CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027705	Pseudomonas sp. CMR5c chromosome, complete genome	2 crisprs	cas3-cas2,cas8f,cas5f,cas7f,cas6f,DinG,csa3,cas3,PD-DExK,WYL,DEDDh	2	8	6	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027705_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027705_1

410795-410897

Orphan

Consensus_repeat	Method
GGCCTGCCTGTACCAGGGTCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027705_1

>merge|CP027705|1|410795-410897|CRISPRCasFinder
GGCCTGCCTGTACCAGGGTCCCCAAAACTCTGGCCTGCTCGCTTGGCGCGGGCGGACCGGGTGTTAAAGAGGGGAGTCCTGGCCTGCCTGTACCAAGGTCCCC

>CP027705|1|1|410795-410897|CRISPRCasFinder
GGCCTGCCTGTACCAGGGTCCCC	AAAACTCTGGCCTGCTCGCTTGGCGCGGGCGGACCGGGTGTTAAAGAGGGGAGTCCT
GGCCTGCCTGTACCAAGGTCCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP027705.1\|AZC15804.1\|405347_406634_-\|Murein-hydrolase-activator-EnvC	unknown	unknown	gnl\|CDD\|227278
CP027705.1\|AZC15815.1\|415187_415637_-\|DNA-directed-RNA-polymerase,-beta-subunit	unknown	unknown	unknown
CP027705.1\|AZC15809.1\|409802_410258_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223297
CP027705.1\|AZC15819.1\|419736_421560_+\|GTP-binding-protein-TypA/BipA	unknown	unknown	gnl\|CDD\|224138
CP027705.1\|AZC15810.1\|410256_410697_+\|hypothetical-protein	unknown	unknown	unknown
CP027705.1\|AZC15818.1\|418142_419597_+\|tRNA-4-thiouridine-synthase	unknown	unknown	gnl\|CDD\|234932
CP027705.1\|AZC15807.1\|408862_409117_+\|Glutaredoxin-3-(Grx3)	unknown	unknown	gnl\|CDD\|274017
CP027705.1\|AZC15805.1\|406769_408299_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
CP027705.1\|AZC15806.1\|408449_408863_+\|Rhodanese-related-sulfurtransferase-YibN	unknown	unknown	gnl\|CDD\|238089
CP027705.1\|AZC15808.1\|409156_409636_+\|Protein-export-protein-SecB-(maintains-pre-export-unfolded-state)	unknown	unknown	gnl\|CDD\|180234
CP027705.1\|AZC15812.1\|412640_413726_-\|Nitrogen-regulation-protein-NtrB	unknown	unknown	gnl\|CDD\|226370
CP027705.1\|AZC15817.1\|416403_417810_-\|Glutamine-synthetase-type-I	unknown	unknown	gnl\|CDD\|181884
CP027705.1\|AZC15820.1\|421709_422150_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|308985
CP027705.1\|AZC15814.1\|414085_415219_+\|Methylphosphotriester-DNA--protein-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|225080
CP027705.1\|AZC15811.1\|411207_412644_-\|Nitrogen-regulation-protein-NtrC	unknown	unknown	gnl\|CDD\|273818
CP027705.1\|AZC15813.1\|413791_413965_-\|hypothetical-protein	unknown	unknown	unknown
CP027705.1\|AZC15802.1\|403097_404009_-\|Putative-periplasmic-protein-YibQ	unknown	unknown	gnl\|CDD\|377404
CP027705.1\|AZC15801.1\|402264_403020_+\|ABC-type-amino-acid-transport/signal-transduction-system,-periplasmic-component/domain	unknown	unknown	gnl\|CDD\|223904
CP027705.1\|AZC15816.1\|415697_416252_-\|Periplasmic-chorismate-mutase-I-precursor	unknown	unknown	gnl\|CDD\|236441
CP027705.1\|AZC15803.1\|404005_405316_-\|Carboxyl-terminal-protease	unknown	unknown	gnl\|CDD\|223864

Protein	Function_ID	Function_description	E-value
CP027705.1\|AZC15804.1\|405347_406634_-\|Murein-hydrolase-activator-EnvC	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	3.51857e-99
CP027705.1\|AZC15816.1\|415697_416252_-\|Periplasmic-chorismate-mutase-I-precursor	gnl\|CDD\|236441	PRK09269, PRK09269, chorismate mutase; Provisional.	1.70146e-62
CP027705.1\|AZC15809.1\|409802_410258_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	2.06273e-88
CP027705.1\|AZC15819.1\|419736_421560_+\|GTP-binding-protein-TypA/BipA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
CP027705.1\|AZC15818.1\|418142_419597_+\|tRNA-4-thiouridine-synthase	gnl\|CDD\|234932	PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional.	0
CP027705.1\|AZC15812.1\|412640_413726_-\|Nitrogen-regulation-protein-NtrB	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	1.56213e-166
CP027705.1\|AZC15805.1\|406769_408299_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
CP027705.1\|AZC15806.1\|408449_408863_+\|Rhodanese-related-sulfurtransferase-YibN	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.28368e-25
CP027705.1\|AZC15808.1\|409156_409636_+\|Protein-export-protein-SecB-(maintains-pre-export-unfolded-state)	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	1.38137e-81
CP027705.1\|AZC15817.1\|416403_417810_-\|Glutamine-synthetase-type-I	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
CP027705.1\|AZC15807.1\|408862_409117_+\|Glutaredoxin-3-(Grx3)	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	5.26106e-49
CP027705.1\|AZC15814.1\|414085_415219_+\|Methylphosphotriester-DNA--protein-cysteine-S-methyltransferase	gnl\|CDD\|225080	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism].	3.64747e-78
CP027705.1\|AZC15811.1\|411207_412644_-\|Nitrogen-regulation-protein-NtrC	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
CP027705.1\|AZC15802.1\|403097_404009_-\|Putative-periplasmic-protein-YibQ	gnl\|CDD\|377404	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).	4.65636e-93
CP027705.1\|AZC15801.1\|402264_403020_+\|ABC-type-amino-acid-transport/signal-transduction-system,-periplasmic-component/domain	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	3.98762e-23
CP027705.1\|AZC15820.1\|421709_422150_-\|hypothetical-protein	gnl\|CDD\|308985	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain. This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.	1.3142e-07
CP027705.1\|AZC15803.1\|404005_405316_-\|Carboxyl-terminal-protease	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.17306e-143

>CP027705.1|AZC15810.1|410256_410697_+|hypothetical-protein
MHGSEEKDRQHSTPEEDPRPKLMLRVFGSLAIVGLMVGLMIGRLTQTEPVQLLKVEGVAEGLVVWFDREPKVHGEHIEGAVALLFDATGQAQQGQLQVNQRTANWRIRLADQGLLLNLVAARPLRGEWSASEVDGRWRLEVRLREQ
>CP027705.1|AZC15809.1|409802_410258_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRHPDLASCLQSLGHPRLFAFTTKGSRPFHDASFQEGDAFLFGPESRGLPAEVLDALPGEQRLRLPMREGCRSLNLSNTVAVAVYEGWRQLGFK
>CP027705.1|AZC15808.1|409156_409636_+|Protein-export-protein-SecB-(maintains-pre-export-unfolded-state)
MTDQQNTAAAEDESAPQFSLQRIYVRDLSFEAPKSPAIFRQQWEPSVSLDLNTRQKALETDFHEVVLTLSVTVKNGDEVAFIAEVQQAGIFLIKNLDEASMSHTLGAFCPNILFPYAREALDSLVTRGSFPALMLAPVNFDALYAQELQRIQAGENTVQ
>CP027705.1|AZC15807.1|408862_409117_+|Glutaredoxin-3-(Grx3)
MSQVIVYSSDYCPYCSRAKHLLASKGVAFEEIKVDGKPQVRAEMTQKAGRTSVPQIWIGATHVGGCDDLFALERAGKLDALLAA
>CP027705.1|AZC15806.1|408449_408863_+|Rhodanese-related-sulfurtransferase-YibN
MVAHLIQFATEHYLLVGAFVILLALLIAHELSRGGRSLSTGELTALVNSEQGVVIDIRPSKEYAAGHIVGALNIPQDKLTARIGELEKHKAKTIILVDAQGQHAGTHARELMKSGFTAAKLSGGVASWKADNLPLVK
>CP027705.1|AZC15805.1|406769_408299_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MTTTPKPLVLMILDGFGHSESHESNAVYAANKPVLDRLCASVPNGLISGSGMDVGLPDGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFENPTICAAVDKAVAAGKAVHILGLLSDGGVHSHQDHLVAMAELAFKRGAEKIYLHAFLDGRDTPPKSAQSSIELLDETFKTLGKGRIASLIGRYFAMDRDNRWDRVAQAYNLIVEGQGQFSAASAQEGLQAAYARDESDEFVKATTIGEPVKVEDGDAVVFMNFRADRARELSRVFVEDDFQEFERARQPKLAGFVMLTQYAASIPAPAAFAPSSLENVLGDYLAKNGKTQLRIAETEKYAHVTFFFSGGREEPFPGEERILIPSPKVATYDLQPEMSAPEVTDKIVDAIEHQRYDVIIVNYANGDMVGHSGVFDAAVKAVECLDLCVGRIVDALEKVGGEALITADHGNVEQMSDETTGQAHTAHTTEPVPFIYVGKRPLKVREGGVLADVAPTMLKLLGLPQPAEMTGKSILV
>CP027705.1|AZC15804.1|405347_406634_-|Murein-hydrolase-activator-EnvC
MLRALIALALTCLLQPAFADERAQTQQQLDATRQDIAELKKLLGKLQEEKSGVQKELRGTETEMGKLEKQVEALQKELKKSESELQRLDEEKKKLQSARTEQQRLIAIQARAAYQNGRQEYLKLLLNQQNPEKFARTLTYYDYLSQARLEQLKNFNETLRQLANVEKEISLQQAQLLVQKSSLDTQREELAKVRKERQLALAKLNDDVKARDQKLQQREQDQADLGKVLKTIEETLARQAREAEEARQKALIAQQEAEKKRLREAQADTSDAPRKPVHSTPGALVSSGGPSYGGAFASARGKLPWPVDGRLLARFGETRGDDARSKWDGVMISAAAGSQVHAVHGGRVVFADWLRGAGLLVILDHGNGYLSLYGHNQTLLKEAGDVVKAGESISTVGNSGGQDTPALYFAIRQQGRPSDPAQWCHAQG
>CP027705.1|AZC15803.1|404005_405316_-|Carboxyl-terminal-protease
MLHLSRLTSLALTIALVIGAPLAFAAETAQATSAATTKAPLPLEELRTFAEVMDRIKAAYVEPVDDKTLLENAIKGMLSNLDPHSSYLGPEDFAELQESTSGEFGGLGIEVGAEDGFIKVVSPIDDTPASKAGIQAGDLIVKINGQPTRGQTMTEAVDKMRGKIGQKITLTLVRDGGTPFDVTLARATIQVKSVKSQLLESGYGYIRITQFQVKTGEEVSKALAKLRKDNGKKLNGIILDLRNNPGGVLQAAVEVVDHFITKGLIVYTKGRIANSELRFSATGKDESEAVPMVVLINGGSASASEIVAGALQDQKRAVLMGTTSFGKGSVQTVLPLNNDRALKITTALYFTPNGRSIQAQGIVPDIEVRRAKITSESQDGEYFKEADLQGHLGNGNGGADKPSGSSGKAKPMPQDDDYQLAQALSLLKGLSITRGK
>CP027705.1|AZC15802.1|403097_404009_-|Putative-periplasmic-protein-YibQ
MIEPSPAGRLPSREPASRRSVRQGVPLPRPLLIPMLHFPSTHSRQPLSRLFGGLLLALLCCLPAQAATPQAPKAYLSLIIDDLGQNLPRDRRVLGLPGPVTTAIMPDTPHAAEFAREAHRAGKIVILHMPMDPATGPFAWHPELPQEELQKRLEAAFQAVPYTSGINNHMGSRMTSQRPAMAWLMGELQRRNKFFVDSRTSAQTVAAAEAQKIGLASVSRDVFLDDERTEPAIAQQLQTAIKLAHKQGSAVMIGHPYPQTLAVLERELPKLKAQGIEWIDIKSMISLRSNQAMSGHGKNGKYR
>CP027705.1|AZC15801.1|402264_403020_+|ABC-type-amino-acid-transport/signal-transduction-system,-periplasmic-component/domain
MLKRLLVVVASAGFLLGGLARAAEPADTSLVLLTENFPPYNMAINGKNFAQGENINGIAVDIVREMCKRAGINYSLTLRFPWERIYKMALEQPGYGVFVTARLPDREPLFKWVGPIGPDDWIMLAKAGSKITLESLEQARKYKIGAYKGDAIAETLAKQGLAPQVVLRDQDNARKLVAGQIDLWATGDPAGRYLAKQEGITGLKTVLRFNSAELYLALNKDVSDEVVAKLQAALDEMRKEGLVEEIMGRYL
>CP027705.1|AZC15811.1|411207_412644_-|Nitrogen-regulation-protein-NtrC
MSRSETVWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQTPDVIISDIRMPGASGLDLLARIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVKRANQHAQEQQGLEVAPSLARTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALHRHSPRASSPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLDEIGDMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLETLVHAGKFREDLFHRLNVIRIHIPRLSDRREDIPTLARHFLGRAAQELAVEPKLLKHETEEYLKNLPWPGNVRQLENTCRWITVMASGREVHIGDLPPELLSLPQDSAPVTNWEQALRQWADQALARGQSNLLDSAVPSFERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKELGMKVDGGDEEDSDEA
>CP027705.1|AZC15812.1|412640_413726_-|Nitrogen-regulation-protein-NtrB
MTISDPLHRLLLDNLTTATILLNADLRLEYMNPAAEMLLAISGQRSHGQFISELFTESAEALSSLRQAVEQAHPFTKREAMLTALTGQTLTVDYAVTPILSNGDTLLLLEVHPRDRLLRITKEEAQLSKQETSKMLVRGLAHEIKNPLGGIRGAAQLLARQLPEEGLRDYTNVIIEEADRLRNLVDRMLGSNKLPVLAPTNIHEVLERVCSLVEAESQGCITLVRDYDPSIPDVLVDREQMIQAVLNIVRNAMQAISTQNELRLGRITLRSRTMRQFTIGHVRHRLVTKIEIIDNGPGIPAELQDTLFFPMVSGRPDGTGLGLAITQNIISQHQGLIECDSHPGHTTFSIFLPLEQGAPST
>CP027705.1|AZC15813.1|413791_413965_-|hypothetical-protein
MHYIGAQPCTHGSSTTHFGSKTFARAGSPLGKRRSNACFRGSDASFRSLGLVFAFSP
>CP027705.1|AZC15814.1|414085_415219_+|Methylphosphotriester-DNA--protein-cysteine-S-methyltransferase
MDHAPLLFRLPDDDTLYQALLDRDPAYEGFAYVGVKSTGVFCRLTCAARKPKRHNTVFFGSIKGCVEAGFRPCLRCRPLAEAGVQEPWVKVLLEQLHADAERRWYEDDLVRLGLDPSTVRRAFKRYFGVTFLEMARLRRMGRGMQQLASGEPVIEAQISAGFDSDSGFRKAFGRLVGQPPSNLRGRELLKVDWLQTPIGVMLAVADAQVLHLLEFFDRPALAGELRKLQDSSGSSIGFGRFAPIDQIEAELRRYFAGEPVSFQTPLAMQASAFTRTVWQALRAIPLGSTCSYAGLARDIGSPTAVRAVARANGANQIAIVIACHRVIGADGSLTGYGGGLWRKRWLLEHERRMHLAGREQPVQAQESFSGGRAAGRN
>CP027705.1|AZC15815.1|415187_415637_-|DNA-directed-RNA-polymerase,-beta-subunit
MRIAALWLLWITLLPADAALYHPTAGHCTGSDRGSSDWPSSNRAPAACQTSQRQAYRRLQLNGVQEQGALRANNGSFSVQVDLHPPLQPSHRLRLLLDGEPHGAPGRGPQLHLSNLDRGLHRLAVQVLEGEQVLQQSAEISFFLLRAHR
>CP027705.1|AZC15816.1|415697_416252_-|Periplasmic-chorismate-mutase-I-precursor
MKSSLSLFLALACALSASLARADDSPASLAPLLGSIAERLTLAEQVALSKWDSHKAVEDRPREQQVIAAATAQAASHGLDEAMVEQFFAAQIEANKLVQYARLSAWNLQGRAPDTPRQDLAGQIRPQLDQLQKRLLQQLASFAPQRSDPHCPQWLARANQASAGEPLRQLAMIRATAELCVFKG
>CP027705.1|AZC15817.1|416403_417810_-|Glutamine-synthetase-type-I
MSKSVQLIKDHDVKWIDLRFTDTKGTQHHVTMPARDALDEDFFEAGKMFDGSSIAGWKGIEASDMILMPDDETAVLDPFTEEPTLILVCDIIEPSSMQGYDRDPRAIAKRAEEHLKATGIGDTVFAGPEPEFFIFDQVKFKSDISGSMFKIYSEQGSWMSDQDVEGGNKGHRPGIKGGYFPVPPFDHDHEIRTSMCNALEEMGLTVEVHHHEVATAGQNEIGVKFNTLVKKADETQTLKYVVHNVADAYGRTATFMPKPLYGDNGSGMHVHMSIWKDGKNTFAGEGYAGLSDTALYFIGGIIKHGKALNGFTNPATNSYKRLVPGFEAPVMLAYSARNRSASIRIPYVSSPKARRIEARFPDPAANPYLCFAALLMAGLDGIQNKIHPGDAADKNLYDLPPEEAKEIPQVCGSLKEALEELDKGRAFLTKGGVFSDDFIDAYIALKSEEEIKVRTFVHPLEYELYYSC
>CP027705.1|AZC15818.1|418142_419597_+|tRNA-4-thiouridine-synthase
MKLIVKVFPEITIKSRPVRTRFIRQLAKNIRAVLRDLDPAVVVNGVWDNLELETAVSEPKALKEMTERLRCMPGIAHFLQVDEYPLGDFDDIVAKCKQHFGHALEGKIFAVRCKRAGKHEFSSMDVEKYVGSQLRRQCGAAGISLKEPQIEVRMEIRDQRLFVIHSQHNGIGGYPLGALEQTLVLMSGGFDSTVAAYQIMRRGLMGHFCFFNLGGRAHELGVMEVAHYIWKKYGSSQRVLFVSVPFEEVLGEILGKVDDSHMGVILKRMMLRAASSIAERLHIDALVTGEAISQVSSQTLPNLSVIDCVTDKLVLRPLIASHKQDIIDLANQIGTADFARHMPEYCGVISVNPKTNAKRHRVEHEEKEFDMAVLERAIERAKLVPIDRVIDELGQDLKVEEVDEALAGQIVIDIRHPDAQEDDPLELPGIEVQALPFYAVNARFKELDPNRQYLLYCDKGVMSRLHAHHLLSEGHANVRVYRPS
>CP027705.1|AZC15819.1|419736_421560_+|GTP-binding-protein-TypA/BipA
MIENLRNIAIIAHVDHGKTTLVDKLLRQSGTLERNELNDERVMDSNDQEKERGITILAKNTAINWNGYHINIVDTPGHADFGGEVERVMSMVDSVLLLVDAQDGPMPQTRFVTKKAFEAGLRPIVVINKVDRPGARPDWVLDQIFDLFDNLGATEEQLDFKVVYASALNGIAGLDHTDMAEDMTPLYQSIVDNVPAPSVDRDGPFQMQISALDYNSFLGVIGVGRIARGRVKPNTPVVAIDTEGKKRNGRILKLMGHHGLHRVDVEEAAAGDIVCISGFEELFISDTLCDMNNVEAMKPLTVDEPTVSMTFQVNDSPFCGKEGKFVTSRNIKERLDKELLYNVALRVEEGDSADKFKVSGRGELHLSVLIETMRREGFEMAVGRPEVIIREVNGTKQEPFENVTIDIPEESQGKVMEEMGLRKADLTNMAPDGKGRVRLEYNIPARGLIGFRNQFLTLTNGAGILTSIFDRYDTMKSGHMSGRLNGVLVSVETGKALTYSLETLQARGKLFVEHGQEIYNGQIIGLNSRDNDLGVNPTKGKKLDNMRASGKDETIALVPPVRHTLEQALEFIQDDELCEVTPKSIRLRKKILDEGERTRAAKKAKSN
>CP027705.1|AZC15820.1|421709_422150_-|hypothetical-protein
MNSNLIAAAEIDRLDTWAKYSAPMCGSCMSSCCTLPVEVKIKDLIRIGIVDEFERGEPAKNIAKRLQKEGIVERYNQKSEIFTLQRMSNNDCLYLDRKSRLCTIYDKRPDTCRNHPKIGPRPGYCAYKPKPLERPSNTSRRTLERF

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Crispr_ID: CP027705_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027705_2

978850-979897

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGTATAGGCAGCTAAGAAA	PILER-CR
GTTCACTGCCGTATAGGCAGCTAAGAAA	CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTAAGAAA	CRT

17 spacers

cas6f,cas7f,cas5f,cas8f,cas3-cas2

The CRISPR arrays of CP027705_2

>merge|CP027705|2|978850-979897|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTATAGGCAGCTAAGAAAGCCCCATTCGCACCATCCCCACCGCTGTTATCGTTCACTGCCGTATAGGCAGCTAAGAAATTCATCTAGAGCCTGCTCCCAGGTGATGGCTTGTTCACTGCCGTATAGGCAGCTAAGAAATGAAACAGTCGGCTAGCAGCGCCAGGACATAGGTTCACTGCCGTATAGGCAGCTAAGAAAAATTCCTTCAGGAATTCAAGATTCTCTCCATCGTTCACTGCCGTATAGGCAGCTAAGAAAGTGGGCCCGCGGTTGTTTTAGTTCATTTCCTGGTTCACTGCCGTATAGGCAGCTAAGAAACAGTTCGTGATCGACGCTGCATTGATCATCTGGTTCACTGCCGTATAGGCAGCTAAGAAAAGAGAACGGTATTCGCGCCCTGGGCAAGCTTTGTTCACTGCCGTATAGGCAGCTAAGAAAGTTACACAAACTGCCTCTGAAGGCTGCACTCCGTTCACTGCCGTATAGGCAGCTAAGAAAAGCAGATTCAGCTCGAGTACTCCCACCAGGAAGTTCACTGCCGTATAGGCAGCTAAGAAATGGAGAAATCCGCCGGCGAGCCGGTGACAGAGGTTCACTGCCGTATAGGCAGCTAAGAAAAAACGGCGCCGGTCATGCGGAACACCAGGCGCGTTCACTGCCGTATAGGCAGCTAAGAAAGAAGCGATGTATGCCGAGCTTACGCGCCTGATGTTCACTGCCGTATAGGCAGCTAAGAAAAGCGACACCTTGGCCTTGGCCAGAGGGAAGCGGTTCACTGCCGTATAGGCAGCTAAGAAATCAGAAACGAAAACCCCTGCATTTGCAGGGATGTTCACTGCCGTATAGGCAGCTAAGAAATTGCCGGCAGCACGCAGGGCCAGGATGCCGCGGTTCACTGCCCTATAGGCGGCTAAGAAAATAAAATTTCTACAGGTCCGCAATCCGGTGTAGTTCACTGCCGTATAAGCAGCTAAGAAAAGGAGTACTTGCTGCTTTGGAGGTTTGGCCATGTTCACTGCCGCACAGGCAGCTAAGAAA

>CP027705|2|1|978850-979657|PILER-CR
GTTCACTGCCGTATAGGCAGCTAAGAAA	GCCCCATTCGCACCATCCCCACCGCTGTTATC
GTTCACTGCCGTATAGGCAGCTAAGAAA	TTCATCTAGAGCCTGCTCCCAGGTGATGGCTT
GTTCACTGCCGTATAGGCAGCTAAGAAA	TGAAACAGTCGGCTAGCAGCGCCAGGACATAG
GTTCACTGCCGTATAGGCAGCTAAGAAA	AATTCCTTCAGGAATTCAAGATTCTCTCCATC
GTTCACTGCCGTATAGGCAGCTAAGAAA	GTGGGCCCGCGGTTGTTTTAGTTCATTTCCTG
GTTCACTGCCGTATAGGCAGCTAAGAAA	CAGTTCGTGATCGACGCTGCATTGATCATCTG
GTTCACTGCCGTATAGGCAGCTAAGAAA	AGAGAACGGTATTCGCGCCCTGGGCAAGCTTT
GTTCACTGCCGTATAGGCAGCTAAGAAA	GTTACACAAACTGCCTCTGAAGGCTGCACTCC
GTTCACTGCCGTATAGGCAGCTAAGAAA	AGCAGATTCAGCTCGAGTACTCCCACCAGGAA
GTTCACTGCCGTATAGGCAGCTAAGAAA	TGGAGAAATCCGCCGGCGAGCCGGTGACAGAG
GTTCACTGCCGTATAGGCAGCTAAGAAA	AAACGGCGCCGGTCATGCGGAACACCAGGCGC
GTTCACTGCCGTATAGGCAGCTAAGAAA	GAAGCGATGTATGCCGAGCTTACGCGCCTGAT
GTTCACTGCCGTATAGGCAGCTAAGAAA	AGCGACACCTTGGCCTTGGCCAGAGGGAAGCG
GTTCACTGCCGTATAGGCAGCTAAGAAA

>CP027705|2|2|978850-979897|CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTAAGAAA	GCCCCATTCGCACCATCCCCACCGCTGTTATC
GTTCACTGCCGTATAGGCAGCTAAGAAA	TTCATCTAGAGCCTGCTCCCAGGTGATGGCTT
GTTCACTGCCGTATAGGCAGCTAAGAAA	TGAAACAGTCGGCTAGCAGCGCCAGGACATAG
GTTCACTGCCGTATAGGCAGCTAAGAAA	AATTCCTTCAGGAATTCAAGATTCTCTCCATC
GTTCACTGCCGTATAGGCAGCTAAGAAA	GTGGGCCCGCGGTTGTTTTAGTTCATTTCCTG
GTTCACTGCCGTATAGGCAGCTAAGAAA	CAGTTCGTGATCGACGCTGCATTGATCATCTG
GTTCACTGCCGTATAGGCAGCTAAGAAA	AGAGAACGGTATTCGCGCCCTGGGCAAGCTTT
GTTCACTGCCGTATAGGCAGCTAAGAAA	GTTACACAAACTGCCTCTGAAGGCTGCACTCC
GTTCACTGCCGTATAGGCAGCTAAGAAA	AGCAGATTCAGCTCGAGTACTCCCACCAGGAA
GTTCACTGCCGTATAGGCAGCTAAGAAA	TGGAGAAATCCGCCGGCGAGCCGGTGACAGAG
GTTCACTGCCGTATAGGCAGCTAAGAAA	AAACGGCGCCGGTCATGCGGAACACCAGGCGC
GTTCACTGCCGTATAGGCAGCTAAGAAA	GAAGCGATGTATGCCGAGCTTACGCGCCTGAT
GTTCACTGCCGTATAGGCAGCTAAGAAA	AGCGACACCTTGGCCTTGGCCAGAGGGAAGCG
GTTCACTGCCGTATAGGCAGCTAAGAAA	TCAGAAACGAAAACCCCTGCATTTGCAGGGAT
GTTCACTGCCGTATAGGCAGCTAAGAAA	TTGCCGGCAGCACGCAGGGCCAGGATGCCGCG
GTTCACTGCCCTATAGGCGGCTAAGAAA	ATAAAATTTCTACAGGTCCGCAATCCGGTGTA
GTTCACTGCCGTATAAGCAGCTAAGAAA	AGGAGTACTTGCTGCTTTGGAGGTTTGGCCAT
GTTCACTGCCGCACAGGCAGCTAAGAAA

>CP027705|2|1|978850-979897|CRT
GTTCACTGCCGTATAGGCAGCTAAGAAA	GCCCCATTCGCACCATCCCCACCGCTGTTATC
GTTCACTGCCGTATAGGCAGCTAAGAAA	TTCATCTAGAGCCTGCTCCCAGGTGATGGCTT
GTTCACTGCCGTATAGGCAGCTAAGAAA	TGAAACAGTCGGCTAGCAGCGCCAGGACATAG
GTTCACTGCCGTATAGGCAGCTAAGAAA	AATTCCTTCAGGAATTCAAGATTCTCTCCATC
GTTCACTGCCGTATAGGCAGCTAAGAAA	GTGGGCCCGCGGTTGTTTTAGTTCATTTCCTG
GTTCACTGCCGTATAGGCAGCTAAGAAA	CAGTTCGTGATCGACGCTGCATTGATCATCTG
GTTCACTGCCGTATAGGCAGCTAAGAAA	AGAGAACGGTATTCGCGCCCTGGGCAAGCTTT
GTTCACTGCCGTATAGGCAGCTAAGAAA	GTTACACAAACTGCCTCTGAAGGCTGCACTCC
GTTCACTGCCGTATAGGCAGCTAAGAAA	AGCAGATTCAGCTCGAGTACTCCCACCAGGAA
GTTCACTGCCGTATAGGCAGCTAAGAAA	TGGAGAAATCCGCCGGCGAGCCGGTGACAGAG
GTTCACTGCCGTATAGGCAGCTAAGAAA	AAACGGCGCCGGTCATGCGGAACACCAGGCGC
GTTCACTGCCGTATAGGCAGCTAAGAAA	GAAGCGATGTATGCCGAGCTTACGCGCCTGAT
GTTCACTGCCGTATAGGCAGCTAAGAAA	AGCGACACCTTGGCCTTGGCCAGAGGGAAGCG
GTTCACTGCCGTATAGGCAGCTAAGAAA	TCAGAAACGAAAACCCCTGCATTTGCAGGGAT
GTTCACTGCCGTATAGGCAGCTAAGAAA	TTGCCGGCAGCACGCAGGGCCAGGATGCCGCG
GTTCACTGCCCTATAGGCGGCTAAGAAA	ATAAAATTTCTACAGGTCCGCAATCCGGTGTA
GTTCACTGCCGTATAAGCAGCTAAGAAA	AGGAGTACTTGCTGCTTTGGAGGTTTGGCCAT
GTTCACTGCCGCACAGGCAGCTAAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP027705.1\|AZC16302.1\|971498_974651_+\|CRISPR-associated-helicase-Cas3,-Yersinia-type	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|274201
CP027705.1\|AZC16305.1\|977129_978152_+\|CRISPR-associated-protein,-Csy3-family	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
CP027705.1\|AZC16303.1\|974782_976135_+\|CRISPR-associated-protein,-Csy1-family	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|378220
CP027705.1\|AZC16315.1\|990370_991528_-\|Glycine-betaine/L-proline-transport-ATP-binding-protein-ProV	unknown	unknown	gnl\|CDD\|224050
CP027705.1\|AZC16316.1\|991524_992193_-\|L-proline-glycine-betaine-ABC-transport-system-permease-protein-ProW	unknown	unknown	gnl\|CDD\|224095
CP027705.1\|AZC16301.1\|970781_971159_+\|hypothetical-protein	unknown	unknown	unknown
CP027705.1\|AZC16312.1\|986950_987631_+\|PKHD-type-hydroxylase-YbiX	unknown	unknown	gnl\|CDD\|235483
CP027705.1\|AZC16304.1\|976127_977111_+\|CRISPR-associated-protein,-Csy2-family	cas5f	cd09736_cas5f_CAS-I-F	gnl\|CDD\|378221
CP027705.1\|AZC16317.1\|992205_993099_-\|Glycine-betaine-binding-protein	unknown	unknown	gnl\|CDD\|270329
CP027705.1\|AZC16310.1\|981781_984313_-\|putative-iron-regulated-membrane-protein	unknown	unknown	gnl\|CDD\|223446
CP027705.1\|AZC16309.1\|980127_981669_+\|Phosphodiesterase/alkaline-phosphatase-D	unknown	unknown	gnl\|CDD\|226070
CP027705.1\|AZC16300.1\|969913_970177_+\|hypothetical-protein	unknown	unknown	unknown
CP027705.1\|AZC16306.1\|978155_978719_+\|CRISPR-associated-protein,-Csy4-family	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
CP027705.1\|AZC16313.1\|987634_988534_+\|Tetratricopeptide-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
CP027705.1\|AZC16299.1\|969593_969899_+\|pyocin-protein	unknown	unknown	unknown
CP027705.1\|AZC16308.1\|979905_980070_-\|hypothetical-protein	unknown	unknown	unknown
CP027705.1\|AZC16298.1\|969107_969233_+\|hypothetical-protein	unknown	unknown	unknown
CP027705.1\|AZC16314.1\|988627_989791_-\|Ornithine-decarboxylase,-eukaryotic	unknown	unknown	gnl\|CDD\|143482
CP027705.1\|AZC16297.1\|968703_969081_+\|hypothetical-protein	unknown	unknown	unknown
CP027705.1\|AZC16311.1\|984465_986742_-\|Ferrichrome-iron-receptor	unknown	unknown	gnl\|CDD\|227115

Protein	Function_ID	Function_description	E-value
CP027705.1\|AZC16302.1\|971498_974651_+\|CRISPR-associated-helicase-Cas3,-Yersinia-type	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
CP027705.1\|AZC16305.1\|977129_978152_+\|CRISPR-associated-protein,-Csy3-family	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
CP027705.1\|AZC16303.1\|974782_976135_+\|CRISPR-associated-protein,-Csy1-family	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	1.15433e-153
CP027705.1\|AZC16316.1\|991524_992193_-\|L-proline-glycine-betaine-ABC-transport-system-permease-protein-ProW	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	2.66839e-71
CP027705.1\|AZC16304.1\|976127_977111_+\|CRISPR-associated-protein,-Csy2-family	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	2.14952e-139
CP027705.1\|AZC16317.1\|992205_993099_-\|Glycine-betaine-binding-protein	gnl\|CDD\|270329	cd13611, PBP2_YehZ, Substrate-binding domain YehZ of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein YehZ of Clostridium sticklandii is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. YehZ belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	9.65107e-131
CP027705.1\|AZC16309.1\|980127_981669_+\|Phosphodiesterase/alkaline-phosphatase-D	gnl\|CDD\|226070	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism].	0
CP027705.1\|AZC16315.1\|990370_991528_-\|Glycine-betaine/L-proline-transport-ATP-binding-protein-ProV	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	7.6424e-157
CP027705.1\|AZC16306.1\|978155_978719_+\|CRISPR-associated-protein,-Csy4-family	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	2.33641e-81
CP027705.1\|AZC16313.1\|987634_988534_+\|Tetratricopeptide-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	3.91671e-28
CP027705.1\|AZC16310.1\|981781_984313_-\|putative-iron-regulated-membrane-protein	gnl\|CDD\|223446	COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism].	5.59661e-128
CP027705.1\|AZC16312.1\|986950_987631_+\|PKHD-type-hydroxylase-YbiX	gnl\|CDD\|235483	PRK05467, PRK05467, Fe(II)-dependent oxygenase superfamily protein; Provisional.	3.70293e-156
CP027705.1\|AZC16314.1\|988627_989791_-\|Ornithine-decarboxylase,-eukaryotic	gnl\|CDD\|143482	cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this subfamily are proteins with homology to ODC but do not possess any catalytic activity, the Antizyme inhibitor (AZI) and ODC-paralogue (ODC-p). AZI binds to the regulatory protein Antizyme with a higher affinity than ODC and prevents ODC degradation. ODC-p is a novel ODC-like protein, present only in mammals, that is specifically exressed in the brain and testes. ODC-p may function as a tissue-specific antizyme inhibitory protein.	1.30758e-170
CP027705.1\|AZC16311.1\|984465_986742_-\|Ferrichrome-iron-receptor	gnl\|CDD\|227115	COG4774, Fiu, Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism].	0

>CP027705.1|AZC16306.1|978155_978719_+|CRISPR-associated-protein,-Csy4-family
MDHYLDLKLLPDPEFPEPQLMSALLNKFHRALHDLRRNDIGISFPDTRRPIRHLGSHLRIHGNRQALGHLLAIDWLAGMRDHVEIGQPCSVPTPVQHRHVSRVQVDSSPARLRRRLIKRHGLTEDQARQRLPDSAAKRCDLPFAVMRSHTSHQLFNLFIRHGPLLEQPQPGTFNGYGLSSSATVPWF
>CP027705.1|AZC16305.1|977129_978152_+|CRISPR-associated-protein,-Csy3-family
MSNDALKTASVLAFERKLDPSDALFHAGDWQSRSQWEPVVVREKSVRGTISNRLKAKELDPAKLDAAIEHPNLQTVDVATLPHDADTLRVSFTLRVLAGTGQPSACNDFAYRQKLLETVQGYVQANGFGELARRYAHNLANGRFLWRNRIGAEQVEVEVEHLVEGQAATQWRFDSLSLSLRQFDAAGEHGEALQSLAGLIARGLAGEQHVLLRITAYARMGAGQEVFPSQELILDRGRGDKSKTLYSVGNIAGIHSQKVGNALRSIDTWYQGADSNGPIAVEPYGSVTTQGKAYRQPRGSQDDFYTLLDSWVLKDRVPALDQQHFVIATLIRGGVFGEAG
>CP027705.1|AZC16304.1|976127_977111_+|CRISPR-associated-protein,-Csy2-family
MAECPHFEHLLVIPHLQVQNANSLSSPLTHGFPSITAFLGLMWALERKTVDTGLDLQFNAVGVVVHDHEEQVTAGNFVNTLRLTRNPLNRDGSTAAIVEEGRVHLRISLVFAVQSQALDDQRSTVARQVRELLLQMRIAGGSLIPSRAPQGQQQPYSIPMTGDEEARDVLFYQAKLRLLPGFTLVERQDLLEQRHRDLQARQPGASVLDAWLSLARINWSSVAPAADGEASGPVQWRNDRTDLGWLVPIPVGYGALTALQAPGTVARARDSQTAFRFVENLYGIGQWISPHRLQSPQQLLWYADSRSDQGLYRCRNDYRAPSLAHLD
>CP027705.1|AZC16303.1|974782_976135_+|CRISPR-associated-protein,-Csy1-family
MNQGTNPAIRSRLFRHTINAFIQERRDAKLKGAEASDALSAAKYEYATWLADAARRVGQVQAVTHVLKATHPDARGSSLHVAPQTLPRHREVGSHMLGSDYAQDIVGNAAALDVYKFLKLEVEQRRLLDWLLEDDADLLAALSPDPALAQSWAEAFKGLVRPHQTLSSHAMAKQVFWCVSGEPGDDAGFELLQPMFPSSLVHAVHADINDARFGERNQAARQARRERQAHDGIYRDYPQLVIRKLGGTKPQNISQLNSERGGVNYLLASLPPKWRQQHPGNLLHLESVFSRLRRFEDMGELIEALCLLLQADPARSLRTRAQRERIERALGRALAAFGLSLRASLPPGWSRDRHCQLPLCEQLWLDPQRAQLASADDHQDADQAFAAAFAQRRWPDEIAQRFGHWLNAILLQRGLPVGDTEQAHWARQAVVDAEISCATREVVEQEVRHG
>CP027705.1|AZC16302.1|971498_974651_+|CRISPR-associated-helicase-Cas3,-Yersinia-type
MEDINSATLETTLHCKRARTPGLSRRAANKGWHTAQDISLLAQLAALLHDLGKASRAFQQKLRRCSLEHNLYRHEWVSLRLFLAFVGTDDDPAWLRRLASPSAEDDHAWLSAGRFQRDGLDATTPPFKQLAPLAAAVAWLVVSHHRLPTLPSWNEAGDGEQSWLGKKSARFNPAMLDNLIEGITHEWNECSRSAPLNEVEAFWQFEHGLPVVYPQWRAQAAKLAQRLLVLQAKPGHGNWLDNPYVMHLARMSLMLGDHHYSSLPPESSQRVRGDDQGLVFANTHSDGQLKQPLDEHLLGVARMTRSIVHGLPDFERHLPRLARHAGLCKRSGSGRFAWQDQAVDAATGLRSQSQRQGAFIVNMASTGCGKTLANARIMHALADPLAGMRCTFALGLRSLTLQTGNSYRQLLNLGDDDLAIRVGGCASRALFEHYQARAEASGSASAQALIEEDSHVRYEGSLAAHGLLSKVVNQPQITALLNTPMLVCTIDHLMPATEAQRAGRQIAPMLRLLSSDLVLDELDDFDLADLPALTRLVYWAGLLGTRVLLSSATLPAALVQGMFQAYGAGRRHYRRNRGELDTPDEIPCLWVDEFTAQPFSCHDAETFSQQHRTFVDQRVQALGRIEPRRRGELVALSIGVLPVADIRRAFAEQVRATMLQAHARHAEVCPHSGKRVSFGLVRMANIEPLFDVALALFALGAPAGQRIHLCVYHSRFPLLLRSAIEAQLDTCLDRRQPGAVYDQPQIRQLLDQYPEEEHLFVVLGSPVTEVGRDHDYDWAVVEPSSMRSLIQLAGRVQRHRQQPCQHTNIFIFDSNLRHFEQPGAAAFIRPGFEHDSRQADHPMRLASHRLGQLLDPADYQELSARPRIQPRANQAWRPRHNLVDLEQARLSAQMLPKDRSRAGQPAPRGVKPVAFDLDAACAWQYPRAALTWALPQQQPFRENTIREAELLWLPDDDEERLVLHRIHEQPGAAELYLPAQRLLENIDLQGVSAPGISPWGQHDLLSLLNEQAAIQGLPLRTCAERFTTVKLSASPQGWRFHPVLGFAARA
>CP027705.1|AZC16301.1|970781_971159_+|hypothetical-protein
MKKLVPDPPVFSSVSRRNPEHDRANEVIFHALVNTRTGSLIRTLKPTVAAAVGRDSLFDVRSGISAEEALVHVSMLLKAAEEVSDEITEQASGVERGLIWSLVHSVEMARGVVDALLDGHRLSSD
>CP027705.1|AZC16300.1|969913_970177_+|hypothetical-protein
MIDLENIFKKESVEDVILHFAPRIPYPRIDRIYVKYNFEVIASGELLRTYQRLLKEGKLLENKKPLPEKGPNWKEPVFVTEKRYGLE
>CP027705.1|AZC16299.1|969593_969899_+|pyocin-protein
MDKVKLHTSRFGESPENKVMIERLEMILKGELQITDIDKRFYTHEIRELERYRNLGVKDGMLPENITEVWSSTHTATLEDYKVNEGTQTLYTPEAEEAYFK
>CP027705.1|AZC16298.1|969107_969233_+|hypothetical-protein
MLPLGRFLAPVPVFNFINGMLWRTRNLRAKILEHGAVGSWP
>CP027705.1|AZC16297.1|968703_969081_+|hypothetical-protein
MKKLIPDPPVFSSVSRRNPEHDRANEVILHALVNTRTGSLIRTLKPTVAAPVGRDSLFDVRSGISAEEALVHVSMLLKAAEEVSDEITEQASGVERGLIWSLVHSVEMARGVVDALLDGHRLSSD
>CP027705.1|AZC16308.1|979905_980070_-|hypothetical-protein
MTKTRPARESQASQRLVHQVSQAASTAVTGADGLMMDCVLPACSAIEMNSTDGR
>CP027705.1|AZC16309.1|980127_981669_+|Phosphodiesterase/alkaline-phosphatase-D
MSEFNLGRRRIMQIAGAGMLLPSLAPAVIASVKDRPKLTDGVQSGDLQGDRAIIWSRSDRPARMVVEWDTRSMFTNPRRLVSPLADARTDFTARVDLSGLPVNQAIFYRVTFEDARTGVASEPWFGHLRSAPSQRRDIRFVWSGDTVGQGFGINPDIGGMRIYEAMRLRLPDFFIHSGDTIYADGPVPAQLTTEGGRIWRNITTEAKSKVAETLDEYRGNYRYNLLDENLRRFNAEVPQIWQWDDHEVVNNWSPSKQLDERYMVKDIQTLVGRARQAWLEYAPMRRQSADGGGRIYRKLSYGPLLDVFVLDMRSYRGPNDDNLGGEKPFLGREQLDWLKRELKDSQAQWKVVAADMPIGLGVPDGEVSPGVARWEAIANGDPGQAQGRELEIAELLAYLRKHRVRNHVWLTADVHYCAAHHYHPDRAAFQDFEPFWEFVAGPLNAGSFGPNVLDKTFGPEVVFQKAPPTQNASPFAGFQFFGEVQIDGQTTEMSVILRDLDGVAVFERKLQPA
>CP027705.1|AZC16310.1|981781_984313_-|putative-iron-regulated-membrane-protein
MLKKTLFQLHWFFGISAGLVLALMGITGATVSFEDEILRALNPSVLQVDKLPAGTLPPAELVAKLQAAEGKDVSMLWVETDSGNAARVFYTPPPGERRGQMRYFDPYTGQFTGEAVGQGFFGFMLQLHRFLAMGDSGRQITGACTLILIFFCLSGLYLRWPRQVASWRAWLTLDWAKKGRAFNWDLHAVFGTWCLLFYLLFALTGLYWSYEWYSKGLTRLLSDSPHSERARGGRGGPPAKGPAPVADYNAMWSSIYSAAGKDLSAYNVRMPPVAGQPATVFYLLKDSPHERALNQITLDPATGVISRHERYADKSFKAQLLTSVYALHVGSYFGLVGRIVLTLASLCMPLFFITGWLLYLDRRRKKRQIRDARKGLEQATDDTNGWLIGFASQSGFAEQLAWQTAGQLQAAGIGARVRPLASLDEQDLRSAQRALFVVSTFGDGEAPDSARGFERKLLGRELALDGLEYAVLGLGDRQYPQFCGFARRLHTWLSSQGASSLFTPVEVDNGDSYALRHWQQQLGQLTGHAPVDLWQAPAFANWTLSQRHLLNPESSGSGVYLLQLQPPGTSSWLAGDLVEVMPRNCPWLVDHFLEGLGLSGESPVQLDGLEESLEQALGSRQLPENRAHLVGLHAQALVDALVPLTQREYSIASIAADGCLELLVRQERHADGSLGIGSGWLTEHVQVGASISLRVRRNSGFHLPAEPCPLILLGNGTGLAGLRSLLKARIAEGQQRNWLLFGERNAEHDFYCKDELQEWLARGDLSRLDLAFSRDQEHKIYVQDRLREAAATLQQWLDDGAALYICGSLQGMASGVDQVLNELLGAEQVERLIEQGRYRRDVY
>CP027705.1|AZC16311.1|984465_986742_-|Ferrichrome-iron-receptor
MTRQQPLSAVSSPRLLASAIGVAITAGSAAHMVQAAEDTGKKASGAIALEATSITGEAQDATSYQVEKASSQKYTAPLVDTPRSVTVIPQQVLKDTAATSLQDALRTVPGITFGAGEGGNPQGDRPFIRGFDAQSDTFLDGVRDTGGQSREIFDIESVEVSKGPNSSFGGRGSAGGSLNLVSKLPKQQDFLNGGFTYGSDQTRRYTLDVNRQFLEGAAFRLNLMSHEQNVAGRDSINYDRWGVAPSLTFGLGSPTRVNLSYYHMESDDLPDSGIPYGYSSNGAKAPHVHDKPTDGGDSNNFYGLKHRDFRKTRADISTISIEHDLNDNMTLKNTLRHGNTGQDYILTQPDDSQHNVNQFGTVWRRANSRVSTTETTTNQTDLFGEFHALGFKHNYSTGLEFTGEETRVSSYTVSPNSNPTCTPGKASGGSCTSLGNPNPNDDWTGSIARNYYGTNTKATSRAAYAFDTIELDPQWLLNLGVRYDTFDTEANTNAASGRTKLKSDSQFWNWQAGLVWKPADNGSIYASYATSANPAGGVLDGAADNPLSAGLATSDLKPEETVNYELGTKWDVLNNRLSLTAAVFRTEKKNTRILVDSLTYQNAGESRVDGIELGASGKITDKWQVFAGYSYLKSELVDAGLNGRNGVVSAGSNKGNQMPNTPKNSFSLWTTYDVTSKFTVGGGAFYVDDVYGDPANTVYVPSYTRYDAMASYKLTKNVDLQLNVQNLTDKTYYDKAYAAHFANQAPGRTALMSANFHF
>CP027705.1|AZC16312.1|986950_987631_+|PKHD-type-hydroxylase-YbiX
MLLHIPGVFTRDEVGRIRQALEQADWADGKITAGYQSAKAKHNLQLPEGHPLAREIGEAMLERLWQNPLFMSAALPHKVFPPLFNCYTAGGSFDFHIDNAVRQPKGSAERVRTDLSSTLFFSDPEDYDGGELEIQDTYGVQRVKLPAGDLVLYPGTSLHKVNPVTRGARYASFFWTQSLVREDSQRALLFEMDGAIQELTRDMPEHPSLIRLTGTYHNLLRRWVEV
>CP027705.1|AZC16313.1|987634_988534_+|Tetratricopeptide-repeat-family-protein
MAFRLRREESLDGGQLSAMLEESPGRAAQAILLAAGEGLVDAQALLGQILLDGRGIEQDQALALRWFGIAAQRGHLMARNMLGRCHEHGWGCPADPGVAAEHYRQAAAAGLDWGLYNYANLLATGRGVEQNHAQALACYQRAAQLGHAKSMNLLGRYLEEGLVCPADPQAARDWYRRSAEGGDFRGQFSHGAILADAGRIDEALDWLQRALAGGNLNFLRVARDALLEARHPQVRALALAYHQRAAQLGDERDAARLAELAATLDLLPSEGLAEVDADRVVEHQVVQAWAEDLSKDAKV
>CP027705.1|AZC16314.1|988627_989791_-|Ornithine-decarboxylase,-eukaryotic
MSINVEDYFARETFQKMKAFADQKETPFVMIDTQMIAQAYDDLRAGFEFAKVYYAVKANPAVEIIDLLHEKGSSFDIASIYELDKVLGRGVNPANISYGNTIKKSKDIRYFYEKGVRLYATDSEADLRNIAKAAPGSKVYVRILTEGSTTADWPLSRKFGCQTDMAMDLLILARDLGLVPYGVSFHVGSQQRDISVWDAAIAKVKVIFERLKEEDGIELKLINMGGGFPANYITRTNSLETYAEEIIRFLKEDFGDDLPEIILEPGRSLIANAGILVSEVVLVARKSRTAVERWVYTDVGKFSGLIETMDESIKFPIWTEKKGEVEEVVIAGPTCDSADIMYENYKYGLPLNLAIGDRLYWLSTGAYTTSYSAVEFNGFPPLKAYYV
>CP027705.1|AZC16315.1|990370_991528_-|Glycine-betaine/L-proline-transport-ATP-binding-protein-ProV
MIELQNLSKTFRSNGKDVKAVDSVSLTVNEGEICVFLGPSGCGKSTTLKMINRLIMPTSGKVLINGEDTTGLDEVTLRRNIGYVIQQIGLFPNMTIEENITVVPRLLGWDKQKCHDRARELMSMIKLEPKHYLHRYPRELSGGQQQRIGVIRALAAEAPLLLMDEPFGAVDPINREMIQNEFFEMQRALNKTVIMVSHDIDEAIKLGDKIAIFRAGKLLQIDHPDTLLAHPADDFVSNFVGQDSTLKRLLLVKAEDAADNAPSVSPDTPVAEALELMDEHDRRYVVVTCAENKALGYVRRRDLHRQGGTCGQFLRQFNATAAYDEHLRILLSRMYEFNRSWLPVLDAERVFLGEVTQESIAAYLSSGRSRGMKTNIVSPAEAVSA
>CP027705.1|AZC16316.1|991524_992193_-|L-proline-glycine-betaine-ABC-transport-system-permease-protein-ProW
MEFLNAFSHLDWAQVLHLTWQHITLVGIAVTLAIVFGVPLGVLMTRFPSLAGPLQASATVLLTIPSIALFGLLLPFYSKFGQGLGPLPAITAVFLYSLLPIMRNTYLALTGVEPGIREAARGIGMTFGQRLRMVELPIAVPVILAGVRTAVVMNIGVMTIAATIGAGGLGVLILASISRSDMSMLIVGAVLVSLLAIFADLLLQWLQRSLTPKGLSPIGALK
>CP027705.1|AZC16317.1|992205_993099_-|Glycine-betaine-binding-protein
MKKLSLILGCILLFSALAHAAEKPLIRIGARVFTEQTLLAEITSQYLRSKGYDTRVTGGLGSNLARSAQESGQLDLIWEYTGVSLVAYNHIDEKLDKQQSYARVKELDAKKGLVWLSPSKFSNTYALALPENVAKEHPRINSISDLTRALDENTRENRLVALDTEFANRSDGMAGMVKLYDMALTRKNTRQMDAGLVYTALRNGQVFAGLVYTTDGRLSAFKLKLLEDDKHYFPDYTAAPVVRQAYLDAHPQLAAELEPLAALFDDETMRQLNARVDVDHESPSAVAADFLRQHPIN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP027705_2	2.11\|979478\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979478-979509	32	CP027705.1	4458796-4458827	0	1.0
CP027705_2	2.10\|979418\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979418-979449	32	CP027705.1	4498662-4498693	1	0.969

1. spacer 2.11|979478|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to position: 4458796-4458827, mismatch: 0, identity: 1.0

aaacggcgccggtcatgcggaacaccaggcgc	CRISPR spacer
aaacggcgccggtcatgcggaacaccaggcgc	Protospacer
********************************

2. spacer 2.10|979418|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to position: 4498662-4498693, mismatch: 1, identity: 0.969

tggagaaatccgccggcgagccggtgacagag	CRISPR spacer
tggagaaatccgccggcgaaccggtgacagag	Protospacer
*******************.************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP027705_2	2.7\|979238\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979238-979269	32	MF417883	Uncultured Caudovirales phage clone 7F_11, partial genome	8825-8856	5	0.844
CP027705_2	2.7\|979238\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979238-979269	32	MF417872	Uncultured phage clone 7AX_2, partial genome	40477-40508	5	0.844
CP027705_2	2.7\|979238\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979238-979269	32	MF417962	Uncultured Caudovirales phage clone 2AX_7, partial genome	6093-6124	5	0.844
CP027705_2	2.7\|979238\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979238-979269	32	MF417884	Uncultured Caudovirales phage clone 8AX_2, partial genome	8377-8408	5	0.844
CP027705_2	2.7\|979238\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979238-979269	32	MF417873	Uncultured Caudovirales phage clone 7S_5, partial genome	23333-23364	5	0.844
CP027705_2	2.7\|979238\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979238-979269	32	MF417979	Uncultured Caudovirales phage clone 8S_1, partial genome	6318-6349	5	0.844
CP027705_2	2.7\|979238\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979238-979269	32	MT121966	Pseudomonas phage SC_8_H2H8_2017 translation initiation factor IF-3, replication protein P, integrase, terminase, terminase A, capsid family protein, tail protein, and minor tail protein L genes, complete cds	45980-46011	5	0.844
CP027705_2	2.7\|979238\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979238-979269	32	MF417966	Uncultured Caudovirales phage clone 9AX_1, partial genome	5746-5777	5	0.844
CP027705_2	2.7\|979238\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979238-979269	32	MF417882	Uncultured Caudovirales phage clone 10F_10, partial genome	24566-24597	5	0.844
CP027705_2	2.11\|979478\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979478-979509	32	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	693765-693796	7	0.781
CP027705_2	2.12\|979538\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979538-979569	32	NZ_CP012399	Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence	27966-27997	7	0.781
CP027705_2	2.13\|979598\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979598-979629	32	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	1163644-1163675	7	0.781
CP027705_2	2.14\|979658\|32\|CP027705\|CRISPRCasFinder,CRT	979658-979689	32	CP040041	Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence	374206-374237	8	0.75
CP027705_2	2.3\|978998\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	978998-979029	32	NC_004934	Streptomyces violaceoruber strain SANK95570 plasmid pSV2, complete sequence	40776-40807	9	0.719
CP027705_2	2.10\|979418\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979418-979449	32	NZ_CP047900	Pseudarthrobacter sp. YJ56 plasmid unnamed2, complete sequence	65325-65356	9	0.719
CP027705_2	2.10\|979418\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979418-979449	32	NZ_CP023073	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666d, complete sequence	62688-62719	9	0.719
CP027705_2	2.10\|979418\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979418-979449	32	NZ_CP026539	Desulfovibrio carbinolicus strain DSM 3852 plasmid pDCAR1, complete sequence	95725-95756	9	0.719
CP027705_2	2.11\|979478\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979478-979509	32	NZ_CP013069	Pannonibacter phragmitetus strain 31801 plasmid p.p-1, complete sequence	286925-286956	9	0.719
CP027705_2	2.11\|979478\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979478-979509	32	NZ_CP032313	Pannonibacter phragmitetus BB plasmid p.BB_1, complete sequence	155605-155636	9	0.719
CP027705_2	2.12\|979538\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979538-979569	32	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	283522-283553	9	0.719
CP027705_2	2.15\|979718\|32\|CP027705\|CRISPRCasFinder,CRT	979718-979749	32	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	64577-64608	9	0.719
CP027705_2	2.15\|979718\|32\|CP027705\|CRISPRCasFinder,CRT	979718-979749	32	MK249164	Blackfly microvirus SF02 isolate 079, complete genome	1150-1181	9	0.719

1. spacer 2.7|979238|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to MF417883 (Uncultured Caudovirales phage clone 7F_11, partial genome) position: , mismatch: 5, identity: 0.844

agagaacggtattcgcgccctgggcaagcttt	CRISPR spacer
ggagaatggtatccgcgccctgggcaagctcc	Protospacer
.*****.*****.*****************..

2. spacer 2.7|979238|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to MF417872 (Uncultured phage clone 7AX_2, partial genome) position: , mismatch: 5, identity: 0.844

agagaacggtattcgcgccctgggcaagcttt	CRISPR spacer
ggagaatggtatccgcgccctgggcaagctcc	Protospacer
.*****.*****.*****************..

3. spacer 2.7|979238|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to MF417962 (Uncultured Caudovirales phage clone 2AX_7, partial genome) position: , mismatch: 5, identity: 0.844

agagaacggtattcgcgccctgggcaagcttt	CRISPR spacer
ggagaatggtatccgcgccctgggcaagctcc	Protospacer
.*****.*****.*****************..

4. spacer 2.7|979238|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to MF417884 (Uncultured Caudovirales phage clone 8AX_2, partial genome) position: , mismatch: 5, identity: 0.844

agagaacggtattcgcgccctgggcaagcttt	CRISPR spacer
ggagaatggtatccgcgccctgggcaagctcc	Protospacer
.*****.*****.*****************..

5. spacer 2.7|979238|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to MF417873 (Uncultured Caudovirales phage clone 7S_5, partial genome) position: , mismatch: 5, identity: 0.844

agagaacggtattcgcgccctgggcaagcttt	CRISPR spacer
ggagaatggtatccgcgccctgggcaagctcc	Protospacer
.*****.*****.*****************..

6. spacer 2.7|979238|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to MF417979 (Uncultured Caudovirales phage clone 8S_1, partial genome) position: , mismatch: 5, identity: 0.844

agagaacggtattcgcgccctgggcaagcttt	CRISPR spacer
ggagaatggtatccgcgccctgggcaagctcc	Protospacer
.*****.*****.*****************..

7. spacer 2.7|979238|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to MT121966 (Pseudomonas phage SC_8_H2H8_2017 translation initiation factor IF-3, replication protein P, integrase, terminase, terminase A, capsid family protein, tail protein, and minor tail protein L genes, complete cds) position: , mismatch: 5, identity: 0.844

agagaacggtattcgcgccctgggcaagcttt	CRISPR spacer
cgaaaacggtatccgcgccctgggcaagctgc	Protospacer
 **.********.***************** .

8. spacer 2.7|979238|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to MF417966 (Uncultured Caudovirales phage clone 9AX_1, partial genome) position: , mismatch: 5, identity: 0.844

agagaacggtattcgcgccctgggcaagcttt	CRISPR spacer
ggagaatggtatccgcgccctgggcaagctcc	Protospacer
.*****.*****.*****************..

9. spacer 2.7|979238|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to MF417882 (Uncultured Caudovirales phage clone 10F_10, partial genome) position: , mismatch: 5, identity: 0.844

agagaacggtattcgcgccctgggcaagcttt	CRISPR spacer
ggagaatggtatccgcgccctgggcaagctcc	Protospacer
.*****.*****.*****************..

10. spacer 2.11|979478|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 7, identity: 0.781

aaacggcgccggtcatgcggaacaccaggcgc--	CRISPR spacer
aatcgccgccggtcatgcgga--accagccatcc	Protospacer
** ** ***************  ***** *..

11. spacer 2.12|979538|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 7, identity: 0.781

gaagcgatgtatgccgagcttacgcgcctgat	CRISPR spacer
cggccgatgtatgccgagctgacgcgcctggc	Protospacer
 .. **************** *********..

12. spacer 2.13|979598|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 7, identity: 0.781

agcgacaccttggccttggccagagggaagcg	CRISPR spacer
atcagcgccttggccttggccagcgggacgcc	Protospacer
* *..*.**************** **** **

13. spacer 2.14|979658|32|CP027705|CRISPRCasFinder,CRT matches to CP040041 (Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tcagaaacgaaaacccctgcatttgcagggat	CRISPR spacer
taacccaaaaaaatccctgcattcgcagggat	Protospacer
* *   * .****.*********.********

14. spacer 2.3|978998|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to NC_004934 (Streptomyces violaceoruber strain SANK95570 plasmid pSV2, complete sequence) position: , mismatch: 9, identity: 0.719

tgaaacagtcggctagcagcgccaggacatag	CRISPR spacer
ggccgtggtcgtcaagcagcgccaggacatgg	Protospacer
 *  ...**** * ****************.*

15. spacer 2.10|979418|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047900 (Pseudarthrobacter sp. YJ56 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tggagaaatccgccggcgagccggtgacagag	CRISPR spacer
tctcacaacccgccggcaagccggtgacaccg	Protospacer
*   . **.********.***********  *

16. spacer 2.10|979418|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023073 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666d, complete sequence) position: , mismatch: 9, identity: 0.719

tggagaaatccgccggcgagccggtgacagag	CRISPR spacer
accagaattccgccggcgagcccgtgccgcgg	Protospacer
   **** ************** *** *. .*

17. spacer 2.10|979418|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026539 (Desulfovibrio carbinolicus strain DSM 3852 plasmid pDCAR1, complete sequence) position: , mismatch: 9, identity: 0.719

tggagaaatccgccggcgagccggtgacagag	CRISPR spacer
tggaggaatgcgccggcgagccgacggtcgca	Protospacer
*****.*** *************..*.. * .

18. spacer 2.11|979478|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013069 (Pannonibacter phragmitetus strain 31801 plasmid p.p-1, complete sequence) position: , mismatch: 9, identity: 0.719

aaacggcgccggtcatgcggaacaccaggcgc	CRISPR spacer
cctcgccgccggtcaggcggaacaccggcgtc	Protospacer
   ** ********* **********.*   *

19. spacer 2.11|979478|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032313 (Pannonibacter phragmitetus BB plasmid p.BB_1, complete sequence) position: , mismatch: 9, identity: 0.719

aaacggcgccggtcatgcggaacaccaggcgc	CRISPR spacer
cctcgccgccggtcaggcggaacaccggcgtc	Protospacer
   ** ********* **********.*   *

20. spacer 2.12|979538|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 9, identity: 0.719

gaagcgatgtatgccgagcttacgcgcctgat	CRISPR spacer
cggccgatgtatgccgagctcacccgcctcgc	Protospacer
 .. ****************.** ***** ..

21. spacer 2.15|979718|32|CP027705|CRISPRCasFinder,CRT matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ttgccggcagcacgcagggccaggatgccgcg	CRISPR spacer
ccgcgcccagcgcccagggccaggatgccggt	Protospacer
..**   ****.* ****************

22. spacer 2.15|979718|32|CP027705|CRISPRCasFinder,CRT matches to MK249164 (Blackfly microvirus SF02 isolate 079, complete genome) position: , mismatch: 9, identity: 0.719

ttgccggcagcacgcagggccaggatgccgcg	CRISPR spacer
ttcaaatcagcacgcagggccaccatgccgat	Protospacer
**   . ***************  ******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

344102 : 352891

Enterobacteria_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZC15743.1\|344102_344984_-	dTDP-4-dehydrorhamnose reductase	Q684A9	Sulfolobus_virus	3.3e-05	30.6
AZC15744.1\|344980_345526_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.7e-50	55.9
AZC15745.1\|345522_346398_-	Glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	4.3e-106	63.9
AZC15746.1\|346394_347477_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.4e-100	54.2
AZC15747.1\|347682_350625_+	Aminotransferase, class III	A0A1V0SKB7	Klosneuvirus	1.3e-16	23.7
AZC15748.1\|350900_351779_+	N-carbamoylputrescine amidase	A7IVZ1	Paramecium_bursaria_Chlorella_virus	4.6e-76	48.0
AZC15749.1\|351784_352891_+	Agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	7.8e-105	51.4

DBSCAN-SWA_2

1309822 : 1399822

Pseudomonas_phage(38.24%)

plate,tail,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZC16617.1\|1309822_1311175_+\|protease	Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage	NA	NA	NA	NA
AZC16618.1\|1311249_1313640_+	Outer membrane protein assembly factor YaeT	NA	NA	NA	NA
AZC16619.1\|1313685_1314189_+	Outer membrane chaperone Skp, precursor	NA	NA	NA	NA
AZC16620.1\|1314192_1315248_+	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	NA	NA	NA
AZC16621.1\|1315361_1315802_+	3-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
AZC16622.1\|1315798_1316575_+	Acyl-ADP--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA
AZC16623.1\|1316577_1317708_+	Lipid-A-disaccharide synthase	NA	NA	NA	NA
AZC16624.1\|1317704_1318352_+	Ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	4.1e-29	38.6
AZC16625.1\|1318559_1322087_+	DNA polymerase III alpha subunit	A0A2L1IZ23	Streptomyces_phage	8.1e-196	37.9
AZC16626.1\|1322225_1323173_+	Acetyl-coenzyme A carboxyl transferase alpha chain	NA	NA	NA	NA
AZC16627.1\|1323305_1324622_+\|tRNA	tRNA(Ile)-lysidine synthetase	NA	NA	NA	NA
AZC16628.1\|1324667_1324811_+	hypothetical protein	NA	NA	NA	NA
AZC16629.1\|1324896_1326528_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	5.8e-157	53.1
AZC16630.1\|1326533_1327379_+	2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase	E3T537	Cafeteria_roenbergensis_virus	3.8e-51	42.0
AZC16631.1\|1327534_1328824_+	Enolase	A0A1X9I5Z8	Streptococcus_phage	1.7e-135	59.0
AZC16632.1\|1328996_1329275_+	Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	NA	NA	NA	NA
AZC16633.1\|1329271_1329979_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
AZC16634.1\|1330016_1330916_-	Transcriptional regulator, LysR family, in formaldehyde detoxification operon	NA	NA	NA	NA
AZC16635.1\|1331022_1332135_+	S-(hydroxymethyl)glutathione dehydrogenase	E3SJ82	Synechococcus_phage	2.8e-33	29.5
AZC16636.1\|1332226_1333072_+	S-formylglutathione hydrolase	NA	NA	NA	NA
AZC16637.1\|1333174_1333648_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AZC16638.1\|1333644_1334703_+\|tRNA	tRNA pseudouridine(13) synthase	NA	NA	NA	NA
AZC16639.1\|1334690_1335440_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.0e-67	53.4
AZC16640.1\|1335439_1336117_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.1e-43	49.5
AZC16641.1\|1336445_1337201_+	Murein hydrolase activator NlpD	A0A0S2SXL7	Bacillus_phage	5.7e-06	33.3
AZC16642.1\|1337311_1338319_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
AZC16643.1\|1338834_1339158_-	4Fe-4S dicluster domain	NA	NA	NA	NA
AZC16644.1\|1339301_1341881_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	6.9e-27	24.1
AZC16645.1\|1342067_1342811_+	Transcriptional regulator	B5TK58	Pseudomonas_phage	1.9e-126	90.7
AZC16646.1\|1343333_1343684_+	Holin	B5TK61	Pseudomonas_phage	7.8e-51	85.2
AZC16647.1\|1343731_1344391_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	8.2e-17	33.1
AZC16648.1\|1344387_1344978_+\|plate	Baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	8.8e-55	72.1
AZC16649.1\|1345021_1345207_+	hypothetical protein	NA	NA	NA	NA
AZC16650.1\|1345211_1345538_+\|plate	Phage baseplate assembly protein	A0A2H4JA09	uncultured_Caudovirales_phage	2.5e-35	67.6
AZC16651.1\|1345534_1346416_+\|plate	Baseplate assembly protein J	A0A2H4JFK9	uncultured_Caudovirales_phage	1.4e-112	71.7
AZC16652.1\|1346417_1347023_+\|tail	Phage tail fiber	A0A2H4JDH5	uncultured_Caudovirales_phage	4.9e-69	63.6
AZC16653.1\|1347019_1348855_+\|tail	Phage tail fiber protein	A0A2H4JF09	uncultured_Caudovirales_phage	1.0e-77	69.2
AZC16654.1\|1349266_1349392_+	hypothetical protein	NA	NA	NA	NA
AZC16655.1\|1349491_1350658_+\|tail	Phage tail sheath monomer	A0A2H4J869	uncultured_Caudovirales_phage	3.7e-182	81.2
AZC16656.1\|1350670_1351180_+\|tail	Phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	1.9e-66	74.3
AZC16657.1\|1351192_1351498_+	hypothetical protein	A0A2H4J873	uncultured_Caudovirales_phage	6.2e-20	54.8
AZC16658.1\|1351633_1354204_+\|tail	Phage tail length tape-measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	1.2e-68	32.8
AZC16659.1\|1354213_1355059_+	Phage protein U	A0A2H4J875	uncultured_Caudovirales_phage	7.8e-97	61.4
AZC16660.1\|1355033_1355240_+\|tail	Phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	9.9e-22	74.6
AZC16661.1\|1355298_1356342_+\|tail	Phage tail protein D	A0A2H4JBF6	uncultured_Caudovirales_phage	3.5e-147	75.5
AZC16662.1\|1356429_1357581_+	Putative peptidoglycan hydrolase YvbX	A0A2L0HM30	Microbacterium_phage	2.5e-05	24.6
AZC16663.1\|1357632_1357824_+	hypothetical protein	NA	NA	NA	NA
AZC16664.1\|1357915_1358407_+	Acyl-CoA dehydrogenase	H2BDC0	Pseudomonas_virus	6.7e-48	60.5
AZC16665.1\|1358415_1358763_+	hypothetical protein	NA	NA	NA	NA
AZC16666.1\|1358792_1359047_+	Phage protein	Q9MCA3	Pseudomonas_phage	1.1e-14	50.6
AZC16667.1\|1359104_1360520_+\|tail	Phage tail tape measure protein	A0A0S2SYD9	Pseudomonas_phage	1.5e-20	29.3
AZC16668.1\|1360558_1360897_+\|tail	Phage minor tail protein	K7PHJ6	Enterobacteria_phage	7.8e-32	56.2
AZC16669.1\|1360893_1362711_+	hypothetical protein	NA	NA	NA	NA
AZC16670.1\|1362710_1363097_+	hypothetical protein	A0A0S4L5F0	Pseudomonas_phage	5.3e-08	43.0
AZC16671.1\|1363392_1365453_+	hypothetical protein	A0A2I6PI67	Pseudomonas_phage	4.7e-10	25.9
AZC16672.1\|1365498_1366182_+\|tail	Phage minor tail protein	A0A2I6PIA7	Pseudomonas_phage	5.4e-88	66.5
AZC16673.1\|1366184_1366961_+\|tail	Phage tail assembly protein	A0A2I6PI52	Pseudomonas_phage	5.9e-83	55.6
AZC16674.1\|1367016_1367649_+\|tail	Phage tail assembly protein I	A0A2I6PI69	Pseudomonas_phage	1.8e-50	53.1
AZC16675.1\|1367713_1368322_+\|tail	Phage tail assembly protein I	F1C572	Cronobacter_phage	8.8e-42	45.9
AZC16676.1\|1368382_1371475_+\|tail	Phage tail fiber protein	Q3HQU5	Burkholderia_phage	3.3e-294	47.9
AZC16677.1\|1371758_1372442_+	hypothetical protein	NA	NA	NA	NA
AZC16678.1\|1372500_1373085_+	hypothetical protein	B5TK65	Pseudomonas_phage	4.6e-64	60.9
AZC16679.1\|1373081_1373264_+	Mu-like prophage FluMu protein GP38	B5TK66	Pseudomonas_phage	3.0e-22	83.3
AZC16680.1\|1373263_1374760_+\|tail	Bacteriophage tail sheath protein	B5TK67	Pseudomonas_phage	7.5e-252	89.2
AZC16681.1\|1374823_1375171_+\|tail	Phage tail tube protein	B5TK68	Pseudomonas_phage	3.4e-54	87.0
AZC16682.1\|1375167_1375464_+\|tail	Phage small tail protein E	B5TK69	Pseudomonas_phage	2.6e-39	88.8
AZC16683.1\|1375594_1377679_+\|tail	Phage tail length tape-measure protein	B5TK70	Pseudomonas_phage	1.0e-33	65.2
AZC16684.1\|1377665_1378904_+\|tail	Phage tail/DNA circulation protein	B5TK71	Pseudomonas_phage	8.6e-177	75.6
AZC16685.1\|1378907_1379948_+\|tail	Prophage tail protein	B5TK72	Pseudomonas_phage	4.2e-161	82.1
AZC16686.1\|1380031_1380541_+\|plate	Prophage baseplate assembly protein V	B5TK73	Pseudomonas_phage	1.6e-76	87.5
AZC16687.1\|1380540_1380939_+	Bacteriophage protein GP46	B5TK74	Pseudomonas_phage	7.7e-63	86.4
AZC16688.1\|1380928_1381969_+	Phage FluMu protein gp47	B5TK75	Pseudomonas_phage	2.4e-164	85.3
AZC16689.1\|1381965_1382556_+\|tail	Prophage tail protein	B5TK76	Pseudomonas_phage	1.8e-103	91.8
AZC16690.1\|1382566_1383505_+\|tail	Prophage tail fiber protein	B5TK77	Pseudomonas_phage	8.0e-58	51.4
AZC16691.1\|1383507_1383906_+	hypothetical protein	NA	NA	NA	NA
AZC16692.1\|1383919_1384840_+\|tail	Prophage tail fiber protein	B5TK77	Pseudomonas_phage	2.5e-24	81.8
AZC16693.1\|1384839_1385358_+	hypothetical protein	NA	NA	NA	NA
AZC16694.1\|1385497_1386427_+\|tail	Prophage tail fiber protein	B5TK81	Pseudomonas_phage	6.9e-38	38.0
AZC16695.1\|1386427_1386919_+	hypothetical protein	Q9ZXK5	Pseudomonas_virus	3.7e-22	43.9
AZC16696.1\|1387022_1387916_+\|tail	Phage tail fiber protein	B5TK81	Pseudomonas_phage	6.9e-43	40.1
AZC16697.1\|1387916_1388414_+	hypothetical protein	A0A291LAV4	Bordetella_phage	1.5e-18	42.3
AZC16698.1\|1388426_1388990_+	Lytic enzyme	B5TK83	Pseudomonas_phage	2.4e-78	75.3
AZC16699.1\|1389020_1389536_+	putative signal peptide protein	A0A1S5NQ26	Burkholderia_phage	9.2e-24	48.7
AZC16700.1\|1389554_1390079_+	Phage protein	B0ZSF6	Halomonas_phage	2.9e-09	28.6
AZC16701.1\|1390082_1390694_+\|plate	Baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	6.1e-43	59.0
AZC16702.1\|1390704_1391037_+\|plate	Baseplate assembly protein W	A0A2H4JI46	uncultured_Caudovirales_phage	4.7e-37	68.2
AZC16703.1\|1391033_1392029_+\|plate	Phage-related baseplate assembly protein	A0A2H4JC04	uncultured_Caudovirales_phage	3.2e-113	64.4
AZC16704.1\|1392025_1392760_+	Tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	7.9e-37	49.7
AZC16705.1\|1392756_1393293_+\|tail	Phage tail fiber	B0ZSG1	Halomonas_phage	1.1e-48	58.6
AZC16706.1\|1393400_1394153_+	hypothetical protein	NA	NA	NA	NA
AZC16707.1\|1394164_1394401_+	hypothetical protein	M4NK32	Synechococcus_phage	4.4e-05	41.7
AZC16708.1\|1394488_1394692_+	hypothetical protein	NA	NA	NA	NA
AZC16709.1\|1394694_1395861_+\|tail	Major tail sheath protein	B0ZSG8	Halomonas_phage	1.8e-123	57.0
AZC16710.1\|1395860_1396367_+	hypothetical protein	Q6R4W3	Vibrio_virus	1.4e-24	35.7
AZC16711.1\|1396625_1397195_+	hypothetical protein	B0ZSH0	Halomonas_phage	8.9e-28	38.5
AZC16712.1\|1397191_1397317_+	hypothetical protein	NA	NA	NA	NA
AZC16713.1\|1397323_1399822_+\|tail	Phage tail length tape-measure protein	NA	NA	NA	NA

DBSCAN-SWA_3

2260591 : 2307885

Pseudomonas_phage(45.45%)

terminase,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZC17539.1\|2260591_2262514_+\|tRNA	Threonyl-tRNA synthetase	A0A2K9L297	Tupanvirus	9.7e-127	38.5
AZC17540.1\|2262531_2263065_+	Translation initiation factor 3	A0A2I7S9Q1	Vibrio_phage	4.4e-13	39.1
AZC17541.1\|2263125_2263320_+	LSU ribosomal protein L35p	NA	NA	NA	NA
AZC17542.1\|2263350_2263707_+	LSU ribosomal protein L20p	NA	NA	NA	NA
AZC17543.1\|2263816_2264833_+\|tRNA	Phenylalanyl-tRNA synthetase alpha chain	A0A2I2L4E3	Orpheovirus	7.9e-27	32.9
AZC17544.1\|2264868_2267247_+\|tRNA	Phenylalanyl-tRNA synthetase beta chain	NA	NA	NA	NA
AZC17545.1\|2267250_2267553_+	Integration host factor alpha subunit	A0A0H3UZA0	Geobacillus_virus	1.8e-11	38.9
AZC17546.1\|2267533_2267890_+	Transcriptional regulator, MerR family	NA	NA	NA	NA
AZC17547.1\|2268142_2269255_-	Integrase	A0A0U4JIT5	Pseudomonas_phage	3.6e-33	32.5
AZC17548.1\|2269812_2269992_-	hypothetical protein	NA	NA	NA	NA
AZC17549.1\|2270272_2270917_+	hypothetical protein	A0A0U4J8W4	Pseudomonas_phage	2.4e-74	62.4
AZC17550.1\|2271527_2272094_+	hypothetical protein	NA	NA	NA	NA
AZC17551.1\|2272245_2273475_-	hypothetical protein	NA	NA	NA	NA
AZC17552.1\|2274248_2275166_+	hypothetical protein	NA	NA	NA	NA
AZC17553.1\|2275708_2275894_+	hypothetical protein	NA	NA	NA	NA
AZC17554.1\|2276213_2276603_+	hypothetical protein	NA	NA	NA	NA
AZC17555.1\|2276602_2277394_+	Putative antirepressor	A0A1V1FD44	Vibrio_phage	6.1e-27	37.8
AZC17556.1\|2277501_2278251_+	hypothetical protein	NA	NA	NA	NA
AZC17557.1\|2278243_2278444_+	hypothetical protein	NA	NA	NA	NA
AZC17558.1\|2278564_2278990_-	putative phage repressor	A0A2H4JAJ5	uncultured_Caudovirales_phage	2.7e-05	41.4
AZC17559.1\|2279089_2279335_+	putative phage-associated protein YdaS	NA	NA	NA	NA
AZC17560.1\|2279459_2279882_+	hypothetical protein	NA	NA	NA	NA
AZC17561.1\|2280465_2280729_+	hypothetical protein	NA	NA	NA	NA
AZC17562.1\|2280725_2280947_+	Phage protein	A0A1W6JTF8	Pseudomonas_phage	1.2e-17	70.2
AZC17563.1\|2280950_2281688_+	Primosomal protein I	A0A0P0ZC04	Stx2-converting_phage	2.1e-45	52.0
AZC17564.1\|2281668_2282475_+	Phage DNA helicase loader	A0A1W6JTD8	Pseudomonas_phage	9.5e-76	54.2
AZC17565.1\|2282471_2283857_+	Replicative DNA helicase (DnaB)	A0A2H4J8N1	uncultured_Caudovirales_phage	1.2e-166	63.3
AZC17566.1\|2283924_2284611_+	hypothetical protein	NA	NA	NA	NA
AZC17567.1\|2284754_2285282_-	hypothetical protein	NA	NA	NA	NA
AZC17568.1\|2286248_2286578_+	hypothetical protein	A0A088FVG2	Escherichia_phage	5.7e-19	48.1
AZC17569.1\|2286574_2286919_+	hypothetical protein	NA	NA	NA	NA
AZC17570.1\|2287011_2287374_-	hypothetical protein	NA	NA	NA	NA
AZC17571.1\|2287419_2288088_+	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	1.8e-104	88.4
AZC17572.1\|2288120_2288582_+	Phage protein	A0A0S2SY97	Pseudomonas_phage	5.6e-49	76.2
AZC17573.1\|2288568_2289870_+\|terminase	Phage terminase	A0A1B1P9C9	Acinetobacter_phage	2.0e-144	58.0
AZC17574.1\|2289866_2291285_+	structural protein	A0A1B0VMH0	Pseudomonas_phage	6.2e-264	93.0
AZC17575.1\|2291259_2292345_+	Phage protein	A0A1B0VMF3	Pseudomonas_phage	9.5e-180	90.6
AZC17576.1\|2292752_2293481_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	3.1e-118	92.6
AZC17577.1\|2293493_2294456_+	putative phage protein	A0A1B0VMF8	Pseudomonas_phage	2.9e-164	90.6
AZC17578.1\|2294502_2295093_+	hypothetical protein	A0A1B0VMF7	Pseudomonas_phage	1.5e-65	69.2
AZC17579.1\|2295152_2295656_+	phage-related conserved hypothetical protein	A0A1B0VND3	Pseudomonas_phage	8.0e-73	83.8
AZC17580.1\|2295658_2296030_+	phage-related conserved hypothetical protein	A0A1B0VRJ4	Pseudomonas_phage	2.3e-48	76.4
AZC17581.1\|2296026_2296680_+	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	2.7e-97	82.9
AZC17582.1\|2296676_2297093_+	hypothetical protein	A0A2H4J4N2	uncultured_Caudovirales_phage	6.9e-46	63.0
AZC17583.1\|2297166_2297820_+	putative phage protein	A0A1S5R1H0	Pseudomonas_phage	5.9e-52	48.4
AZC17584.1\|2297823_2298204_+	hypothetical protein	A0A2H4IYQ5	uncultured_Caudovirales_phage	7.7e-28	48.0
AZC17585.1\|2298269_2298521_+	hypothetical protein	A0A2H4J4F7	uncultured_Caudovirales_phage	2.8e-18	55.1
AZC17586.1\|2298517_2301805_+\|tail	Phage tail length tape-measure protein 1	A0A2H4J9A1	uncultured_Caudovirales_phage	4.3e-98	37.7
AZC17587.1\|2301804_2302143_+\|tail	Phage minor tail protein	A0A2H4JI07	uncultured_Caudovirales_phage	1.3e-47	75.9
AZC17588.1\|2302152_2302902_+\|tail	Phage minor tail protein	A0A2H4J4Q5	uncultured_Caudovirales_phage	1.1e-118	79.1
AZC17589.1\|2302904_2303669_+\|tail	Phage tail assembly protein	A0A2H4J1J7	uncultured_Caudovirales_phage	5.4e-121	76.9
AZC17590.1\|2303854_2304094_-	hypothetical protein	NA	NA	NA	NA
AZC17591.1\|2305232_2305544_+	hypothetical protein	NA	NA	NA	NA
AZC17592.1\|2306589_2306859_+	hypothetical protein	NA	NA	NA	NA
AZC17593.1\|2306861_2307212_+	Pyruvate:ferredoxin oxidoreductase	NA	NA	NA	NA
AZC17594.1\|2307702_2307885_+\|tail	Phage tail assembly protein I	A0A2H4JG90	uncultured_Caudovirales_phage	3.8e-25	94.9

DBSCAN-SWA_4

4341915 : 4348110

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZC19419.1\|4341915_4342308_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.5e-53	79.1
AZC19420.1\|4342309_4342672_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.2e-40	68.3
AZC19421.1\|4342671_4342968_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	9.9e-31	68.7
AZC19422.1\|4342964_4343300_+\|tRNA	tRNA 2-thiouridine synthesis protein TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	2.1e-45	79.3
AZC19423.1\|4343296_4344298_+	Anthranilate phosphoribosyltransferase like	A0A2H4JBY5	uncultured_Caudovirales_phage	2.5e-166	85.0
AZC19424.1\|4344386_4345388_+	Glutathione S-transferase, omega	NA	NA	NA	NA
AZC19425.1\|4345434_4346829_-	Precorrin-2 oxidase	NA	NA	NA	NA
AZC19426.1\|4346829_4348110_-\|tRNA	Seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-99	54.2

DBSCAN-SWA_5

4450071 : 4509843

Pseudomonas_phage(43.4%)

terminase,tail,integrase,holin,protease

attL 4449856:4449871|attR 4507498:4507513

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4449856:4449871	attL	NA	NA	NA	NA
AZC19516.1\|4450071_4452468_-\|protease	ATP-dependent protease La Type I	A0A0R6PGP8	Moraxella_phage	4.9e-221	52.1
AZC19517.1\|4452631_4453915_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.1e-138	59.3
AZC19518.1\|4454021_4454663_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	5.4e-58	59.1
AZC19519.1\|4454755_4456066_-	Cell division trigger factor	NA	NA	NA	NA
AZC19520.1\|4456078_4456195_+	hypothetical protein	NA	NA	NA	NA
AZC19521.1\|4456236_4456386_-	hypothetical protein	NA	NA	NA	NA
AZC19522.1\|4457075_4457930_+	Methenyltetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	3.2e-29	33.9
AZC19523.1\|4458415_4459141_+	hypothetical protein	NA	NA	NA	NA
AZC19524.1\|4459239_4459527_+	hypothetical protein	NA	NA	NA	NA
AZC19525.1\|4459529_4460234_+	hypothetical protein	NA	NA	NA	NA
AZC19526.1\|4460352_4461123_-	Dam modification methylase	C7BGE1	Burkholderia_phage	1.4e-100	68.6
AZC19527.1\|4461259_4461535_-	Lipoprotein	A0A125RNP3	Pseudomonas_phage	9.2e-23	69.3
AZC19528.1\|4461591_4461954_-	hypothetical protein	NA	NA	NA	NA
AZC19529.1\|4461950_4462394_-	structural protein P5, putative	A0A2H4J6R1	uncultured_Caudovirales_phage	2.2e-34	52.8
AZC19530.1\|4462483_4463329_-	hypothetical protein	NA	NA	NA	NA
AZC19531.1\|4463615_4466705_-\|tail	Phage tail fiber protein	Q3HQU5	Burkholderia_phage	6.5e-282	46.1
AZC19532.1\|4466763_4467345_-\|tail	Phage tail assembly protein I	A0A2I6PI69	Pseudomonas_phage	1.1e-44	52.6
AZC19533.1\|4467857_4468628_-\|tail	Phage tail assembly protein	A0A2I6PI52	Pseudomonas_phage	5.9e-83	55.6
AZC19534.1\|4468630_4469314_-\|tail	Phage minor tail protein	A0A2I6PIA7	Pseudomonas_phage	7.8e-87	66.1
AZC19535.1\|4469512_4469899_-	hypothetical protein	A0A0A0YUD8	Pseudomonas_phage	1.6e-09	48.7
AZC19536.1\|4469899_4471255_-\|tail	L-shaped tail fiber protein	NA	NA	NA	NA
AZC19537.1\|4471251_4471590_-\|tail	Phage minor tail protein	A0A1B0VMG7	Pseudomonas_phage	6.2e-29	53.6
AZC19538.1\|4471644_4474713_-\|tail	Phage tail length tape-measure protein 1	A0A2H4J7J3	uncultured_Caudovirales_phage	1.4e-159	46.4
AZC19539.1\|4474716_4474974_-	hypothetical protein	A0A2H4JBP7	uncultured_Caudovirales_phage	6.2e-29	73.5
AZC19540.1\|4475030_4475414_-	hypothetical protein	A0A2H4IYQ5	uncultured_Caudovirales_phage	3.6e-49	75.6
AZC19541.1\|4475423_4476080_-	putative phage protein	A0A0S2SYG8	Pseudomonas_phage	5.5e-90	75.7
AZC19542.1\|4476118_4476547_-	hypothetical protein	A0A2H4J5P1	uncultured_Caudovirales_phage	6.8e-57	79.0
AZC19543.1\|4476543_4476981_-	hypothetical protein	A0A2H4J3F7	uncultured_Caudovirales_phage	6.5e-47	63.1
AZC19544.1\|4476982_4477372_-	hypothetical protein	A0A2H4JAS3	uncultured_Caudovirales_phage	2.8e-33	55.5
AZC19545.1\|4477374_4478448_-	hypothetical protein	A0A2H4IY91	uncultured_Caudovirales_phage	8.4e-104	59.1
AZC19546.1\|4478444_4478966_-	hypothetical protein	A0A059VG19	Pseudomonas_phage	8.7e-30	48.2
AZC19547.1\|4479007_4479409_-	hypothetical protein	NA	NA	NA	NA
AZC19548.1\|4479421_4480348_-	hypothetical protein	L7TMZ5	Rhizobium_phage	2.9e-100	60.3
AZC19549.1\|4480373_4480802_-	hypothetical protein	A0A2R3UAC1	Siphoviridae_environmental_samples	2.9e-23	47.3
AZC19550.1\|4480801_4481728_-	hypothetical protein	A0A2H4J6J7	uncultured_Caudovirales_phage	1.5e-77	68.3
AZC19551.1\|4481764_4481887_+	hypothetical protein	NA	NA	NA	NA
AZC19552.1\|4481910_4483242_-	putative bacteriophage protein	A0A2H4J4I9	uncultured_Caudovirales_phage	7.1e-145	59.3
AZC19553.1\|4483241_4484528_-\|terminase	Phage terminase	A0A1B1P9C9	Acinetobacter_phage	9.6e-147	59.1
AZC19554.1\|4484514_4485285_-\|terminase	Putative terminase, small subunit	A0A1Y0SUQ3	Pseudomonas_phage	3.6e-56	53.2
AZC19555.1\|4485347_4485632_-\|holin	Phage holin	Q9MC42	Pseudomonas_phage	9.5e-23	58.1
AZC19556.1\|4485624_4485999_-\|holin	Phage holin	Q9MC43	Pseudomonas_phage	3.4e-36	66.9
AZC19557.1\|4486015_4486342_-	hypothetical protein	A0A2H4J517	uncultured_Caudovirales_phage	3.2e-06	35.0
AZC19558.1\|4486687_4486924_-	hypothetical protein	NA	NA	NA	NA
AZC19559.1\|4486953_4487835_-	hypothetical protein	J7HXH6	Pseudomonas_phage	3.3e-82	55.4
AZC19560.1\|4487866_4488310_-	hypothetical protein	H2BD71	Pseudomonas_phage	5.8e-43	60.6
AZC19561.1\|4488302_4489052_-	Polyphosphate kinase	A0A2H4J903	uncultured_Caudovirales_phage	3.0e-47	58.6
AZC19562.1\|4489763_4489976_-	Phage repressor protein CII	Q37905	Pseudomonas_phage	8.7e-21	65.7
AZC19563.1\|4490073_4490304_-	hypothetical protein	A0A1W6JTD1	Pseudomonas_phage	2.4e-16	56.8
AZC19564.1\|4490407_4491142_+	Phage repressor	J7I0S2	Pseudomonas_phage	7.6e-56	63.8
AZC19565.1\|4491978_4492230_+	hypothetical protein	NA	NA	NA	NA
AZC19566.1\|4492369_4492741_+	hypothetical protein	NA	NA	NA	NA
AZC19567.1\|4492737_4492971_+	hypothetical protein	NA	NA	NA	NA
AZC19568.1\|4492960_4493116_+	hypothetical protein	NA	NA	NA	NA
AZC19569.1\|4493112_4493403_+	hypothetical protein	NA	NA	NA	NA
AZC19570.1\|4493399_4493504_+	hypothetical protein	NA	NA	NA	NA
AZC19571.1\|4493514_4494033_+	Phage protein	J7I0S8	Pseudomonas_phage	4.3e-45	56.7
AZC19572.1\|4494029_4494350_+	hypothetical protein	NA	NA	NA	NA
AZC19573.1\|4494346_4495153_+	hypothetical protein	J7HXJ4	Pseudomonas_phage	2.1e-115	74.4
AZC19574.1\|4495159_4495369_+	hypothetical protein	J7I4L3	Pseudomonas_phage	2.9e-13	58.7
AZC19575.1\|4495365_4496301_+	hypothetical protein	J7HXB6	Pseudomonas_phage	8.9e-110	72.1
AZC19576.1\|4496307_4496508_+	hypothetical protein	A0A2H4J6K7	uncultured_Caudovirales_phage	2.9e-18	66.2
AZC19577.1\|4496519_4497554_+	DNA translocase FtsK	A0A2H4J7E6	uncultured_Caudovirales_phage	2.2e-72	47.1
AZC19578.1\|4497559_4499323_+	hypothetical protein	J7HXJ7	Pseudomonas_phage	2.1e-99	41.9
AZC19579.1\|4499383_4499995_+	DNA polymerase III alpha subunit	A0A2H4J7C9	uncultured_Caudovirales_phage	6.5e-85	73.9
AZC19580.1\|4500053_4501847_+	C-5 cytosine-specific DNA methylase	Q9ZXI4	Pseudomonas_virus	2.2e-213	73.8
AZC19581.1\|4501863_4502307_+	hypothetical protein	NA	NA	NA	NA
AZC19582.1\|4502345_4502480_+	hypothetical protein	NA	NA	NA	NA
AZC19583.1\|4502472_4503006_+	hypothetical protein	NA	NA	NA	NA
AZC19584.1\|4503002_4503470_+	hypothetical protein	A0A2H4J7W7	uncultured_Caudovirales_phage	1.9e-12	47.3
AZC19585.1\|4503462_4503876_+	hypothetical protein	NA	NA	NA	NA
AZC19586.1\|4503961_4504450_+	hypothetical protein	A0A2H4JF55	uncultured_Caudovirales_phage	1.8e-05	53.1
AZC19587.1\|4504446_4504641_+	hypothetical protein	A0A1P8DTR4	Salmonella_phage	9.4e-06	44.3
AZC19588.1\|4504631_4504916_+	Phage-associated homing endonuclease	S4TWR6	Salmonella_phage	7.1e-10	52.6
AZC19589.1\|4504912_4505296_+	hypothetical protein	J7I4M3	Pseudomonas_phage	4.1e-13	37.7
AZC19590.1\|4505629_4506832_+\|integrase	integrase, putative	J7HXC4	Pseudomonas_phage	3.2e-120	54.6
AZC19591.1\|4506954_4507893_+	Murein-DD-endopeptidase	NA	NA	NA	NA
4507498:4507513	attR	NA	NA	NA	NA
AZC19592.1\|4507951_4508623_-	TPR domain protein	NA	NA	NA	NA
AZC19593.1\|4508846_4509008_+	hypothetical protein	NA	NA	NA	NA
AZC19594.1\|4509087_4509843_-	Integral membrane protein TerC	A0A0R6PEZ3	Moraxella_phage	3.5e-40	40.1

DBSCAN-SWA_6

6248760 : 6312881

Escherichia_phage(12.5%)

holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZC21202.1\|6248760_6249879_-\|protease	ATP-dependent protease ATP-binding subunit-like protein amiB	A0A1C3S747	Escherichia_phage	5.1e-35	33.4
AZC21203.1\|6249963_6251004_-	Aliphatic amidase AmiE	NA	NA	NA	NA
AZC21204.1\|6251318_6252476_-	Putative acid--amine ligase YgiC	Q19CT2	Aeromonas_virus	5.2e-67	36.9
AZC21205.1\|6252472_6253261_-	putative integral membrane protein	NA	NA	NA	NA
AZC21206.1\|6253271_6253700_-	Membrane protein	NA	NA	NA	NA
AZC21207.1\|6253804_6254371_-	hypothetical protein	NA	NA	NA	NA
AZC21208.1\|6254367_6254589_-	hypothetical protein	NA	NA	NA	NA
AZC21209.1\|6254619_6255189_+	hypothetical protein	NA	NA	NA	NA
AZC21210.1\|6255419_6256619_-	Glutathione-independent formaldehyde dehydrogenase	A0A2K9L7I1	Tupanvirus	4.9e-12	28.9
AZC21211.1\|6256779_6257637_-	Formyltetrahydrofolate deformylase	NA	NA	NA	NA
AZC21212.1\|6257743_6258376_-	Sarcosine oxidase gamma subunit	NA	NA	NA	NA
AZC21213.1\|6258506_6261524_-	Sarcosine oxidase alpha subunit	NA	NA	NA	NA
AZC21214.1\|6261520_6261823_-	Sarcosine oxidase delta subunit	NA	NA	NA	NA
AZC21215.1\|6261974_6263225_-	Sarcosine oxidase beta subunit	NA	NA	NA	NA
AZC21216.1\|6263248_6264502_-	Serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	3.9e-100	53.2
AZC21217.1\|6265423_6265687_+	hypothetical protein	NA	NA	NA	NA
AZC21218.1\|6265726_6266479_-	TraX family protein	NA	NA	NA	NA
AZC21219.1\|6266594_6267635_+	Low-specificity L-threonine aldolase	NA	NA	NA	NA
AZC21220.1\|6267785_6269231_+	Cytosine/purine/uracil/thiamine/allantoin permease family protein	NA	NA	NA	NA
AZC21221.1\|6269227_6270052_+	carbon-nitrogen hydrolase family protein	M1I6H3	Paramecium_bursaria_Chlorella_virus	5.8e-20	35.4
AZC21222.1\|6270121_6271222_-	GbcB Glycine betaine demethylase subunit B	NA	NA	NA	NA
AZC21223.1\|6271512_6272805_+	GbcA Glycine betaine demethylase subunit A	NA	NA	NA	NA
AZC21224.1\|6272889_6274167_-	hypothetical protein	NA	NA	NA	NA
AZC21225.1\|6274213_6276082_-	hypothetical protein	NA	NA	NA	NA
AZC21226.1\|6276140_6279593_-	putative cholesterol oxidase	NA	NA	NA	NA
AZC21227.1\|6279614_6279746_+	hypothetical protein	NA	NA	NA	NA
AZC21228.1\|6280671_6281442_-	Electron transfer flavoprotein, beta subunit	NA	NA	NA	NA
AZC21229.1\|6281452_6282676_-	Electron transfer flavoprotein, alpha subunit	NA	NA	NA	NA
AZC21230.1\|6282675_6284649_-	DgcB Dimethylglycine demethylase subunit B	NA	NA	NA	NA
AZC21231.1\|6284852_6286913_-	DgcA Dimethylglycine demethylase subunit A	NA	NA	NA	NA
AZC21232.1\|6286928_6287459_-	putative hydrocarbon binding protein (contains V4R domain)	NA	NA	NA	NA
AZC21233.1\|6287669_6288647_-	Microsomal dipeptidase	NA	NA	NA	NA
AZC21234.1\|6288989_6289394_+	hypothetical protein	NA	NA	NA	NA
AZC21235.1\|6289564_6290455_+	Transcriptional regulator, LysR family	NA	NA	NA	NA
AZC21236.1\|6290620_6291037_+	hypothetical protein	NA	NA	NA	NA
AZC21237.1\|6291295_6292243_-	Carnitine operon transcriptional regulator	NA	NA	NA	NA
AZC21238.1\|6292436_6293381_+	L-Carnitine transporter	NA	NA	NA	NA
AZC21239.1\|6293469_6294357_+	hypothetical protein	NA	NA	NA	NA
AZC21240.1\|6294534_6295500_+	Carnitine 3-dehydrogenase	NA	NA	NA	NA
AZC21241.1\|6295583_6296060_+	Carnitine utilization associated thioesterase	NA	NA	NA	NA
AZC21242.1\|6296085_6297246_+	Gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
AZC21243.1\|6297257_6298208_-	hypothetical protein	NA	NA	NA	NA
AZC21244.1\|6298438_6298858_-	hypothetical protein	NA	NA	NA	NA
AZC21245.1\|6299111_6299375_+	hypothetical protein	NA	NA	NA	NA
AZC21246.1\|6299441_6299888_+	Aminoglycoside N(6')-acetyltransferase	NA	NA	NA	NA
AZC21247.1\|6299910_6301014_-	Transcriptional regulator, AraC family	NA	NA	NA	NA
AZC21248.1\|6301431_6302808_-	L-serine dehydratase, beta subunit	NA	NA	NA	NA
AZC21249.1\|6303237_6304185_+\|holin	Choline binding ABC transporter protein ChoX	NA	NA	NA	NA
AZC21250.1\|6304251_6305097_+\|holin	Choline binding ABC transport system permease protein ChoW	NA	NA	NA	NA
AZC21251.1\|6305093_6306272_+\|holin	Choline binding ABC transport system ATP-binding protein ChoV	G3M9Y6	Bacillus_virus	7.7e-26	37.2
AZC21252.1\|6306438_6308436_-\|holin	High-affinity choline uptake protein BetT	A0A2I7QNT1	Vibrio_phage	7.0e-19	27.1
AZC21253.1\|6308568_6308775_+	hypothetical protein	NA	NA	NA	NA
AZC21254.1\|6308861_6309455_+	HTH-type transcriptional regulator BetI	NA	NA	NA	NA
AZC21255.1\|6309561_6311034_+	Betaine aldehyde dehydrogenase	NA	NA	NA	NA
AZC21256.1\|6311177_6312881_+\|holin	Choline dehydrogenase	A0A1V0S9M4	Catovirus	1.1e-49	29.4

Anti-CRISPR protein detection

Acr_ID: CP027705.1|AZC19525.1|4459529_4460234_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: CP027705.1|AZC19582.1|4502345_4502480_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP027705.1|AZC19525.1|4459529_4460234_+|hypothetical-protein

4459529_4460234_+

234 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|79	0.4107142857142857	0.9487179487179487	0.9824561403508771

4450071-4509843

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP027705_2	TypeI-F	2.10\|979418\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979418-979449	32	4498662-4498693	1
CP027705_2	TypeI-F	2.11\|979478\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979478-979509	32	4458827-4458796	0

1. spacer 2.10|979418|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to CP027705 position: 4498662-4498693, mismatch: 1

tggagaaatccgccggcgagccggtgacagag	CRISPR spacer
tggagaaatccgccggcgaaccggtgacagag	Protospacer
*******************.************

2. spacer 2.11|979478|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to CP027705 position: 4458827-4458796, mismatch: 0

aaacggcgccggtcatgcggaacaccaggcgc	CRISPR spacer
aaacggcgccggtcatgcggaacaccaggcgc	Protospacer
********************************

CP027705.1|AZC19582.1|4502345_4502480_+|hypothetical-protein

4502345_4502480_+

44 aa aa

4450071-4509843

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP027705_2	TypeI-F	2.10\|979418\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979418-979449	32	4498662-4498693	1
CP027705_2	TypeI-F	2.11\|979478\|32\|CP027705\|PILER-CR,CRISPRCasFinder,CRT	979478-979509	32	4458827-4458796	0

1. spacer 2.10|979418|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to CP027705 position: 4498662-4498693, mismatch: 1

tggagaaatccgccggcgagccggtgacagag	CRISPR spacer
tggagaaatccgccggcgaaccggtgacagag	Protospacer
*******************.************

2. spacer 2.11|979478|32|CP027705|PILER-CR,CRISPRCasFinder,CRT matches to CP027705 position: 4458827-4458796, mismatch: 0

aaacggcgccggtcatgcggaacaccaggcgc	CRISPR spacer
aaacggcgccggtcatgcggaacaccaggcgc	Protospacer
********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027705

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information