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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP027726 Pseudomonas orientalis strain R4-35-08 chromosome, complete genome 8 crisprs DEDDh,DinG,csa3,cas3,WYL 2 1 7 0

Results visualization

1. CP027726
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027726_1 2396610-2396703 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027726_2 2490001-2490095 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027726_3 2730966-2731058 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027726_4 3275433-3275523 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027726_5 3348606-3348801 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027726_6 3962426-3962520 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027726_7 4047989-4048094 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027726_8 4680965-4681069 Orphan NA
1 spacers
DEDDh

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP027726_9 9.1|5211332|35|CP027726|CRISPRCasFinder 5211332-5211366 35 CP027726.1 735225-735259 0 1.0
CP027726_9 9.1|5211332|35|CP027726|CRISPRCasFinder 5211332-5211366 35 CP027726.1 1290027-1290061 0 1.0
CP027726_9 9.1|5211332|35|CP027726|CRISPRCasFinder 5211332-5211366 35 CP027726.1 3388843-3388877 0 1.0
CP027726_9 9.1|5211332|35|CP027726|CRISPRCasFinder 5211332-5211366 35 CP027726.1 3674793-3674827 0 1.0
CP027726_9 9.1|5211332|35|CP027726|CRISPRCasFinder 5211332-5211366 35 CP027726.1 1289887-1289921 1 0.971
CP027726_9 9.1|5211332|35|CP027726|CRISPRCasFinder 5211332-5211366 35 CP027726.1 1289957-1289991 1 0.971
CP027726_9 9.1|5211332|35|CP027726|CRISPRCasFinder 5211332-5211366 35 CP027726.1 1918365-1918399 1 0.971
CP027726_9 9.1|5211332|35|CP027726|CRISPRCasFinder 5211332-5211366 35 CP027726.1 2651769-2651803 1 0.971
CP027726_9 9.1|5211332|35|CP027726|CRISPRCasFinder 5211332-5211366 35 CP027726.1 3699097-3699131 1 0.971
CP027726_9 9.1|5211332|35|CP027726|CRISPRCasFinder 5211332-5211366 35 CP027726.1 3704477-3704511 1 0.971
CP027726_9 9.1|5211332|35|CP027726|CRISPRCasFinder 5211332-5211366 35 CP027726.1 3838249-3838283 1 0.971
CP027726_9 9.1|5211332|35|CP027726|CRISPRCasFinder 5211332-5211366 35 CP027726.1 4053215-4053249 1 0.971
CP027726_9 9.1|5211332|35|CP027726|CRISPRCasFinder 5211332-5211366 35 CP027726.1 4080354-4080388 1 0.971
CP027726_3 3.1|2730989|47|CP027726|CRISPRCasFinder 2730989-2731035 47 CP027726.1 2732430-2732476 2 0.957
CP027726_9 9.1|5211332|35|CP027726|CRISPRCasFinder 5211332-5211366 35 CP027726.1 2323848-2323882 2 0.943
CP027726_9 9.1|5211332|35|CP027726|CRISPRCasFinder 5211332-5211366 35 CP027726.1 2682780-2682814 2 0.943
CP027726_9 9.1|5211332|35|CP027726|CRISPRCasFinder 5211332-5211366 35 CP027726.1 2732457-2732491 2 0.943
CP027726_9 9.1|5211332|35|CP027726|CRISPRCasFinder 5211332-5211366 35 CP027726.1 4015546-4015580 2 0.943

1. spacer 9.1|5211332|35|CP027726|CRISPRCasFinder matches to position: 735225-735259, mismatch: 0, identity: 1.0

gccccctcccacatttggaccgggatcgacacaaa	CRISPR spacer
gccccctcccacatttggaccgggatcgacacaaa	Protospacer
***********************************

2. spacer 9.1|5211332|35|CP027726|CRISPRCasFinder matches to position: 1290027-1290061, mismatch: 0, identity: 1.0

gccccctcccacatttggaccgggatcgacacaaa	CRISPR spacer
gccccctcccacatttggaccgggatcgacacaaa	Protospacer
***********************************

3. spacer 9.1|5211332|35|CP027726|CRISPRCasFinder matches to position: 3388843-3388877, mismatch: 0, identity: 1.0

gccccctcccacatttggaccgggatcgacacaaa	CRISPR spacer
gccccctcccacatttggaccgggatcgacacaaa	Protospacer
***********************************

4. spacer 9.1|5211332|35|CP027726|CRISPRCasFinder matches to position: 3674793-3674827, mismatch: 0, identity: 1.0

gccccctcccacatttggaccgggatcgacacaaa	CRISPR spacer
gccccctcccacatttggaccgggatcgacacaaa	Protospacer
***********************************

5. spacer 9.1|5211332|35|CP027726|CRISPRCasFinder matches to position: 1289887-1289921, mismatch: 1, identity: 0.971

gccccctcccacatttggaccgggatcgacacaaa	CRISPR spacer
gccccctcccacatttggaccgggttcgacacaaa	Protospacer
************************ **********

6. spacer 9.1|5211332|35|CP027726|CRISPRCasFinder matches to position: 1289957-1289991, mismatch: 1, identity: 0.971

gccccctcccacatttggaccgggatcgacacaaa	CRISPR spacer
gccccctcccacatttggaccgggttcgacacaaa	Protospacer
************************ **********

7. spacer 9.1|5211332|35|CP027726|CRISPRCasFinder matches to position: 1918365-1918399, mismatch: 1, identity: 0.971

gccccctcccacatttggaccgggatcgacacaaa	CRISPR spacer
gccccctcccacatttggaccaggatcgacacaaa	Protospacer
*********************.*************

8. spacer 9.1|5211332|35|CP027726|CRISPRCasFinder matches to position: 2651769-2651803, mismatch: 1, identity: 0.971

gccccctcccacatttggaccgggatcgacacaaa	CRISPR spacer
gccccctcccacatttggaccggggtcgacacaaa	Protospacer
************************.**********

9. spacer 9.1|5211332|35|CP027726|CRISPRCasFinder matches to position: 3699097-3699131, mismatch: 1, identity: 0.971

gccccctcccacatttggaccgggatcgacacaaa	CRISPR spacer
gccccctcccacatttggaccgggatcgacaaaaa	Protospacer
******************************* ***

10. spacer 9.1|5211332|35|CP027726|CRISPRCasFinder matches to position: 3704477-3704511, mismatch: 1, identity: 0.971

gccccctcccacatttggaccgggatcgacacaaa	CRISPR spacer
gccccctcccacatttggaccgggatcgacaaaaa	Protospacer
******************************* ***

11. spacer 9.1|5211332|35|CP027726|CRISPRCasFinder matches to position: 3838249-3838283, mismatch: 1, identity: 0.971

gccccctcccacatttggaccgggatcgacacaaa	CRISPR spacer
gccccctcccacatttggaccgggatcgacacgaa	Protospacer
********************************.**

12. spacer 9.1|5211332|35|CP027726|CRISPRCasFinder matches to position: 4053215-4053249, mismatch: 1, identity: 0.971

gccccctcccacatttggaccgggatcgacacaaa	CRISPR spacer
gccccctcccacatttggaccgggatcgacaaaaa	Protospacer
******************************* ***

13. spacer 9.1|5211332|35|CP027726|CRISPRCasFinder matches to position: 4080354-4080388, mismatch: 1, identity: 0.971

gccccctcccacatttggaccgggatcgacacaaa	CRISPR spacer
gccccctcccacatttgcaccgggatcgacacaaa	Protospacer
***************** *****************

14. spacer 3.1|2730989|47|CP027726|CRISPRCasFinder matches to position: 2732430-2732476, mismatch: 2, identity: 0.957

gatggcggcctcagagccgaccaggatgttgtgtcgatcctgaccca	CRISPR spacer
gatggcggcctcagagccgaccaggattttgtgtcgatcctggccca	Protospacer
*************************** **************.****

15. spacer 9.1|5211332|35|CP027726|CRISPRCasFinder matches to position: 2323848-2323882, mismatch: 2, identity: 0.943

gccccctcccacatttggaccgggatcgacacaaa	CRISPR spacer
gccccctcccacatttgggccaggatcgacacaaa	Protospacer
******************.**.*************

16. spacer 9.1|5211332|35|CP027726|CRISPRCasFinder matches to position: 2682780-2682814, mismatch: 2, identity: 0.943

gccccctcccacatttggaccgggatcgacacaaa	CRISPR spacer
gccccctcccacatttgagccgggatcgacacaaa	Protospacer
*****************..****************

17. spacer 9.1|5211332|35|CP027726|CRISPRCasFinder matches to position: 2732457-2732491, mismatch: 2, identity: 0.943

gccccctcccacatttggaccgggatcgacacaaa	CRISPR spacer
gccccctcccacatttgggccaggatcgacacaaa	Protospacer
******************.**.*************

18. spacer 9.1|5211332|35|CP027726|CRISPRCasFinder matches to position: 4015546-4015580, mismatch: 2, identity: 0.943

gccccctcccacatttggaccgggatcgacacaaa	CRISPR spacer
gccccctcccacatttgcaccgggattgacacaaa	Protospacer
***************** ********.********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP027726_7 7.1|4048025|34|CP027726|CRISPRCasFinder 4048025-4048058 34 NZ_CP040819 Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence 346361-346394 8 0.765
CP027726_7 7.1|4048025|34|CP027726|CRISPRCasFinder 4048025-4048058 34 NZ_CP041205 Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence 451362-451395 11 0.676

1. spacer 7.1|4048025|34|CP027726|CRISPRCasFinder matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 8, identity: 0.765

gaccgggatcgacaccaacatcctggt-cggcccg	CRISPR spacer
gcgcgggctcgacaacaacatcctggtgcagatc-	Protospacer
*  **** ****** ************ *.* .* 

2. spacer 7.1|4048025|34|CP027726|CRISPRCasFinder matches to NZ_CP041205 (Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence) position: , mismatch: 11, identity: 0.676

gaccgggatcgacaccaacatcctggtcggcccg	CRISPR spacer
agctcaaatccacaccaacctcctggtcggcatt	Protospacer
..*. ..*** ******** *********** . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1334634 : 1373726 47 uncultured_Caudovirales_phage(31.82%) tail,plate,tRNA NA
DBSCAN-SWA_2 1477596 : 1482566 6 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_3 1697458 : 1766215 73 Pseudomonas_virus(54.76%) tail,capsid,protease,integrase,head,holin,tRNA,plate,terminase attL 1688022:1688052|attR 1772240:1772270
DBSCAN-SWA_4 2822336 : 2828675 8 Pseudomonas_phage(50.0%) tail,capsid,portal NA
DBSCAN-SWA_5 3139282 : 3196966 75 Pseudomonas_phage(58.93%) tail,terminase,integrase attL 3139007:3139051|attR 3195363:3195407
DBSCAN-SWA_6 3566318 : 3572545 8 uncultured_Caudovirales_phage(83.33%) tRNA NA
DBSCAN-SWA_7 5337637 : 5346909 6 uncultured_Caudovirales_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage