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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP027754 Pseudomonas synxantha strain 30B chromosome, complete genome 4 crisprs DEDDh,DinG,csa3,cas3 0 1 7 0

Results visualization

1. CP027754
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027754_1 3154129-3154223 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027754_2 3209351-3209444 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027754_3 3544077-3544171 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027754_5 6139598-6139708 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP027754_4 4.1|4108164|25|CP027754|PILER-CR 4108164-4108188 25 KU708004 Pseudomonas phage phiAH14a, complete genome 21310-21334 2 0.92

1. spacer 4.1|4108164|25|CP027754|PILER-CR matches to KU708004 (Pseudomonas phage phiAH14a, complete genome) position: , mismatch: 2, identity: 0.92

cgctcggagatttatccgaggtaga	CRISPR spacer
tgctcggagatttctccgaggtaga	Protospacer
.************ ***********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1415404 : 1545603 157 Pseudomonas_phage(28.41%) plate,tail,integrase,tRNA attL 1411197:1411229|attR 1542603:1542635
DBSCAN-SWA_2 1582882 : 1632607 76 uncultured_Caudovirales_phage(55.36%) tail,integrase,terminase attL 1579578:1579594|attR 1636026:1636042
DBSCAN-SWA_3 1673787 : 1678772 6 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_4 1933152 : 1997443 68 Pseudomonas_virus(55.0%) plate,terminase,head,integrase,tRNA,tail,protease,capsid attL 1952361:1952376|attR 1966730:1966745
DBSCAN-SWA_5 4036480 : 4128301 125 Pseudomonas_phage(61.29%) integrase,tail,terminase,transposase attL 4059228:4059244|attR 4130234:4130250
DBSCAN-SWA_6 4149731 : 4155956 8 uncultured_Caudovirales_phage(83.33%) tRNA NA
DBSCAN-SWA_7 6351884 : 6363790 10 Mannheimia_phage(28.57%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage