CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027724	Pseudomonas orientalis strain L1-3-08 chromosome, complete genome	3 crisprs	DEDDh,DinG,csa3,cas3,WYL	1	1	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027724_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027724_1

2236206-2236303

Orphan

Consensus_repeat	Method
CTTGCCCCTGATGGCGGCCTCAGGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027724_1

>merge|CP027724|1|2236206-2236303|CRISPRCasFinder
CTTGCCCCTGATGGCGGCCTCAGGGCCGACCAGGATTTTTGTGTCGATCCCGGTCCAAATGTGGGAGGGGGCTTGCCCCCGATGGCGGCCTCAGGGCC

>CP027724|1|1|2236206-2236303|CRISPRCasFinder
CTTGCCCCTGATGGCGGCCTCAGGGCC	GACCAGGATTTTTGTGTCGATCCCGGTCCAAATGTGGGAGGGGG
CTTGCCCCCGATGGCGGCCTCAGGGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP027724.1\|AZE88766.1\|2233897_2234407_+\|Protein-YciE	unknown	unknown	gnl\|CDD\|226210
CP027724.1\|AZE88765.1\|2232948_2233833_+\|Manganese-catalase	unknown	unknown	gnl\|CDD\|226076
CP027724.1\|AZE88774.1\|2242326_2243658_+\|putative-amino-acid-permease,-GabP-family	unknown	unknown	gnl\|CDD\|129987
CP027724.1\|AZE88773.1\|2241879_2242194_+\|hypothetical-protein	unknown	unknown	unknown
CP027724.1\|AZE88763.1\|2232073_2232256_-\|Uncharacterized-protein-YmdF	unknown	unknown	gnl\|CDD\|226252
CP027724.1\|AZE88762.1\|2231646_2231934_+\|hypothetical-protein	unknown	unknown	unknown
CP027724.1\|AZE88777.1\|2247148_2248318_-\|Zn-dependent-dehydrogenase	unknown	unknown	gnl\|CDD\|176243
CP027724.1\|AZE88769.1\|2237600_2237939_-\|Cytochrome-O-ubiquinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|131894
CP027724.1\|AZE88770.1\|2237940_2238555_-\|Cytochrome-O-ubiquinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|182628
CP027724.1\|AZE88771.1\|2238558_2240532_-\|Cytochrome-O-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|131890
CP027724.1\|AZE88758.1\|2226285_2227455_+\|Glycosyltransferase	unknown	unknown	gnl\|CDD\|340856
CP027724.1\|AZE88764.1\|2232552_2232783_+\|hypothetical-protein	unknown	unknown	unknown
CP027724.1\|AZE88767.1\|2234517_2236092_+\|Signal-transduction-histidine-kinase	unknown	unknown	gnl\|CDD\|237425
CP027724.1\|AZE88775.1\|2243790_2244915_-\|putative-transposase-YagA	unknown	unknown	gnl\|CDD\|366234
CP027724.1\|AZE88760.1\|2228632_2229835_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274539
CP027724.1\|AZE88761.1\|2229831_2231592_+\|Efflux-ABC-transporter,-permease/ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
CP027724.1\|AZE88768.1\|2236737_2237643_-\|Heme-O-synthase,-protoheme-IX-farnesyltransferase-COX10-CtaB	unknown	unknown	gnl\|CDD\|184001
CP027724.1\|AZE88759.1\|2227442_2228636_+\|UDP-galactopyranose-mutase	unknown	unknown	gnl\|CDD\|223636
CP027724.1\|AZE88776.1\|2245121_2246297_+\|Mobile-element-protein	unknown	unknown	gnl\|CDD\|366234
CP027724.1\|AZE88772.1\|2240590_2241457_-\|Cytochrome-O-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|182518

Protein	Function_ID	Function_description	E-value
CP027724.1\|AZE88766.1\|2233897_2234407_+\|Protein-YciE	gnl\|CDD\|226210	COG3685, COG3685, Uncharacterized protein conserved in bacteria [Function unknown].	2.83738e-50
CP027724.1\|AZE88765.1\|2232948_2233833_+\|Manganese-catalase	gnl\|CDD\|226076	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism].	5.36453e-119
CP027724.1\|AZE88774.1\|2242326_2243658_+\|putative-amino-acid-permease,-GabP-family	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.76637e-49
CP027724.1\|AZE88759.1\|2227442_2228636_+\|UDP-galactopyranose-mutase	gnl\|CDD\|223636	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane].	0
CP027724.1\|AZE88763.1\|2232073_2232256_-\|Uncharacterized-protein-YmdF	gnl\|CDD\|226252	COG3729, GsiB, General stress protein [General function prediction only].	0.000686787
CP027724.1\|AZE88777.1\|2247148_2248318_-\|Zn-dependent-dehydrogenase	gnl\|CDD\|176243	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	0
CP027724.1\|AZE88769.1\|2237600_2237939_-\|Cytochrome-O-ubiquinol-oxidase-subunit-IV	gnl\|CDD\|131894	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	1.38065e-32
CP027724.1\|AZE88770.1\|2237940_2238555_-\|Cytochrome-O-ubiquinol-oxidase-subunit-III	gnl\|CDD\|182628	PRK10663, PRK10663, cytochrome o ubiquinol oxidase subunit III; Provisional.	1.05598e-112
CP027724.1\|AZE88771.1\|2238558_2240532_-\|Cytochrome-O-ubiquinol-oxidase-subunit-I	gnl\|CDD\|131890	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	0
CP027724.1\|AZE88758.1\|2226285_2227455_+\|Glycosyltransferase	gnl\|CDD\|340856	cd04950, GT4_TuaH-like, teichuronic acid biosynthesis glycosyltransferase TuaH and similar proteins. Members of this family may function in teichuronic acid biosynthesis/cell wall biogenesis. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	7.53077e-150
CP027724.1\|AZE88767.1\|2234517_2236092_+\|Signal-transduction-histidine-kinase	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	0
CP027724.1\|AZE88775.1\|2243790_2244915_-\|putative-transposase-YagA	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	2.0338e-27
CP027724.1\|AZE88760.1\|2228632_2229835_+\|hypothetical-protein	gnl\|CDD\|274539	TIGR03356, BGL, beta-galactosidase.	3.70122e-09
CP027724.1\|AZE88761.1\|2229831_2231592_+\|Efflux-ABC-transporter,-permease/ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.07005e-142
CP027724.1\|AZE88768.1\|2236737_2237643_-\|Heme-O-synthase,-protoheme-IX-farnesyltransferase-COX10-CtaB	gnl\|CDD\|184001	PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional.	8.83938e-89
CP027724.1\|AZE88776.1\|2245121_2246297_+\|Mobile-element-protein	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.70187e-14
CP027724.1\|AZE88772.1\|2240590_2241457_-\|Cytochrome-O-ubiquinol-oxidase-subunit-II	gnl\|CDD\|182518	PRK10525, PRK10525, cytochrome o ubiquinol oxidase subunit II; Provisional.	6.37521e-135

>CP027724.1|AZE88767.1|2234517_2236092_+|Signal-transduction-histidine-kinase
MATKKTPVVDTVGLAVLSSNRKDPFFAAMQASRSAMIVTDPTQPDNPIVFANPAFLSLTGFEHDEVIGRNCRFLQGPQTDKNTLQQVQRALEQRHEVCVEVLNYRKDGSTFWNELFLSPLFNEHGQLVYFFASQLDVSRRHDAEQRVRRAQDLEALGQLTGGIAHDFNNLLQVMVGYLELIQQSAKRPSCDPQRIFNSAGRARAAAEKAQTLTQQLLAFSRKQRLDSRVINLNTLLNRPDFVSVPQGVDLHVELAEDLWNCRIDPAQAELAVRHLLSNALDALRERSDPTVTVKTLNIQVPGEASAERDGLAEGRYVSISVSDNGHGIAADIQEKVMQPFFTTKEEGQGSGLGLSMVYGFVKQSGGTARIHSYPGIGTTLRLYFPADDSQLWVEQTTVATSLQGHEPILIVEDRPEVAELVQEILSDYGYQTGIAHNAVEALSMLKSATYDLVFSDLIMPGAMNGTALAREVSRLYPRTKVLLTTGYAKDALERTDISVDEFELIQKPYQSADLARKIRAVLDA
>CP027724.1|AZE88766.1|2233897_2234407_+|Protein-YciE
MATPQENLLDWLRDAHAMEQQAEKMLRAQSERLEHYPKLKARIDEHIQETLGQQALIDECLSRLGGSSSTLKDIGGKLMAFGQAVGGSLMSDEVIKGAMAGYVFENMEVASYTVLIAAAQAAGDAETQAACEKILPQEIAMAQWLLEHLPELTQAFLERSAAPDTEAKR
>CP027724.1|AZE88765.1|2232948_2233833_+|Manganese-catalase
MFLHNKRLQYTVRVAEPNPGLANLLLEQFGGAQGELAAASRYFTQALAEDDPGRKDLLMDIATEELSHLEIVGSIIVMLNKGAKGRMAEGVEEEGELYRSLNGAGNDSHITSLLYGAGAPLVNSAGVPWTAAYIDTIGEPTADMRSNIAAEARAKIVYERLMNVTDDPGVRDALGFLMTREIAHQISFEKALHSIQPNFPQGKLPGKPEFTQVYYNMSQGEGNMRGPWNQGDEWEFVENPQPAVDGGDGMASVQLDADDEALLSAMKIRTLSDPTSDPVTGADLGSGMQPKPDL
>CP027724.1|AZE88764.1|2232552_2232783_+|hypothetical-protein
MKHDPSNTQNRPLEPLDNPNEDGCVIGTAGRDEDPNATTDWAHPERPTVPADATVTPPNGTPGIDAIVQADDADAD
>CP027724.1|AZE88763.1|2232073_2232256_-|Uncharacterized-protein-YmdF
MTTGNKNPGNFANDREKASEAGKKGGQASGGNFANDREKASEAGRKGGQHSHGGGRKSGS
>CP027724.1|AZE88762.1|2231646_2231934_+|hypothetical-protein
MKKSEKEMEIQAWHLLLEDDAYRLDWPDDFYRTLINRADELVLREVISLEEWQRLKDAADRVHAQTLHHLAAQQRDRVDTVSIDLCIDTAESTQR
>CP027724.1|AZE88761.1|2229831_2231592_+|Efflux-ABC-transporter,-permease/ATP-binding-protein
MIFRRLRDEPLPATASAFLWRYVRVRPVHFGAMLSLVIGAACCAVAVQYGMKLLVDAMAGDSQAGQVWRAFSLFIGLIVVENLLWRLGGWVGCYTVVGSCADLRVDLFHHLTGHPMRYFNRHFAGALANRVSAAAGAANTVYGGLAWRIVPPCVDFLGAVVVLFTVHGAMAMALILCVVLVAALITVVGVRGRHRHIAFASQSARVGGEIVDLVSNVWTIKAFSARERERLRLEREIGVEAGAHRRSWLYLEKARVLHDVCLSIMAGAMLGWAILLWHQAQITAGDVVMVSALTFRILHGSRDLALALVEASQQMGVIAETLGIIAQPHELSDTPQELAPTRGNIRLLDVSYAYPGGRPVFRHLFLEIAAGQSVGIVGTSGSGKSTLLGLLQRLDDVNSGVILIDDRDIRSVSQDSLRRQIAVVPQEPALFNRSILENIGYGQPHASEQQIVEAARRAFCDEFVQALPDGYHTLVGERGVTLSGGQRQRLGLARAFLKDAPVLILDEATSALDSDSEAVIQCALMDLMRGRTVIAVAHRLSTIANFDRVLVLEQGEIVQDGCPDQLRRHQGRFRTLWQRQALIREA
>CP027724.1|AZE88760.1|2228632_2229835_+|hypothetical-protein
MNAQPQHGPCPSGEREHLSLFASFVMAGYECSSQRRQDGRRLDLLADTGHARWAHKDYRQLAGLNVRCARDGLRWHLIERSPGRYDWSSLLPMLRAAREHSLQVIWDLCHYGYPDDLDLWRPCFVERFARFAGAVAKLMKEEGIERPFYSPINEISFWSWAGGDVGYFNPNARGRGQELKHQLVRASIAAIEAIREHAPAARFVQCDPLIHVVPASRRSEDIADAEQYRLAQFQAWDMLTGRQWPGLGGQEHYLDIIGANFYPHNQWYFQGGRIAQGAPDYRPLAGMLKELHQRYQRPLLISETGAEDQARVPWLNYVVDQVLIALRRGVPVQGICWYPFLDYPGWDDGRYCPTGVFGYPDGEGERASFHPLHVQLAAVPERVRACLHELDRLRAPGQPS
>CP027724.1|AZE88759.1|2227442_2228636_+|UDP-galactopyranose-mutase
MPQIILETATSGPSCQPARSAYDYLIVGAGFAGSVMAERLAEGLGRHVLLIDRRAHVAGNAYDHYDAAGVLVHRYGPHIFHTNAQRIVDYLSRFTQWRPYEHRVLAKVDGQLVPIPINLTTLNTLYGLSMSPEQAEVFLAERAEPVATIRTSEDVVVNQIGRTLYEKFFRGYTRKQWGLDPSELDKSVTSRIPTRTVADDRYFTDSFQMMPRDGYTRLFERMLDHPRIDLLLNTDFKAVREVVKFKHVIYCGPIDEYFDFQLGRLPYRSLRFEHQTLEQERYQPVAVVNFPEPQVPYTRITEYKHLTGQEHPCTSISYEFPCDEGDPYYPVPRPENAELYKRYKALAQQTPNVTFLGRLGTYKYYNMDQVVGQALALYRDIEAASSAVAVDAGLAAR
>CP027724.1|AZE88758.1|2226285_2227455_+|Glycosyltransferase
MNLAEQPEQFAAVSAQSLLESPTPARPTLVCLSHLRWGFVYQRPQHVMSRLAKDYDVIFFEEPVVAGDEPPHLEVSSPADGVQVLVPRLPEGLDAHAMIEAQRQLLDERLARRLPGDLLLWYFTPMSLAFTDHLQAQVTVFDCMDELSAFMGAPAELVERERQLLARADVVFTGGVSLWEVKQRQHGNAHPVPSSVDIAHFAQAREALAEPADQAAIARPRLGFFGVIDERFDIDLVAQVAAMRPHWQIVLVGPVVKIDPQTLPRRPNIHYLGARHYAELPTYLSGWEVALMPFALNASTRFISPTKTPEYLAGGCPVVSTPIRDVVNGYGRSGAVFIADTAQAFVAAIEDALRLKGTPDFLQRADAALEGMSWDNTCRFMKEQIQCLR
>CP027724.1|AZE88768.1|2236737_2237643_-|Heme-O-synthase,-protoheme-IX-farnesyltransferase-COX10-CtaB
MDHGQYSSQHAGALKHWLGLFNAGIQLTKPGIIFGNLASVLGGYFLAGRGHLAEPAHLLATLLGTALVIGCGCVINNCVDRDIDRRMVRTCHRALALRTITVPTAASYAIALGVAGFGLLWAGSNLLACFLAMVGLVIYAGVYTYWLKRRSHWATLIGSLSGAMPPVIGYCAVTGRFDATAVLLIVVFCCWQMPHSHAITVMRREDFRAARLPLLSLPEAYRQIQAYILAFLASSLVLGVVAQMHAVYFALMLGLCGYWMTLAASATRLTDSPGWARKVFGFSILLVLALNLSLAVMGQAS
>CP027724.1|AZE88769.1|2237600_2237939_-|Cytochrome-O-ubiquinol-oxidase-subunit-IV
MYKQSSIHSSAGTSHGSSRSYLVGFLVSVLLTLIPFGLVMFPSLPRVTTAWLVVALGAIQIVVHLKFFLHLDTAEEQRWNLIALIFSAVIILLLVGLSLWIMGSIHHNMLAH
>CP027724.1|AZE88770.1|2237940_2238555_-|Cytochrome-O-ubiquinol-oxidase-subunit-III
MSNIVIEKDIAHTHEQGHEDAGSLSLFGFWIYLMTDCILFATLFAGYAVLRDSVAGGPSSVDIFELPYVLGETMLLLLSSITYGYAMLAMNRGQQSQVLRWLGLTFVLGAGFIAMEINEFHHLIVEGYGPDRSAFLTAFFTLVGTHGAHVLTGLIWMAVLMVQVRQKGLTNTNATRLSCLSLFWHFLDVVWICVFTVVYLLGVV
>CP027724.1|AZE88771.1|2238558_2240532_-|Cytochrome-O-ubiquinol-oxidase-subunit-I
MFGKLSWDAIPTTEPIVMYTLAFIGLIGVAMVGTITWKRKWGYLWREWFTSVDHKKIGCMYIIVALVMLLRGFSDAIMMRTQQAMAASGGPGYLPPEHYDQIFTAHGVIMIFFVAMPFVVGLMNVVVPLQIGARDVAYPFLNALSFWLFVVGAALVNVSLGIGEFARTGWVAYPPLSELGYSPGVGVDYYIWSLQISGIGTLLTGVNFFVTILKMRTEGMTLFKMPVFTWNALCTSVLILASFPILTATLLMLSLDRYLGMHFFTNEAGGNPMMYVNLIWAWGHPEVYILILPAFGVFSEIAATFSSKRLFGYVSLVWATIAITVLSFIVWLHHFFTMGAGGNVNAFFGIMTMIIAVPTGVKIFTWLFTMYRGRVRFETPMLWTLGFIVTFSIGGMTGVLLAVPGADFLLHNSLFLIAHFHNVIIGGAVFGYMAGLTYWFPKAFGFRLNDKLGRIAFWCWLVGFYLAFMPSYVLGFMGMTRRLNHFDNPEWRPWLLVELVGVGVILCGVAAQALQLFVSIRNRHQYRDLTGDPWDGRTLEWATSSPPPLYNFAEQPKVNDLDAYWGMKERGVSTLSHTDYRAIHMPRNTASGLVISLFALICSFALVWHIWWLAAFGLVASVVAFVVRSYDEDTDYFVPAQEVARIETARLKDLEEA
>CP027724.1|AZE88772.1|2240590_2241457_-|Cytochrome-O-ubiquinol-oxidase-subunit-II
MKRTIAYCLASLASLFLLTGCNLVVFNPKGQVATDERDLIILATGLMLLVVVPVIVLMFVFAYRYRATNKNARYSPRWASSHKIEAVVWGVPLLIIIALGWVTWETTHALDPYRPLDSDTPPINVQVVATDWKWLFIYPDLGIASVNELALPVHTPVSFTITSDAAMTSFFIPALGGQIYAMAGMQTKLHLIANETGEFRGIAANYNGPGFSDMHFAALSLSPTDFQTWVTKVKGASKPLDHTSYAQLAKPTIKHPVTYYSAVRERLFLDIVDKYEGMNKANKTRRAP
>CP027724.1|AZE88773.1|2241879_2242194_+|hypothetical-protein
MFIRGNTYKAWAEKALEEECFTQEVENGCHIEVRAREREDADIEVLVSVYTATGQCVVERTRQLPGAEWTVHDALKRGIDQAERIAGGESGRLPCADAHLPDDD
>CP027724.1|AZE88774.1|2242326_2243658_+|putative-amino-acid-permease,-GabP-family
MSESSLSQAEPSKPSLRRAVTGPMLFLFILGDVLGAGVYALAGTIAGQVGGAIWVPLLVALFFAMLTAGSYAELVTKYPHAGAASVFAEKAFKSPLISFLVGFCMLAAAVTSAAGLSLAFAGDYLAAFIDVSPHVAALVFLLVIALLNARGIKESLGANMVMTCVELSGLLLVVVAAAWCFQSGEANLERAFEFKPGINPMLAVLGAALLAFYSFVGFETSANLAEEIRGVRKVYPRALFAALIVAGIVYMAVGVAASVVLPMDKLTATSAPLLEVVRASGLNIPPQLFAFIALVAVANGALLTMVMASRLTFGMARMGLLPEPLSRVLPKRRTPWVAIIASTAVAIALTLTGTLAALAETVVLLLLFVFLSTNLAVLVLRRDRIEEKHFRVPSWVPVLAIVSCLILLSQQSLDTWLRGGALIVLGMVLYGCNRLVAPAVQAG
>CP027724.1|AZE88775.1|2243790_2244915_-|putative-transposase-YagA
MPWNTRDTMSLKEEFIALAQQPGSNKRELCRRFGISPQTAYKWLKRYEAHGQSGLQEKSRKPATSPRLTTAALEAQIVALRQDHPAWGGRTISSLLKKQIAPSTVTNVLHRHGLIQPSQKEQEAKLRFEHEAPNDLWQMDFKGHFPTQEGRCHPLTMLDDHSRFNLAIQACDNERGATVKEKMIEVFQRFGLPARINVDNGPPWGSPRNPGEITELSIWLIRLGIRISFSRPYHPQTNGKIERFHRSFKAEVLDGRNFSTTKEAQKAFDQWREIYNLQRPHQALDYKVPMDRYRSSPWAYPQQLLEFEYGPDDVMAKAYHSRFRFQKRYFSIAKGLAGLHIAIRPNPETDGFFDVYFCHHFLRTIDVSKPDYGP
>CP027724.1|AZE88776.1|2245121_2246297_+|Mobile-element-protein
MPWRELKPMDLKVMFIAEYLSEKHSFSQLCQDYQISRKTGYKWVERYQLEGPSGLDERSRRRHSQTYVVPVVVRQAIIELRSAGETIPGPKKIQNDLMKRFPGQDPPSKTTIYNILKAADLITPRSSRQRVAVYPKPLRKAETPNQLFSADYKGQFLTGAGVWCYPLTFMDHASRFLLACESMANTNLKETQQTFERVFREYGMPERIRTDNGVPFASTGRAGLSQLSIWWLRLGIIPERIEPGRPDQNGRHERMHRTLKSTFPQPPAIAWEAQQKHFDRFMQHYNYERGHEALGQKTPASCYTPSTRSYPEKLPEMVYASHVECYLADGSGIINRAGLRIYVGNLLRHQNIGMELIKDGVWNVIFGPVILGHVNARDAKNGYVSIKVSPM
>CP027724.1|AZE88777.1|2247148_2248318_-|Zn-dependent-dehydrogenase
MRALTWQAPNLLQVDNVPDPTILNPRDAIIRVTLSSVCGSDLHLLGGYVPAMKPGDIIGHEFMGEVVEVGKGITDLRQGDKVVTISIIGCGNCEPCQRSDFSCCDNSNPNPSATDLMYGQPCCGILGYSHAFGGYPGSHATYVRVPFADVNLFKVPEGVSDEQALFVSDAAPTGYFAADNAGIQPGDTVAVWGCGGVGQMAICSAYLLGAERVIAIDRYPDRLRLAEERGKAIPLNYEKTNVHEALLELTGGRGPDRCIDCVGMEAHGTEIDYAYDKAKQLLRLHTERGTVLRQAIRACRKGGTVSVVGVYGGVLDKFPMGAIVNKALTLKSGQQPGQRYATTLFEHIQRGELDPAYLLTHPMSLEDGAQGYKLFKEKSDECLRVVFRT

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Crispr_ID: CP027724_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027724_2

2363273-2363379

Orphan

Consensus_repeat	Method
AATGTGGGAGGGGGCTTGCTCCCGATGGCGGCCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027724_2

>merge|CP027724|2|2363273-2363379|CRISPRCasFinder
AATGTGGGAGGGGGCTTGCTCCCGATGGCGGCCTCTCAACCGACGGGTATCGATCTGACACACCTCGGTCCAAATGTGGGAGGGGGCTTGCCCCCGATGGCGGCCTC

>CP027724|2|2|2363273-2363379|CRISPRCasFinder
AATGTGGGAGGGGGCTTGCTCCCGATGGCGGCCTC	TCAACCGACGGGTATCGATCTGACACACCTCGGTCCA
AATGTGGGAGGGGGCTTGCCCCCGATGGCGGCCTC

Protein	Signature genes	Signature genes Name	Protein_function
CP027724.1\|AZE88881.1\|2366773_2368735_+\|sigma-54-dependent-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226350
CP027724.1\|AZE88882.1\|2368921_2369971_-\|Transcriptional-regulator,-LacI-family	unknown	unknown	gnl\|CDD\|380530
CP027724.1\|AZE88877.1\|2362435_2363263_+\|Glutathione-S-transferase	unknown	unknown	gnl\|CDD\|183298
CP027724.1\|AZE88883.1\|2370133_2371234_+\|MocD	unknown	unknown	gnl\|CDD\|239588
CP027724.1\|AZE88885.1\|2371584_2372787_+\|Ferredoxin-reductase	unknown	unknown	gnl\|CDD\|170080
CP027724.1\|AZE88878.1\|2363874_2364801_-\|Sugar-ABC-transporter,-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380524
CP027724.1\|AZE88884.1\|2371264_2371585_+\|Naphthalene-1,2-dioxygenase-system-ferredoxin-component	unknown	unknown	gnl\|CDD\|131430
CP027724.1\|AZE88872.1\|2356884_2357853_+\|L-arabinose-transport-system-permease-protein	unknown	unknown	gnl\|CDD\|183076
CP027724.1\|AZE88875.1\|2360113_2361103_-\|Transcriptional-regulator,-AraC-family	unknown	unknown	gnl\|CDD\|225117
CP027724.1\|AZE88873.1\|2357967_2359116_-\|Aldose-1-epimerase	unknown	unknown	gnl\|CDD\|185696
CP027724.1\|AZE88886.1\|2372788_2373676_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366542
CP027724.1\|AZE88879.1\|2364819_2365599_-\|Hydroxypyruvate-isomerase	unknown	unknown	gnl\|CDD\|226149
CP027724.1\|AZE88871.1\|2355372_2356875_+\|L-arabinose-transport-ATP-binding-protein-AraG	unknown	unknown	gnl\|CDD\|183077
CP027724.1\|AZE88887.1\|2374626_2375172_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227915
CP027724.1\|AZE88870.1\|2354371_2355376_+\|L-arabinose-binding-periplasmic-protein-precursor-AraF	unknown	unknown	gnl\|CDD\|380482
CP027724.1\|AZE88868.1\|2351752_2353333_+\|2,5-dioxovalerate-dehydrogenase	unknown	unknown	gnl\|CDD\|143447
CP027724.1\|AZE88869.1\|2353369_2354233_+\|L-arabinolactonase	unknown	unknown	gnl\|CDD\|369882
CP027724.1\|AZE88880.1\|2365595_2366600_-\|Myo-inositol-2-dehydrogenase	unknown	unknown	gnl\|CDD\|275173
CP027724.1\|AZE88874.1\|2359254_2360022_+\|3-oxoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|212491
CP027724.1\|AZE88876.1\|2361164_2362391_+\|putative-MFS-type-transporter	unknown	unknown	gnl\|CDD\|182309

Protein	Function_ID	Function_description	E-value
CP027724.1\|AZE88881.1\|2366773_2368735_+\|sigma-54-dependent-transcriptional-regulator	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	1.6133e-156
CP027724.1\|AZE88882.1\|2368921_2369971_-\|Transcriptional-regulator,-LacI-family	gnl\|CDD\|380530	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.	1.1668e-79
CP027724.1\|AZE88877.1\|2362435_2363263_+\|Glutathione-S-transferase	gnl\|CDD\|183298	PRK11752, PRK11752, putative S-transferase; Provisional.	0
CP027724.1\|AZE88883.1\|2370133_2371234_+\|MocD	gnl\|CDD\|239588	cd03511, Rhizopine-oxygenase-like, This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.	5.27185e-138
CP027724.1\|AZE88885.1\|2371584_2372787_+\|Ferredoxin-reductase	gnl\|CDD\|170080	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional.	1.93087e-79
CP027724.1\|AZE88878.1\|2363874_2364801_-\|Sugar-ABC-transporter,-substrate-binding-protein	gnl\|CDD\|380524	cd06301, PBP1_rhizopine_binding-like, periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type 1 periplasmic binding protein superfamily.	1.80443e-117
CP027724.1\|AZE88884.1\|2371264_2371585_+\|Naphthalene-1,2-dioxygenase-system-ferredoxin-component	gnl\|CDD\|131430	TIGR02377, putative_Rieske-like_ferredoxin_MocE, Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].	1.04103e-52
CP027724.1\|AZE88872.1\|2356884_2357853_+\|L-arabinose-transport-system-permease-protein	gnl\|CDD\|183076	PRK11285, araH, L-arabinose transporter permease protein; Provisional.	9.50038e-173
CP027724.1\|AZE88875.1\|2360113_2361103_-\|Transcriptional-regulator,-AraC-family	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.34847e-26
CP027724.1\|AZE88873.1\|2357967_2359116_-\|Aldose-1-epimerase	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	0
CP027724.1\|AZE88886.1\|2372788_2373676_+\|hypothetical-protein	gnl\|CDD\|366542	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.	5.2117e-05
CP027724.1\|AZE88879.1\|2364819_2365599_-\|Hydroxypyruvate-isomerase	gnl\|CDD\|226149	COG3622, Hfi, Hydroxypyruvate isomerase [Carbohydrate transport and metabolism].	1.69903e-85
CP027724.1\|AZE88871.1\|2355372_2356875_+\|L-arabinose-transport-ATP-binding-protein-AraG	gnl\|CDD\|183077	PRK11288, araG, L-arabinose ABC transporter ATP-binding protein AraG.	0
CP027724.1\|AZE88887.1\|2374626_2375172_+\|hypothetical-protein	gnl\|CDD\|227915	COG5628, COG5628, Predicted acetyltransferase [General function prediction only].	2.66416e-15
CP027724.1\|AZE88870.1\|2354371_2355376_+\|L-arabinose-binding-periplasmic-protein-precursor-AraF	gnl\|CDD\|380482	cd01540, PBP1_arabinose_binding, periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such as LacI and GalR.	6.03082e-113
CP027724.1\|AZE88868.1\|2351752_2353333_+\|2,5-dioxovalerate-dehydrogenase	gnl\|CDD\|143447	cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.	0
CP027724.1\|AZE88869.1\|2353369_2354233_+\|L-arabinolactonase	gnl\|CDD\|369882	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region. This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE.	1.95689e-82
CP027724.1\|AZE88880.1\|2365595_2366600_-\|Myo-inositol-2-dehydrogenase	gnl\|CDD\|275173	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase. All members of the seed alignment for this model are known or predicted inositol 2-dehydrogenase sequences co-clustered with other enzymes for catabolism of myo-inositol or closely related compounds. Inositol 2-dehydrogenase catalyzes the first step in inositol catabolism. Members of this family may vary somewhat in their ranges of acceptable substrates and some may act on analogs to myo-inositol rather than myo-inositol per se. [Energy metabolism, Sugars].	1.18019e-115
CP027724.1\|AZE88874.1\|2359254_2360022_+\|3-oxoacyl-ACP-reductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.04676e-66
CP027724.1\|AZE88876.1\|2361164_2362391_+\|putative-MFS-type-transporter	gnl\|CDD\|182309	PRK10213, nepI, purine ribonucleoside efflux pump NepI.	4.56353e-91

>CP027724.1|AZE88877.1|2362435_2363263_+|Glutathione-S-transferase
MADYVPPKVWTWDAESGGTFASINRPVAGATHEKALPVGKHPLQLYSLATPNGQKVTILLEELLALGHTGAEYDAWLIKIGDGDQFGSGFVGVNPNSKIPALMDHSGAAPIRVFESGAILQYLAEKFGAFLPSEPAARAECLSWLFWQMGSAPYLGGGFGHFYAYAPSKMEYPINRFAMEAKRQLDVLDKRLAVSEYIAGDEYTIADIAIWPWYGGLVKGRLYGAAEFLSVHEYKHVLRWADAIDARPAVQRGRRVNRVSGDDQLAERHDASDLD
>CP027724.1|AZE88876.1|2361164_2362391_+|putative-MFS-type-transporter
MTDCAARAPAGMVAEPAWLAVFSLAMGVFGLLTAEYLPASLLTPMALDLGVTEALAGQAVTVTAVVALFAGLLVPGLTRGIDRRIVLLGFSTLMIASNLLVALSSSLTVLLLMRILLGIALGGFWSMAAAVAMRLVPAASLPRALSIIFSGIALGTVVAVPLGSYLGGLYGWRSAFIAAAAVGLVTLAFQSFTLPRLAPNGTARLRTVLHVLQRPGIAMGMFGCVLVHTAHFALFTYIRPFLESTTGVGTEGLALMLLGFGVANFAGTLFAGWLLVRHPRATLVLMPVLVGIAALALVWLPASLPTQALLLALWGMAFGGVPVAWSNWVARAVPDQAESAGGMVVASVQSAIAAGAAGGGLMFSVSGIGGVFVGAGVLMLLAALLIALRVQVPGQEGDLGVTRHQSLV
>CP027724.1|AZE88875.1|2360113_2361103_-|Transcriptional-regulator,-AraC-family
MMQNLESLTETPNMTAVDAFTASSDLINELLRGMRLRGVQYRRIQAGPTFGIGFDAKPGHAYFHFLAAGNATLRAEDGSLFALSAGNAVFVSHGGAHALLSEADAAVQDISHFDSAPLGDTVCAVDASPDTVPDRLLFSACMEFELGSLQGLGNLMPALMLIDTAGQRYPGLMPILAVMEREVSTARMGYAGILARLADVVAAMMVRGWVECACGNASGLAAALRDPRLARALLALHQQPGHDWSVAQLADQCHTSRSVFADRFQAVLGVPPLRYATQLRMRLASQWLTLERMPIETVAQRLGYTSQAAFSRAFKRITGQPPGAARRST
>CP027724.1|AZE88874.1|2359254_2360022_+|3-oxoacyl-ACP-reductase
MSTEHALYPDLKGKTVLISGGASGIGEFMVRAFAAQGAKVAFVDRAQSQGERLAALLNSKGHTVEFECCDITDEIGYRAAIGRFEHSLGPITVLVNNAANDVRHSLEEIDSDMFDRLIAVNLKHAFFAAKAVVPMMKHEGGGSIINLGSVGWMMASAGYPVYAASKAAAHGMTRGLARELGPHRIRVNTLVPGWVMTEKQLSMWVDDAARELIARSQCLPGSVMPEHIANMALFLASDASAMCSAQNFIVDGGWV
>CP027724.1|AZE88873.1|2357967_2359116_-|Aldose-1-epimerase
MKHPRYLLSGLALSMLIASGGAQAAGLSSEHKPFGKTNDGTPVEQYVLRNSHGMQATVITYGGVLQSLKVPDKHGKVDDVVLGFDDVQGYQAGTAFFGATIGRFGNRLAGGAFELDGKRYQVPLNDGPNSLHGGAQGFDKQVWKAESVKDKDSVGVKLSYLSKDGEMGFPGNLKTEVTYRLNDKNELHIDYTATTDKPTVLNLTNHSYFNLAGAGNGDILKQVATLHASHYTPVNATLIPTGELAPVKGTPMDFLKPTAIGQHIKDDHPQLKFAEPKQGGFDFNWALDTKGDVKQLAAEVHDPESGRRLQLYTSEPGVQFYTSNFLDGSVKGKGGKTYLHWSGFTLETQHFPDAPNQPTFASTRLNPGQTYTQNTVFKFSAD
>CP027724.1|AZE88872.1|2356884_2357853_+|L-arabinose-transport-system-permease-protein
MTIQENALPPARKPLDLRALLDNWAMLLAAVGIFVLCALLIDNFLSPLNMRGLGLAISTVGIAACTMLFCLASGHFDLSVGSVIACAGVVAAIVMRDTDSVMLGIGAALLMGLMVGLINGIVIAKLRVNALITTLATMQIVRGLAYIFADGKAVGVSQDQFFVFGNGQLFGVPVPILITIVCFLFFGWLLNYTTYGRNTMAIGGNPEAALLAGVNVDRTKILIFAVHGLIGALAGVILASRMTSGQPMIGQGFELTVISACVLGGVSLSGGIGMIRHVIAGVLILAIIENAMNLKNIDTFYQYVIRGSILLLAVVIDRMKQR
>CP027724.1|AZE88871.1|2355372_2356875_+|L-arabinose-transport-ATP-binding-protein-AraG
MTAAALRFDGIGKTFPGVKALDGISFTAHPGQVHALMGENGAGKSTLLKILGGAYIPSSGTVQIGEQTMAFKCAADSIASGVAVIHQELHLVPEMTVAENLFLGHLPSRFGVVNRSLLRQQALACLKGLADEIDPEEKLGRLSLGQRQLVEIAKALSRGAHVIAFDEPTSSLSAREIDRLMAIITRLRDEGKVVLYVSHRMEEVFRICNAVTVFKDGRFVRTFEDMSALSHDQLVTCMVGRDIQDIYDYRPREHGDVALKVDGLLGPGLREPISFNVRKGEILGLFGLVGAGRTELFRLLSGLERASAGNLELCGEPLQLRSPRDAIAAGVLLCPEDRKKEGIIPLSSVAENINISARGAHSAFGWLLRDGWEKGNAEHQIKAMKVKTPNAAQKIMYLSGGNQQKAILGRWLSMPMKVLLLDEPTRGIDIGAKAEIYQIIHNLAAQGIAVIVVSSDLMEVMGISDRILVLCEGAMRGEQLRAHATESNLLQLALPRSLAN
>CP027724.1|AZE88870.1|2354371_2355376_+|L-arabinose-binding-periplasmic-protein-precursor-AraF
MNRRRGLRSLCCAAVAVSAMGLSGLLLAAEEVKIGFLVKQAEEPWFQTEWAFAEKAGKEHGFTVIKIAVPDGEKTLSAIDSLAANGAKGFVICPPDVSLGPAIVAKAKANGLKVIAVDDRFVDAKGAFMEDVPYLGMAAFEVGQKQGAAMAAEAKKRGWDWKDTYAVINTFNELDTGKKRTDGSIKSLEEAGIPKDHILTAALKTLDVPGSMDATNSALVKLPSGAKNLIIGGMNDNTVLGGVRATESAGFKASNVIGIGINGTDAIGELKKKESGFFGSMLPSPHIEGYNTALMMYEWVTKGTEPPKYTAMDEVTLITRANFQEELTKIGLWK
>CP027724.1|AZE88869.1|2353369_2354233_+|L-arabinolactonase
MSFHAVTAHRAQLGEGPFWDAPTQALYWVNIAGKQALRLMDGQLRIWQLPEHVSAFIPCESGDALVTLSSGVYRLDLATEALTLLCVADLQAGNRGNEARCDAQGRLWLGTMQNNIGEQGEDLPITRRSGGLFRIDADATVTPLLSGLGIPNTLLWNEDGSQVHFGDSLDGTLYRHGVQEDGQLHPAKVWFGPHERGGPDGSAMDAHGYIWNARWDGSCLLRLAPDGQVDRIIELPVSRPTSCVFGGPNLTTLYITSAASPLDHPLDGAVLAIEVDVPGKPCTRFAG
>CP027724.1|AZE88868.1|2351752_2353333_+|2,5-dioxovalerate-dehydrogenase
MTQFLGHNFIGGQRSANGSVKLQSVDATTGEALPQDFYQATPEEVDAAAKAAAQAYPAYRALSAARRAQFLDAIADELDALSDNFVELVCRETALPAARIKGERGRTSGQMRLFATVLRRGDFYGARIDKALPDRQPLPRPDLRQYRIGLGPVAVFGASNFPLAFSTAGGDTAAALAAGCPVVFKAHSGHMATAEQVANAIIRAAEATEMPAGVFNMIFGGGVGEALVKHPAIQAVGFTGSLKGGRALCDMAAARPQPIPVFAEMSSINPVIVLPQALTARAESVARDLTASVVQGCGQFCTNPGLVIGIASPEFTAFTQQVAQLIGEQPAQTMLNAGTLGSYGKGLEKLLSHSGIEHLAGSAQSGNQAQPQLFKADVRLLIDGDEVLQEEVFGPTTVFVEVADQAQLSAALHGLHGQLTATIIGEPADLQQFVELTPLLEQKVGRILLNGYPTGVEVCDSMVHGGPYPATSDARGTSVGTLAIDRFLRPVCFQNYPDSLLPDALKNANPLRIQRLVDGAPSRESL
>CP027724.1|AZE88878.1|2363874_2364801_-|Sugar-ABC-transporter,-substrate-binding-protein
MHRYSLIVATLLLLFSQSSFAAYRIGVSIARVDDNFMTYVRTGLEAAATQQDVQIQFEDAQGDVVRQLNQVEGFLNQNVDAVIVLPVDTAATANITRAAVANKTPLVYVNRHPDERTLPKGVVTVASNDIEAGQLQMRYLAQKLGGKGNVAIIMGDLAQNATRDRTEGARQVLKDFPGIRIVEQQSAEWQRSKAMDLTSNWLLAGTQFDAIVANNDEMAIGAAMALQQAGKAKGEVAIVGIDGLPDGLAAIRRGVLSASVFQDPKAQATQAVQAAVRMIKGEPIEPEVWVPFELIKPEQVAVFEQRYK
>CP027724.1|AZE88879.1|2364819_2365599_-|Hydroxypyruvate-isomerase
MIPFKLAVSAEMVFLDLPFVERVKRIHALGFSAEIWSWADKDINALAATGADFTSMTGYISGTLTDPDGVRHLLDSARESLRVAERLNCPSLNLHGTGLGEGGLPVQPVSRTTGRMWLSACKTLEKIARLGEDAGRVFLLENLNTEVDHPGTPFARADDTLALIEAVGSAHLKMNLDLYHAQIGEGNLIELIQRAGPAIGEIQVADVPGRQEPGTGEIHYPAIARALHAMGYSGVVGLEGWASGDSDRALERFRQAFTL
>CP027724.1|AZE88880.1|2365595_2366600_-|Myo-inositol-2-dehydrogenase
MNTKHIRLGLIGAGRMGSFHGLTAARHIPGACLTAIADPTPGQAARLAAELGVDKVYTDPQQLLEDPDIDGILIAAPARSHAELVISAARAGKGIFCEKPMAITLEEADRAIAAAADARVTLQVGFNRRFVKSFRSAHLDVAAGRIGTPQLLRSLTRDPALNNPGASPQWVIFLETLIHDFDTLRYLNPGAEAVQVQVMADALIAPEYKSRGLLDTAVVTIRFDNGAIATAEASFQAVYGYDVRGEVFGSAGMLTMGGVQASDLVRYQAQGIQADTQRLDTDLLRDAYIAELNHFVDCLRSGATPLASGEDARAALAIARACIESYEQGTAVSL
>CP027724.1|AZE88881.1|2366773_2368735_+|sigma-54-dependent-transcriptional-regulator
MSVAISAQDLDYLTALGPAALNDGPVAALEQAWQACLRGQVQRPPEVRQTIWDSWRRSAEAGIDPADNAYRFVVADRLTVTLARHRVLIDAAAQVMQGLLAYNPRGHINLTDAHGTTLYFCGLDITPVGSRLLESVQGTNCTGLALAEDHLVYVLAEENFAVGLRQRRMHCAAAPIKNAQGQTVAVLTLTAEPGWFHFHTLGTVQAAAEAVSRQMALQALLEEQQTVLEVLNEGLVVVDERGCIKALNRYARQLFGVGLELIGSPFQHLGRSELSEALGEAVRDLDCTFQLQDRSQLACLVSVCPLEQGGVIVSLRENRRIREITRRLVGTQARYTFDTIQGTSQAIQDALRLGHIASRSDSTTLILGESGTGKELFAQAIHNASERCNGPFVAVNCGAIPRDLVQSELFGHVEGAFTGSARGGSAGKFELADGGTIFLDEIGDMSFDAQVSLLRVLQEGEVARVGAKSARQVDVRIIAATHRNLSQAVADGAFREDLYYRLNVLNLTVPPLRMRRDDIPLLARHFLKRCARSLRKTVQGFAPDALALLCAHAWPGNVRELENAIERATNLAVGELIQPGDLPLDSKPRALAHVYAPQPTQDLSSHEMHAIVAALKSTGGNIRLAARQLNVSRGGLYNKMNRFGLNAGDFRGL
>CP027724.1|AZE88882.1|2368921_2369971_-|Transcriptional-regulator,-LacI-family
MTNHKRPTIATVAAHAGLSVATVDRVLNARAPVNPQTAEQVFQAAEAVGYFAARLIGQRIRERRPTYRFGILLLGTAQAFYANLAQSIGDAAQHHATANLTCQFDYINDRTPSAIVAQIEQLAVQCDALAVVSFAHPLINACLAQIRAAGVPVVALLSDIHEQAQEPYVGQDNHVVGRTMGWLLARTCGARKGSVGILLGGHRFLGHQARVEGLHSYLAEHAPGIKPLEPLINLDNCDITEEATLDLLSRHTDLRGLCVVGGGGDGVINALAQLPKRPALCCILQESTALSRQALSRGLIDVVMDSQPRQTAVALVELLVQLQSAEGFDALRHRVHIPPHIVTSENMGN
>CP027724.1|AZE88883.1|2370133_2371234_+|MocD
MPEYTAHRARRARRDYSLTGPEAARAAEKGLVSARWYQSPVPRKRMKELMQRRDGPALVDTAIWFAALFATGFGGYWFWGSWACVPFFLVYGVLYGTASNPRWHETGHGTAFKARWMNDALYQVASFMCIFEPHVWRWSHARHHTDTIVVGRDPEIVEPRPPSFLMMFLSLFNLPLAWKTCSGVARHAIGRMSAQERDFIPESEWPKVFRAARIWVGLYALIIGSALYLHSWLPLMLVGLPSIYGAWLGYLFGLTQHVGLAEDVLDHRSNCRTIYMNRVLRFIYMNMNYHLEHHMYPMVPYHALAQLHEEIRRDCPPPYANLWEAYKEILPTVWKQRSDPTYFVQRPIRRQPESAPASVHAEVSAG
>CP027724.1|AZE88884.1|2371264_2371585_+|Naphthalene-1,2-dioxygenase-system-ferredoxin-component
MNDQWIDVCAVGDIDEEDVLRFDHGAHTYAVFRSVENEFFATDGLCTHEKIHLADGLVMDHVIECPKHNGRFDYRSGEALGAPVCVNLKTYPVRVEAGRVLLAVTA
>CP027724.1|AZE88885.1|2371584_2372787_+|Ferredoxin-reductase
MMNAPLIIVGAGHAGGRAALTLREEGYSGRLILIGDEPHVPYERPPLSKGLLQGSQDLAGCSLCDNARLAELGIEHIAGNAVSRLAPPQHRLQLADGRWLPYSGLLLATGGRARRLPQAQCNVLYLRTHDEALALREQLRPGTRLVVIGGGFIGLEVAATARGLGCAVTLLEAGPRLAGRVLPAIISDALLALHREQGVDVRLNVAVASIEAQNVHLADGQTLPCDLVVVGIGMQPNLELAAAAGLEVGQGIRVDAQLRTSAADIYAAGDVCEFRLGGLYQRQETWRNAEAQGRHAALNLLGRALPFEALPGFWSDQYDWGLQTVGVMTPSVVSRPLPDGGLLLFYLDDHGLLQGACGWAPGNRVARDIKLCERLIAARVPLSSAALADPAVSLKQWLRG
>CP027724.1|AZE88886.1|2372788_2373676_+|hypothetical-protein
MRQLLVFQSLWAMQTEPGPLDAQLDRIAAAGFDGITDHYWQAADVARLHAATAARGLQIEGQLFPQTVDDLARALEVISRYGCHHFTLQADVRPRTQAEAGRLIEGWQRLAEQVDFPILLETHRYRLTSDLLFTLDLLAQMPDLKLLADLSHYVVGRELPEPGGADDDEQIRTILRHSWGFHGRVASSEQVQVALDFPQHQPWVERFLGWWRYGIEDWLSRAETPRSLSFTCELGPPPYAITGADGRELSDRWAEALKLKALIRQMWDRSLATTAHQASNPVLTATIKNTPNSAR
>CP027724.1|AZE88887.1|2374626_2375172_+|hypothetical-protein
MNNGALRFFTESPMPETTVELIQTGPEHAELIRNLYQYYAYESSDWEQEDVEADGRFYIHDEHLTRYWQDPQWSANLLLVDGYIAGFLLIEGSELPGIDALELADLFILKRYRRKGIGRAIATQVLCSGEDLWLVRFYDQDEVSQAFWRTVLDNLPRPVQALELDDEPQLVSYLVTRASLH

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Crispr_ID: CP027724_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027724_3

3800517-3800628

Orphan

Consensus_repeat	Method
TCCCACATTTGGACCGGGATCGACATCAAAATCCTGGTCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027724_3

>merge|CP027724|3|3800517-3800628|CRISPRCasFinder
TCCCACATTTGGACCGGGATCGACATCAAAATCCTGGTCGGCCCAGAGGCCGCCATGGGGGCAAGCCCCTTCCCACATTTGGACAGGGATCGACATCAAAATCCTGGTCGGC

>CP027724|3|3|3800517-3800628|CRISPRCasFinder
TCCCACATTTGGACCGGGATCGACATCAAAATCCTGGTCGGC	CCAGAGGCCGCCATGGGGGCAAGCCCCT
TCCCACATTTGGACAGGGATCGACATCAAAATCCTGGTCGGC

Protein	Signature genes	Signature genes Name	Protein_function
CP027724.1\|AZE90126.1\|3800681_3801296_-\|Transcriptional-regulator,-AcrR-family	unknown	unknown	gnl\|CDD\|224228
CP027724.1\|AZE90116.1\|3789623_3790349_-\|General-secretion-pathway-protein-K	unknown	unknown	gnl\|CDD\|225698
CP027724.1\|AZE90124.1\|3796014_3798765_+\|beta-glucosidase	unknown	unknown	gnl\|CDD\|224389
CP027724.1\|AZE90134.1\|3811007_3812687_+\|Efflux-transport-system,-outer-membrane-factor-(OMF)-lipoprotein	unknown	unknown	gnl\|CDD\|182103
CP027724.1\|AZE90130.1\|3807702_3809343_-\|Methyl-accepting-chemotaxis-sensor/transducer-protein	unknown	unknown	gnl\|CDD\|214599
CP027724.1\|AZE90123.1\|3795289_3795505_-\|hypothetical-protein	unknown	unknown	unknown
CP027724.1\|AZE90128.1\|3804379_3806143_-\|diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
CP027724.1\|AZE90121.1\|3792217_3793420_-\|General-secretion-pathway-protein-F	unknown	unknown	gnl\|CDD\|273980
CP027724.1\|AZE90127.1\|3801821_3804227_-\|TonB-dependent-ferric-achromobactin-receptor-protein	unknown	unknown	gnl\|CDD\|273805
CP027724.1\|AZE90122.1\|3793416_3795147_-\|General-secretion-pathway-protein-E	unknown	unknown	gnl\|CDD\|131585
CP027724.1\|AZE90118.1\|3790971_3791334_-\|General-secretion-pathway-protein-I	unknown	unknown	gnl\|CDD\|225076
CP027724.1\|AZE90132.1\|3810088_3810559_-\|5'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP027724.1\|AZE90125.1\|3799214_3800339_+\|putative-transposase-YagA	unknown	unknown	gnl\|CDD\|366234
CP027724.1\|AZE90131.1\|3809681_3810113_+\|Transcriptional-regulator,-MarR-family	unknown	unknown	gnl\|CDD\|197670
CP027724.1\|AZE90135.1\|3812683_3813496_+\|Outer-membrane-protein-V	unknown	unknown	gnl\|CDD\|377682
CP027724.1\|AZE90117.1\|3790345_3790975_-\|General-secretion-pathway-protein-J	unknown	unknown	gnl\|CDD\|181557
CP027724.1\|AZE90120.1\|3791771_3792197_-\|General-secretion-pathway-protein-G	unknown	unknown	gnl\|CDD\|377975
CP027724.1\|AZE90133.1\|3810817_3810973_+\|hypothetical-protein	unknown	unknown	unknown
CP027724.1\|AZE90129.1\|3806240_3807554_-\|Methyl-accepting-chemotaxis-sensor/transducer-protein	unknown	unknown	gnl\|CDD\|214599
CP027724.1\|AZE90119.1\|3791330_3791762_-\|General-secretion-pathway-protein-H	unknown	unknown	gnl\|CDD\|227305

Protein	Function_ID	Function_description	E-value
CP027724.1\|AZE90126.1\|3800681_3801296_-\|Transcriptional-regulator,-AcrR-family	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.27354e-10
CP027724.1\|AZE90116.1\|3789623_3790349_-\|General-secretion-pathway-protein-K	gnl\|CDD\|225698	COG3156, PulK, Type II secretory pathway, component PulK [Intracellular trafficking and secretion].	4.66543e-11
CP027724.1\|AZE90124.1\|3796014_3798765_+\|beta-glucosidase	gnl\|CDD\|224389	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism].	6.17296e-53
CP027724.1\|AZE90130.1\|3807702_3809343_-\|Methyl-accepting-chemotaxis-sensor/transducer-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.63692e-53
CP027724.1\|AZE90134.1\|3811007_3812687_+\|Efflux-transport-system,-outer-membrane-factor-(OMF)-lipoprotein	gnl\|CDD\|182103	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein.	2.85022e-67
CP027724.1\|AZE90128.1\|3804379_3806143_-\|diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.39477e-94
CP027724.1\|AZE90121.1\|3792217_3793420_-\|General-secretion-pathway-protein-F	gnl\|CDD\|273980	TIGR02120, Putative_general_secretion_pathway_protein_F, type II secretion system protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher. [Protein fate, Protein and peptide secretion and trafficking].	2.31757e-154
CP027724.1\|AZE90127.1\|3801821_3804227_-\|TonB-dependent-ferric-achromobactin-receptor-protein	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	2.37926e-85
CP027724.1\|AZE90122.1\|3793416_3795147_-\|General-secretion-pathway-protein-E	gnl\|CDD\|131585	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
CP027724.1\|AZE90118.1\|3790971_3791334_-\|General-secretion-pathway-protein-I	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	3.01715e-05
CP027724.1\|AZE90132.1\|3810088_3810559_-\|5'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	9.61115e-33
CP027724.1\|AZE90125.1\|3799214_3800339_+\|putative-transposase-YagA	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	2.0338e-27
CP027724.1\|AZE90131.1\|3809681_3810113_+\|Transcriptional-regulator,-MarR-family	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.86821e-16
CP027724.1\|AZE90135.1\|3812683_3813496_+\|Outer-membrane-protein-V	gnl\|CDD\|377682	pfam06629, MipA, MltA-interacting protein MipA. This family consists of several bacterial MltA-interacting protein (MipA) like sequences. As well as interacting with the membrane-bound lytic transglycosylase MltA, MipA is known to bind to PBP1B, a bifunctional murein transglycosylase/transpeptidase. MipA is considered to be a structural protein mediating the assembly of MltA to PBP1B into a complex.	6.06194e-41
CP027724.1\|AZE90117.1\|3790345_3790975_-\|General-secretion-pathway-protein-J	gnl\|CDD\|181557	PRK08808, PRK08808, type II secretion system protein J.	1.06113e-34
CP027724.1\|AZE90120.1\|3791771_3792197_-\|General-secretion-pathway-protein-G	gnl\|CDD\|377975	pfam08334, T2SSG, Type II secretion system (T2SS), protein G. The Type II secretion system, also called Secretion-dependent pathway (SDP), is responsible for the transport of proteins across the outer membrane first exported to the periplasm by the Sec or Tat translocon in Gram-negative (diderm) bacteria. The T2SG family includes proteins such as EpsG (P45773) in Vibrio cholera, XcpT also called PddA (Q00514) in Pseudomonas aeruginosa or PulG (P15746)in Klebsiella pneumoniae. The PulG is thought to be anchored in the inner membrane with its C-terminus directed towards the periplasme. Together with other members of the Type II secretion machinery, it is thought to assemble into a pilus-like structure that may function as a dynamic mechanism to push secreted proteins out of the cell. The polypeptide is organized into a long N-terminal alpha-helix followed by a loop region that separates it from a C-terminal anti-parallel beta-sheet.	1.55067e-40
CP027724.1\|AZE90129.1\|3806240_3807554_-\|Methyl-accepting-chemotaxis-sensor/transducer-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	2.88903e-44
CP027724.1\|AZE90119.1\|3791330_3791762_-\|General-secretion-pathway-protein-H	gnl\|CDD\|227305	COG4970, FimT, Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion].	2.18212e-10

>CP027724.1|AZE90125.1|3799214_3800339_+|putative-transposase-YagA
MPWNTRDTMSLKEEFIALAQQPGSNKRELCRRFGISPQTAYKWLKRYEAHGQSGLQEKSRKPATSPRLTTAALEAQIVALRQDHPAWGGRTISSLLKKQIAPSTVTNVLHRHGLIQPSQKEQEAKLRFEHEAPNDLWQMDFKGHFPTQEGRCHPLTMLDDHSRFNLAIQACDNERGATVKEKMIEVFQRFGLPARINVDNGPPWGSPRNPGEITELSIWLIRLGIRISFSRPYHPQTNGKIERFHRSFKAEVLDGRNFSTTKEAQKAFDQWREIYNLQRPHQALDYKVPMDRYRSSPWAYPQQLLEFEYGPDDVMAKAYHSRFRFQKRYFSIAKGLAGLHIAIRPNPETDGFFDVYFCHHFLRTIDVSKPDYGP
>CP027724.1|AZE90124.1|3796014_3798765_+|beta-glucosidase
MNKRKMIGAQSAFALLALAVSQVHAATSPALDEGRVSRAQKAADNTLAKMTMEEKLAYIGGTGGWDVKPLTQYGIPQIHGADGGVGVRYTSEGNAQGVVYPSGPNLAASWNPRRAIDLGRALGYDTASGGYQFVTGPGVNLYRMPYSGRAFEYLSGEDPFLGASLGPAVINGIQSRGVWANAKHFAANDQESNRFHLNETISERVLREMTLPPFESASKNSKVAMMMCAFQKVNGEFACQNKHLMRDILKTEWGYPGFVQSDYNAVVDGLPAAQAGTDLDMMGYQMNSTVLKPYLDSGQLSSATIDDKVRRILKQIYLYKFDSKAPLTSHNMNSATSNRTALNAAREGIVLLKNQNSLLPLDAKKVKRIAVVGTLAKYAPPTGFGSANVMAANYISELSGLQQLAPGAKVEFIDGLSLDPATSSWTHADSNGNSVKGLKAEFFSNTNWSGDPAATRTDAHVNLDWSTDSLPVNGDTAATSIRYSGQITPTVSGEQVFKIRADGAVRLYVNGKKVLDNGDGKPLPNNSIPPTIPVFAKVNLEAGKPVDITLEYSRRNGYLSTMGGLVGVQMSWASLVAPQDLAQYDAVLVAAGNSNEYEGEGFDHSFDLPEYQNLLIQSIAKVNPNTVVTLHGGTGLKMSDWIDQVPAALHAFYPGQNGGQALAEILLGKVNPSAKLPISIERNIEDNPIYATFPKFDNQETLAEMSYKDDLFLGYRGYEKKGIKPLYPFGYGLSYTTFGYSNISVSPGVAVAGAPIKVSFDLANTGKVAGAEVAELYVGQNNPKVERAIKELKGYKKVFLKPGQSKRVTIELNDRSLAYYDVASKQWVVDADSFNLSVGASSQDIRLNAKLVNPFRQELSTTTSNPLPRSALNSTLRESTVKTGGVLHQNEGDSGTSDGDGYDMSDDSSQGSAAGN
>CP027724.1|AZE90123.1|3795289_3795505_-|hypothetical-protein
MKISLLGAGLVLGVALSGAAMAAESTDADATSGAADSTVLTQTYDAKAAKKQKAETTKGGRPLNTTATPTK
>CP027724.1|AZE90122.1|3793416_3795147_-|General-secretion-pathway-protein-E
MPSPSTPIDACQMHVPDTEQVCAWLMQQAGLKTVDLERARRLSQESADPELLGLLTRLGLVSEVELARAWADLLGAPLLLADAAPPLIDPLPSLTERFMRHYQVVPVGWSQGGLRVLAANPSLVYPFQAMAYACGVPVWLAVGPRNEVETLIERYYGQGRSAMGTLIENLDEQSGALEDIEHLKDMASEAPVIRLVNLILQRAVEHRASDIHIEPFENQLKVRYRIDGVLHEAEAPPSSSSAAVISRVKIMARLDIAERRLPQDGRIMLRIQGKELDLRVSTVPTSFGESVVMRLLDRQTVQFDFQSLGFDGQRLETFLEVLERPHGILLVTGPTGSGKTTTLYTALSRLNTAERKIITVEDPVEYQLEGINQIQVKPAIGLDFAGALRSIVRQDPDVIMIGEIRDLETCRIAIQSSLTGHLVLSTLHTNSAAASITRLLDMGVESYLIASTVNGILAQRLVRRLDPATREAFEAPPELIAEHGLDRFTDARPIMLYRPRADAPGGGYHGRSAITELLVMNEELRSLLMRQADAATLEAAARRGGLRTLHEEGLRQAVAGVTSLEEVLRVTRGEGT
>CP027724.1|AZE90121.1|3792217_3793420_-|General-secretion-pathway-protein-F
MSLFKYRALDSQGAAQHGTLDAKDHDAAVALLHKRGLLVLQVDVAGAQGLRNALGRGQLSGAALVSFTQQLATLLGAGQPLERSLGILLKQPGQPQTRALIERIREQVKAGQPLSKALEEEGSPFSPLYLSMVRAGEAGGALENTLRQLSDYLERSQLLRGEVINALIYPAFLVVGVLGSLALLLAYVVPQFVPIFKDLGVPIPLITEVILGLGQFLGAYGLAVFAGLIVTIWTLAARLRDPQRRERYDRRVLGLRVIGPLLQRVEAARLTRTLGTLLSNGVALLQALVIARQVCTNRALQAQVAQAAESVKGGGTLASAFGAQPLLPDLALQMIEVGEQAGELDSMLLKVADVFDVEAKRGIDRLLAALVPSLTVVMAVLVAVIMLAIMLPLMSLTSNI
>CP027724.1|AZE90120.1|3791771_3792197_-|General-secretion-pathway-protein-G
MRHTRFKPARRQGGFTLLEMLAVIVLLGIVATIVVRQVGGNVDKGKYGAGKAQLASLSMKIESYGLDVGSPPKSLQQLVDKPGNSAGWAGPYAKPSDLKDPFGHAFGYRFPGEHGAFDLIFYGQDGQPGGEGYSADLGNWE
>CP027724.1|AZE90119.1|3791330_3791762_-|General-secretion-pathway-protein-H
MANAQRGFTLLEMLVVIVLISIAAGLVGFGLQQGLRAAKERQAVGQMVEALRSTRARAIVSGTPQSTVFDLRSLSFQAPGRPLKHWPAGLQVTLHTAEHAGSAVEFYPDGSSTGGNLLLANGSRRWRIDIGWLTGSVQSKALP
>CP027724.1|AZE90118.1|3790971_3791334_-|General-secretion-pathway-protein-I
MKRQAGFTLLEMLAALTLMAICSTVLLVAFGQSARSLLQVAHSDRLSHAAVSVMDQEAAGPLANGVRQGDLDGIAWQLRIAQQPTRIGQPHLFRLDLTVSEGPRHASFSTLKLRAAGTGS
>CP027724.1|AZE90117.1|3790345_3790975_-|General-secretion-pathway-protein-J
MKRRQQGFTLLEIMIVLSLLGVLLTLVGGALLGANRAVLKAQRYTVSLDEMRAAQQFLRTAISEALPLDVTEDDSQTDGFFAGSPQRMQFVATLPGVLGGGIQRFTLQLTGAEAQRDLQVAFARFESPAQVSVPASRSEPQVLLKGVEDLQFSYRGVSPKGQATGWISEWPWTRRLPSAVRIAARVNGPVPWVTQVVALRLNLSSGGPE
>CP027724.1|AZE90116.1|3789623_3790349_-|General-secretion-pathway-protein-K
MIRHQRGVALLLVLWVLALLSLLLGGLAGWVQLESRQATWHRQHTQAVLAAEAGVALAMQGLADPLQRKQWIADGREIPLVFDDAQLHVSLRSERGKLYLNSAEVGDFARLALACGATQAQAGQLAKDLEVRRNQGLAPFRVMEEVRQLPGMTQALYGALVPEISLWSGLDRPDPAFASALMRRALNLPHLSAVGADPGEVLVIDSRAQRPGGYHAQLQATVLLSPAQGSAQPYRVLRWQE
>CP027724.1|AZE90126.1|3800681_3801296_-|Transcriptional-regulator,-AcrR-family
MTENPPKTRRAPKGEKRREELLDAALQVFSLEGYSGASVAQVAAIVGISVAGLLHHFPSKISLLMGVLQRRDEVNQRIADEVRAEKSLTGLLGSLRAINRSNATAPGVVRAFTILNAESLLDTQPAWGWFQARYAGIQRRLQGQFADLVAAGEVRGDVDIAGLVEEILAMMDGLQIQWLRFPEQVDLVARFDAYIARVEAAIRT
>CP027724.1|AZE90127.1|3801821_3804227_-|TonB-dependent-ferric-achromobactin-receptor-protein
MPAVPTMRLRPLLKLSLLLSLSTSPLFIPFSYAEDAAARRSYQVPAGSLSAALTRFAGLAGVNLSIDPALVSGRSSSGLSGDYGVEEGFARLLQGSGLQLQPMGEQAYVLVAVPDGASLQLAPTSIVGTTGLADGDTYAGGQVARRGSQGLLGARDFMETPFSMTTYTADAVKNQQARTLGDLIASDPSVRATNPAGGRYEQFTIRGFSLFNSDVAYNGLYGVLPTYTIDMEMADRVDIVKGPTQLINGISPRGSVGGGINVVPKRATDKDINSFTGSWASDSQTGGAVDIGRRFGEENKFGIRFNGVKQAGDTEWDHQSVDREMAVLGLDFRGERLRLSTDIGRTERDTDAPQERVQVGPNAKVPSANDVRRNYAQSWSKASTNDTFGTVNGEFDLNDSVMLYGGVGARKSNHDFLRHAVSVTNNAGDFSVLPRDFTRDENVRTATAGVRSWFHTGPVSHEINLAASYFYMDFENGGARYAAAPSNLYNPVQTRVPSRPTRFDSKVYTENKFSGVALSDTLGFFDDRLLLTLGARWQRVKVDDWTDNVKGATAYDEEKISPSGGVLFKATDKLSLYANYMEGLSQGKVAPSTSINEDEIFPPFISRQIEAGAKYDAGAFAVTAAVFRIKQPAYETNATSRVFGPNGKRQNNGVELSVFGEPLKGFRLLGGVMYIDSELTHTTNGTFDGNRAPATPKYNVNLGAEWDVPTLEGLTLTSRGIYSSSQYLDQSNVKQIDAWNRIDVGARYAFKVDDKHITLRANVENVADKRYWSSAGASDDSEPGLTLSTPRTYLLSATVDF
>CP027724.1|AZE90128.1|3804379_3806143_-|diguanylate-cyclase/phosphodiesterase
MEHAEDLSPIERRRFLRIRELCLLDDQRDDTFDQIVALCAEYFRAPIVLISIVDEHKQWFRAKVGVSINETSRSESFCAHTLYSHEFLEVPDATLDLRFQDNPLVTGLPGIRYYAGAPLTTDDGLGLGALCVIDTVARPRMSEQDASMLRHLAGLVMSRIIALRSENYVDPATGLYNRARLESDIGKAQNRADVCSIVAIDVISPDFLNEVVKTLGYEFSLELMLTIKERLLSIVPPESPLYKISPTRFGLVLPYPIAEAVSKAVINDYVTPVLCHDIPLQMTVGVGLLKLGGAGESPHECLRLAISAADDARDRMVGWCYYEAKLDTVQQRTFIILSSLATAIASDEQFRMVYQPRIDIGTAKCTSVEALLRWEHPLLGAIGPSEFIPLAEKTALMGQISLWVLHNTIDQAAQWQRQGLNFKVSINVTVQDIESSVFINALVRRVRQADFDPRLLEVELTESARIDDFDSVLLHLNQLRALGIGIAIDDFGTGYSNWSHLQRLPASVVKLDRSLIENLVQQSRSQCLVRTIIKLAHSLGYRVVAEGVETLQTYELVSGWGCHEVQGYLIARPMESAAIPGWLSNRA
>CP027724.1|AZE90129.1|3806240_3807554_-|Methyl-accepting-chemotaxis-sensor/transducer-protein
MFNTKLKNQLHAQTAELLELRQLRDGLNREMLTLSIDPAFKIIACNENFAGALGYNQDRLVGRAMADVVPQYVSKLPCFHNFRAAVAAGKSISDEYRYLHADGSLVWLHAHWQPVKDENGRLSHVTCHATNITSRVEEASENTSFIDALLRSTAVIEFDLSGHVLMANEQFLKAMGYNLNQAKGSHHRIFCRPEEASSQKYKEFWSTLNRGEFVAGRFERVDSSGNTVWLEATYNPVYDTEGTLCKVVKFATVITDQVAREQEVSEAAQTAFEISRQTDVTAQRGAVVVNDTMHTMRKVAGDMQAASGGVEALGKQSLLISSIIQTISSIAQQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAGRTSTATEEIASVVLQNQKLVEQTVAEMANSKSQAEQGLGLATQAGQVIVEIQDGAKRVVEAVGRFATQVA
>CP027724.1|AZE90130.1|3807702_3809343_-|Methyl-accepting-chemotaxis-sensor/transducer-protein
MKKTLSLATRIGLSFAAILALLMMITAIGIQRVGFIDSTLGDVSENAAKVQRYAINFRGSVHNRAIAIRDAVLVTSDPDLDTYLSQINALEKAYADSAAPMDQLFERANVTGEELRLLTAIKEIEQQTLKSTQAVISLRRAGDIPGAQALLMRQTSLDYSEWLKRVNALIDYEEASIKAKLGAVQETASQFSTLMLIATGIALLLSVTLSAVIIRFVKSTLGAEPTEVALAIERLAAGDLNQTISTDYPKSVMGVLKDALVHLAETIQQVRRAAQEVNHSSIQLSATSSTNNDQINLQTHEAEQVAAAITQMAATVSEVSGYAAQAADASRLADIEVENGNRLVASTAVAIEQLAMTLEQTTGTVNQVSQYSENIESVIDVINSIAAQTNLLALNAAIEAARAGEHGRGFAVVADEVRSLANRTQQSTEEIRQMISTLQSGTEAASQTMRNSCELASQTVTQTRSAQSALARISEQVGAISHMNAQIASASVQQSGVADDVAQNINRIHGSTVQSATGSHQVATASRELSQLADRLAAKVAFFTAA
>CP027724.1|AZE90131.1|3809681_3810113_+|Transcriptional-regulator,-MarR-family
MHISLFRERFTRLNKRLRQEAHNHPDTWSQMLVLSAIDQMDGRATPSKIAEAENIRSSNLASLLKDLEARDLITRTPDTEDRRRTWIGLSEQGRCVLQASRQRRDEWLAEAVDACLTASERKRLEAAGLLMDKLSSYGSSDWR
>CP027724.1|AZE90132.1|3810088_3810559_-|5'-nucleotidase-SurE
MTGLLFGIPSIALSQAFTDRSAVPWENALNHGAPVIEQLMARQWPPDVCLNVNFPSCAPGAVLPLKITRQGRGRLEGVSVRSENDPRGLEYHWLQLRRHPCTDEPGTETAESLGGHITATPLQFERTYASASMTCENRIFPLGAFDSELQRQSELP
>CP027724.1|AZE90133.1|3810817_3810973_+|hypothetical-protein
MAGNAFKYLEPWGINTIVVGEKDSLKSMTLRHGHAPSMLPQEAFGVTPSKA
>CP027724.1|AZE90134.1|3811007_3812687_+|Efflux-transport-system,-outer-membrane-factor-(OMF)-lipoprotein
MKTGLPSLTKAYGKSHWFQNRPLALATKIGFLHTKKSLDETLIIHTRFIESPLPVLPYARLSRTDPMPTTVPLSKPVKRPERLVAVLLLVGTLAGCSLAPKYQALVLPVPQTLQGEPSTGTPSSVTGEVEGLSEEERQLLAGLDSSAQLPHRVEQALNYNRDLRLALLRVEQARAQYGISRADRLPTVALGLQRNRQHLHDKAADERYGQDIAVASVGVSDFELDFFGRVRSLSEAAQHDYLATRYGALAARKALIVEVARLYLQERLQAGVQSDTQSILDNQNLLLSVLDGQQKEGLVAQDTVDTQRMEVRRAAQQWQDASADHARAQQALAWVTGYQAAPSTATATDPAIDLDTPPWLIELSSQRLLQRFDVRQCEEALRAANANIGAARAAFFPSITLSTGAGIASPRLSNLFSSGSGAWLFTPQLNLPLFDGGRNQANLDLATSRQQSAVAQYEKTVQDAFREIADLLSQRQQALANATTQIDLAALTALKAKRLDQQIAAGAAARSEHLAAAIRLAESHIELRKATYQLLFNRLALYRALSGAPLFSSAERVSP
>CP027724.1|AZE90135.1|3812683_3813496_+|Outer-membrane-protein-V
MNLTTLPSRTVLWGAAALMACTLAIPAQAADASPAADKTTATLGLGMGVTPRYMGADRYRALVLPMFSIQRGALFADTTRGLGVQFQSDSGFGASAAINYDLGRKEKDSTSRPGDRELNGMGDINGATVADFTLSQQLFDWLSVSGEAELRMAGEHRGNRYRFGLEGILLHTDSDTLALDIDAHAGDGRYNQTFFGVTQAQSQRSLYGKYNADAGIYAYSAALNWQHSLNAHWSTLASLTLTQYADQARNSPLIRRESAGLGMFAINYTF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP027724_1	1.1\|2236233\|44\|CP027724\|CRISPRCasFinder	2236233-2236276	44	CP027724.1	3800512-3800555	2	0.955

1. spacer 1.1|2236233|44|CP027724|CRISPRCasFinder matches to position: 3800512-3800555, mismatch: 2, identity: 0.955

gaccaggatttttgtgtcgatcccggtccaaatgtgggaggggg	CRISPR spacer
gaccaggattttgatgtcgatcccggtccaaatgtgggaggggg	Protospacer
************ .******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP027724_3	3.1\|3800559\|28\|CP027724\|CRISPRCasFinder	3800559-3800586	28	NZ_CP031947	Ruegeria sp. AD91A plasmid unnamed1, complete sequence	398991-399018	6	0.786

1. spacer 3.1|3800559|28|CP027724|CRISPRCasFinder matches to NZ_CP031947 (Ruegeria sp. AD91A plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

ccagaggccgccatgggggcaagcccct	CRISPR spacer
tcagaggccgccatgggggcatcgcggt	Protospacer
.********************   *  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1305558 : 1344753

uncultured_Caudovirales_phage(31.82%)

tRNA,plate,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE87867.1\|1305558_1306029_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
AZE87868.1\|1306162_1307218_-	Ferric iron ABC transporter, ATP-binding protein	Q6GZ03	Mycoplasma_phage	5.1e-21	37.7
AZE87869.1\|1307214_1308138_-	Ornithine carbamoyltransferase	A0A1J0F9B8	Only_Syngen_Nebraska_virus	2.1e-18	27.4
AZE87870.1\|1308567_1310676_+	Formate dehydrogenase-O, major subunit	NA	NA	NA	NA
AZE87871.1\|1310775_1311114_+	Glutaredoxin-related protein	NA	NA	NA	NA
AZE87872.1\|1311182_1311653_-	Bacterioferritin	NA	NA	NA	NA
AZE87873.1\|1311853_1312072_-	Bacterioferritin-associated ferredoxin	NA	NA	NA	NA
AZE87874.1\|1312316_1312919_+	Alkyl hydroperoxide reductase subunit C-like protein	NA	NA	NA	NA
AZE87875.1\|1313177_1313849_-	Ribonuclease T	NA	NA	NA	NA
AZE87876.1\|1313845_1314892_-	Dihydroorotase	NA	NA	NA	NA
AZE87877.1\|1315048_1315957_+	Sodium-type flagellar protein motY precursor	NA	NA	NA	NA
AZE87878.1\|1316086_1317304_+	Argininosuccinate synthase	NA	NA	NA	NA
AZE87879.1\|1317930_1318563_+	Two-component transcriptional response regulator, LuxR family	NA	NA	NA	NA
AZE87880.1\|1318650_1318833_-	hypothetical protein	NA	NA	NA	NA
AZE87881.1\|1318941_1319580_-	Endonuclease III	NA	NA	NA	NA
AZE87882.1\|1319649_1320630_-	Electron transport complex protein RnfB	NA	NA	NA	NA
AZE87883.1\|1320717_1322769_-\|tRNA	Methionyl-tRNA synthetase	NA	NA	NA	NA
AZE87884.1\|1322940_1324035_+	[4Fe-4S] cluster assembly scaffold protein Mrp (ApbC)	NA	NA	NA	NA
AZE87885.1\|1324496_1324820_-	4Fe-4S dicluster domain	NA	NA	NA	NA
AZE87886.1\|1324962_1327554_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	3.3e-29	21.7
AZE87887.1\|1327908_1328280_-	hypothetical protein	NA	NA	NA	NA
AZE87888.1\|1328272_1328761_-	GepA protein	D0UIM3	Aggregatibacter_phage	4.9e-27	44.5
AZE87889.1\|1328993_1329728_+	Transcriptional regulator	B5TK58	Pseudomonas_phage	2.7e-117	86.1
AZE87890.1\|1330321_1330660_+	Holin	B5TK61	Pseudomonas_phage	1.6e-45	81.2
AZE87891.1\|1330679_1331195_+	hypothetical protein	NA	NA	NA	NA
AZE87892.1\|1331198_1331807_+\|plate	Baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	1.1e-44	51.7
AZE87893.1\|1331819_1332152_+\|plate	Baseplate assembly protein W	A0A2H4JI46	uncultured_Caudovirales_phage	2.3e-36	68.2
AZE87894.1\|1332148_1333144_+\|plate	Phage-related baseplate assembly protein	A0A2H4JC04	uncultured_Caudovirales_phage	6.6e-111	63.8
AZE87895.1\|1333140_1333779_+\|tail	Phage tail fiber	A0A2H4JDK0	uncultured_Caudovirales_phage	1.1e-39	53.4
AZE87896.1\|1333775_1334306_+\|tail	Phage tail fiber protein	B0ZSG1	Halomonas_phage	2.5e-48	56.3
AZE87897.1\|1334353_1335136_+	hypothetical protein	NA	NA	NA	NA
AZE87898.1\|1335138_1335441_+	Phage protein	Q8H9M8	Vibrio_phage	2.8e-12	47.4
AZE87899.1\|1335528_1335702_+	hypothetical protein	NA	NA	NA	NA
AZE87900.1\|1335704_1336871_+\|tail	Major tail sheath protein	B0ZSG8	Halomonas_phage	1.6e-124	57.0
AZE87901.1\|1336870_1337377_+	hypothetical protein	Q6R4W3	Vibrio_virus	1.3e-22	35.1
AZE87902.1\|1337429_1338011_+	hypothetical protein	B0ZSH0	Halomonas_phage	3.4e-27	38.8
AZE87903.1\|1338007_1338133_+	hypothetical protein	NA	NA	NA	NA
AZE87904.1\|1338139_1340362_+\|tail	Phage tail length tape-measure protein	NA	NA	NA	NA
AZE87905.1\|1340361_1340745_+\|tail	Unclassified tail protein	A0A2H4JAC8	uncultured_Caudovirales_phage	3.9e-35	57.5
AZE87906.1\|1340737_1340950_+\|tail	P2-like prophage tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	1.2e-17	64.3
AZE87907.1\|1340959_1341961_+\|tail	Phage tail protein D	A0A2H4JH05	uncultured_Caudovirales_phage	7.1e-97	53.3
AZE87908.1\|1341983_1342541_+	Lytic enzyme	B5TK83	Pseudomonas_phage	1.4e-73	71.0
AZE87909.1\|1342528_1343029_+	hypothetical protein	B5TK84	Pseudomonas_phage	1.7e-27	49.1
AZE87910.1\|1343110_1343611_+	Nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	5.7e-71	83.7
AZE87911.1\|1343694_1344753_+	RecA protein	A0A0S2MVG1	Bacillus_phage	2.4e-111	62.4

DBSCAN-SWA_2

1452155 : 1457118

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE88017.1\|1452155_1452905_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.3e-62	49.8
AZE88018.1\|1452904_1453582_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.1e-43	53.1
AZE88019.1\|1453790_1454627_+	Murein hydrolase activator NlpD	A0A0S2SXL7	Bacillus_phage	8.2e-06	33.3
AZE88020.1\|1454732_1455740_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.3e-34	36.2
AZE88021.1\|1455953_1456163_-	Cold shock protein of CSP family	Q9AZD3	Lactococcus_phage	2.2e-16	66.7
AZE88022.1\|1456389_1456530_-	hypothetical protein	NA	NA	NA	NA
AZE88023.1\|1456551_1457118_+	Deoxycytidine triphosphate deaminase	S5VM63	Pseudomonas_phage	6.2e-74	73.3

DBSCAN-SWA_3

1594656 : 1600647

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE88156.1\|1594656_1595370_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	A0A0E3HWF9	Synechococcus_phage	6.7e-41	37.1
AZE88157.1\|1595620_1595908_-	mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	6.4e-35	76.6
AZE88158.1\|1595897_1596137_-	RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)	A0A2H4JBG1	uncultured_Caudovirales_phage	1.4e-30	84.8
AZE88159.1\|1596656_1597883_-	putative MFS-type transporter	NA	NA	NA	NA
AZE88160.1\|1598043_1598415_-	Helix-turn-helix motif	A0A222YXG1	Escherichia_phage	2.7e-41	66.7
AZE88161.1\|1598418_1598721_-	putative membrane protein	A0A0P0ZE17	Stx2-converting_phage	2.4e-16	44.4
AZE88162.1\|1599021_1600647_+	Methyl-accepting chemotaxis sensor/transducer protein	A0A2H4J162	uncultured_Caudovirales_phage	1.2e-64	41.4

DBSCAN-SWA_4

2868926 : 2924592

Bacillus_phage(42.86%)

protease,integrase

attL 2867715:2867731|attR 2877465:2877481

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2867715:2867731	attL	NA	NA	NA	NA
AZE89309.1\|2868926_2869088_-\|integrase	integrase, putative	NA	NA	NA	NA
AZE89310.1\|2869187_2870102_-	Transcriptional regulator MexT	NA	NA	NA	NA
AZE89311.1\|2870371_2871394_+	Quinone oxidoreductase	NA	NA	NA	NA
AZE89312.1\|2872095_2873520_+	hypothetical protein	NA	NA	NA	NA
AZE89313.1\|2873554_2874958_+	Transcriptional regulatory protein	NA	NA	NA	NA
AZE89314.1\|2875066_2876710_+	Phosphoglucomutase	NA	NA	NA	NA
AZE89315.1\|2877281_2877977_-	Pirin	NA	NA	NA	NA
2877465:2877481	attR	NA	NA	NA	NA
AZE89316.1\|2878194_2880642_+	Putative helicase	A0A068EQC7	Bacillus_phage	5.4e-05	26.7
AZE89317.1\|2880781_2881054_-	hypothetical protein	NA	NA	NA	NA
AZE89318.1\|2881646_2883080_+	Secreted alkaline metalloproteinase	NA	NA	NA	NA
AZE89319.1\|2883128_2883485_+	Alkaline proteinase inhibitor precursor	NA	NA	NA	NA
AZE89320.1\|2883589_2885332_+	Type I secretion system ATPase, ATP-binding component PrtD/AprD	W8CYL7	Bacillus_phage	1.9e-25	30.0
AZE89321.1\|2885423_2886716_+\|protease	ABC-type protease exporter, membrane fusion protein family component PrtE/AprE	NA	NA	NA	NA
AZE89322.1\|2886718_2888059_+\|protease	ABC-type protease exporter, outer membrane component PrtF/AprF	NA	NA	NA	NA
AZE89323.1\|2888093_2891051_+\|protease	Putative serine protease	NA	NA	NA	NA
AZE89324.1\|2891207_2894327_+\|protease	Extracellular serine protease precursor	NA	NA	NA	NA
AZE89325.1\|2894504_2895929_+	Lipase	NA	NA	NA	NA
AZE89326.1\|2896062_2896287_-	hypothetical protein	NA	NA	NA	NA
AZE89327.1\|2896475_2898122_+	hypothetical protein	NA	NA	NA	NA
AZE89328.1\|2898118_2900377_+	DinG family ATP-dependent helicase	NA	NA	NA	NA
AZE89329.1\|2900587_2901538_-	hypothetical protein	NA	NA	NA	NA
AZE89330.1\|2901541_2902951_-	hypothetical protein	NA	NA	NA	NA
AZE89331.1\|2902960_2903218_+	hypothetical protein	NA	NA	NA	NA
AZE89332.1\|2903361_2903907_+	hypothetical protein	NA	NA	NA	NA
AZE89333.1\|2903992_2904205_+	hypothetical protein	NA	NA	NA	NA
AZE89334.1\|2904341_2904689_-	hypothetical protein	Q5ZQZ8	Pseudomonas_phage	1.7e-05	45.5
AZE89335.1\|2904744_2906091_-	sodium/hydrogen exchanger family protein	NA	NA	NA	NA
AZE89336.1\|2906311_2910928_+	hypothetical protein	NA	NA	NA	NA
AZE89337.1\|2910950_2912198_-	diguanylate cyclase/phosphodiesterase	W8CYM9	Bacillus_phage	2.5e-19	41.9
AZE89338.1\|2912207_2912591_-	CheY-like receiver	NA	NA	NA	NA
AZE89339.1\|2912575_2913916_-	hypothetical protein	A0A1V0SGX0	Hokovirus	1.7e-29	33.1
AZE89340.1\|2914037_2914169_-	hypothetical protein	NA	NA	NA	NA
AZE89341.1\|2914231_2915764_+	D-xylose transport ATP-binding protein XylG	A0A2H4PQG7	Staphylococcus_phage	4.2e-16	30.7
AZE89342.1\|2915756_2916737_+	Ribose ABC transport system, permease protein RbsC	NA	NA	NA	NA
AZE89343.1\|2916773_2917706_+	Xylose ABC transporter, periplasmic xylose-binding protein XylF	NA	NA	NA	NA
AZE89344.1\|2917731_2918724_+	Ribose operon repressor	NA	NA	NA	NA
AZE89345.1\|2918738_2920199_+	Xylulose kinase	NA	NA	NA	NA
AZE89346.1\|2920436_2920787_-	hypothetical protein	NA	NA	NA	NA
AZE89347.1\|2920790_2920904_-	hypothetical protein	NA	NA	NA	NA
AZE89348.1\|2921041_2921482_-	Transcriptional regulator, AsnC family	NA	NA	NA	NA
AZE89349.1\|2921591_2922500_+	Permease of the drug/metabolite transporter (DMT) superfamily	NA	NA	NA	NA
AZE89350.1\|2922573_2924592_-\|protease	putative protease YdcP	Q6DW11	Phage_TP	2.8e-23	29.5

DBSCAN-SWA_5

3536771 : 3542998

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE89885.1\|3536771_3537164_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	5.3e-56	83.7
AZE89886.1\|3537165_3537516_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	5.2e-39	71.9
AZE89887.1\|3537515_3537794_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.4e-25	59.6
AZE89888.1\|3537790_3538126_+\|tRNA	tRNA 2-thiouridine synthesis protein TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	1.5e-43	75.7
AZE89889.1\|3538122_3539124_+	Anthranilate phosphoribosyltransferase like	A0A2H4JBY5	uncultured_Caudovirales_phage	9.4e-166	85.7
AZE89890.1\|3539212_3540208_+	Glutathione S-transferase, omega	NA	NA	NA	NA
AZE89891.1\|3540322_3541717_-	Precorrin-2 oxidase	NA	NA	NA	NA
AZE89892.1\|3541717_3542998_-\|tRNA	Seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.1e-97	52.7

DBSCAN-SWA_6

3843985 : 3914784

Pseudomonas_phage(58.82%)

tRNA,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE90158.1\|3843985_3846364_-\|tRNA	Phenylalanyl-tRNA synthetase beta chain	NA	NA	NA	NA
AZE90159.1\|3846390_3847407_-\|tRNA	Phenylalanyl-tRNA synthetase alpha chain	A0A2K9L3A8	Tupanvirus	1.1e-28	39.3
AZE90160.1\|3847516_3847873_-	LSU ribosomal protein L20p	NA	NA	NA	NA
AZE90161.1\|3847902_3848097_-	LSU ribosomal protein L35p	NA	NA	NA	NA
AZE90162.1\|3848156_3848690_-	Translation initiation factor 3	NA	NA	NA	NA
AZE90163.1\|3848707_3850630_-\|tRNA	Threonyl-tRNA synthetase	A0A2K9L297	Tupanvirus	1.8e-125	37.7
AZE90164.1\|3850995_3851310_+	hypothetical protein	NA	NA	NA	NA
AZE90165.1\|3851600_3851813_+	Cold shock protein of CSP family	A0A1W6JNX5	Morganella_phage	5.8e-17	62.3
AZE90166.1\|3851885_3852206_-	putative lipoprotein	NA	NA	NA	NA
AZE90167.1\|3852351_3852660_-	hypothetical protein	NA	NA	NA	NA
AZE90168.1\|3852816_3853023_+	hypothetical protein	NA	NA	NA	NA
AZE90169.1\|3853056_3854085_-	Inosine-uridine preferring nucleoside hydrolase	NA	NA	NA	NA
AZE90170.1\|3854111_3854516_-	Ribose ABC transport system, high affinity permease RbsD	NA	NA	NA	NA
AZE90171.1\|3854512_3855430_-	Ribokinase	NA	NA	NA	NA
AZE90172.1\|3855453_3856476_-	Ribose operon repressor	C6ZCU4	Enterobacteria_phage	2.4e-39	31.6
AZE90173.1\|3856479_3857457_-	Ribose ABC transport system, permease protein RbsC	NA	NA	NA	NA
AZE90174.1\|3857453_3859007_-	Ribose ABC transport system, ATP-binding protein RbsA	A0A2H4PQG7	Staphylococcus_phage	5.4e-11	29.0
AZE90175.1\|3859064_3860024_-	Ribose ABC transport system, periplasmic ribose-binding protein RbsB	NA	NA	NA	NA
AZE90176.1\|3860476_3861565_+	L-asparaginase	NA	NA	NA	NA
AZE90177.1\|3861761_3862013_+	hypothetical protein	A0A2H4J8G7	uncultured_Caudovirales_phage	2.1e-13	49.4
AZE90178.1\|3862017_3862707_+	Endonuclease I precursor	NA	NA	NA	NA
AZE90179.1\|3862738_3863119_-	hypothetical protein	NA	NA	NA	NA
AZE90180.1\|3863364_3863559_+	Carbon storage regulator	J7I430	Pseudomonas_phage	1.4e-12	66.7
AZE90181.1\|3864009_3864705_-	Putative phosphatase YfbT	NA	NA	NA	NA
AZE90182.1\|3864909_3865170_+	hypothetical protein	NA	NA	NA	NA
AZE90183.1\|3865212_3865884_+	DNA-binding heavy metal response regulator	W8CYM9	Bacillus_phage	5.2e-35	34.4
AZE90184.1\|3865880_3867281_+	Heavy metal sensor histidine kinase	NA	NA	NA	NA
AZE90185.1\|3867288_3867747_-	CigR (Putative inner membrane protein)	NA	NA	NA	NA
AZE90186.1\|3867809_3868439_-	Pyrrolidone-carboxylate peptidase	NA	NA	NA	NA
AZE90187.1\|3868446_3869397_-	Membrane protein	NA	NA	NA	NA
AZE90188.1\|3869393_3870107_-	Membrane protein	NA	NA	NA	NA
AZE90189.1\|3870723_3871011_+	RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)	NA	NA	NA	NA
AZE90190.1\|3871454_3871787_+	Integrase	A0A2H4J1K3	uncultured_Caudovirales_phage	4.8e-50	92.2
AZE90191.1\|3872238_3874179_-	Methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	6.5e-30	31.1
AZE90192.1\|3874191_3874350_-	hypothetical protein	NA	NA	NA	NA
AZE90193.1\|3874979_3875747_-	Dam modification methylase	C7BGE1	Burkholderia_phage	1.8e-92	62.1
AZE90194.1\|3875777_3877052_-	Error-prone, lesion bypass DNA polymerase V (UmuC)	I6RSM4	Salmonella_phage	1.6e-106	50.0
AZE90195.1\|3877044_3877470_-	Error-prone repair protein UmuD	A0A1W6JNS2	Morganella_phage	3.4e-16	41.2
AZE90196.1\|3877571_3878258_+	Gifsy-2 prophage protein	A0A2H4J991	uncultured_Caudovirales_phage	3.2e-125	92.0
AZE90197.1\|3878244_3878763_-	hypothetical protein	A0A2H4IZW4	uncultured_Caudovirales_phage	1.4e-64	80.8
AZE90198.1\|3878759_3879185_-	structural protein P5, putative	A0A2H4J6R1	uncultured_Caudovirales_phage	5.3e-70	91.5
AZE90199.1\|3879243_3879612_-	hypothetical protein	NA	NA	NA	NA
AZE90200.1\|3879614_3880121_-	hypothetical protein	A0A1B0VMK1	Pseudomonas_phage	2.5e-05	31.9
AZE90201.1\|3880131_3880776_-	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	1.5e-47	45.9
AZE90202.1\|3881107_3884833_-\|tail	Phage tail fiber protein	A0A1B0VMH5	Pseudomonas_phage	0.0e+00	70.2
AZE90203.1\|3884911_3885250_+	hypothetical protein	NA	NA	NA	NA
AZE90204.1\|3885298_3885505_-\|tail	Phage tail assembly protein I	A0A1B0VMK7	Pseudomonas_phage	1.3e-29	94.1
AZE90205.1\|3885610_3885928_+	hypothetical protein	NA	NA	NA	NA
AZE90206.1\|3885972_3886323_-	Pyruvate:ferredoxin oxidoreductase	NA	NA	NA	NA
AZE90207.1\|3886310_3887261_-	hypothetical protein	NA	NA	NA	NA
AZE90208.1\|3887858_3887972_+	hypothetical protein	NA	NA	NA	NA
AZE90209.1\|3888277_3888442_-	hypothetical protein	NA	NA	NA	NA
AZE90210.1\|3888476_3889232_-\|tail	Phage tail assembly protein	A0A1B0VP68	Pseudomonas_phage	9.3e-142	90.8
AZE90211.1\|3889234_3889987_-\|tail	Phage minor tail protein	A0A1B0VNE0	Pseudomonas_phage	7.4e-139	92.8
AZE90212.1\|3889998_3890337_-\|tail	Phage minor tail protein	A0A1B0VMG7	Pseudomonas_phage	1.0e-55	85.7
AZE90213.1\|3890336_3893381_-\|tail	Phage tail length tape-measure protein 1	A0A1B0VMG8	Pseudomonas_phage	3.8e-194	42.0
AZE90214.1\|3893408_3893711_-	hypothetical protein	A0A1B0VMG9	Pseudomonas_phage	3.1e-24	56.2
AZE90215.1\|3893728_3894109_-	hypothetical protein	A0A1S5R1H9	Pseudomonas_phage	2.5e-18	40.6
AZE90216.1\|3894112_3894769_-	putative phage protein	A0A1S5R1H0	Pseudomonas_phage	3.3e-50	48.4
AZE90217.1\|3894841_3895258_-	hypothetical protein	A0A1B0VMI0	Pseudomonas_phage	2.5e-64	90.6
AZE90218.1\|3895254_3895851_-	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	1.9e-52	52.3
AZE90219.1\|3895847_3896216_-	phage-related conserved hypothetical protein	A0A1B0VRJ4	Pseudomonas_phage	2.4e-58	93.3
AZE90220.1\|3896267_3896477_-	hypothetical protein	NA	NA	NA	NA
AZE90221.1\|3896515_3897019_-	phage-related conserved hypothetical protein	A0A1B0VND3	Pseudomonas_phage	2.9e-83	93.4
AZE90222.1\|3897078_3897663_-	hypothetical protein	A0A1B0VMF7	Pseudomonas_phage	7.1e-65	70.4
AZE90223.1\|3897710_3898676_-	putative phage protein	A0A1B0VMF8	Pseudomonas_phage	7.2e-163	90.6
AZE90224.1\|3898688_3899417_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	1.5e-120	93.4
AZE90225.1\|3899517_3900129_-	hypothetical protein	NA	NA	NA	NA
AZE90226.1\|3900152_3901241_-	Phage protein	A0A1B0VMF3	Pseudomonas_phage	7.3e-188	94.5
AZE90227.1\|3901241_3902633_-	structural protein	A0A1B0VMH0	Pseudomonas_phage	2.7e-259	93.7
AZE90228.1\|3902629_3903931_-\|terminase	Phage terminase	A0A1B1P9C9	Acinetobacter_phage	3.0e-148	59.9
AZE90229.1\|3903917_3904379_-	Phage protein	A0A0S2SY97	Pseudomonas_phage	5.5e-44	69.9
AZE90230.1\|3904410_3905013_-	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	1.2e-107	93.1
AZE90231.1\|3905100_3905433_+	hypothetical protein	NA	NA	NA	NA
AZE90232.1\|3905867_3906212_-	hypothetical protein	A0A193GYR7	Enterobacter_phage	3.4e-06	35.1
AZE90233.1\|3906208_3906547_-	hypothetical protein	A0A088FVG2	Escherichia_phage	2.0e-19	47.3
AZE90234.1\|3906738_3907362_-	Colicin-M	NA	NA	NA	NA
AZE90235.1\|3907748_3908330_-	hypothetical protein	A0A059VF83	Pseudomonas_phage	2.9e-82	75.6
AZE90236.1\|3908326_3908971_-	Phage NinG rap recombination	A0A1B0VME4	Pseudomonas_phage	8.6e-104	88.8
AZE90237.1\|3908967_3909483_-	hypothetical protein	A0A2K8I9A9	Pseudomonas_phage	4.0e-35	45.0
AZE90238.1\|3909479_3909956_-	hypothetical protein	C8XUB7	Shigella_phage	3.6e-14	32.4
AZE90239.1\|3909952_3910372_-	hypothetical protein	A0A2H4J7V6	uncultured_Caudovirales_phage	3.7e-07	71.8
AZE90240.1\|3910368_3910644_-	hypothetical protein	NA	NA	NA	NA
AZE90241.1\|3910640_3911399_-	Replication protein P	A0A2D1GNB3	Pseudomonas_phage	6.6e-95	71.3
AZE90242.1\|3911437_3912232_-	Primosomal protein I	A0A059VF77	Pseudomonas_phage	7.9e-83	64.4
AZE90243.1\|3912231_3913041_-	Phage antirepressor	A0A2H4J111	uncultured_Caudovirales_phage	3.0e-98	70.6
AZE90244.1\|3913111_3913534_-	hypothetical protein	A0A2D1GNM7	Pseudomonas_phage	4.1e-30	47.9
AZE90245.1\|3913950_3914784_+	Putative cI prophage repressor protein	A0A2D1GNH0	Pseudomonas_phage	2.8e-91	83.3

DBSCAN-SWA_7

3919483 : 3935334

uncultured_Caudovirales_phage(58.82%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE90250.1\|3919483_3919918_+	hypothetical protein	Q1MVI3	Enterobacteria_phage	7.5e-27	45.1
AZE90251.1\|3919920_3920100_+	hypothetical protein	NA	NA	NA	NA
AZE90252.1\|3920083_3920302_+	hypothetical protein	NA	NA	NA	NA
AZE90253.1\|3920406_3920598_+	hypothetical protein	NA	NA	NA	NA
AZE90254.1\|3920659_3920977_+	hypothetical protein	NA	NA	NA	NA
AZE90255.1\|3921541_3921943_+	hypothetical protein	NA	NA	NA	NA
AZE90256.1\|3921974_3922307_+	hypothetical protein	NA	NA	NA	NA
AZE90257.1\|3922329_3922755_+	hypothetical protein	A0A2H4J9E7	uncultured_Caudovirales_phage	1.0e-57	82.7
AZE90258.1\|3922751_3922967_+	hypothetical protein	A0A2H4IZT6	uncultured_Caudovirales_phage	1.7e-27	84.5
AZE90259.1\|3922963_3923167_+	hypothetical protein	A0A2H4J1S2	uncultured_Caudovirales_phage	6.8e-15	56.2
AZE90260.1\|3923163_3923376_+	hypothetical protein	NA	NA	NA	NA
AZE90261.1\|3923372_3923492_+	hypothetical protein	NA	NA	NA	NA
AZE90262.1\|3923501_3923795_+	hypothetical protein	NA	NA	NA	NA
AZE90263.1\|3923837_3924575_+	hypothetical protein	A0A2H4J2D5	uncultured_Caudovirales_phage	6.6e-84	65.7
AZE90264.1\|3924571_3925135_+	hypothetical protein	A0A2H4IZG3	uncultured_Caudovirales_phage	1.2e-61	66.8
AZE90265.1\|3925145_3925739_+	hypothetical protein	A0A1B0VMB1	Pseudomonas_phage	1.9e-44	50.8
AZE90266.1\|3925808_3926138_+	hypothetical protein	A0A2H4JAQ1	uncultured_Caudovirales_phage	3.7e-18	59.3
AZE90267.1\|3926177_3926921_-	hypothetical protein	NA	NA	NA	NA
AZE90268.1\|3927680_3927911_-	hypothetical protein	NA	NA	NA	NA
AZE90269.1\|3928021_3929827_+	DNA cytosine methyltransferase family protein	A0A1I9KFW0	Aeromonas_phage	1.2e-99	35.4
AZE90270.1\|3929871_3930399_+	hypothetical protein	A0A0N9R385	Chrysochromulina_ericina_virus	4.7e-07	31.9
AZE90271.1\|3930414_3931209_+	Eaa protein	H6WRY2	Salmonella_phage	1.6e-14	64.4
AZE90272.1\|3931296_3931728_+	hypothetical protein	A0A2H4JDN9	uncultured_Caudovirales_phage	2.6e-08	39.4
AZE90273.1\|3931727_3932102_+	hypothetical protein	NA	NA	NA	NA
AZE90274.1\|3932151_3932397_+	hypothetical protein	NA	NA	NA	NA
AZE90275.1\|3932393_3933119_+	hypothetical protein	A0A2H5BFW5	Vibrio_phage	3.0e-52	45.5
AZE90276.1\|3933170_3933707_+	hypothetical protein	A0A1B0VM52	Pseudomonas_phage	3.2e-27	75.6
AZE90277.1\|3933743_3933962_+	hypothetical protein	A0A2H4J1L2	uncultured_Caudovirales_phage	2.3e-21	80.6
AZE90278.1\|3933964_3934198_+	hypothetical protein	A0A2H4JA17	uncultured_Caudovirales_phage	1.4e-35	100.0
AZE90279.1\|3934197_3935334_+	Integrase	A0A2H4J1K3	uncultured_Caudovirales_phage	3.1e-213	97.1

DBSCAN-SWA_8

5557078 : 5567907

Mannheimia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE91776.1\|5557078_5557318_-	hypothetical protein	B5TK57	Pseudomonas_phage	2.0e-10	56.1
AZE91777.1\|5557828_5558107_+	HigB toxin protein	A0A0M3LQB1	Mannheimia_phage	7.1e-15	39.1
AZE91778.1\|5558121_5558409_+	Antitoxin HigA	A0A0M3LPV0	Mannheimia_phage	8.4e-19	51.7
AZE91779.1\|5558519_5558975_-	chemotaxis protein, putative	NA	NA	NA	NA
AZE91780.1\|5558967_5564781_-	Chemotaxis protein cheA	W8CYM9	Bacillus_phage	3.7e-12	35.9
AZE91781.1\|5564956_5567008_-	Methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.2e-18	40.5
AZE91782.1\|5567004_5567529_-	type IV pili signal transduction protein PilI	Q56AR1	Bacillus_thuringiensis_phage	1.5e-05	34.6
AZE91783.1\|5567541_5567907_-	twitching motility protein PilH	W8CYM9	Bacillus_phage	1.1e-12	33.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027724

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection