CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027757	Pseudomonas synxantha strain R2-4-08W chromosome, complete genome	3 crisprs	DEDDh,DinG,csa3,cas3,WYL	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027757_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027757_1

2709607-2709720

Orphan

Consensus_repeat	Method
TGTGGGAGGGGGCTTGCCCCCGATGGCGGCCTCACAGCCGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027757_1

>merge|CP027757|1|2709607-2709720|CRISPRCasFinder
TGTGGGAGGGGGCTTGCCCCCGATGGCGGCCTCACAGCCGACCGGTATCTAACTGACGGTCTCGGTCCAAATGTGGGAGGGGGCTTGCTCCCGATGGCGGCCTCACAGCCGACC

>CP027757|1|1|2709607-2709720|CRISPRCasFinder
TGTGGGAGGGGGCTTGCCCCCGATGGCGGCCTCACAGCCGACC	GGTATCTAACTGACGGTCTCGGTCCAAA
TGTGGGAGGGGGCTTGCTCCCGATGGCGGCCTCACAGCCGACC

Protein	Signature genes	Signature genes Name	Protein_function
CP027757.1\|AZE72649.1\|2717281_2718277_+\|3-oxoacyl-ACP-synthase	unknown	unknown	gnl\|CDD\|339254
CP027757.1\|AZE72644.1\|2709077_2709515_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372505
CP027757.1\|AZE72643.1\|2708594_2708984_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371400
CP027757.1\|AZE72642.1\|2706373_2708500_-\|Outer-membrane-vitamin-B12-receptor-BtuB	unknown	unknown	gnl\|CDD\|238657
CP027757.1\|AZE72650.1\|2718317_2719304_+\|3-oxoacyl-ACP-synthase	unknown	unknown	gnl\|CDD\|379634
CP027757.1\|AZE72641.1\|2705244_2706252_+\|putative-periplasmic-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270359
CP027757.1\|AZE72640.1\|2704643_2705114_+\|hypothetical-protein	unknown	unknown	unknown
CP027757.1\|AZE72648.1\|2716243_2717095_+\|hypothetical-protein	unknown	unknown	unknown
CP027757.1\|AZE72652.1\|2720752_2722201_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176469
CP027757.1\|AZE72639.1\|2703999_2704275_-\|hypothetical-protein	unknown	unknown	unknown
CP027757.1\|AZE72645.1\|2710349_2711516_+\|Multidrug-efflux-system,-membrane-fusion-component-MexP	unknown	unknown	gnl\|CDD\|273776
CP027757.1\|AZE72647.1\|2714685_2716137_+\|Multidrug-efflux-system,-outer-membrane-factor-lipoprotein-OpmE	unknown	unknown	gnl\|CDD\|273830
CP027757.1\|AZE72635.1\|2702537_2702942_+\|DksA-family-protein	unknown	unknown	gnl\|CDD\|274124
CP027757.1\|AZE72636.1\|2703141_2703345_+\|hypothetical-protein	unknown	unknown	unknown
CP027757.1\|AZE72653.1\|2722238_2723312_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|316372
CP027757.1\|AZE72638.1\|2703658_2703889_-\|hypothetical-protein	unknown	unknown	unknown
CP027757.1\|AZE72646.1\|2711512_2714689_+\|Multidrug-efflux-system,-inner-membrane-proton/drug-antiporter-(RND-type)-MexQ	unknown	unknown	gnl\|CDD\|223911
CP027757.1\|AZE72651.1\|2719334_2720753_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176469
CP027757.1\|AZE72654.1\|2723432_2723762_+\|Valyl-tRNA-synthetase	unknown	unknown	unknown
CP027757.1\|AZE72637.1\|2703346_2703589_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378527

Protein	Function_ID	Function_description	E-value
CP027757.1\|AZE72649.1\|2717281_2718277_+\|3-oxoacyl-ACP-synthase	gnl\|CDD\|339254	pfam14515, HOASN, Haem-oxygenase-associated N-terminal helices. This domain represents a pair of alpha helices, which are found at the N-terminus of some Haem-oxygenase globular domain.	5.46243e-26
CP027757.1\|AZE72644.1\|2709077_2709515_+\|hypothetical-protein	gnl\|CDD\|372505	pfam13160, DUF3995, Protein of unknown function (DUF3995). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 138 and 149 amino acids in length. There are two completely conserved residues (W and P) that may be functionally important.	5.51536e-19
CP027757.1\|AZE72643.1\|2708594_2708984_-\|hypothetical-protein	gnl\|CDD\|371400	pfam11162, DUF2946, Protein of unknown function (DUF2946). This family of proteins has no known function.	2.53228e-07
CP027757.1\|AZE72642.1\|2706373_2708500_-\|Outer-membrane-vitamin-B12-receptor-BtuB	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	5.2611e-74
CP027757.1\|AZE72650.1\|2718317_2719304_+\|3-oxoacyl-ACP-synthase	gnl\|CDD\|379634	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme. The CADD, Chlamydia protein associating with death domains, crystal structure reveals a dimer of seven-helical bundles. Each bundle contains a di-iron centre adjacent to an internal cavity that forms an active site similar to that of methane mono-oxygenase hydrolase.	8.91652e-14
CP027757.1\|AZE72641.1\|2705244_2706252_+\|putative-periplasmic-substrate-binding-protein	gnl\|CDD\|270359	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.24231e-117
CP027757.1\|AZE72647.1\|2714685_2716137_+\|Multidrug-efflux-system,-outer-membrane-factor-lipoprotein-OpmE	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.5568e-71
CP027757.1\|AZE72652.1\|2720752_2722201_+\|hypothetical-protein	gnl\|CDD\|176469	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.	4.56481e-178
CP027757.1\|AZE72645.1\|2710349_2711516_+\|Multidrug-efflux-system,-membrane-fusion-component-MexP	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	9.07052e-80
CP027757.1\|AZE72635.1\|2702537_2702942_+\|DksA-family-protein	gnl\|CDD\|274124	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].	9.92716e-28
CP027757.1\|AZE72653.1\|2722238_2723312_+\|SAM-dependent-methyltransferase	gnl\|CDD\|316372	pfam13847, Methyltransf_31, Methyltransferase domain. This family appears to have methyltransferase activity.	1.72243e-16
CP027757.1\|AZE72651.1\|2719334_2720753_+\|hypothetical-protein	gnl\|CDD\|176469	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.	0
CP027757.1\|AZE72646.1\|2711512_2714689_+\|Multidrug-efflux-system,-inner-membrane-proton/drug-antiporter-(RND-type)-MexQ	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
CP027757.1\|AZE72637.1\|2703346_2703589_-\|hypothetical-protein	gnl\|CDD\|378527	pfam10982, DUF2789, Protein of unknown function (DUF2789). This bacterial family of proteins has no known function.	8.85761e-33

>CP027757.1|AZE72644.1|2709077_2709515_+|hypothetical-protein
MSFVIARWIVGVFTFISMVHLYWAAGGKFGSLAAIPQLPGEFASGPRPAFKPSALGTFLVAMGLVAIALLVCLRAGLYFTPVSHGALQWGISAIAVLFFARAIGDSELVGFFKKVGGSRFARLDTYVYSPLCLVLGAGLLVVAWT
>CP027757.1|AZE72643.1|2708594_2708984_-|hypothetical-protein
MKLARADRSLIAWMLYCCVLFNVFACSIGHGQMVGMQLNGISGQFCTVDPRTQAPLQNNSTDENLPTLSKAFGCPLCSTGGMGPALNSHLNVAVLPQPHAPPAAVVLAADIPARFTWPTANPRAPPALA
>CP027757.1|AZE72642.1|2706373_2708500_-|Outer-membrane-vitamin-B12-receptor-BtuB
MKHLPLLAGLIGCLPVCAPALELAPTTIEGEQSVEPGLALDQPSGMASRLGLSVRETPASVAIANRNDIERHGAKTFRDAANTLPGVNASAPPGFGGFVSYRGFTSSQITQMFNGINVATGLARPVDAWVYDRVELVGGPSSLINGAGSVGGSLNYVTKLASREEQAVEGQLTYGSYDTAGMAFGLNHALTEPGAEVQHYARLDVSRNTNHSYIDRDQRDAWSLAFSLLSDLTPDLSHTLALEYQDEHEDSPYWGTPVLNPKAGELKIDKHNRFNNYNVADGRYEQRTIWARSIIDYRINDSTTLKNTLYHLDSQRDYRNLETYQYNADNSAVNRSTAYQVRHQGQQNGNQFELRHDNRIFGLSTTWSGGFEYKVNSTTNSPLNVPGKSTVDPNNYDPGHFYDIPGTRPGFVKDKTNEVTTKALFVENRLGLTDKLSLLTGLRYDAIDMDVTNHRSVTSANPRHFKRSWEPLTGRVGLTYQFIPSANVYVQYSTAVEQPNTTTQVFDVSTGKQWEIGSKFDYLDGRGSATVAAYKIERKDFAVTDPLDPTNSIPVGAQSSKGIELASSLRITPRLLAEGNFAWVDAEYDEFNEKMASGAVVSRKGNTPTNVPRRVGNLWLTYDFSEDWQGGVDARYVAQVYADNANTQTVPAYTLFGTFLRYRLDAHTSVTGRVRNLTNEVYAEFAHVSPAYYLGSPRTFEVAVQTKF
>CP027757.1|AZE72641.1|2705244_2706252_+|putative-periplasmic-substrate-binding-protein
MKGLKSLLAASLTALSLSLPVSAAQTPVHFADLNWESGSLITEVLRFIVEKGYDLPTDTLPGTTITLETALAKNDIQVIGEEWAGRSPVWVKAEAEGKVVGLGDTVKGATEGWWVPEYVVKGDPSKNLKPLAPDLKSVKDLARYKDVFKDPESPDKGRFLNSPIGWTSEVVNKQKLKAYGLDDSYVNFRSGSGAALDAEIASSIRRGKPVLFYYWSPTPLMGRYKLIQLEEPPFDADAWKTLTDADNPDPKPTRSLASKLSIGVSTPFQQEHPQIAQFFEKVEFPIEPLNKALAKMSENHTAPREVAQAFLKEHPEVWKAWLTQDVAQKVEASLK
>CP027757.1|AZE72640.1|2704643_2705114_+|hypothetical-protein
MAVSNLDMHALFVLGDLRAKLVKQFQSRFVYVTEQTPEGIYIAEIDTETALVVDDKPRLELKVGDHFRAAVLPSREGGKFELKFRDIKLTVYGLGDYAFVSSAEGQGIVFKEGHSVMLVFAAHEQLQEGLTKTLKAVTGKAAKWRKGELVTFKASE
>CP027757.1|AZE72639.1|2703999_2704275_-|hypothetical-protein
MQRRQHDAASFHKRSSWSEERQYYCLHNADGYSNSVIYQVVPAGKNFFHILEVPSGRIKGFRSDHNKACELAKTLEAKLQALCDTLVSSPG
>CP027757.1|AZE72638.1|2703658_2703889_-|hypothetical-protein
MTEFDIGEFFIHGDAREVDGEFQAVIVMRAKPPLTTVTTHQVEKDRWFKTVDAAANAAKDAAKALKAAVDSGALTS
>CP027757.1|AZE72637.1|2703346_2703589_-|hypothetical-protein
MDTTTPTLETLFDQLGLDSSQEAIERFTAEHRLPDDVKLIDAPFWSEQQASFLKEQLHVDAEWAPAVDDLNALLHESPKE
>CP027757.1|AZE72636.1|2703141_2703345_+|hypothetical-protein
MQNKVDVAVMIGSGVPETLRALGQKACWVVLLNGEQRGTAFASRDEAEECRTAWQALLRMERSDSLH
>CP027757.1|AZE72635.1|2702537_2702942_+|DksA-family-protein
MTKEKLLAMPADDYMNAEQHAFFEKLLQDMKVEHHERIEQNRIAIESLDTPADPADAASVEEERTWLVNAIDRDQRMLPQLERALERIKEDSFGWCDDSGEPIGLKRLLISPTTKYCIEAQERHEQIDKHQRQA
>CP027757.1|AZE72645.1|2710349_2711516_+|Multidrug-efflux-system,-membrane-fusion-component-MexP
MYAKPISLITGAMAVVLTLGGCTDNAPPAAAAKPPSVPVAEVVARAVTPFVEYTGSLTAIDQVELRPRVSGYLQSVSVPEGQFVAKGSPLFVIDPRVFQAALNAAKARLREAEANAVLAQAEHGRAEQLFAKKVVARDRLDTAIASLNAGRAQVEAARAALDAAQLDLGYTRVTAPISGRIDRALVTEGNYVTQGVTALTTIVSIDPLHVYFDVDERTYLHSLAATRDHAGSKGEKAAKVMVAMLNDTTYARAGRVDFLANAADRKTGTVRVRAVVDNPDGRLAPGLFAKVKLDTGAARPRVLIADQSIGTDQGRRYVLVVGEGDKTEYRPVELGPMVDGLRVIEQGLQAGERIVVKGLVRPGMQVTPLAASIEGKPLEAPLTVGGVQ
>CP027757.1|AZE72646.1|2711512_2714689_+|Multidrug-efflux-system,-inner-membrane-proton/drug-antiporter-(RND-type)-MexQ
MSFPRFFIDRPIFAIVLSVLMMIGGIVAFFHLPLSEYPAVTPPTVQVTASYPGANPQVIAETVAAPLEQVITGVEGMLYMTSQSATDGRMILTATFAQGTNADMAQIQVQNRVSRALPRLPEEVQRLGVVTQKTSPDILMVVHLLSPDKRYDPLYISNYAYLQVRDELSRLPGINDVLVWGAGEYSMRLWLDPDLIAARGLTAGDVIAAVREQNVQVAAGSVGQAPDSSAAFQVTVNTLGRLTDEEQFGDIIIRTGDNGQVTRLRDVARIEMGADAYALRSLLDGEPAVALQIIQSPGANALDVAQAVRDTMQRLQANFPEGLVSRIAYDPTVFVRASLESVAITLMEAILLVVIVVVVFLRNWRASLIPLMAVPVSIIGTFAVMHLMGFSLNTLSLFGLVLSIGIVVDDAIVVVENVERHIENGEEPTQAARRAMGEVTGPIIAITSVLAAVFIPTAFLSGLQGEFYRQFALTIAISTILSAVNSLTLSPALAGLLLRPRGAAVVHDPRSLRGRAAHLLELLGRPFQRAPQAYGSTVRKVVGRRGVALVAYCGLLALTWFGFNAVPAGFVPMQDKYYLVGIAQLPNSASLDRTDAVVRQMSKIALDEPGVESVVAFPGLSVNGFVNVPNAAVMFVMLDPFKERTSPDMAAVAIAGRLQAKFASIPDGFLGVFPPPPVPGLGVTGGFKLQVEDRGGVGLEALVQQTQVLMTKATESGQVAGLMSSLDVNAPQLNVDIDRTQVKSQGVRLADVFESLQVYLGSLYVNDFNRFGRTYKVTAQADADHRMQAEAIGRLQVRNAAGDMLPLSAFVTVTPGSGPDRVIHYNGYPSADISGGAMPGVSSGQAVALMEHLAQEVLPEGVTYEWTDLTYQQKLAGSSALFIFPLCVLLAYLILAAQYNSWLLPLAVLLIVPMCLLSAIIGVWLVDGDNNVFVQIGLVVLVGLAAKNAILIVEFARSLEAEGASPLEAVIHACQLRLRPILMTSLAFIAGVVPLVFASGAGAEMRHAMGVAVFAGMLGVTLFGLFLTPVFYVVMRSLALRVERQGSSPKLQLEERAS
>CP027757.1|AZE72647.1|2714685_2716137_+|Multidrug-efflux-system,-outer-membrane-factor-lipoprotein-OpmE
MRLSYPVLLLPLLLMAGCASVGPDYSAPVLPAAQRPASFGAPVAGLGTGEVEAQWWQVFDEPALSQLIQQALAANHDIGIAAARLDEAKAMLRESRQGFLPSGGAALGYEHRRRSEVETPYGEQRSTETTRAALDAAWEIDLFGRVRRSVEVAQAQAGSRQALLRSVQASVAATVAATWFELQGIEAEQAVVADISQSQRDSLGLVEHLVSVGAATEFDRLRAEALLRNVEAVAPDLERRRATSTNALAVLLGQAPQGFKPPQARPGRESLSLRTLQVGDPAGLLARRADIAAAERTLAAETAQIGVETAGLYPDIQVQGSIGLLAGSLGSLGDAGMQSNFIAPVIRWSLLDTGRVRARIAASEARTQAALIAYDQTVLRALQETDDAFQANSAAGSTLGLRLLEAAANREAARFARTRFAEGEGMYLDVLEAERADFTSRRALTAARTQQRLAVVGIYKALGGGWQICEQAGQACSGAAALR
>CP027757.1|AZE72648.1|2716243_2717095_+|hypothetical-protein
MDTKKVLTVGLAVLGAATMPSMAAQESIKGTFALPGESERAVGALIVKETGPLTRELSIAFTDKATGQPIVQFDEELTQRLHVLATDSRFTSFIHEHAAKLGADGRFKVAMKFPRPGTYYVYADAVPSGLGQQVVRFEVPVQGGTDAAAHAPAEQKQGSDGPYTVKLDTSALRAGSESMMSLTVLKDGKPAQDLDTYLGVAAHAVFVSTDELDYVHAHAMAAPMPGQAPHGGHGGHGDAGAVSAQLMLHAKPAHAGPYALWIQFKGGDTIRTVPFRVTVPAAS
>CP027757.1|AZE72649.1|2717281_2718277_+|3-oxoacyl-ACP-synthase
MDTAALQQRPDSDLFTTASTLMVNALEPGAHYAQVTRALEALLALTRQGLSGDADAYAHYQAALLQLHIPGDPRTEPTRRWMASEVYRVEDEFAADLPGFTALPVDEFRQLVDAEIAARSRVNHPMSVHLFQGTPPVQDVRFFLEHHWTRSYNFYSLLAELAFRFEAIEDASVFYRNLYGEAGAETPQRSHPAMLAHLMEYFDIPLAIDFPALHPLEKAYLNNRIRCVRHTDVAWGLALLYAVESVSCVNHRRIYELLQRLDVPEQPSEFHRLHGTQDEIDTEEMWALIAKFAGDEGFQRTFMRALKRHFEINKAYFDSLWQQMQAQRLPA
>CP027757.1|AZE72650.1|2718317_2719304_+|3-oxoacyl-ACP-synthase
MSPRNFSQPQLQNIHTAEARLLAEALKPDATFNRIEIAANMLRALCESGQRGDAANAAQCQQLLYILSLSDDVATASTRRWLANAIYSVQERFMPSADLASPLSEAAFQQRLEEQIAAQSRENHPMSQYVFEGKASREQLQVFLRHQWFRTYRLYRDAADLLVNLTDVDEAAALGRYLYGELGEEDEQRSHPRLLAKLLAAIGLTADFEAISTMPEEIAYLNNRARCFRNPDVGWGLAVFYITELVVPGNHGKLYNALRNAGLSQDDAEYYEVHISLVPPRAKREWALIARRIPDLGFQNAFLTSLAEHFRLERAYYDAVWEAMQRVK
>CP027757.1|AZE72651.1|2719334_2720753_+|hypothetical-protein
MPSHITESRIHGGAYSSPEFAAIFSDTSQVQKWLDVETALAATQAQMGIIPHEAAREIARVASVELLDLDALGRQSMETGHILVPTLRALEALCADGWGEYVHYGVTTQDILDTGLILQVRDAWGLVLQRLHAIRGHLLTLALRHKHTPMVARTHGQQALPTTFGYKVAVWVDEIDRHLERFDEAYARVMVGNLTGAVGTLAALGPQGLEVQRRTLESLGLGAPLSSWHSARDRILEAAWLLVQASATLGRVANEIYHLQRTEIDEVREGRRPGQVGSSTMPHKQNPSTVDLISALSRLVRAQMLALTDAAFQLHERDGTTWRIEWAALPELFIYAGALLARMEGVLLAGLDVRETRMRSNLDMLGGLILSERIMLALAPRFGKQTAHQLVHEIAQQAQVEGRPFREALLSDSRLHGCFSRQVLDDLLDPAAYTGLAADMVDLVANKAIPRLEGLVETQGNTGQSQYAMEGM
>CP027757.1|AZE72652.1|2720752_2722201_+|hypothetical-protein
MDAQTLEMAARASCTARSEHPGLGHDGEQCRHEHSHILDSKTHGSGYAGPQSRKIFCSHCRLQRWLDVEAALAMAQADVNIIPREAALDIEKAALLSGINVRQLADGVAATGHSLMPLLSALQKNCSPSAREYVHYGATTQDIQDTAQSLEMRDVLDAMDQALETLLGKLSTLADAHRDSLMVARTHSIPALPTTFGLKVAGWIDELLRHRQRLAEARQRVLVVQLFGGVGTMAAFGPEAIPMLERFAERLSLQVPLTGWHVSRDRVAEFVSTLAMVTASLARVADEIRTLNRWEIAEVEVGWSDQQIGSSTMPHKRNPEGCEQVVVLARLAKAQVMLALDAMILEHERDYRGTRLEWCAVADVSHYALMALSILTDTIDGLTVNVQKMECTAHAYGDAICTEAVVFEMARKLGKSSAYEIIFEVSQASQRNHVSIRTAIEADARVVAAMDTGALARLFEPRTHLGMSDRIVDNVLSKLAAR
>CP027757.1|AZE72653.1|2722238_2723312_+|SAM-dependent-methyltransferase
MSNVTAVDKAKVQQFSARIMEDYGNTLRGAMLYIGDQLGLFKALADGEAVTLEELAQKTGYNARYLREWLGSMVTGSYVTYDAPTRRYQMPAEFVPVLADEDSPYFAGGIIQLSVPFVSMAPKVIEAFRNGGGCAEEAFPLETWKGMERMTMPWYKHYLVQHWIPSLDGVEEKLKTGGSVLDFGCGAGLAAITMAKAYPEARIVGCDFHLPSIELARANAEAAGVGDRVQFEVNDSDALRGQQFDFVTTFVVIHDATDPQQMLKDLRAATAADGTYLMVELNLSEELHENMNLFGRVMYPQSTLYCMTCSLSHGGAGLGAFMGEKRARQMAQAAGFSHFRKVPSEWPPMPALFELKP
>CP027757.1|AZE72654.1|2723432_2723762_+|Valyl-tRNA-synthetase
MRTVGMMLIACSLAGGATAVQARELREGDKYMCSWGAGTAARAQELKLSGVSLYAARQKIQSIKFSKSWMHMMAMGITEQTYDSRSRLKPEAIRKSFYQDCLRYKVARK

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Crispr_ID: CP027757_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027757_2

5009946-5010045

Orphan

Consensus_repeat	Method
CAGGCCGCCATCGGGAGCAAGCCCCCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027757_2

>merge|CP027757|2|5009946-5010045|CRISPRCasFinder
CAGGCCGCCATCGGGAGCAAGCCCCCTCCCACATTGGGACCGAGGGGCGTCAGGTAGATAGGCGTCGGCTGTCAGGCCGCCAGCGGGAGCAAGCCCCCTC

>CP027757|2|2|5009946-5010045|CRISPRCasFinder
CAGGCCGCCATCGGGAGCAAGCCCCCTC	CCACATTGGGACCGAGGGGCGTCAGGTAGATAGGCGTCGGCTGT
CAGGCCGCCAGCGGGAGCAAGCCCCCTC

Protein	Signature genes	Signature genes Name	Protein_function
CP027757.1\|AZE74764.1\|5017062_5018778_+\|Prolyl-tRNA-synthetase,-bacterial-type	unknown	unknown	gnl\|CDD\|236405
CP027757.1\|AZE74758.1\|5011849_5012143_-\|Heat-shock-protein-60-family-co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
CP027757.1\|AZE74747.1\|4999103_5000543_+\|putative-thiol-oxidoreductase	unknown	unknown	gnl\|CDD\|226019
CP027757.1\|AZE74762.1\|5014932_5015286_+\|DNA-base-flipping-protein	unknown	unknown	gnl\|CDD\|226219
CP027757.1\|AZE74750.1\|5002911_5003139_-\|hypothetical-protein	unknown	unknown	unknown
CP027757.1\|AZE74749.1\|5001638_5002739_+\|putative-exported-protein	unknown	unknown	gnl\|CDD\|226021
CP027757.1\|AZE74752.1\|5003859_5004540_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
CP027757.1\|AZE74765.1\|5018798_5019752_+\|putative-lipoprotein	unknown	unknown	unknown
CP027757.1\|AZE74751.1\|5003135_5003855_-\|InaA-protein	unknown	unknown	gnl\|CDD\|182136
CP027757.1\|AZE74757.1\|5010153_5011800_-\|Heat-shock-protein-60-family-chaperone-GroEL	unknown	unknown	gnl\|CDD\|234573
CP027757.1\|AZE74763.1\|5015329_5016862_+\|AmpG-permease	unknown	unknown	gnl\|CDD\|341039
CP027757.1\|AZE74754.1\|5005998_5006682_-\|Two-component-transcriptional-response-regulator,-LuxR-family	unknown	unknown	gnl\|CDD\|223816
CP027757.1\|AZE74755.1\|5006882_5008832_+\|Putative-sulfatase	unknown	unknown	gnl\|CDD\|293739
CP027757.1\|AZE74748.1\|5000574_5001639_+\|Iron-regulated-protein-A-precursor	unknown	unknown	gnl\|CDD\|226020
CP027757.1\|AZE74759.1\|5012390_5012867_-\|protein-FxsA	unknown	unknown	gnl\|CDD\|236913
CP027757.1\|AZE74756.1\|5008882_5009608_+\|putative-membrane-protein	unknown	unknown	gnl\|CDD\|226422
CP027757.1\|AZE74766.1\|5019881_5020979_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
CP027757.1\|AZE74760.1\|5012933_5013665_-\|Putative-heme-iron-utilization-protein	unknown	unknown	gnl\|CDD\|223819
CP027757.1\|AZE74753.1\|5004728_5006009_-\|Two-component-system-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP027757.1\|AZE74761.1\|5013768_5014776_-\|Peptide-chain-release-factor-RF-3	unknown	unknown	gnl\|CDD\|377313

Protein	Function_ID	Function_description	E-value
CP027757.1\|AZE74764.1\|5017062_5018778_+\|Prolyl-tRNA-synthetase,-bacterial-type	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
CP027757.1\|AZE74747.1\|4999103_5000543_+\|putative-thiol-oxidoreductase	gnl\|CDD\|226019	COG3488, COG3488, Predicted thiol oxidoreductase [Energy production and conversion].	0
CP027757.1\|AZE74762.1\|5014932_5015286_+\|DNA-base-flipping-protein	gnl\|CDD\|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	1.39132e-35
CP027757.1\|AZE74754.1\|5005998_5006682_-\|Two-component-transcriptional-response-regulator,-LuxR-family	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.47067e-75
CP027757.1\|AZE74749.1\|5001638_5002739_+\|putative-exported-protein	gnl\|CDD\|226021	COG3490, COG3490, Uncharacterized protein conserved in bacteria [Function unknown].	9.71218e-150
CP027757.1\|AZE74752.1\|5003859_5004540_-\|SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.00814e-17
CP027757.1\|AZE74751.1\|5003135_5003855_-\|InaA-protein	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	6.3494e-51
CP027757.1\|AZE74757.1\|5010153_5011800_-\|Heat-shock-protein-60-family-chaperone-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
CP027757.1\|AZE74763.1\|5015329_5016862_+\|AmpG-permease	gnl\|CDD\|341039	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily. AmpG acts as an inner membrane permease in the beta-lactamase induction system and in peptidoglycan recycling. It transports meuropeptide from the periplasm into the cytosol in gram-negative bacteria, which is essential for the induction of the ampC encoding beta-lactamase. The AmpG family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.5459e-52
CP027757.1\|AZE74756.1\|5008882_5009608_+\|putative-membrane-protein	gnl\|CDD\|226422	COG3907, COG3907, PAP2 (acid phosphatase) superfamily protein [General function prediction only].	3.71714e-70
CP027757.1\|AZE74755.1\|5006882_5008832_+\|Putative-sulfatase	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	7.97949e-82
CP027757.1\|AZE74748.1\|5000574_5001639_+\|Iron-regulated-protein-A-precursor	gnl\|CDD\|226020	COG3489, COG3489, Predicted periplasmic lipoprotein [General function prediction only].	9.54645e-119
CP027757.1\|AZE74759.1\|5012390_5012867_-\|protein-FxsA	gnl\|CDD\|236913	PRK11463, fxsA, phage T7 F exclusion suppressor FxsA; Reviewed.	6.7145e-46
CP027757.1\|AZE74758.1\|5011849_5012143_-\|Heat-shock-protein-60-family-co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	4.57515e-47
CP027757.1\|AZE74766.1\|5019881_5020979_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
CP027757.1\|AZE74760.1\|5012933_5013665_-\|Putative-heme-iron-utilization-protein	gnl\|CDD\|223819	COG0748, HugZ, Putative heme iron utilization protein [Inorganic ion transport and metabolism].	1.33176e-63
CP027757.1\|AZE74753.1\|5004728_5006009_-\|Two-component-system-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.83223e-46
CP027757.1\|AZE74761.1\|5013768_5014776_-\|Peptide-chain-release-factor-RF-3	gnl\|CDD\|377313	pfam04338, DUF481, Protein of unknown function, DUF481. This family includes several proteins of uncharacterized function.	1.87177e-53

>CP027757.1|AZE74756.1|5008882_5009608_+|putative-membrane-protein
MKSPSSLPVSKPLNFWLCLGLPAGAAVVLLLLELTSLDMDLARRFYSAEAGGFIGRYSFLLEDILHDRAKQLVILFSVLAILGLVGSFILQRLKPYRRELVCLVLSLGMATAFVSPLKTITAVQCPWSLKEFGGQETYSELLSPRPPTDKPGRCWPGGHAATGFALFAWFFALRDRRPRLARNAFIFAVSLGSVFSVSRMLQGAHFFSHNVWTAIFCWLICLDLYCLLLYRPSRQAVMPIS
>CP027757.1|AZE74755.1|5006882_5008832_+|Putative-sulfatase
MGFLKTAPMRYLLLITGAWLLVFLLTRSVLLVTHLNEVGGNWLPVFGVGMLYDLAFLAYAALPLGLYLLLCPPALWRRRGHRWFLQVLLTASLFAMLFTSVAEWLFWDEFGVRFNFIAVDYLVYSDEVLNNLLESYPIGKLLSLLAMLAILMSLALRKPFNAAMAVPLPALRSRLLNGLGLLVVAGLSLQLISQDSPRAQGGNAYKNELASNGPYQFFAAFRNNELDYTQFYKSLPADVVARQLRAELSEPNARFVDQDPLDIRRAIDNPGTLRKPNIVLVTIESFSAKYMGSNGDQRNLTPNLDALRKQSLYFNNFYATGTRTDRGLEAITLAIPPTPGRSIVKRIGRESGFASLGQQLTAIGYDSVFVYGGRGYFDNMNAFFSGNGYRVVDQSSVPESDISFKNAWGMADEDLFKQTLTLADADYAKQQPFLLQLMTTSNHRPYTYPDGRIDIKSGKGRDGAVKYTDYAIGQFLEAARQKPWFDNTIFVFVADHTAGSAGKEDLPITNYQIPLFVYAPKLIDPRESAQLASQIDLAPTLLGLINLSYESTFFGRNLLQDNPLPPRVVIGNYQHLGLFDGKDLAILSPRQGLRRHDQALGESQELRVGSDDPLIQRAITYYQAASYDYKQQLLSWKALKEEAPVLSKR
>CP027757.1|AZE74754.1|5005998_5006682_-|Two-component-transcriptional-response-regulator,-LuxR-family
MRILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYTLCKRLREDARRDTPVIMLTARDQLDDRLQGFKSGADDYLLKPFALSELAARIEAVLRRAQGGGRRALQVGDLNYDLDTLEVTREGRLLKLNPVGLKLLAVLMQKSPHVLRREILEEALWGDDCPDSDSLRSHVHQLRQVIDKPFAKPLLQTVHGVGYRLAEGRDGV
>CP027757.1|AZE74753.1|5004728_5006009_-|Two-component-system-sensor-histidine-kinase
MEFKQSLAQRIIIAFALMSALVAGAFAMGIVATVHLVEEKLISAGLGGDLQRLLLMDSMEDWRHRPEPDQLFYFSGGRGDFELPKDLRHLEPGFHEVFRESLSYHAMVEVIDGRRYVLLQDQSDFEERERVLFAVVLVGFVLSLALAVFLGWVLARKVMAPVVRLARQVRHRDQLLGLAPPLAPDYAADEVGELAVAFDATLGRLRQALSREQLFTSDVSHELRTPLMVLASSCELLLENPAIDERGRRQVERIARACEEMRELVQTFLMLARAKHDDAASSPQGSLTQVAEDLLGIWREPIEKKGLELIYRPGNPLDTRYNTTFLHAVMGNLLRNALHYTEHGFIRLTLEPSGFVVEDTGVGIPEEKREAMFEPFVRGSENRGEGLGLGLSLVQRICESQGWNVSLSTMEPNGCRFHVELSQVKS
>CP027757.1|AZE74752.1|5003859_5004540_-|SAM-dependent-methyltransferase
MPSPIKLEFSEKYDDQHAQQYLLKHQDNLARRLSHKRDEQLARGALAMAGEPGLVLDLPCGAGRFWPLLAEKPNRVIIGADNSASMLKIATTAQPADVVKRVRPLQTSAFDIDLPDNSVDSIFCMRLMHHIGEPEHRLTILREFQRVTRDSVIISLWVDGNFKAWKRKRSEVRRRKRGEQEGYQNRFVLPAATVEAEFEQAGFRVQESLDFIPLYAMWRVYVLRKR
>CP027757.1|AZE74751.1|5003135_5003855_-|InaA-protein
MAVECVAGSHVAPEERFDFFWRQQGEWVEEPNRRRGGESGVQRVVGPNGRLLYSKRQTGHIYRSWLHPFGRPTVLRERDALKGLRLLDVRVPELVFCEARRDPEHQWKALLVTASLDGFDEIENWYAAGGREQYGEAVHERLLQELAGTLARMHKGRWQHGCLYIKHIFVRVTGEPEAATVEVALLDFEKCRQRLTAYRAASHDMLQLRRHSSWNDTDWKKLSYFYETAFGSAIKGLTR
>CP027757.1|AZE74750.1|5002911_5003139_-|hypothetical-protein
MKLEIARGLFLVGALGVSALALAVWEQPRTQVLSAVDGGGQCLLPRIAKASVAAKPDHELLLFMFGMSQAMKPQS
>CP027757.1|AZE74749.1|5001638_5002739_+|putative-exported-protein
MMLRRQALAVGSVLLSALTLGGWTLFKGKDKGPLLLSARDDADGKHYAVGYRLDGKQVFATQVGQRCHDIINHPTLPIALFVARRPGTESYLIDLRDGALLQTISSNANRHFYGHAVIHKSGDWLYATENDTSDPGRGLLGVYKFEGERLVHSGEISTHGIGPHQVSWMPDGETLVVANGGIRTEAESRVEMNLNAMEPSLVLMRRDGTLISKETLGQQMNSVRHMGIANDGTILTGQQFMGPSQERSELLAIKRPGQPFVAFPVADEQLQAMGHYTASVAVHSELRLVALTAPRGNRFFIWDMDSAELRLDGPLPDCAGVGAVADGFVVTSGQGRCRFYDCRQTTLMAKPLELPAGFWDNHLHLI
>CP027757.1|AZE74748.1|5000574_5001639_+|Iron-regulated-protein-A-precursor
MFRPKLLFTSLAALALGACSPQDPQAVTSAAIAKQVILPTYSRWVEADRQLAVSALAYCQGKESLDTARADFLHAQKAWAELQPLLIGPLAEGNRAWQVQFWPDKKNLVGRQVEQLVSAQPQIDAAALAKSSVVVQGLSAYEYILYDAKPDVADQAQKARYCPLLMAIGERQKVLAEEILASWNSTDGMLAQMTKFPNQRYADSHEAIADLLRVQVTALDTLKKKLGTPMGRQTKGIPQPFQADAWRSQSSLQSLEASLAAAQTVWVGVDNKGLRGLLPADQKPLAEKIDAAYAASLKLFASNQRSLNELLNDDAGRQQLNDIYDSLNVVHRLHEGELAKALGIQLGFNANDGD
>CP027757.1|AZE74747.1|4999103_5000543_+|putative-thiol-oxidoreductase
MFRALFCLSAALMALSLTACDNAPRFTKAEPGESRSGGATTVNKRDQNAFSLPSANLAPTRRLDFSVGNSFFRSPWVIAPSTTTARDGLGPLFNTNACQNCHIKDGRGHPPLPDAPNAVSMLVRLSIPLSITEQPPYAELIEQLGVVPEPVYGGQLQDMSVPGVVPEGKVRVDYSPVQVSFKDGTVVELRKPDLQITQLGYGPMHPDTRFSARVAPPMIGLGLLEAISDADILRNTDPKTADKDAIVGHANWVWDEAQHKTVLGRFGWKAGQPNLNQQNVHAFSGDMGLTTSLRPFDDCTDAQVACKQAPNGNGPDGEPEVSDNILRLVLFYTRNLAVPARRDVNTPQVLAGKNLFYQAGCQGCHKPTFTTAANAAEPELANQVIRPYSDLLLHDMGEGLADNRTEFKASGRDWRTPPLWGIGLTQAVSGHTQFLHDGRARNLLEAVLWHGGEAQAAQQHVLSFNAEQRAALLAFLNSL
>CP027757.1|AZE74757.1|5010153_5011800_-|Heat-shock-protein-60-family-chaperone-GroEL
MAAKEVKFGDSARKKMLTGVNVLADAVKATLGPKGRNVIIEKSFGAPTITKDGVSVAKEIELEDRFENMGAQLVKDVASRANDDAGDGTTTATVLAQAIVNEGYKAVAAGMNPMDLKRGIDKATIAVVAELKNLSKPCADTKAIAQVGTISANSDSSIGDIIAEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPETMVAELDNPLILLVDKKISNIREMLPVLEAVAKAGRPLLIVSEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGTVISEEIGLSLESATLENLGSAKRVTISKENTIIVDGAGVEGDIESRIAQIRAQVAETSSDYDREKLQERLAKLSGGVAVIKVGAGSEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALIRALEALTNLTGDNADQNVGIAVLRRAVEAPLRQIAANSGDEPSVVVNEVKNGKGNYGYNAATGIYGDMIEMGILDPTKVTRSALQAAASIGGLILTTEAAIADKPKAEGAAGGGMPDMGGMGGMGGMM
>CP027757.1|AZE74758.1|5011849_5012143_-|Heat-shock-protein-60-family-co-chaperone-GroES
MKLRPLHDRVVIRRSEEEKKTAGGIVLPGSAAEKANHGVILAAGPGKALENGEVRALAVKVGDKVVFGPYSGSNTVKIDGEDLLVMSESEILAVLED
>CP027757.1|AZE74759.1|5012390_5012867_-|protein-FxsA
MRPFLLLFLLFPVLELFVFVQVSGAIGFFPALLLIIAGSMLGVLVLRVAGLATALRARESLNRGELPAQTMLEGLMMALAGGLLILPGFVSDVLGLVLLLPFTRKLLAGKMRQRAEEAAIRQRAFADDLQPRGGPAPRQPLGREGDVIEGEFEHRDSK
>CP027757.1|AZE74760.1|5012933_5013665_-|Putative-heme-iron-utilization-protein
MSAHVAKNARELLLKEYRGALSTLSKAMPGFPFGSVVPYCLDEQGRPLILISRIAQHTHNLQKDPKCSLLVGERGADDVQAVGRLTYLAEAEKLEDEAAIEAAAERYYRYFPDSANYHKAHDFDFWVLKPVRHRYIGGFGAIHWVDQLTLANPFAGKAERSMIEHMNSDHTKAIAHYVELSGLPTSEPAQLAGIDSEGMHLRIGQSLHWLPFATPCNTPTQVREALVSLAHAEAWPKITAVNA
>CP027757.1|AZE74761.1|5013768_5014776_-|Peptide-chain-release-factor-RF-3
MLSRTLLCLAVFSASTPLLADTVWLKNGDRLTGKIKVFDGGKLLIQTTYAGSIPVDWKQVKTLESDQELLVKQDAYSGEKAKSLHASDDGKVVLANGEAPKTVELASIQQIMKPKPVIEDLVWKGNVDLALDYKRADKDTNDYDVDFKTSARHGQWRHTGKGEYNREFQDDVTTTDNWALEYNLDRFITEHWFWQGRLTYKRDKVEDLARQRVVGTGPGYQFWDDELGAFSLGSLVNRTDYEYADGGKDNFYSLAMKWNYNRYLVGKTVEFFTNGELGKPLAGPAEYSLDAEMGLRYKVTEWASLNLKAERNEVSGNSDSSLSKTRYTAGFGVAW
>CP027757.1|AZE74762.1|5014932_5015286_+|DNA-base-flipping-protein
MNLPADTPQSPADMRRTALYLTLAQVPEGCVVSYGELARLAGLGRAARWVGRTLSQLPEDTRLPWHRVLGAGGRISLPVGSASGDEQRARLRSEGVTILNNRVDIQRHGWRPVEHSG
>CP027757.1|AZE74763.1|5015329_5016862_+|AmpG-permease
MPRKTWRAALAAYASPSTLVLLLLGFAAGMPYMLVFSTLSVWLREAGVARETIGYASLIGLAYAFKWVWSPLLDQWRLPFLGKLGRRRSWLVLAQSLVILGLIGMGFCDPQKHLSWLIAIAVVVAFASATQDIAVDAYRLEIADDSRQAALAASYMSGYRIAALLATAGALFFAEGFGSTGFNYKHSAWTGTYVLFGVLMVPALLTTLLMREPDVPLRTQLQAGRYSFVHQLVSVFVLIVLLVSVPAMFTQLYNTDFASVLFQGVSLWELLMEDRAFLRAILYITLTSLCLSAMGRRGLAPVLTPVNDFILRYRWQALLLLGLIATYRMSDTVMGVMANVFYIDQGFTKDQIAGVSKIFGLIMTLVGAGMGGLLIVRFGILPILFIGGVASAGTNLLFVMLADMGPDLQMLIVTISLDNFSSGLATSAFVAYLSSLTNLKFSATQYALLSSIMLLLPRLIGGYSGVMVEKFGYHNFFMITCLLGLPTLFLIALHWFQENRRIRLNPPTED
>CP027757.1|AZE74764.1|5017062_5018778_+|Prolyl-tRNA-synthetase,-bacterial-type
MRTSQYLLATQKETPSDAVVISHQLMLRAGMIRKLASGLYTWLPMGLKVMRKVEAIVREEMNAAGSLEVLMPSTQPAELWQESGRWEEYGPELLRFKDRHGRDFCAGPTHEEVITDLMRNELSSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADLASLQVTYDRMHQAYCNVFTRLGLKFRPVEADNGSIGGAGSHEFHVLAESGEDDIVFSNGSDYAANIEKAEAVPRETSRPAPTEELRLVDTPDTKTIAALVEKFNLPIEKTIKTLIVHAEEEGKLIALVIRGDHELNEIKAANQPGVASPLVMASDAELRDAIGAGAGSLGPLNLPLPIIIDRSVELMSDFGIGANIDDKHYFGVNWERDLPVPTVADLRNVVAGDPSPDGKGTLEIKRGIEVGHIFQLGNKYSKAMKCEVLGENGKPITLEMGCYGIGVSRVVAAAIEQNNDEKGIIWSDALAPFQVALVPLRYETEQVREATDKLYAELTAAGFEVLLDDRDKKTSPGIKFADMELIGIPHRIVVSDRGLADGNLEYKSRTESEAQPLPVADVLSFLQARIRR
>CP027757.1|AZE74765.1|5018798_5019752_+|putative-lipoprotein
MFKPHTRALGGAALCGALLVSGCANQMSQRSEHEERIERKLLDHSLQIDVGEPKVLELPQRRVRIHEQKTFEVTEFEVTRRYDRYTPYQPWRKLYEMPLGAVALVAGVGANVANIFALGNLPTSVTRDWLSYGVDGINPFMNVQSHGRAQQNLAAIDEVQRDKRLEYSSLPWSERPVQVTAGKQTHELTTDRNGILRLNLLDSPFAEQDLNRVTTLKISVEDGQDDVHTDSTLAVSNSLRGKLLEAHGLIYDDLEDDEVNQWVHRVKRLSELGLEEEASELEQSLIELTRNDPELQQEFLQALTKDAGRLVADPGAR
>CP027757.1|AZE74766.1|5019881_5020979_-|DNA-polymerase-IV
MRYCPPVGSHPVYMTQRKIIHVDCDCFYAAIEMRDDPSLAQKPLAVGGSADRRGVIATCNYEARAYGVRSAMSSRHALKLCPDLTIVKPRMDAYKEASKEIQTIFRDYTDLIEPLSLDEAYLDVSDSPHFGGSATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEDFVSQLRVSKLHGVGKVTADKLARLGIEDCLQLREWNKLALVREFGSFGERLWSLARGIDDRVVQNDSRRQSISVENTYDVDLPDLSSCLAKLPELMETLAGRMARIDSSYRAGKPFVKVKFHDFTQTTLEQAGAGRDLESYQQLLTQAFNRGGKPVRLLGIGVRLLDLSGGNEQLEFSW

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Crispr_ID: CP027757_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027757_3

5226510-5226620

Orphan

Consensus_repeat	Method
GGGGTGCGCTCTAACCAACTGAGCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027757_3

>merge|CP027757|3|5226510-5226620|CRISPRCasFinder
GGGGTGCGCTCTAACCAACTGAGCTACAGACCCAATTTCGAGCTGCTAAGGCCGACCTCACCCTGCTCTTTACCACAGAGCATGGGGTGCGCTCTAACCAACTAAGCTACA

>CP027757|3|3|5226510-5226620|CRISPRCasFinder
GGGGTGCGCTCTAACCAACTGAGCTACA	GACCCAATTTCGAGCTGCTAAGGCCGACCTCACCCTGCTCTTTACCACAGAGCAT
GGGGTGCGCTCTAACCAACTAAGCTACA

Protein	Signature genes	Signature genes Name	Protein_function
CP027757.1\|AZE74948.1\|5230425_5231283_-\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|224104
CP027757.1\|AZE74950.1\|5232492_5232984_-\|Acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
CP027757.1\|AZE74945.1\|5219333_5222786_-\|Exodeoxyribonuclease-V-gamma-chain	unknown	unknown	gnl\|CDD\|273633
CP027757.1\|AZE74943.1\|5213599_5215669_-\|Exodeoxyribonuclease-V-alpha-chain	unknown	unknown	gnl\|CDD\|273631
CP027757.1\|AZE74937.1\|5207352_5208240_-\|3-hydroxyisobutyrate-dehydrogenase	unknown	unknown	gnl\|CDD\|130753
CP027757.1\|AZE74949.1\|5231428_5232445_-\|Ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
CP027757.1\|AZE74951.1\|5232986_5234711_-\|Acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|180578
CP027757.1\|AZE74939.1\|5209864_5210854_+\|Transcriptional-regulator,-LysR-family	unknown	unknown	gnl\|CDD\|223656
CP027757.1\|AZE74944.1\|5215665_5219337_-\|Exodeoxyribonuclease-V-beta-chain	unknown	unknown	gnl\|CDD\|236784
CP027757.1\|AZE74942.1\|5212889_5213456_-\|Uncharacterized-protein-YfiR	unknown	unknown	gnl\|CDD\|379335
CP027757.1\|AZE74952.1\|5235142_5235472_-\|Uncharacterized-protein-YqcC	unknown	unknown	gnl\|CDD\|377282
CP027757.1\|AZE74940.1\|5211133_5211625_-\|Integral-membrane-protein-YfiB	unknown	unknown	gnl\|CDD\|182172
CP027757.1\|AZE74938.1\|5208255_5209773_-\|Methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
CP027757.1\|AZE74941.1\|5211630_5212893_-\|Inner-membrane-protein-YfiN	unknown	unknown	gnl\|CDD\|182171
CP027757.1\|AZE74936.1\|5206960_5207305_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225981
CP027757.1\|AZE74955.1\|5238665_5240222_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225098
CP027757.1\|AZE74947.1\|5229348_5230362_-\|Sulfoxide-reductase-catalytic-subunit-YedY	unknown	unknown	gnl\|CDD\|235431
CP027757.1\|AZE74954.1\|5236222_5238547_-\|Multimodular-transpeptidase-transglycosylase	unknown	unknown	gnl\|CDD\|273952
CP027757.1\|AZE74946.1\|5228728_5229349_-\|Sulfoxide-reductase-heme-binding-subunit-YedZ	unknown	unknown	gnl\|CDD\|235452
CP027757.1\|AZE74953.1\|5235471_5236206_-\|TPR-domain-protein	unknown	unknown	gnl\|CDD\|276809

Protein	Function_ID	Function_description	E-value
CP027757.1\|AZE74948.1\|5230425_5231283_-\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	gnl\|CDD\|224104	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].	1.62544e-65
CP027757.1\|AZE74950.1\|5232492_5232984_-\|Acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	5.80396e-92
CP027757.1\|AZE74945.1\|5219333_5222786_-\|Exodeoxyribonuclease-V-gamma-chain	gnl\|CDD\|273633	TIGR01450, recC, exodeoxyribonuclease V, gamma subunit. This model describes the gamma subunit of exodeoxyribonuclease V. Species containing this protein should also have the alpha (TIGR01447) and beta (TIGR00609) subunits. Candidates from Borrelia and from the Chlamydias differ dramatically and score between trusted and noise cutoffs. [DNA metabolism, DNA replication, recombination, and repair].	0
CP027757.1\|AZE74943.1\|5213599_5215669_-\|Exodeoxyribonuclease-V-alpha-chain	gnl\|CDD\|273631	TIGR01447, recD, exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. [DNA metabolism, DNA replication, recombination, and repair].	0
CP027757.1\|AZE74937.1\|5207352_5208240_-\|3-hydroxyisobutyrate-dehydrogenase	gnl\|CDD\|130753	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase. 3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). [Energy metabolism, Amino acids and amines].	1.30242e-138
CP027757.1\|AZE74949.1\|5231428_5232445_-\|Ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
CP027757.1\|AZE74951.1\|5232986_5234711_-\|Acetolactate-synthase-large-subunit	gnl\|CDD\|180578	PRK06466, PRK06466, acetolactate synthase 3 large subunit.	0
CP027757.1\|AZE74939.1\|5209864_5210854_+\|Transcriptional-regulator,-LysR-family	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.45086e-34
CP027757.1\|AZE74944.1\|5215665_5219337_-\|Exodeoxyribonuclease-V-beta-chain	gnl\|CDD\|236784	PRK10876, recB, exonuclease V subunit beta; Provisional.	0
CP027757.1\|AZE74942.1\|5212889_5213456_-\|Uncharacterized-protein-YfiR	gnl\|CDD\|379335	pfam13689, DUF4154, Domain of unknown function (DUF4154). This family of proteins is found in bacteria. Proteins in this family are typically between 172 and 207 amino acids in length. Many members are annotated as valyl-tRNA synthetase but this could not be confirmed.	1.53485e-39
CP027757.1\|AZE74952.1\|5235142_5235472_-\|Uncharacterized-protein-YqcC	gnl\|CDD\|377282	pfam04287, DUF446, tRNA pseudouridine synthase C. This family is suggested to be the catalytic domain of tRNA pseudouridine synthase C by association. The structure has been solved for one member, as Structure 2HGK, which by inference is designated in this way.	9.11584e-40
CP027757.1\|AZE74940.1\|5211133_5211625_-\|Integral-membrane-protein-YfiB	gnl\|CDD\|182172	PRK09967, PRK09967, OmpA family protein.	1.90555e-37
CP027757.1\|AZE74938.1\|5208255_5209773_-\|Methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
CP027757.1\|AZE74941.1\|5211630_5212893_-\|Inner-membrane-protein-YfiN	gnl\|CDD\|182171	PRK09966, PRK09966, diguanylate cyclase DgcN.	3.46389e-82
CP027757.1\|AZE74936.1\|5206960_5207305_+\|hypothetical-protein	gnl\|CDD\|225981	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only].	1.90361e-38
CP027757.1\|AZE74955.1\|5238665_5240222_+\|hypothetical-protein	gnl\|CDD\|225098	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown].	6.84786e-151
CP027757.1\|AZE74947.1\|5229348_5230362_-\|Sulfoxide-reductase-catalytic-subunit-YedY	gnl\|CDD\|235431	PRK05363, PRK05363, protein-methionine-sulfoxide reductase catalytic subunit MsrP.	0
CP027757.1\|AZE74954.1\|5236222_5238547_-\|Multimodular-transpeptidase-transglycosylase	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
CP027757.1\|AZE74946.1\|5228728_5229349_-\|Sulfoxide-reductase-heme-binding-subunit-YedZ	gnl\|CDD\|235452	PRK05419, PRK05419, protein-methionine-sulfoxide reductase heme-binding subunit MsrQ.	2.49507e-74
CP027757.1\|AZE74953.1\|5235471_5236206_-\|TPR-domain-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.44236e-08

>CP027757.1|AZE74945.1|5219333_5222786_-|Exodeoxyribonuclease-V-gamma-chain
MPDATSLSAGFMVVHGNRLDELRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAEDPEEDDMGGCGIAAAIDVQLPGSFMWQLYRMVLGRDEIPPKSLLDKAPLTWRLMRLLPELIDQPHFEPLQRFLTQDTDLRKRYQLAERLADLFDQYQVYRADWLEDWAAGRHQLRNGRGESKPLDPANCWQAELWRALLLDVGAEGMAQSRAGVHQRFIERINNLEQAPSGLPSRVIVFGISSLPAQALEALAGLARFSQVLLCVHNPCRHHWSDIVADKDLLRNEYKRQARKASMPVIIDPQTLHQHAHPLLAAWGKQGRDYISLLDSYDDPNSYRAAFRDGRIDLFSDSEPTTLLNQLQDDILELRPLNETRELWPAVDLEHDVSIRFHIAHSAQREVEILHDQLLQRFSADPTLRPRDIIVMVPDVDSYAPHIRAVFGQLERNDPRFIPFTLTDQGQRGRDPLLIAVEHLLKLPDSRFPVSEILDLLDVPALRERFAIKERDLPTLHRWIEGAGIRWGLNAEQRAGLGLPTELEQNSWRFGLRRMLLGYAVGTGTACNGIEPYDEIGGLDAALIGPLVALLDALSDAHQALSRPASPQAWGERLQRLMQLFFLPSSEHDDYLLGQLEQLREAWLETCESVGLQDELPLTVVREAWLAGLDQGRLSQRFLAGAVNFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRPGDRSRREDDRYLLLEALLSARDQLYISWVGRSIRDNSDRPASVLIGQLRDHLASGWQHAKTDPPLIDAMTQEHPLQPFSARYFHEGDPLFSYAREWQLLHEAPVAVNPVNTLVQHQQEEPLSLGQLQDFLRNPVKHFFSQRLKVFFEAAEVPLADEEPFVLDALERYSLSDSLLSAALTQPDHLDQALNAQALRLQGSGLLPMVGFGECLRKELIEPLPDLVQRYQHLLALWPTPHTGAEPISFEYQGIQLEGWISGLHRRSDGGLLSVTTIPNSIGSIKTRKWHRLIRPWVNHVVACACGLPLSTGLVASDDTLLLAPLDKPTAQEILGNLLLAWHTGMSTPLPVAVKTAFAWLGQTDPVKAQAAASKAYEGDGITTDGERRETPALTRQFPDYAALVASEEFEGWCETLYRPLLNAPWRSLSNMEASA
>CP027757.1|AZE74944.1|5215665_5219337_-|Exodeoxyribonuclease-V-beta-chain
MIGKPLALAFPLKGSQLIEASAGTGKTFTISALYLRLVLGHGGDESGFGRELLPPQILVVTFTDAATKELRERIRIRLAEAARFFRDEIEQPDALIADLRDQYAPQQWPACANRLDIAAQWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMYDDALNWVRSHWGGPAALMPRVRALFGSERPTDESREPAELINACLQERRAALVSLKAPWQQWAVELRDICLQAVAAKAVDGRKMQARYFEPWFEKISAWAADETLEQLDIGTGFTRLTPDGMAEAWKGEPPQHPGIEAMAGLKASLDALPTPDAAVLQHAAGWVGKRFEEEKRRRAEMGFDDMLIRLNAALQADGGERLASVIREQFPVALIDEFQDTDPVQYRIFDSIYRIEENHLDSGLFLIGDPKQAIYAFRGADIYTYLRARQSTTGRHHTLGTNFRSSHAMVEAVNHVFQRAETGRGAFLFREPNGENPVPFHPVLSQGRREQLQVDGQTLPAMNLWHLPTDQPISNALYRQLLAAACATQIVALLNGGQQGTAGFVTKDGFSGVLPSNIAILVRDGKEAQAVRVELASRGVRSVYLSDKDSVFAAQEARDLLTWLKACAEPDVERPLRAALACVTLNLSLAELERLNQDELAWESRVMQFRGYRSIWRTQGVLPMLRRLLHDFKLPQTLIARSDGERVLTNLLHLSELLQQAASELDGEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYDLVFLPFICSAKPVDGSRLPLHYHDEQGKSQVSLRPTAELIAQADNERLAEDLRLFYVALTRAKHACWLGIADLKRGNNSSSVLHLSALGYLLGAGASLGESADLARWLLDLQQGCPAISYAPVPDAQDILFHPPRNEATLLAPLLPKRKAAENWWIASYSALRIGDSMSAASLEAPESPQAQKLFDDERLDPDAPREVVASGGDIHRFPRGPNPGTFLHGLLEWAGEEGFNVTPEAIEKAVGARCNRRNWEGWIVTLSGWLGHLLQTPLPLCNDHVTLSGLKQYQIEMEFWFASHKVDVLALDKLVCQHTHGGVSRVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNWLGPDDSAYTFDAMDHSILEHRYDLQYVLYLLALHRQLKARLPDYDYDQHVGGALYLFLRGTQSVSQGAYFTRPPRELIEGLDLLFQGKPIPPKVEPAWEQGVLL
>CP027757.1|AZE74943.1|5213599_5215669_-|Exodeoxyribonuclease-V-alpha-chain
MNLSPLPLEELAPLSRAADLLQLLERWVDRGWLRALDKAFVGFLHELDPQADPLVLLAAALTSHQLGHGHVCLDLFETLKAPDFALSLPPEGDQHTGVMLLPSQLLHGLDGAHWCHALASSQLVALAVDGSAAAQSRPLVLSGKRLYLRRYWAYERRIDSALRQRLASVESVADDLPQRLNRLFDQPAPDGVIDWQKLACALATRGPFSIVTGGPGTGKTTTVVRLLALLQAPAVESGSPLRIRLAAPTGKAAARLTESISQQVLSLTVADNVREKIPTQVTTVHRLLGSRPGTRHFRHHLDNPLPLDVLVVDEASMIDLEMMANLLDALPAHARLILLGDKDQLASVEAGAVLGDLCRDAEAGWYSPHTRQWLQAVSGEDLSTSGLQEDLDGSHPLAQQVVMLRYSRRFGEGSGIGQLARWVNQQNAEEARQLLAARRYDDLFCLSLKGEHDHALERLVLDGQGDGAQGYRYYLNLLQSARPSLDTRRDDPAWTHWAQQLLQAFDAFQLLCAVRKGPWGVEGLNLRITAALRKVRLIEGDEQWYEGRPVLMTRNDYGLGLMNGDIGIALKLPESDGGPQVLRVAFPRNDGQGGVRFVLPSRLNDVETVYAMTVHKSQGSEFTHTALILPDALNPVLTKELIYTGITRAKRWFSLIEPRSGVFEEAVRRKVKRLSGLMLELDTVPEETD
>CP027757.1|AZE74942.1|5212889_5213456_-|Uncharacterized-protein-YfiR
MNVAGSPTERSLSWRRMLLVAVLCLLVTPLSAQTQSLAEQRAQAVTQVVLGILSYARWPVEPAQLRLCVVGPTQYTDDLVKGTTQATGRPVLVRRLLVDHPDIVNACDAVYIGKLTADERSRLFTSLIGHPVLSISEGGDQCTVGSLFCLRVSDEQVSFEVNLDSVARSGVRIHPSVLQLSRRRAPGS
>CP027757.1|AZE74941.1|5211630_5212893_-|Inner-membrane-protein-YfiN
MSGTKVRPTLRSVIARGHMILALVAVTLASVSLTLLGVLALRVYAEHNLHLIARSINYTVEAAVVFNDSAAATEALSLIASTEEVAQAEVFDINGKLLARWVRPETGMLSRVELQIAHALLEQPISQPILRQGQTVGSIHLVGHGGSLLRFLLSGLVGILICTALSAWVALHLSRRLLNGITVPLQRLAAVAHAARSERDFDRRVPSAQIAELDSLGSDFNALLGEMEAWQSHLQSENETLAHQASHDSLTGLPNRAFFEGRLIRALRSAAKVNEQVAVLFLDSDRFKDINDSFGHAAGDAVLVAVAERVRAQLREDDLVARLGGDEFAVLLAPLHKAEDAQRIADKIIASMDVPIPLPGDTHVLTSLSIGIAIYPDHGATPGTLLNAADAAMYQAKRLSSGGQQTAESERPVVNVQHRS
>CP027757.1|AZE74940.1|5211133_5211625_-|Integral-membrane-protein-YfiB
MFANTRVLFISLLVAFLALSGCQTPPPKGLTPAQVAVLKQQGFELTDEGWAFGLSGKVLFGSDVETLNKPSTDIVERIGSALVGAGIERVRVDGHTDASGKEPYNVALSLRRAESVGKVLTRVGMKEQNIQLRGLGSSEPVASNTTTAGRTENRRVSIVVIAD
>CP027757.1|AZE74939.1|5209864_5210854_+|Transcriptional-regulator,-LysR-family
MQTSNKNAHKSRSNMQKNITSLGSLNWDDLKFFLEVARTRKASVAAKRLAVDYTTVSRRISSLEVSLGTLLFEKSRTSGFVLTTEGQRLLGYAETIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFVTPQLSHFVDTYPAISVDILPLPHFISLSKREADIVIALERPEHGPYVCCKLCDYKLQLYATQDYLDQHPPIRKPADLAEHPFISYVDDLAFSSELLYLANVVPGASASLRSTSVIAQYVAAQQGRSMAILPCFLAAQDPRLLPVLGQQIAITRQFWMYCREDLRKLKRITLLWDYIREVTEQNQGLLMGETREMRFAD
>CP027757.1|AZE74938.1|5208255_5209773_-|Methylmalonate-semialdehyde-dehydrogenase
MNASADISVQQVKLLINGEWVESKTTQWQDIVNPATQQVLAKVPFATADEVNAAIDAAHRAFQTWKLTPIGARMRIMLKLQALIREHSKRIAVVLSAEQGKTIADAEGDIFRGLEVVEHACSIGTLQMGEFAENVAGGVDTYTLRQPIGVCAGITPFNFPAMIPLWMFPMAIACGNTFVLKPSEQDPLSTMLLVELALEAGVPAGVLNVVHGGKDVVDALCTHKDIKAVSFVGSTAVGTHVYDLAGKHGKRVQSMMGAKNHAVVLPDANREHTLNALVGAGFGAAGQRCMATSVVVLVGAAKQWLPDLKALAQKLKVNAGSEAGTDVGPVISKRAKARILELIESGVKEGAKLELDGRDIKVPGFEQGNFVGPTLFSGVTTDMRIYTEEIFGPVLVVLEVDTLDQAIALVNANPFGNGTGLFTQSGAAARKFQSEIDVGQVGINIPIPVPVPFFSFTGSRGSKLGDLGPYGKQVVQFYTQTKTVTSRWFDDDTVNDGVNTTINLR
>CP027757.1|AZE74937.1|5207352_5208240_-|3-hydroxyisobutyrate-dehydrogenase
MKIAFIGLGNMGAPMARNLIKAGHALNLFDLNQAVLKELAELGGTISSSPRDAAQGAELVITMLPAAAHVRSVWLNEDGVLAGIGKGVPAVDCSTIDPQTIRDVAAAAAKQGVAVADAPVSGGTGGAQAGTLTFMVGANPELFATLQPVLAQMGRNIVHCGDVGTGQIAKICNNLLLGISMVGVSEAMALGDALGIDTQVLAGIINSSTGRCWSSDTYNPWPGVIETAPSSRGYTGGFGADLMLKDLGLATEAARQAHQPVILGAVAQQLYQSMSQRGEGGKDFSAIINSYRKPK
>CP027757.1|AZE74936.1|5206960_5207305_+|hypothetical-protein
MSKPITVLRDTHPLPVLDACKWEKLEGDPHTVNLNAYTSEDGSKIMGTWICTPGKWYVEYVKWEYCHFQEGYCVITPEGMEPIHLRAGDIFVVEPGMKGTWEVVETVRKYFVFA
>CP027757.1|AZE74946.1|5228728_5229349_-|Sulfoxide-reductase-heme-binding-subunit-YedZ
MRFPIWRIGVFIAAAVWPLLWLYEAWSFALGPDPGKVLVDRLGLGTLILLLVTLGMTPLQKLSGWAGWIAVRRQLGLWCFAYVVLHLAAYCVFVLGLDWSQLGVELRKRPYIIVGALGFLALLVLAVTSNRYSQRRLGSRWKKLHRLVYVILGLGLLHMLWIVRADLKEWAVYASIGALLLLLRVPPVMRRIPRLIAKKTPSATKV
>CP027757.1|AZE74947.1|5229348_5230362_-|Sulfoxide-reductase-catalytic-subunit-YedY
MLIKLPKASDCHESDVTPESLYFSRRSLLGGALAGIAASSLPRWASADDAARYADVEAGRAPSWFAEKLPGTKWQAVTVKDEAITPFKDATHYNNFYEFGTDKGDPAQNAGSLKTEPWSVVIDGEVAKPGRYALEDFMKPYELEERIYRLRCVEAWSMVIPWIGFPISALLKQVEPTSKAKYIRFETLQDPKSMPGQRSSFGLIDWPYVEGLRLDEAMNPLAILAVGMYGRELPNQNGAPLRLVVPWKYGFKSVKSIVRISLVSEQPKTTWQSIAADEYGFYANVNPTVDHPRWTQARERRLPSGLFSPNVRDTQMFNGYSDEVASLYTGLDLRKNY
>CP027757.1|AZE74948.1|5230425_5231283_-|CDP-diacylglycerol--serine-O-phosphatidyltransferase
MSERPEEPNQASDAESMLPIDEHVEEGHDAEGRKVRHRGIYLLPNLFTTANLFAGFYSIINSMSAQSALAAGDAASASKYFGFAAIAIFVAMVLDGLDGRVARMTNTQSAFGAEYDSLSDMVAFGVAPALLAFAWALGDMGKVGWMVAFIYVAGAALRLARFNTQVGTADKRYFIGLASPAAAGVVAGIVWAFSDYGIQGSKMSFLVALMVAAAGMLMVSNIKYNSFKELDLKGRVPFVAILVVVLVFAVVFSDPPRILLLAFLVYAASGPIQYLLHLRRDKTLS
>CP027757.1|AZE74949.1|5231428_5232445_-|Ketol-acid-reductoisomerase
MKVYYDKDCDLSIIQGKKVAIIGYGSQGHAQACNLKDSGVDVTVGLRKGSATVAKAEAHGLKVTDVASAVAAADLVMILTPDEFQSALYKNEIEPNIKKGATLAFSHGFAIHYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALSYAAGVGGGRTGIIETTFKDETETDLFGEQAVLCGGTVELVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMYEGGIANMNYSISNNAEYGEYVTGPEVINAESRQAMRNALKRIQDGEYAKMFISEGATGYPSMTAKRRNNAAHGIEVIGEQLRSMMPWIGANKIVDKAKN
>CP027757.1|AZE74950.1|5232492_5232984_-|Acetolactate-synthase-small-subunit
MRHIISLLLENEPGALSRVVGLFSQRNYNIESLTVAPTEDPTLSRLTLTTVGHDEVIEQITKNLNKLIEVVKLVDLSESAHIERELMLVKVKATGAQRAEIKRTTDIYRGQIVDVSASVYTVQLTGTSDKLDSFIQSIGTASILETVRSGVTGIARGDKVLSI
>CP027757.1|AZE74951.1|5232986_5234711_-|Acetolactate-synthase-large-subunit
MELLSGGEMLVRFLRDEGVDYIYGYPGGALLHVYDALFKEPAVTHILVRHEQAATHMADGYARATGKAGVVLVTSGPGATNAITGIATAYMDSIPMVIISGQVASTMVGTDAFQETDMIGISRPIVKHSFMIKHASEIPEIMKKAFYLAQSGRPGPVVVDIPKDMTNPAEKFEYVFPKKAKLRSYSPAVRGHSGQIRKAAEMLLAAKRPVLYSGGGVILGGGSAPLTELAKLLNLPVTNTLMGLGAFPGSDRQFVGMLGMHGSYTANLTMHHADVILAVGARFDDRVINGASKFCPNAKIIHIDIDPASISKTIKADVPIVGPVESVLTEMVAALKDIGEAPNKESVASWWKQIDEWRGDRGLFPYDKGDGSIIKPQTVIETLCEVTKGDAFVTSDVGQHQMFAAQYYTFDKPNRWINSGGLGTMGFGFPAAMGVKLSFPDADVACVTGEGSIQMNIQELSTCLQYGLPVKIVCLNNGVLGMVRQWQDMSYGSRHSHSYMESLPDFVKLVEAYGHVGIRITDLKDLKPKMEEAFAMKDRLVFIDIQVDTSEHVYPMQIKDGSMRDMWLNKTERT
>CP027757.1|AZE74952.1|5235142_5235472_-|Uncharacterized-protein-YqcC
MDARFPAIAEQLLLIERELRVQGWWDEVAPSAEALSSVEPFSVDTLDFHQWLQWIFLVRMKQILEQDLPLPNASGILEMAEMVYADRPLESLGLRNALKKFDQLIVDAR
>CP027757.1|AZE74953.1|5235471_5236206_-|TPR-domain-protein
MNKLWIPAIAALALLGGCSSVQRGSIPVVDSSTSVSNNDRISANGGFRQTVVKRPAQAATQAIPQDSGVVVMVPGSGAATSAPISAEPWTPGPSTSGPVDSAPIQTAPVNQGTYSMPSTPSGIPSASSAGGLSADEQLDGPVLALLTTAQQQQAGGDLNGASSSLERAQRVAPREPQVLYRLAQVRMAQGDAPQAEQFARRGLSLANGRPALQASLWALIGDARAAQGDAAGASQARQKAKVSL
>CP027757.1|AZE74954.1|5236222_5238547_-|Multimodular-transpeptidase-transglycosylase
MTRTRSPRSRKKPPSRSLRPWLGWALKLGLVGLVVIAGFAVYLDAVVQEKFSGKRWTIPAKVYARPLELFSGQKLSKEDFLTELDALGYRREPVSNGPGAAAVSGNTVDLNTRGFQFYEGLEKAQPVRVRFSGDYVAELSSLNGSKLPVVRLEPLMIGGIYPKNLEDRILIKLDQVPPYLLETLVAVEDRDFYSHWGVSPKSIARAIWVNTSGGKMTQGGSTLTQQLVKNFYLTNERSLTRKLTEAMMAMLLELHYSKQEILEAYLNEVFVGQDGQRAVHGFGLASQFFFGQPLSELKLHQVALLVGMVKGPSYYNPRRNPERALERRNLVLDVLEQQGVATAEQVAAAKKMPLGVTTRGKLADSSFPGFIDLVKRQLREDYRDEDLTEEGLRIFTSFDPILQMKAEASVNDTFKRLTGRKGSDEVEAAMVVTNPETGEVQAMIGSRQASFAGFNRALDAVRPIGSLVKPAVYLSALEKPSKYTLTSWLSDDPLSVKGADGQVWTPKNFDRRSHGTVFLYQGLAHSYNISTSRLGLEVGVPNVLKTLARLGIEREFPAFPSILLGAAAMTPMEVATMYQTLANGGFNTPMRGIRSVLTADGEPLKRYPFQIQQRFDAGSIYLIQNAMQRVMREGTGRSVYNVLPSNLTLAGKTGTSNDSRDSWFAGFGQDVLAVVWLGRDDNGKTPFTGATGALQVWTSFMRKADPLPLNMPQPDNIVQAWIDPHTGQGSDANCPGAVQMPYIRGSEPPPGAACGGSAPADAESVMDWVKGWMN
>CP027757.1|AZE74955.1|5238665_5240222_+|hypothetical-protein
MSQSLIAALQNPALYPHPVEAFQVIETHISWVILTGAYAYKLKKPMNFGFLDFTQLEDRGHFCREELRLNQRLTADLYLEVLPITGTSEAPQLGGDGPVIEYALKMRQFPQSQMLSTLQANGELTCAHIDEMAQQIAHFHLTAPKVPQEHPAGTPEEVMAPVRQNFDQIRPFLSDKADLTQLEALQAWAESSFERLKPLLEQRKLNGYTRECHGDIHLGNATLIDGHVVIFDCIEFNEPFRFTDVYADTAFLAMDLEDRGLKSLARRFISQYLELTGDYQGLELLNFYKAYRALVRAKVALFSMPSEASPVQRANTLRQYRNYANLAESYSTIPSRFLAITHGVSAVGKSHVAMRLVEALGAVRLRSDVERKRLFGEQQIENTPQVGIYNHDASAATYARLNEIADTVLRAGYPVVLDATFLKRAQRDAAAQVAEATGAPFLILDCNAPQAVIASWLAQRQADKNDPSDATLSVIEEQQASREPLTAQELLLSKRVETNESGTLDALVAHIRQRLPGL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1347517 : 1388873

uncultured_Caudovirales_phage(28.57%)

tail,tRNA,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE71420.1\|1347517_1347988_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
AZE71421.1\|1348068_1349112_-	Ferric iron ABC transporter, ATP-binding protein	Q6GZ03	Mycoplasma_phage	8.6e-21	36.3
AZE71422.1\|1349108_1350032_-	Ornithine carbamoyltransferase	A0A1J0F9B8	Only_Syngen_Nebraska_virus	3.2e-19	27.7
AZE71423.1\|1350464_1352573_+	Formate dehydrogenase-O, major subunit	NA	NA	NA	NA
AZE71424.1\|1352659_1352998_+	Glutaredoxin-related protein	NA	NA	NA	NA
AZE71425.1\|1353060_1353531_-	Bacterioferritin	NA	NA	NA	NA
AZE71426.1\|1353731_1353950_-	Bacterioferritin-associated ferredoxin	NA	NA	NA	NA
AZE71427.1\|1354193_1354796_+	Alkyl hydroperoxide reductase subunit C-like protein	NA	NA	NA	NA
AZE71428.1\|1354862_1355534_-	Ribonuclease T	NA	NA	NA	NA
AZE71429.1\|1355530_1356577_-	Dihydroorotase	NA	NA	NA	NA
AZE71430.1\|1356733_1357642_+	outer membrane protein, OmpA family	NA	NA	NA	NA
AZE71431.1\|1357771_1358989_+	Argininosuccinate synthase	NA	NA	NA	NA
AZE71432.1\|1359616_1360249_+	Two-component transcriptional response regulator, LuxR family	NA	NA	NA	NA
AZE71433.1\|1360332_1360515_-	hypothetical protein	NA	NA	NA	NA
AZE71434.1\|1360622_1361261_-	Endonuclease III	NA	NA	NA	NA
AZE71435.1\|1361369_1362539_-	Electron transport complex protein RnfB	NA	NA	NA	NA
AZE71436.1\|1362626_1364678_-\|tRNA	Methionyl-tRNA synthetase	NA	NA	NA	NA
AZE71437.1\|1364850_1365945_+	[4Fe-4S] cluster assembly scaffold protein Mrp (ApbC)	NA	NA	NA	NA
AZE71438.1\|1366438_1366762_-	4Fe-4S dicluster domain	NA	NA	NA	NA
AZE71439.1\|1366904_1369553_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.2e-29	21.9
AZE71440.1\|1369709_1369985_-	hypothetical protein	NA	NA	NA	NA
AZE71441.1\|1370660_1371338_-	hypothetical protein	NA	NA	NA	NA
AZE71442.1\|1371420_1371792_-	hypothetical protein	NA	NA	NA	NA
AZE71443.1\|1371784_1372273_-	GepA protein	D0UIM3	Aggregatibacter_phage	2.2e-27	44.5
AZE71444.1\|1372516_1373251_+	Transcriptional regulator	B5TK58	Pseudomonas_phage	4.8e-119	87.7
AZE71445.1\|1373438_1373558_+	hypothetical protein	NA	NA	NA	NA
AZE71446.1\|1373841_1374186_+	Holin	B5TK61	Pseudomonas_phage	1.7e-45	80.2
AZE71447.1\|1374464_1374980_+	Putidacin L1	NA	NA	NA	NA
AZE71448.1\|1375132_1375645_+	hypothetical protein	NA	NA	NA	NA
AZE71449.1\|1375648_1376260_+\|plate	Baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	3.8e-45	53.3
AZE71450.1\|1376269_1376602_+\|plate	Baseplate assembly protein W	A0A2H4JI46	uncultured_Caudovirales_phage	2.8e-34	64.5
AZE71451.1\|1376598_1377594_+\|plate	Phage-related baseplate assembly protein	A0A2H4JC04	uncultured_Caudovirales_phage	9.2e-113	64.4
AZE71452.1\|1377590_1378229_+	Tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	4.8e-38	51.9
AZE71453.1\|1378225_1378756_+\|tail	Phage tail fiber protein	B0ZSG1	Halomonas_phage	1.4e-48	56.8
AZE71454.1\|1378809_1379562_+	hypothetical protein	NA	NA	NA	NA
AZE71455.1\|1379571_1379808_+	hypothetical protein	NA	NA	NA	NA
AZE71456.1\|1379895_1380069_+	hypothetical protein	NA	NA	NA	NA
AZE71457.1\|1380071_1381238_+\|tail	Major tail sheath protein	B0ZSG8	Halomonas_phage	1.4e-125	57.5
AZE71458.1\|1381237_1381744_+	hypothetical protein	Q6R4W3	Vibrio_virus	3.8e-22	34.5
AZE71459.1\|1381927_1382500_+	hypothetical protein	B0ZSH0	Halomonas_phage	1.6e-29	40.1
AZE71460.1\|1382508_1382622_+	hypothetical protein	NA	NA	NA	NA
AZE71461.1\|1382627_1384448_+\|tail	Phage tail length tape-measure protein	NA	NA	NA	NA
AZE71462.1\|1384447_1384831_+	Phage protein	B0ZSH2	Halomonas_phage	4.6e-36	59.8
AZE71463.1\|1384823_1385036_+\|tail	P2-like prophage tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	4.8e-19	64.3
AZE71464.1\|1385045_1386056_+\|tail	Phage tail protein D	A0A2H4JH05	uncultured_Caudovirales_phage	4.8e-101	56.0
AZE71465.1\|1386123_1386681_+	Lytic enzyme	B5TK83	Pseudomonas_phage	9.8e-80	77.6
AZE71466.1\|1386668_1387148_+	hypothetical protein	B5TK84	Pseudomonas_phage	1.4e-37	56.9
AZE71467.1\|1387230_1387731_+	Nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.6e-68	80.1
AZE71468.1\|1387814_1388873_+	RecA protein	A0A0S2MVG1	Bacillus_phage	2.4e-111	62.4

DBSCAN-SWA_2

1494505 : 1499467

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE71569.1\|1494505_1495255_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.6e-63	49.8
AZE71570.1\|1495254_1495932_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.1e-43	53.1
AZE71571.1\|1496141_1496978_+	Murein hydrolase activator NlpD	A0A0S2SXL7	Bacillus_phage	8.2e-06	33.3
AZE71572.1\|1497083_1498091_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.3e-34	36.2
AZE71573.1\|1498303_1498513_-	Cold shock protein of CSP family	Q9AZD3	Lactococcus_phage	2.2e-16	66.7
AZE71574.1\|1498900_1499467_+	Deoxycytidine triphosphate deaminase	S5VM63	Pseudomonas_phage	3.7e-74	73.3

DBSCAN-SWA_3

3034965 : 3087833

Streptomyces_phage(14.29%)

integrase,protease

attL 3086761:3086784|attR 3087858:3087881

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE72916.1\|3034965_3036279_+\|protease	ABC-type protease exporter, membrane fusion protein family component PrtE/AprE	NA	NA	NA	NA
AZE72917.1\|3036281_3037616_+\|protease	ABC-type protease exporter, outer membrane component PrtF/AprF	NA	NA	NA	NA
AZE72918.1\|3037647_3040605_+\|protease	Serine protease	NA	NA	NA	NA
AZE72919.1\|3040780_3043888_+\|protease	Extracellular serine protease precursor	NA	NA	NA	NA
AZE72920.1\|3043982_3045407_+	Lipase	NA	NA	NA	NA
AZE72921.1\|3045540_3045765_-	hypothetical protein	NA	NA	NA	NA
AZE72922.1\|3045952_3047599_+	hypothetical protein	NA	NA	NA	NA
AZE72923.1\|3047595_3049854_+	DinG family ATP-dependent helicase	NA	NA	NA	NA
AZE72924.1\|3050434_3050551_+	hypothetical protein	NA	NA	NA	NA
AZE72925.1\|3050580_3051126_+	hypothetical protein	NA	NA	NA	NA
AZE72926.1\|3051210_3051423_+	hypothetical protein	NA	NA	NA	NA
AZE72927.1\|3051434_3051569_+	hypothetical protein	NA	NA	NA	NA
AZE72928.1\|3051559_3052912_-	sodium/hydrogen exchanger family protein	NA	NA	NA	NA
AZE72929.1\|3053095_3054310_+	Aspartate aminotransferase	NA	NA	NA	NA
AZE72930.1\|3054335_3054659_-	Thioredoxin	A0A1J0GW78	Streptomyces_phage	8.0e-18	41.9
AZE72931.1\|3054655_3054916_-	Thioredoxin	NA	NA	NA	NA
AZE72932.1\|3055058_3055499_-	Transcriptional regulator, AsnC family	NA	NA	NA	NA
AZE72933.1\|3055607_3056510_+	Permease of the drug/metabolite transporter (DMT) superfamily	NA	NA	NA	NA
AZE72934.1\|3056622_3058161_+	hypothetical protein	NA	NA	NA	NA
AZE72935.1\|3058260_3060288_-\|protease	putative protease YdcP	Q6DW11	Phage_TP	8.1e-23	29.2
AZE72936.1\|3060295_3060475_+	hypothetical protein	NA	NA	NA	NA
AZE72937.1\|3060503_3062153_+	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase	A0A2H4PQU7	Staphylococcus_phage	6.3e-74	37.0
AZE72938.1\|3062174_3062942_+	3-hydroxyacyl-CoA dehydrogenase	F2NZ40	Diadromus_pulchellus_ascovirus	9.9e-06	29.6
AZE72939.1\|3062954_3064139_+	3-ketoacyl-CoA thiolase	NA	NA	NA	NA
AZE72940.1\|3064148_3065276_+	Acyl-CoA dehydrogenase, short-chain specific	NA	NA	NA	NA
AZE72941.1\|3065287_3066061_+	Enoyl-CoA hydratase	NA	NA	NA	NA
AZE72942.1\|3066559_3067711_-	Acyl-CoA dehydrogenase	NA	NA	NA	NA
AZE72943.1\|3067714_3068818_-	3-hydroxyisobutyryl-CoA hydrolase	NA	NA	NA	NA
AZE72944.1\|3068935_3069799_-	Esterase/lipase	NA	NA	NA	NA
AZE72945.1\|3069798_3071412_-	putative cytochrome P450 hydroxylase	NA	NA	NA	NA
AZE72946.1\|3071413_3073033_-	Putative cytochrome P450 hydroxylase	NA	NA	NA	NA
AZE72947.1\|3073306_3074014_-	Putative transmembrane protein	NA	NA	NA	NA
AZE72948.1\|3074180_3074405_-	hypothetical protein	NA	NA	NA	NA
AZE72949.1\|3074690_3076313_-	4-amino-4-deoxy-L-arabinose transferase	NA	NA	NA	NA
AZE72950.1\|3076313_3077696_-	UDP-glucose 6-dehydrogenase	A0A127AXI2	Bacillus_phage	9.9e-81	38.2
AZE72951.1\|3077692_3078106_-	Undecaprenyl phosphate-aminoarabinose flippase subunit ArnF	NA	NA	NA	NA
AZE72952.1\|3078102_3078450_-	Undecaprenyl phosphate-aminoarabinose flippase subunit ArnE	NA	NA	NA	NA
AZE72953.1\|3078446_3080102_-	Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase	NA	NA	NA	NA
AZE72954.1\|3080098_3080983_-	4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase ArnD	NA	NA	NA	NA
AZE72955.1\|3080982_3082986_-	UDP-4-amino-4-deoxy-L-arabinose formyltransferase	A0A2K9KZK0	Tupanvirus	2.4e-19	26.0
AZE72956.1\|3082982_3084017_-	Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	S5FKN0	Shigella_phage	4.7e-35	32.4
AZE72957.1\|3084428_3085241_+	hypothetical protein	NA	NA	NA	NA
AZE72958.1\|3085363_3086677_+	Transposase InsG for insertion sequence element IS4	NA	NA	NA	NA
3086761:3086784	attL	NA	NA	NA	NA
AZE72959.1\|3086918_3087833_+\|integrase	Phage integrase family protein	NA	NA	NA	NA
AZE72959.1\|3086918_3087833_+\|integrase	Phage integrase family protein	NA	NA	NA	NA
3087858:3087881	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3250265 : 3265175

Pseudomonas_phage(41.67%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE73123.1\|3250265_3251540_-	Error-prone, lesion bypass DNA polymerase V (UmuC)	I6RSM4	Salmonella_phage	4.3e-107	50.1
AZE73124.1\|3251532_3251688_-	Error-prone repair protein UmuD	NA	NA	NA	NA
AZE73125.1\|3252059_3252173_+	hypothetical protein	NA	NA	NA	NA
AZE73126.1\|3252332_3253112_+	hypothetical protein	NA	NA	NA	NA
AZE73127.1\|3253355_3253496_-	hypothetical protein	NA	NA	NA	NA
AZE73128.1\|3253548_3253650_+	hypothetical protein	NA	NA	NA	NA
AZE73129.1\|3253882_3254077_+	hypothetical protein	NA	NA	NA	NA
AZE73130.1\|3254349_3254559_+	hypothetical protein	A0A2D1GNR5	Pseudomonas_phage	2.8e-11	60.0
AZE73131.1\|3254651_3255017_+	hypothetical protein	A0A2H4IZV2	uncultured_Caudovirales_phage	1.0e-37	73.9
AZE73132.1\|3255288_3255975_+	Gifsy-2 prophage protein	A0A2H4J991	uncultured_Caudovirales_phage	1.4e-128	94.7
AZE73133.1\|3256062_3257253_-	Acetyltransferase	A0A088CPR9	Enterobacteria_phage	4.0e-62	38.2
AZE73134.1\|3257318_3257819_-	hypothetical protein	A0A2H4IZW4	uncultured_Caudovirales_phage	1.5e-58	75.0
AZE73135.1\|3257818_3258244_-	Cell wall hydrolase	A0A2D1GNI1	Pseudomonas_phage	4.4e-72	89.4
AZE73136.1\|3258299_3258839_-\|tail	tail fiber assembly domain protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	3.8e-12	38.9
AZE73137.1\|3258839_3259586_-	hypothetical protein	K7PH95	Enterobacterial_phage	1.7e-07	27.0
AZE73138.1\|3259634_3260330_-	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	1.2e-29	38.2
AZE73139.1\|3260331_3260661_-	hypothetical protein	NA	NA	NA	NA
AZE73140.1\|3260657_3264527_-\|tail	Phage tail fiber protein	A0A1B0VMH5	Pseudomonas_phage	0.0e+00	71.8
AZE73141.1\|3264605_3264944_+	hypothetical protein	NA	NA	NA	NA
AZE73142.1\|3264992_3265175_-\|tail	Phage tail assembly protein I	A0A1B0VMI5	Pseudomonas_phage	1.2e-26	100.0

DBSCAN-SWA_5

3269230 : 3288152

Pseudomonas_phage(57.89%)

terminase,integrase

attL 3271461:3271476|attR 3288102:3288117

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE73147.1\|3269230_3269704_+	hypothetical protein	A0A2H4J8E2	uncultured_Caudovirales_phage	5.9e-09	32.3
AZE73148.1\|3270121_3270592_-\|terminase	Phage terminase	A0A1B0VP58	Pseudomonas_phage	4.5e-78	98.6
AZE73149.1\|3270566_3271043_-	Phage protein	A0A1B0VMH2	Pseudomonas_phage	3.4e-81	97.5
AZE73150.1\|3271074_3271692_-	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	2.3e-106	90.8
3271461:3271476	attL	NA	NA	NA	NA
AZE73151.1\|3271879_3272014_+	hypothetical protein	NA	NA	NA	NA
AZE73152.1\|3272186_3272618_+	hypothetical protein	NA	NA	NA	NA
AZE73153.1\|3272727_3273045_-	lipoprotein, putative	A0A059VJW1	Pseudomonas_phage	1.3e-15	51.9
AZE73154.1\|3273044_3273416_-	Methyl-accepting chemotaxis protein	A0A059VK40	Pseudomonas_phage	4.0e-37	82.6
AZE73155.1\|3273943_3274141_-	hypothetical protein	NA	NA	NA	NA
AZE73156.1\|3274284_3274602_-	hypothetical protein	A0A0S2SY93	Pseudomonas_phage	1.4e-11	70.7
AZE73157.1\|3275381_3275963_-	hypothetical protein	A0A059VF83	Pseudomonas_phage	2.1e-80	74.1
AZE73158.1\|3275959_3276202_-	Phage NinG rap recombination	A0A1B0VME4	Pseudomonas_phage	8.6e-33	90.0
AZE73159.1\|3276479_3276653_-	hypothetical protein	NA	NA	NA	NA
AZE73160.1\|3276706_3277189_+	hypothetical protein	A0A1B0VMB5	Pseudomonas_phage	8.8e-61	76.6
AZE73161.1\|3277245_3278244_-	hypothetical protein	NA	NA	NA	NA
AZE73162.1\|3278293_3278542_+	Cytosine-specific DNA methyltransferase	Q6V7R9	Burkholderia_virus	4.0e-09	74.4
AZE73163.1\|3278623_3278947_+	hypothetical protein	NA	NA	NA	NA
AZE73164.1\|3278930_3279599_-	hypothetical protein	NA	NA	NA	NA
AZE73165.1\|3279701_3280472_-	hypothetical protein	NA	NA	NA	NA
AZE73166.1\|3280518_3281442_+	C-5 cytosine-specific DNA methylase family protein	A0A142KB20	Gordonia_phage	2.9e-20	33.5
AZE73167.1\|3281478_3281661_-	hypothetical protein	NA	NA	NA	NA
AZE73168.1\|3281779_3282148_+	hypothetical protein	G3KAZ6	Pseudomonas_phage	2.7e-25	56.4
AZE73169.1\|3282144_3282669_+	hypothetical protein	NA	NA	NA	NA
AZE73170.1\|3282754_3282952_+	hypothetical protein	NA	NA	NA	NA
AZE73171.1\|3282954_3283659_+	Phage protein	A0A2H4IY33	uncultured_phage	7.0e-67	52.7
AZE73172.1\|3283708_3284803_+	DNA modification methylase	A0A1B0VM49	Pseudomonas_phage	4.2e-183	87.1
AZE73173.1\|3284839_3285031_-	hypothetical protein	A0A2H4J4E5	uncultured_Caudovirales_phage	1.0e-28	95.2
AZE73174.1\|3285207_3285426_+	hypothetical protein	A0A2H4J1L2	uncultured_Caudovirales_phage	2.0e-20	76.4
AZE73175.1\|3285428_3285638_+	hypothetical protein	NA	NA	NA	NA
AZE73176.1\|3285782_3286673_+\|integrase	Phage integrase:Phage integrase, N-terminal SAM-like	C8CLF4	Xylella_phage	3.6e-76	54.4
AZE73177.1\|3287030_3287207_+	hypothetical protein	NA	NA	NA	NA
AZE73178.1\|3287240_3288152_-	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	1.4e-67	47.3
3288102:3288117	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3747730 : 3757718

uncultured_Caudovirales_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE73581.1\|3747730_3748555_-\|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	A0A0U2S5Z2	Escherichia_phage	6.9e-106	71.6
AZE73582.1\|3748838_3749441_+	Inner membrane protein YohC	NA	NA	NA	NA
AZE73583.1\|3749570_3750065_+	Protein SprT	NA	NA	NA	NA
AZE73584.1\|3750159_3751335_-	Alpha-methylacyl-CoA racemase	NA	NA	NA	NA
AZE73585.1\|3751492_3751885_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	9.6e-58	84.6
AZE73586.1\|3751886_3752237_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.6e-40	69.2
AZE73587.1\|3752236_3752515_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	6.9e-26	60.6
AZE73588.1\|3752511_3752847_+\|tRNA	tRNA 2-thiouridine synthesis protein TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	4.7e-45	77.5
AZE73589.1\|3752843_3753845_+	Anthranilate phosphoribosyltransferase like	A0A2H4JBY5	uncultured_Caudovirales_phage	1.8e-169	86.6
AZE73590.1\|3753931_3754927_+	Glutathione S-transferase, omega	NA	NA	NA	NA
AZE73591.1\|3755042_3756437_-	Precorrin-2 oxidase	NA	NA	NA	NA
AZE73592.1\|3756437_3757718_-\|tRNA	Seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.3e-98	53.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027757

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection