128.1\|5680030_5680831_+\|Transcriptional-regulator,-LuxR-family	gnl\|CDD\|225360	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription].	6.53497e-17
CP027707.1\|AZC33116.1\|5666927_5668055_+\|hypothetical-protein	gnl\|CDD\|379214	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions.	6.98803e-06
CP027707.1\|AZC33120.1\|5672822_5675135_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-methyltransferase	gnl\|CDD\|235367	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional.	0
CP027707.1\|AZC33112.1\|5662915_5663698_-\|hypothetical-protein	gnl\|CDD\|377682	pfam06629, MipA, MltA-interacting protein MipA. This family consists of several bacterial MltA-interacting protein (MipA) like sequences. As well as interacting with the membrane-bound lytic transglycosylase MltA, MipA is known to bind to PBP1B, a bifunctional murein transglycosylase/transpeptidase. MipA is considered to be a structural protein mediating the assembly of MltA to PBP1B into a complex.	4.77614e-32
CP027707.1\|AZC33115.1\|5666031_5666913_+\|putative-esterase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	3.80821e-22
CP027707.1\|AZC33124.1\|5677409_5677844_-\|Nudix-hydrolase-family-protein	gnl\|CDD\|240046	cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	5.55331e-48
CP027707.1\|AZC33109.1\|5660846_5661221_+\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	gnl\|CDD\|235094	PRK02971, PRK02971, 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional.	4.20795e-06
CP027707.1\|AZC33129.1\|5680960_5682580_+\|Ferredoxin-dependent-glutamate-synthase	gnl\|CDD\|239202	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.	5.43077e-176
CP027707.1\|AZC33114.1\|5664640_5666035_+\|Aminotransferase,-class-III	gnl\|CDD\|223238	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism].	1.092e-107
CP027707.1\|AZC33125.1\|5677902_5679270_-\|Response-regulator	gnl\|CDD\|225971	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms].	2.55096e-86
CP027707.1\|AZC33113.1\|5663928_5664648_+\|2-hydroxy-3-keto-5-methylthiopentenyl-1--phosphate-phosphatase	gnl\|CDD\|319826	cd07524, HAD_Pase, phosphatase, similar to Bacillus subtilis MtnX; belongs to the haloacid dehalogenase-like superfamily. Bacillus subtilis recycles two toxic byproducts of polyamine metabolism, methylthioadenosine and methylthioribose, into methionine by a salvage pathway. The sixth reaction in this pathway is catalyzed by B. subtilis MtnX: the dephosphorylation of 2- hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HKMTP- 1-P) into 1,2-dihydroxy-3-keto-5-methylthiopentene. The hydrolysis of HK-MTP-1-P is a two-step mechanism involving the formation of a transiently phosphorylated aspartyl intermediate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.19946e-33
CP027707.1\|AZC33118.1\|5669832_5671230_+\|Two-component,-Sigma-54-Specific,-central-transcriptional-regulator-of-acidic-amino-acid-uptake	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
CP027707.1\|AZC33122.1\|5676193_5676703_-\|Acetyltransferase,-GNAT-family	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.04277e-15
CP027707.1\|AZC33111.1\|5661774_5662641_-\|fatty-acid-desaturase,-putative	gnl\|CDD\|366126	pfam00487, FA_desaturase, Fatty acid desaturase.	6.59951e-19
CP027707.1\|AZC33110.1\|5661252_5661651_+\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	gnl\|CDD\|185011	PRK15051, PRK15051, 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional.	7.55453e-08
CP027707.1\|AZC33126.1\|5679529_5679802_-\|LSU-ribosomal-protein-L31p	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	2.29455e-47
CP027707.1\|AZC33117.1\|5668051_5669836_+\|hypothetical-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	7.72102e-53

>CP027707.1|AZC33118.1|5669832_5671230_+|Two-component,-Sigma-54-Specific,-central-transcriptional-regulator-of-acidic-amino-acid-uptake
MTHNLLVVDDEPKLCDLLSSALSQDGIQVFTAGNGLHALKVLEQEEIDLVISDWRMPGMDGPQLLAEIKQRYPQIPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKALQFRDILKDNQRMRAELDEHRQFDSLVGDSPTFRQVLQAVDSVRESNATILLTGESGTGKEMVARAIHQHGNRANKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDEVGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFREDLYYRLNVFPIPLPALRERVEDIAPLARHFAHTLGATAGKRITGFSPQALQAMANYAWPGNIRELQNCVERATIVASGAVIEESDLPGYLFTSPPLNAGASPLPGDSLSVPSDLDAALAEVEKAYILAALQQSNGVQAAAAQLIGISERSFWYRLKKLGIQVDKIVR
>CP027707.1|AZC33117.1|5668051_5669836_+|hypothetical-protein
MTRKDRRPPRPFAISRWSLQRKLVLAFWMVSVIPTMIAAELAATTLSQIFDSNVRIWLQESTKIVEDEITETLRDNARIAQLFLRYAKPPTDRNAAKHDKLTADIADSMGIDVVALIRKRDHQVVFSTAADDIVGQISLAPNAVLQTLQIGGVATGAVVSTFQTTLDGNDYQLLIATYLDASFLTSVADVHSLDLRLYLAKANDFAEIFATQRFEDHPSRVPESIESILRETRQPTEQFTSRYSGLYRPIFNSNGDLVGVIFSGLLRHSSLVGLVNQSNLFILIFLLSSAASLAVGWLVSQRLTMPLRGLSKGVRAVIAGDYRQRVPVIGGDELAELSSTFNHMSERLGELQHLEAQLRRRDRLHALGEVAMGLAHEIRNPLGIIKTATQLLHRRANLPEGDKRHLEYVISEVSRINDLITDFLDFAKPSAPIRSTLLARPLVEELIGFCEPELASHKIDAQIDDQAPGATLYADARQLKQACLNLILNAIDAMPAGGRLTLGIAQDAEHTILRVTDTGQGIEPDMLERIFTPFVTTKASGTGLGLAKVFSIMENHDGHIECSSEIDAGATFSLYIPAKGDDEEDDEDEQKAQP
>CP027707.1|AZC33116.1|5666927_5668055_+|hypothetical-protein
MITSQVFSSIQAIDPSAWNDCFPGALEDWDYYLAVQNAGIEDFTWRYLAVFEDGALVAAAPAFITRYRLDTTVSGPAKRLSERLQRWWPGLLQLPLYAIGSPVAEQCHAGTASHIPAVRRQALLEQLLHLARRDADAQGIGLLAVKDAASQDRQWAASCQAFGLQAMPSLPSALLPVPFGSLDAYLGTLGKSTRKDLRRKLRAPGPRIEWRRNIDDVLPEIMRLYEATLQRSDLQFERLPAPYFTGILQQLGERAACVLYWVDQQLVAFNLVLLDEHRLIDKFFAHDLEISREHNLYFRSWMANVDYCIQHRIALYECGQAGYASKLRLGCSFTGNNLFFQHRNPLLDTLLKGLKYVLRPDRSDPAMAAALSESS
>CP027707.1|AZC33115.1|5666031_5666913_+|putative-esterase
MTAQIDLGEGIDLGEGDAGFVLGNGEVAVLLIHGLTGTPTELRRVAAGLAKAGCTVYVPTLAGHCGNNADLQATGWQDWYEGVRRTFVGIRQRHRQVFVGGLSMGAVMSMYLASEHPGQVSGLLMYSTTLKYDGWSINKLAFLTPLLMKIPFGVHICSFEEKPPYGIKNERLRAVVERQMKAGESSSAGLLTMEGVTVRELHRMNAVVKKRMPSITTPALVLHSIEDDITSRWNADYVERKLGGPVVKVLLDNCYHMITVDLQYRRVVELSADFIERQAGPRPAVYADLRQFA
>CP027707.1|AZC33114.1|5664640_5666035_+|Aminotransferase,-class-III
MSDIRIATAEDQVLLEKEAKYCSYGDTVHYIEPPRIFSRCEGSYVWDTSDQAYLDLQMWYSAVNFGYANPRLNNALKQQIDTLPQIASQYLHKGKIELSEMIAVDAKKKFGLDGRVHFNVGGSQSIEDSLKVVRNATNGKSLMFAFEGGYHGRTLGASSITSSYRYRRRYGHFGERANFIPFPYHFRGPKGMTKEEYGSHCVQQFARLFETEYNGVWDPKVGQSEYAAFYVEPIQGTGGYVIPPMNFYSELKHVLDQHGILMVVDEIQMGFYRTGKLWSIEHFDVKPDVIVFGKALTNGLNPLGGIWAREELINPKVFPPGSTHSTFASNPLGTAVGLEMFKMTSETDYGAMVMEKGKYFLAGLQDLQKRYPIIGDVDGLGLALRCEICTTDGFTPDKATLDYMVEEGMKGDIEINGQRLGLILDVGGYYKNVITLAPSLEISYAEIDLGIALLDRLLDRAMKR
>CP027707.1|AZC33113.1|5663928_5664648_+|2-hydroxy-3-keto-5-methylthiopentenyl-1--phosphate-phosphatase
MMHWHIVCDFDGTITRTDVIDNVLQRFADPSWEDIEQQWLDGHIGSRECLSRQLALVKASPAELLAYFDSVEIDPDFPDFVDHVIGLGASLEVVSDGIEQGIARILARHYVSLLPILANRLRQVDQHSWRIDFPHSSDACRAASGNCKCKSTPKGKRVLVIGDGQSDMCVASSADFVFAKGRLAEYCQRNAIPHATFDSFAELPALLALLPNEAANANAFALDNTTEHSVHTQELFHHV
>CP027707.1|AZC33112.1|5662915_5663698_-|hypothetical-protein
MFSFTRSALFAVLLILGATSGAFAEDGGQDGLSGSLGLGIGYQPHDPSGSRHDTVPLPYVDLEWGDVSLDTDDGLTWDAFKGNGFSAGPYINYLPGRNANGSLRGLRDVPNMADVGGYIQYAPDDFWRLFASLGSAVAAGEGQGGLLGKIGGEIGYPLGLGIIGSNNLTAHFADARQTQTFFGVSDAEAQATGIGRYSAGGGLQNLTLTQNLQVPLGGNWSWMTSASWIHLTGSAADSTLVRERGEVNQGQVQTALSYQF
>CP027707.1|AZC33111.1|5661774_5662641_-|fatty-acid-desaturase,-putative
MARPAYRLLAHSLWDIVPILMALVHFSFVLWLVLAFHSLSWWVILPAALLYAVSLSWSINSISHNQIHNAYFSLPWLNRAFDLLLSVTIGFSQTLYRDIHNRHHRGNSDRPGADGTTVDPLSIYLHGRNGQPDNVWAYTFLSFFRDDPKAIYQEMQRKRPADARWVKVEVGMTVLAYVALALYDWHALLVLLPFWYLGQSLSSLNGYYEHLGGNPDLPIAWGVSSYSRLYNLIWMNNGYHAEHHYRPKMHWTRVKAFHREIREQQQAAGVKVIPLAHGLGFLLKHPKR
>CP027707.1|AZC33110.1|5661252_5661651_+|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily
MTAQTHGWLHGRLGTLVLWALLIGFESAGQIATKVGGDQLGQMDFNLQWLAAVAVNPGVLLAIACYIGAFFVWMLILRRSSLSLAFPLSSLVFVVVLLGSWLGLGEQISLLHWVGVFVIIGGIALLAEGEEA
>CP027707.1|AZC33109.1|5660846_5661221_+|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily
MTLTVILLVAFSIVLDVIGQLCFKLGLDRLPELEGGFRLNAFWGQVFNAPLLWCGIGAYVIEFFVWLEALSRAPLSLLFPAAALAYCGVVLAGKLVLGENVSRRRWLGTLVITLGVMLVYVAST
>CP027707.1|AZC33120.1|5672822_5675135_-|5-methyltetrahydropteroyltriglutamate---homocysteine-methyltransferase
MALAHTLGFPRIGADRELKKALESYWKGDLDRQALQDVGRQLRARHWQLQKDAGIDLLPVGDFAWYDQVLTQSLAFGVVPERFDSSKDAQGRPTLDTLFAMARGASAGCCGGEHAKTQYAQELTKWFDTNYHYLVPEFSADQSFKLSWEQLFDEVDEAHALGHRVKPVIIGPLTYLWLGKAKGNDFNKLELLERLLPVYGEILNRLKAQGVEWVQIDEPILTLDLPQEWKGAFERAYHILQYSPLKKLVATYFSGLQDNLGLAVGLPVDGLHIDAVRAPEQLTQVLDRLPTYKILSVGLVNGRNVWRCELEQALQQLQAAQERFGDNLWVSSSCSLLHSPVDLSREDQLDAELKSWLAFAVQKCGEISVLRDALNHPQAPAVQAALAESRQVQASRARSPRIHKAEVQARLKAVSAADSQRHSPFAQRIAQQHARLKLPVFPTTTIGSFPQTASIRLARQTFKQGKLSNNDYTDAMRCEIRHAVQVQERLGLDVLVHGEAERNDMVEYFAEQLDGYLFTRFGWVQSYGSRCVKPAVIYGDLSRPQAMTVDWISYAQSLTDKVMKGMLTGPVTMLMWSFPREDVSREVQARQLALALRDEVVDLEKAGIKIVQIDEAAFREGLPLRRADWQAYLDWAVEAFRLTASGVRDETQIHTHMCYSEFNDVIQAIAAMDADVITIETSRSDMELLEAFEAFDYPNDIGPGVYDIHSPRVPDTAEMVKLMSKAVRRIPAERLWVNPDCGLKTRAWPETEAALVNMVAAARQLRNQQA
>CP027707.1|AZC33121.1|5675243_5676161_+|Transcriptional-activator-MetR
MLEIRHLKTLHALREADSLVEAAERLHLTQSALSHQFKELEERMGMPLFVRKTKPVRFTSAGLRLLQLADATLPLLRAAERDISRLAGGTAGRLHMAIECHSCFQWLMPTIDQFRDAWPEVELDLASGFSFAPLPALARGDLDLVVTSDPVELAGITYVPLFTYEAMLAVANQHRLASKPYIVPEDLLSETLITYPVERDRLDIFTRFLEPADIEPAQVRTSELTVMMMQLVASGRGVCGMPHWALHEYSSRGYVKAKRLGEKGLFATLYAAIRADMLDAPYMRDFLLTAKDTSFSTLDGVSAVR
>CP027707.1|AZC33122.1|5676193_5676703_-|Acetyltransferase,-GNAT-family
MSIQRLDASHATAYRALMLEAYEHHPQAFTSSVAERAAMPLSWWESRLSSPLDLLLGAFEDGELVGIVGLAFEVREKARHKATLFGLYVAQPYRHSGLGYRLVQALLQEARQRPGVRLVQLTVTAGNEAALVLYQRCGFVQFGLEPLAVRVGVEYFDKLHLWREVISPL
>CP027707.1|AZC33123.1|5676743_5677382_-|Putative-threonine-efflux-protein
MIPLHDMLIFIAAALLMVLTPGPNMIYLISRSICQGRRAGVTSLVGVVAGFFVHLFAAAIGLTAVFMAVPVAYEVLKWVGALYLMWLAWQALKPGARSPFEAQQLPPDSSRKLILMGFLTSALNPKIAVFYLSVFPQFISPEHGSVFTQSIILGLTQISVSFSVNLLIALFASGIAAWFVHNPLWLATQRYFMGFVLAGLAVRLLLEQRQTA
>CP027707.1|AZC33124.1|5677409_5677844_-|Nudix-hydrolase-family-protein
MTLSSATSPIIRIAAALLIGPDGRTLLVRKRGTQAFMQPGGKIEPSELPAQALARELEEELGLRIDPADARYLGRFSAPAANEPGFVVEAELFRLDLDTNEVQPAAEIEEVCWVDPQVADELTLAPLTRDLILPFYRASQLASA
>CP027707.1|AZC33125.1|5677902_5679270_-|Response-regulator
MGEPSVANSPRLSGVLLVDEQPGVLERLRHLLRHEPYALHLATSGAEALQIMAREPIDLLLSSARLPQMDGVTLLARVHQDYPHTTRILLTGESDLALIVKAINEGQVYRYLSKPWSDEEMLLTLRQSLAHQHSERERLRLEELIHEQNSELKTLNAALEKRVEARTAELQQTADMLDLAYEELKHSYATSTELFSLLVNQRLPPSRQTNRQIIELVRAYCKVHGVDEGGSRDLGMAAALYNIGKLGWSDSMMIAPADLLHHPERERYRDYPKQSESLLMTLEPMQDAARLILHHQEHWDGSGFPDHLKGEAIPFGSRLLKLAVDFIELQRGLILERHMNSDEALVYIRKYAGRLYDPQLVEDFIQVCAVYLRDVTLGDPSVKVLGSRELQEGMVLARNLNADNGMLLLNAGKVLNGPLLDKLIAYEAMEGARYSIFVKLPEEPGVLKKQAPTVS
>CP027707.1|AZC33126.1|5679529_5679802_-|LSU-ribosomal-protein-L31p
MKANIHPAYRTVLFHDTAADVYFLIGSTVDTDRTQRHSDGNTYPYVALDVSSASHPVYTGQQRKTQSEGRIAGFNKRFASFGSSGKTGNA
>CP027707.1|AZC33127.1|5679903_5680032_-|hypothetical-protein
MDSAFFGVPRRPISGRLLLRILAPGLAVGKRERLMPGVAEGR
>CP027707.1|AZC33128.1|5680030_5680831_+|Transcriptional-regulator,-LuxR-family
MTLSLEDIAWHRSVGQLIDALDRPNFWTLLVRQLEQYLGFDSWVALLFSNEQAPRVFAECPGADGSPDQLFQDYLNGLYLLDPFYLASREQPGTGLYHLAEVAPEDFERTEYYQRYFRLNLVADEVHFNCQLDGERTLCLSLGARQRFTPQQLALLSLIQPWVVSLLRQRLAHEPLEQPDAGTPNPGGNWRNRLEDSLQRLKGTQLTARELEVGHLMLSGCSSKEIARKLQISAETVKVHKKHIYGKLGIKSQSELFSIFLQAQNA
>CP027707.1|AZC33129.1|5680960_5682580_+|Ferredoxin-dependent-glutamate-synthase
MSLSLLSRYAFFAACVIFTLASLPFLEHDWLWPITLVTALLSLLGIFDLLQSPHAVRRNYPILGNIRYLVEGIRPEIRQYLLESDSEALPFSRAQRSLVYSRAKNESADKPFGTLIDVYQSGFEFIGHSMRPAPLSDPSTFRVTVGGPQCKQPYSASVFNISAMSFGSLSANAIRALNQGAKLGNFAHDTGEGSISPYHRENGGDLTWELGSGYFGCRTSDGHFDPERFAQQAQNPQVRMIEIKVSQGAKPGHGGILPKHKVTQEIADTRGVRMGEDCISPSSHSAFSTPIEMMHFIQQLRELSGGKPVGFKFCLGHPWEFMGIAKAMLETGILPDFIVVDGKEGGTGAAPVEFTDHIGAPMREGLLFVHNTLVGLNLRDKIKLGASGKIVSAFDIASVLAIGADWANSARGFMFAIGCIQSQSCHTNKCPTGVATQDNLRQRALVVPDKAQRVFSFHRNTLKALAEMLAAAGLQHPSQLEARHLVRRMSATEIKLFSQLHVFLKPGELLTGAVTGEFYSRMWQLARADSFEPNNEAAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1331926 : 1423182

Pseudomonas_phage(41.51%)

tRNA,protease,plate,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZC29185.1\|1331926_1333279_+\|protease	Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage	NA	NA	NA	NA
AZC29186.1\|1333353_1335744_+	Outer membrane protein assembly factor YaeT	NA	NA	NA	NA
AZC29187.1\|1335789_1336293_+	Outer membrane chaperone Skp, precursor	NA	NA	NA	NA
AZC29188.1\|1336296_1337352_+	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	NA	NA	NA
AZC29189.1\|1337461_1337902_+	3-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
AZC29190.1\|1337898_1338675_+	Acyl-ADP--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA
AZC29191.1\|1338677_1339808_+	Lipid-A-disaccharide synthase	NA	NA	NA	NA
AZC29192.1\|1339819_1340452_+	Ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	4.4e-28	39.5
AZC29193.1\|1340521_1344046_+	DNA polymerase III alpha subunit	A0A0K1Y906	Streptomyces_phage	5.2e-195	37.4
AZC29194.1\|1344186_1345134_+	Acetyl-coenzyme A carboxyl transferase alpha chain	NA	NA	NA	NA
AZC29195.1\|1345238_1346567_+\|tRNA	tRNA(Ile)-lysidine synthetase	M1I0X1	Paramecium_bursaria_Chlorella_virus	2.9e-05	25.3
AZC29196.1\|1346612_1346756_+	hypothetical protein	NA	NA	NA	NA
AZC29197.1\|1346841_1348473_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	6.9e-158	53.5
AZC29198.1\|1348478_1349324_+	2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase	E3T537	Cafeteria_roenbergensis_virus	2.7e-49	42.8
AZC29199.1\|1349481_1350771_+	Enolase	A0A1X9I5Z8	Streptococcus_phage	9.0e-137	59.2
AZC29200.1\|1350943_1351222_+	Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	NA	NA	NA	NA
AZC29201.1\|1351218_1351926_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
AZC29202.1\|1352080_1352977_-	Transcriptional regulator, LysR family, in formaldehyde detoxification operon	NA	NA	NA	NA
AZC29203.1\|1353083_1354196_+	S-(hydroxymethyl)glutathione dehydrogenase	E3SJ82	Synechococcus_phage	1.1e-29	27.2
AZC29204.1\|1354204_1355050_+	S-formylglutathione hydrolase	NA	NA	NA	NA
AZC29205.1\|1355102_1355576_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AZC29206.1\|1355572_1356631_+\|tRNA	tRNA pseudouridine(13) synthase	NA	NA	NA	NA
AZC29207.1\|1356618_1357368_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.3e-68	52.6
AZC29208.1\|1357367_1358045_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	8.9e-43	52.0
AZC29209.1\|1358254_1359088_+	Murein hydrolase activator NlpD	A0A0S2SXL7	Bacillus_phage	6.3e-06	33.3
AZC29210.1\|1359194_1360199_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
AZC29211.1\|1360700_1361024_-	4Fe-4S dicluster domain	NA	NA	NA	NA
AZC29212.1\|1361166_1363746_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.1e-27	22.6
AZC29213.1\|1363942_1364668_+	Transcriptional regulator	B5TK58	Pseudomonas_phage	2.9e-124	91.0
AZC29214.1\|1365406_1365988_+	hypothetical protein	NA	NA	NA	NA
AZC29215.1\|1366090_1366438_+	Holin	B5TK61	Pseudomonas_phage	7.7e-51	87.7
AZC29216.1\|1366604_1367369_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	2.6e-06	26.3
AZC29217.1\|1367851_1368100_+	hypothetical protein	NA	NA	NA	NA
AZC29218.1\|1368208_1368850_+	hypothetical protein	B5TK60	Pseudomonas_phage	1.4e-61	55.6
AZC29219.1\|1369092_1369617_+	hypothetical protein	NA	NA	NA	NA
AZC29220.1\|1369620_1370229_+\|plate	Baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	1.3e-48	61.0
AZC29221.1\|1370242_1370575_+\|plate	Baseplate assembly protein W	A0A2H4JI46	uncultured_Caudovirales_phage	2.1e-37	69.1
AZC29222.1\|1370571_1371567_+\|plate	Phage-related baseplate assembly protein	A0A2H4JC04	uncultured_Caudovirales_phage	8.0e-109	63.2
AZC29223.1\|1371563_1372298_+	Tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	9.0e-41	52.0
AZC29224.1\|1372294_1372831_+\|tail	Phage tail fiber	A2I2X8	Vibrio_virus	5.9e-50	62.1
AZC29225.1\|1372934_1373687_+	hypothetical protein	NA	NA	NA	NA
AZC29226.1\|1373698_1373935_+	hypothetical protein	M4NK32	Synechococcus_phage	9.7e-05	40.0
AZC29227.1\|1374022_1374244_+	hypothetical protein	NA	NA	NA	NA
AZC29228.1\|1374246_1375413_+\|tail	Major tail sheath protein	B0ZSG8	Halomonas_phage	1.1e-125	57.5
AZC29229.1\|1375412_1375919_+	hypothetical protein	Q6R4W3	Vibrio_virus	2.6e-23	35.7
AZC29230.1\|1376045_1376657_+	hypothetical protein	B0ZSH0	Halomonas_phage	1.5e-25	36.4
AZC29231.1\|1376653_1376779_+	hypothetical protein	NA	NA	NA	NA
AZC29232.1\|1376785_1378993_+\|tail	Phage tail length tape-measure protein	A0A2H4JAA5	uncultured_Caudovirales_phage	7.2e-09	49.3
AZC29233.1\|1378992_1379376_+\|tail	Unclassified tail protein	A0A2H4JAC8	uncultured_Caudovirales_phage	4.0e-40	59.8
AZC29234.1\|1379368_1379581_+\|tail	P2-like prophage tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	6.9e-18	61.4
AZC29235.1\|1379590_1380607_+\|tail	Phage tail protein D	A0A2H4JH05	uncultured_Caudovirales_phage	4.5e-107	56.9
AZC29236.1\|1380748_1381333_+	hypothetical protein	B5TK65	Pseudomonas_phage	2.6e-75	72.0
AZC29237.1\|1381329_1381512_+	Mu-like prophage FluMu protein GP38	B5TK66	Pseudomonas_phage	4.2e-24	90.0
AZC29238.1\|1381511_1383008_+\|tail	Bacteriophage tail sheath protein	B5TK67	Pseudomonas_phage	3.5e-257	91.0
AZC29239.1\|1383074_1383422_+\|tail	Phage tail tube protein	B5TK68	Pseudomonas_phage	2.9e-58	93.9
AZC29240.1\|1383418_1383715_+\|tail	Phage small tail protein E	B5TK69	Pseudomonas_phage	2.3e-43	94.9
AZC29241.1\|1383845_1385798_+\|tail	Phage tail length tape-measure protein	B5TK70	Pseudomonas_phage	9.8e-42	50.5
AZC29242.1\|1385784_1387023_+\|tail	Phage tail/DNA circulation protein	B5TK71	Pseudomonas_phage	7.5e-181	75.5
AZC29243.1\|1387026_1388067_+\|tail	Prophage tail protein	B5TK72	Pseudomonas_phage	4.5e-163	83.2
AZC29244.1\|1388131_1388641_+\|plate	Prophage baseplate assembly protein V	B5TK73	Pseudomonas_phage	5.8e-79	89.3
AZC29245.1\|1388640_1389039_+	Bacteriophage protein GP46	B5TK74	Pseudomonas_phage	3.7e-65	89.4
AZC29246.1\|1389028_1390069_+	Phage FluMu protein gp47	B5TK75	Pseudomonas_phage	3.6e-168	87.9
AZC29247.1\|1390056_1390656_+\|tail	Prophage tail protein	B5TK76	Pseudomonas_phage	1.1e-105	92.5
AZC29248.1\|1390667_1391522_+\|tail	Prophage tail fiber protein	B5TK77	Pseudomonas_phage	1.5e-23	76.4
AZC29249.1\|1391526_1392168_+\|tail	putative tail fiber assembly-like protein	B5TK78	Pseudomonas_phage	1.6e-38	59.2
AZC29250.1\|1392548_1394099_+\|tail	Prophage tail fiber protein	A4PE45	Ralstonia_virus	2.3e-38	54.8
AZC29251.1\|1394100_1394571_+	hypothetical protein	A0A2H4EXG4	Aeromonas_phage	4.2e-07	35.0
AZC29252.1\|1394965_1396048_+\|tail	Prophage tail fiber protein	B5TK79	Pseudomonas_phage	1.3e-112	58.4
AZC29253.1\|1396055_1396658_+	Tail fiber assembly protein	B5TK80	Pseudomonas_phage	6.9e-47	49.2
AZC29254.1\|1396679_1397243_+	Lytic enzyme	B5TK83	Pseudomonas_phage	3.4e-88	83.9
AZC29255.1\|1397224_1397761_+	hypothetical protein	B5TK84	Pseudomonas_phage	1.5e-61	70.8
AZC29256.1\|1397843_1398344_+	Nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	4.7e-73	86.7
AZC29257.1\|1398427_1399480_+	RecA protein	A0A0S2MVG1	Bacillus_phage	4.4e-113	63.0
AZC29258.1\|1399488_1399956_+	Regulatory protein RecX	NA	NA	NA	NA
AZC29259.1\|1400001_1401117_-	Decarboxylase family protein	NA	NA	NA	NA
AZC29260.1\|1401600_1401795_+	hypothetical protein	NA	NA	NA	NA
AZC29261.1\|1401796_1402219_-	Putative NADPH-quinone reductase (modulator of drug activity B)	NA	NA	NA	NA
AZC29262.1\|1402408_1403119_+	putative conserved protein YfiP, contains DTW domain	NA	NA	NA	NA
AZC29263.1\|1403453_1404104_+	Transcriptional regulator, LuxR family	NA	NA	NA	NA
AZC29264.1\|1404180_1404543_+	Diacylglycerol kinase	NA	NA	NA	NA
AZC29265.1\|1404539_1405466_-	LysR family transcriptional regulator	NA	NA	NA	NA
AZC29266.1\|1405601_1406381_+	Ferredoxin--NADP(+) reductase	NA	NA	NA	NA
AZC29267.1\|1406453_1407149_-	S-adenosylmethionine-dependent methyltransferase YaeB	NA	NA	NA	NA
AZC29268.1\|1407235_1408006_-	Rhamnolipid biosynthesis 3-oxoacyl-ACP reductase RhlG	NA	NA	NA	NA
AZC29269.1\|1408139_1408601_-	Uncharacterized protein YehS	Q9EYF4	Enterobacteria_phage	8.5e-37	51.3
AZC29270.1\|1408667_1409378_-	Ribosomal large subunit pseudouridine synthase F	NA	NA	NA	NA
AZC29271.1\|1409460_1409934_-	Acetyltransferase	NA	NA	NA	NA
AZC29272.1\|1410040_1411378_-	Ribosomal protein S12p Asp88 methylthiotransferase	NA	NA	NA	NA
AZC29273.1\|1411478_1411748_-	hypothetical protein	NA	NA	NA	NA
AZC29274.1\|1411769_1413611_+	Kup system potassium uptake protein	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	6.1e-78	35.0
AZC29275.1\|1413712_1413988_-	hypothetical protein	NA	NA	NA	NA
AZC29276.1\|1414488_1415784_-	Alanylphosphatidylglycerol hydrolase, periplasmic	NA	NA	NA	NA
AZC29277.1\|1415783_1418432_-	Alanylphosphatidylglycerol synthase	NA	NA	NA	NA
AZC29278.1\|1419371_1420436_+	DNA polymerase IV	NA	NA	NA	NA
AZC29279.1\|1420495_1421449_-	putative lipoprotein	NA	NA	NA	NA
AZC29280.1\|1421466_1423182_-\|tRNA	Prolyl-tRNA synthetase, bacterial type	NA	NA	NA	NA

DBSCAN-SWA_2

2271448 : 2286180

Pseudomonas_phage(50.0%)

integrase

attL 2268021:2268035|attR 2278167:2278181

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2268021:2268035	attL	NA	NA	NA	NA
AZC30071.1\|2271448_2271751_+	Integration host factor alpha subunit	A0A0H3UZA0	Geobacillus_virus	1.8e-11	38.9
AZC30072.1\|2271731_2272088_+	Transcriptional regulator, MerR family	NA	NA	NA	NA
AZC30073.1\|2272338_2273490_-\|integrase	Phage integrase family protein	A0A059VF45	Pseudomonas_phage	6.7e-200	89.3
AZC30074.1\|2274093_2274471_-	hypothetical protein	A0A291AUQ6	Sinorhizobium_phage	3.3e-31	48.8
AZC30075.1\|2274532_2274718_-	hypothetical protein	NA	NA	NA	NA
AZC30076.1\|2274714_2275077_-	hypothetical protein	B5WZW9	Pseudomonas_phage	4.8e-11	38.9
AZC30077.1\|2275365_2276520_+	hypothetical protein	NA	NA	NA	NA
AZC30078.1\|2276826_2277060_+	hypothetical protein	A0A1B0VP27	Pseudomonas_phage	2.0e-31	83.1
AZC30079.1\|2277051_2277243_-	hypothetical protein	A0A2H4JE08	uncultured_Caudovirales_phage	1.8e-25	92.1
AZC30080.1\|2277696_2278734_-	Retron-type RNA-directed DNA polymerase	A0A0N7AE80	Bacillus_phage	5.0e-45	35.9
2278167:2278181	attR	NA	NA	NA	NA
AZC30081.1\|2279108_2279462_-	hypothetical protein	NA	NA	NA	NA
AZC30082.1\|2279517_2280099_-	hypothetical protein	NA	NA	NA	NA
AZC30083.1\|2280219_2280696_-	Phage protein	NA	NA	NA	NA
AZC30084.1\|2280754_2281066_-	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	1.1e-43	86.4
AZC30085.1\|2281135_2281606_-	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	5.7e-73	86.8
AZC30086.1\|2281602_2281845_-	hypothetical protein	A0A2H4J1H1	uncultured_Caudovirales_phage	2.0e-21	67.5
AZC30087.1\|2281841_2282486_-	Phage related protein	G9FH00	Rhodococcus_phage	6.3e-06	24.4
AZC30088.1\|2282482_2283292_-	Phage related protein	A0A1B0VMB2	Pseudomonas_phage	3.6e-91	86.0
AZC30089.1\|2283299_2284235_-	TolA protein	A0A1B0VN89	Pseudomonas_phage	1.3e-12	37.2
AZC30090.1\|2284226_2284460_+	hypothetical protein	NA	NA	NA	NA
AZC30091.1\|2284566_2284701_-	hypothetical protein	NA	NA	NA	NA
AZC30092.1\|2284697_2284892_-	hypothetical protein	NA	NA	NA	NA
AZC30093.1\|2284888_2285080_-	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	1.4e-09	50.0
AZC30094.1\|2285076_2285514_-	hypothetical protein	NA	NA	NA	NA
AZC30095.1\|2285536_2285968_-	hypothetical protein	W6MVG2	Pseudomonas_phage	2.7e-53	67.1
AZC30096.1\|2285988_2286180_-	hypothetical protein	A0A1B0VN94	Pseudomonas_phage	2.3e-28	88.9

DBSCAN-SWA_3

2290944 : 2324089

Pseudomonas_phage(78.95%)

terminase,tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZC30100.1\|2290944_2291601_-	Putative cI prophage repressor protein	K7PM82	Enterobacteria_phage	3.9e-43	50.5
AZC30101.1\|2291710_2291890_+	hypothetical protein	R9TPV3	Vibrio_phage	1.1e-05	49.0
AZC30102.1\|2291972_2292395_+	hypothetical protein	A0A2D1GNM7	Pseudomonas_phage	6.8e-33	50.7
AZC30103.1\|2292396_2293371_+	Primosomal protein I	A0A1B0VME0	Pseudomonas_phage	4.5e-112	69.2
AZC30104.1\|2293372_2294152_+	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	1.2e-56	48.5
AZC30105.1\|2294151_2294664_+	hypothetical protein	H2BDI1	Pseudomonas_virus	9.5e-13	33.3
AZC30106.1\|2294660_2295032_+	hypothetical protein	NA	NA	NA	NA
AZC30107.1\|2295028_2295499_+	hypothetical protein	A0A2H4J106	uncultured_Caudovirales_phage	1.2e-51	60.3
AZC30108.1\|2295495_2296095_+	Phage NinG rap recombination	A0A059VA66	Pseudomonas_phage	3.3e-49	55.2
AZC30109.1\|2296091_2296787_+	Phage protein	A0A1B0YZZ3	Pseudomonas_phage	5.1e-62	56.3
AZC30110.1\|2296961_2297198_+	hypothetical protein	NA	NA	NA	NA
AZC30111.1\|2297667_2298321_+	hypothetical protein	A0A2H4J517	uncultured_Caudovirales_phage	4.9e-06	38.9
AZC30112.1\|2298353_2298728_+\|holin	Phage holin	A0A0S2SYH4	Pseudomonas_phage	1.8e-37	66.1
AZC30113.1\|2298720_2299005_+\|holin	Phage holin	Q9MC42	Pseudomonas_phage	8.6e-24	61.3
AZC30114.1\|2299008_2299305_+	hypothetical protein	V5K3F8	Pseudomonas_phage	3.0e-11	35.0
AZC30115.1\|2299351_2299606_-	hypothetical protein	NA	NA	NA	NA
AZC30116.1\|2299678_2300293_+	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	1.9e-100	84.5
AZC30117.1\|2300324_2300801_+	Phage protein	A0A1B0VMH2	Pseudomonas_phage	4.9e-72	83.5
AZC30118.1\|2300775_2302095_+\|terminase	Phage terminase	A0A0S2SYF1	Pseudomonas_phage	4.9e-247	92.7
AZC30119.1\|2302097_2303474_+	structural protein	A0A0H5AWC7	Pseudomonas_phage	2.9e-189	70.3
AZC30120.1\|2303473_2304547_+	NAD+--asparagine ADP-ribosyltransferase	A0A0H5BBX3	Pseudomonas_phage	2.7e-102	54.3
AZC30121.1\|2304697_2305444_+	hypothetical protein	A0A0H5AWD1	Pseudomonas_phage	4.2e-102	79.7
AZC30122.1\|2305453_2306422_+	putative phage protein	A0A0H5ARK0	Pseudomonas_phage	2.7e-141	79.5
AZC30123.1\|2306463_2306739_+	hypothetical protein	A0A0H5BBX8	Pseudomonas_phage	6.6e-05	57.8
AZC30124.1\|2306745_2307114_+	hypothetical protein	A0A0H5AUF0	Pseudomonas_phage	1.6e-25	67.2
AZC30125.1\|2307115_2307499_+	hypothetical protein	A0A059VA70	Pseudomonas_phage	5.8e-31	52.8
AZC30126.1\|2307582_2307879_+	hypothetical protein	A0A059VF88	Pseudomonas_phage	1.7e-27	60.4
AZC30127.1\|2307875_2308271_+	hypothetical protein	A0A059VK45	Pseudomonas_phage	1.6e-55	77.9
AZC30128.1\|2308267_2308834_-	hypothetical protein	NA	NA	NA	NA
AZC30129.1\|2308948_2310112_+	hypothetical protein	A0A059VG08	Pseudomonas_phage	5.6e-154	89.4
AZC30130.1\|2310192_2310678_+	hypothetical protein	A0A059VF34	Pseudomonas_phage	1.6e-38	50.3
AZC30131.1\|2310776_2310920_+	hypothetical protein	A0A059VJS3	Pseudomonas_phage	5.1e-09	57.4
AZC30132.1\|2311170_2311419_+	hypothetical protein	NA	NA	NA	NA
AZC30133.1\|2311428_2311728_+	hypothetical protein	NA	NA	NA	NA
AZC30134.1\|2311783_2314690_+\|tail	Phage tail length tape-measure protein 1	A0A2H4J7J3	uncultured_Caudovirales_phage	4.6e-213	53.4
AZC30135.1\|2314708_2315293_+	hypothetical protein	A0A059VJR9	Pseudomonas_phage	2.1e-85	81.4
AZC30136.1\|2315292_2315895_+	hypothetical protein	A0A059VA31	Pseudomonas_phage	1.7e-101	89.5
AZC30137.1\|2315897_2316296_+	hypothetical protein	A0A059VK01	Pseudomonas_phage	1.3e-65	84.1
AZC30138.1\|2316292_2319226_+\|tail	Phage tail fiber protein	A0A059VFW9	Pseudomonas_phage	0.0e+00	70.8
AZC30139.1\|2319222_2319546_+	hypothetical protein	NA	NA	NA	NA
AZC30140.1\|2319545_2320226_+	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	1.2e-44	41.3
AZC30141.1\|2320288_2321056_+	hypothetical protein	A0A1S5R1J5	Pseudomonas_phage	9.5e-33	52.7
AZC30142.1\|2321057_2321402_+	hypothetical protein	NA	NA	NA	NA
AZC30143.1\|2321459_2321885_+	Cell wall hydrolase	A0A1B0VMI2	Pseudomonas_phage	4.7e-66	82.3
AZC30144.1\|2321884_2322409_+	hypothetical protein	A0A2H4IZW4	uncultured_Caudovirales_phage	1.2e-50	64.0
AZC30145.1\|2322426_2323026_-	hypothetical protein	NA	NA	NA	NA
AZC30146.1\|2323381_2324089_-	Gifsy-2 prophage protein	A0A2H4J991	uncultured_Caudovirales_phage	2.8e-95	72.7

DBSCAN-SWA_4

3833343 : 3867150

uncultured_Caudovirales_phage(62.96%)

terminase,plate,integrase,tail,protease

attL 3832611:3832629|attR 3877897:3877915

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3832611:3832629	attL	NA	NA	NA	NA
AZC31520.1\|3833343_3834138_-	Dam modification methylase	C7BGE1	Burkholderia_phage	3.4e-102	66.2
AZC31521.1\|3834902_3835127_-	hypothetical protein	NA	NA	NA	NA
AZC31522.1\|3835397_3835949_-	Phage endolysin	A0A2H4JHX4	uncultured_Caudovirales_phage	4.2e-67	68.7
AZC31523.1\|3835972_3837025_-\|tail	Phage tail protein D	A0A2H4JBF6	uncultured_Caudovirales_phage	1.5e-145	74.6
AZC31524.1\|3837082_3837289_-\|tail	Phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.7e-19	67.2
AZC31525.1\|3837263_3838109_-	Phage protein U	A0A2H4J875	uncultured_Caudovirales_phage	3.9e-88	58.6
AZC31526.1\|3838118_3840662_-	Phage protein	A0A2H4JG00	uncultured_Caudovirales_phage	3.8e-78	37.9
AZC31527.1\|3840793_3841090_-	hypothetical protein	A0A2H4J873	uncultured_Caudovirales_phage	1.8e-19	56.4
AZC31528.1\|3841117_3841627_-\|tail	Phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	6.9e-64	70.7
AZC31529.1\|3841639_3842806_-\|tail	Phage tail sheath monomer	A0A2H4J869	uncultured_Caudovirales_phage	1.7e-182	81.5
AZC31530.1\|3843333_3844893_-\|tail	Phage tail fiber protein	A0A077K818	Ralstonia_phage	5.2e-70	40.8
AZC31531.1\|3844885_3845494_-\|tail	Phage tail fiber	A0A2H4JDH5	uncultured_Caudovirales_phage	5.3e-79	71.7
AZC31532.1\|3845495_3846377_-\|plate	Baseplate assembly protein J	A0A2H4JFK9	uncultured_Caudovirales_phage	1.3e-107	68.3
AZC31533.1\|3846373_3846700_-\|plate	Phage baseplate assembly protein	A0A2H4JA09	uncultured_Caudovirales_phage	6.2e-34	65.1
AZC31534.1\|3846702_3846915_-	hypothetical protein	NA	NA	NA	NA
AZC31535.1\|3846958_3847540_-\|plate	Baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	6.0e-56	59.0
AZC31536.1\|3847536_3848070_-	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	1.7e-36	47.7
AZC31537.1\|3848062_3848725_-	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	1.8e-72	61.0
AZC31538.1\|3848721_3849042_-	hypothetical protein	NA	NA	NA	NA
AZC31539.1\|3849044_3849218_-	hypothetical protein	NA	NA	NA	NA
AZC31540.1\|3849219_3850251_-	hypothetical protein	A0A0C5ABI0	Bacteriophage	1.2e-70	41.9
AZC31541.1\|3850262_3850613_-	hypothetical protein	NA	NA	NA	NA
AZC31542.1\|3850624_3851845_-\|protease	Periplasmic serine protease (ClpP class)	A0A219YB02	Aeromonas_phage	1.4e-49	43.0
AZC31543.1\|3851847_3853455_-	hypothetical protein	A0A067ZJA4	Vibrio_phage	5.3e-94	42.0
AZC31544.1\|3853457_3853673_-	hypothetical protein	NA	NA	NA	NA
AZC31545.1\|3853685_3855611_-\|terminase	Phage terminase, large subunit	A0A2D1GMT1	Marinobacter_phage	3.6e-166	48.9
AZC31546.1\|3855615_3856137_-\|terminase	Phage DNA packaging protein, Nu1 subunit of terminase	A0A2D1GMW4	Marinobacter_phage	9.6e-21	40.5
AZC31547.1\|3856273_3856621_-	Holin	A0A2H4J893	uncultured_Caudovirales_phage	2.7e-43	79.1
AZC31548.1\|3857148_3857511_-	hypothetical protein	NA	NA	NA	NA
AZC31549.1\|3857503_3859720_-	DNA primase, phage associated	A0A2D1GN57	Marinobacter_phage	1.2e-189	47.0
AZC31550.1\|3859929_3860448_-	hypothetical protein	NA	NA	NA	NA
AZC31551.1\|3861034_3861847_+	repressor protein c2	A5VW98	Enterobacteria_phage	2.7e-30	39.4
AZC31552.1\|3861870_3863259_-	Putative phage protein	R9TRQ8	Vibrio_phage	3.0e-37	31.6
AZC31553.1\|3863628_3864219_+	hypothetical protein	NA	NA	NA	NA
AZC31554.1\|3864229_3864514_+	DNA-binding protein Roi-related protein	NA	NA	NA	NA
AZC31555.1\|3864672_3864990_+	transcriptional regulator, putative	NA	NA	NA	NA
AZC31556.1\|3865043_3865451_+	hypothetical protein	NA	NA	NA	NA
AZC31557.1\|3865447_3865846_+	C-5 cytosine-specific DNA methylase	NA	NA	NA	NA
AZC31558.1\|3865845_3866082_+	Phage protein	A0A2H4JF29	uncultured_Caudovirales_phage	4.5e-26	72.7
AZC31559.1\|3866223_3867150_+\|integrase	Phage-related integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	1.3e-97	60.2
3877897:3877915	attR	NA	NA	NA	NA

DBSCAN-SWA_5

4483365 : 4489625

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZC32040.1\|4483365_4483758_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	9.6e-58	83.1
AZC32041.1\|4483761_4484124_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.9e-44	75.0
AZC32042.1\|4484123_4484423_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	4.8e-33	70.7
AZC32043.1\|4484419_4484755_+\|tRNA	tRNA 2-thiouridine synthesis protein TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	1.9e-46	82.0
AZC32044.1\|4484751_4485753_+	Anthranilate phosphoribosyltransferase like	A0A2H4JBY5	uncultured_Caudovirales_phage	5.5e-166	84.8
AZC32045.1\|4485842_4486850_+	Glutathione S-transferase, omega	NA	NA	NA	NA
AZC32046.1\|4486949_4488344_-	Precorrin-2 oxidase	NA	NA	NA	NA
AZC32047.1\|4488344_4489625_-\|tRNA	Seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.7e-101	54.8

DBSCAN-SWA_6

5147595 : 5155074

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZC32616.1\|5147595_5148861_-	UDP-N-acetyl-D-mannosamine dehydrogenase	M1HZW8	Acanthocystis_turfacea_Chlorella_virus	2.5e-22	25.7
AZC32617.1\|5148911_5150054_-	UDP-N-acetylglucosamine 2-epimerase	A0A1V0SAG5	Catovirus	1.8e-24	27.6
AZC32618.1\|5151406_5152309_-	Glucose-1-phosphate thymidylyltransferase	A0A291LA53	Escherichia_phage	1.1e-109	67.9
AZC32619.1\|5152305_5153199_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-27	33.0
AZC32620.1\|5153195_5154272_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.2e-99	53.3
AZC32621.1\|5154519_5154759_-	hypothetical protein	NA	NA	NA	NA
AZC32622.1\|5154783_5155074_-	Integration host factor beta subunit	A3E2K9	Sodalis_phage	1.5e-10	41.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027707

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection