CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027721	Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR36 chromosome, complete genome	2 crisprs	DinG,csa3,cas3,PD-DExK,DEDDh,WYL	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027721_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027721_1

3003519-3003644

Orphan

Consensus_repeat	Method
GTATCAGATCGAACGCGATCACCGGTTTTACGACGGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027721_1

>merge|CP027721|1|3003519-3003644|CRISPRCasFinder
GTATCAGATCGAACGCGATCACCGGTTTTACGACGGCTACGCCGCCGATCGCAGGCTGCGCAGCGGCCGCAAACCCAGGCAACGCGGGGTATCAGATCGAACGCGATCACCTGTTTTACGACGGCT

>CP027721|1|1|3003519-3003644|CRISPRCasFinder
GTATCAGATCGAACGCGATCACCGGTTTTACGACGGCT	ACGCCGCCGATCGCAGGCTGCGCAGCGGCCGCAAACCCAGGCAACGCGGG
GTATCAGATCGAACGCGATCACCTGTTTTACGACGGCT

Protein	Signature genes	Signature genes Name	Protein_function
CP027721.1\|AZD98637.1\|2991101_2993666_+\|c-di-GMP-phosphodiesterase	unknown	unknown	gnl\|CDD\|183097
CP027721.1\|AZD98656.1\|3011285_3011942_+\|Ribonuclease-precursor	unknown	unknown	gnl\|CDD\|238513
CP027721.1\|AZD98652.1\|3008078_3008330_+\|hypothetical-protein	unknown	unknown	unknown
CP027721.1\|AZD98644.1\|3000766_3001153_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372618
CP027721.1\|AZD98639.1\|2995635_2996925_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
CP027721.1\|AZD98651.1\|3007770_3008034_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371321
CP027721.1\|AZD98641.1\|2998389_2998830_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373120
CP027721.1\|AZD98648.1\|3004669_3005305_-\|Inner-membrane-protein	unknown	unknown	unknown
CP027721.1\|AZD98650.1\|3006737_3007478_-\|Transcriptional-regulatory-protein-ompR	unknown	unknown	gnl\|CDD\|181883
CP027721.1\|AZD98645.1\|3001218_3002115_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235447
CP027721.1\|AZD98653.1\|3008401_3009622_+\|DipZ-protein	unknown	unknown	gnl\|CDD\|239310
CP027721.1\|AZD98638.1\|2994046_2995636_+\|Lysine-specific-permease	unknown	unknown	gnl\|CDD\|182767
CP027721.1\|AZD98649.1\|3005421_3006741_-\|Sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP027721.1\|AZD98646.1\|3002107_3002869_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225760
CP027721.1\|AZD98655.1\|3010146_3010845_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224215
CP027721.1\|AZD98643.1\|2999639_3000572_+\|GDP-mannose-pyrophosphatase-NudK	unknown	unknown	gnl\|CDD\|184971
CP027721.1\|AZD98654.1\|3009835_3010150_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226827
CP027721.1\|AZD98640.1\|2997134_2998331_+\|Short-chain-alcohol-dehydrogenase-family	unknown	unknown	gnl\|CDD\|237460
CP027721.1\|AZD98642.1\|2998981_2999602_+\|Transcriptional-regulator,-AcrR-family	unknown	unknown	gnl\|CDD\|224228
CP027721.1\|AZD98647.1\|3004063_3004570_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168

Protein	Function_ID	Function_description	E-value
CP027721.1\|AZD98637.1\|2991101_2993666_+\|c-di-GMP-phosphodiesterase	gnl\|CDD\|183097	PRK11359, PRK11359, cyclic-di-GMP phosphodiesterase; Provisional.	0
CP027721.1\|AZD98656.1\|3011285_3011942_+\|Ribonuclease-precursor	gnl\|CDD\|238513	cd01062, RNase_T2_prok, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the prokaryotic RNase T2 family members.	3.64899e-72
CP027721.1\|AZD98653.1\|3008401_3009622_+\|DipZ-protein	gnl\|CDD\|239310	cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.	1.60379e-78
CP027721.1\|AZD98644.1\|3000766_3001153_+\|hypothetical-protein	gnl\|CDD\|372618	pfam13499, EF-hand_7, EF-hand domain pair.	6.57715e-06
CP027721.1\|AZD98639.1\|2995635_2996925_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	7.04317e-58
CP027721.1\|AZD98651.1\|3007770_3008034_+\|hypothetical-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	5.51398e-22
CP027721.1\|AZD98641.1\|2998389_2998830_-\|hypothetical-protein	gnl\|CDD\|373120	pfam14539, DUF4442, Domain of unknown function (DUF4442). This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 139 and 165 amino acids in length. There is a conserved PYF sequence motif. There is a single completely conserved residue N that may be functionally important.	1.68461e-58
CP027721.1\|AZD98650.1\|3006737_3007478_-\|Transcriptional-regulatory-protein-ompR	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	5.82777e-75
CP027721.1\|AZD98645.1\|3001218_3002115_+\|hypothetical-protein	gnl\|CDD\|235447	PRK05409, PRK05409, hypothetical protein; Provisional.	2.00377e-147
CP027721.1\|AZD98638.1\|2994046_2995636_+\|Lysine-specific-permease	gnl\|CDD\|182767	PRK10836, PRK10836, lysine transporter; Provisional.	0
CP027721.1\|AZD98649.1\|3005421_3006741_-\|Sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.13403e-45
CP027721.1\|AZD98646.1\|3002107_3002869_+\|hypothetical-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	1.01408e-49
CP027721.1\|AZD98655.1\|3010146_3010845_-\|hypothetical-protein	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	2.63674e-56
CP027721.1\|AZD98643.1\|2999639_3000572_+\|GDP-mannose-pyrophosphatase-NudK	gnl\|CDD\|184971	PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional.	3.77257e-81
CP027721.1\|AZD98654.1\|3009835_3010150_-\|hypothetical-protein	gnl\|CDD\|226827	COG4392, COG4392, Predicted membrane protein [Function unknown].	4.32441e-27
CP027721.1\|AZD98640.1\|2997134_2998331_+\|Short-chain-alcohol-dehydrogenase-family	gnl\|CDD\|237460	PRK13656, PRK13656, enoyl-[acyl-carrier-protein] reductase FabV.	0
CP027721.1\|AZD98642.1\|2998981_2999602_+\|Transcriptional-regulator,-AcrR-family	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.66925e-14
CP027721.1\|AZD98647.1\|3004063_3004570_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	3.98209e-21

>CP027721.1|AZD98646.1|3002107_3002869_+|hypothetical-protein
MAKPLIALDAQQQALTAYLRDPEHRAPPAGMDRARVEIYRELVFDNLLSLLGNTFPVLRSILGEADWRRLLRVFLREHRCATPKFGEIAGEFVAWMASTPAALQDASWPAFMLELSHYEWIEMALQQAEAEPLPASDPERLLSQPLRLSPLAWPLAYAWPVQRLGPAWRPSEPGAAPTLLLIRRDADYRVHFSELSPLAWRLLERIEAFPQLQGRDQLQGLALEAGIDDLETFLANGQSLLRQLHNQGVICPM
>CP027721.1|AZD98645.1|3001218_3002115_+|hypothetical-protein
MPPSIPPCNIPSSAQAPRLPVSAAAGLGLRRALLDALNTAPAGAFDFLELAPENWIGIGGAHGAALRALAERYPLSCHGLSLSLGGPAPLDLGFLREVRQFLERFKVPLYSEHLSYCGDDGHLYDLLPLPFTEEAVRHVAARIRQAQDVLGRRLAVENVSYYAAPRQDMDELAFTNAVLAEADCDLLLDVNNLYVNSVNHGFEPQAFLAGLPPERVVAMHVAGHYDQSASLKIDTHGAPVKPVVWDLLARAYQLFGVQPTLLERDFNFPPFAELLGELDSIRRLQADACQAQGRLAHG
>CP027721.1|AZD98644.1|3000766_3001153_+|hypothetical-protein
MFKLSNVSNVALGLALVGGLGLSTAASALSMTELSQGYTLAAADGVKTSTEGKCGEDKFAKTDTNHDGKVSREEFIAAAPERAAEFDKIDANHDGAISLSEAKQYLAAKAGSAEGKCGEGKCGAAIES
>CP027721.1|AZD98643.1|2999639_3000572_+|GDP-mannose-pyrophosphatase-NudK
MQATPVRITAEEMLSDNWYLLKKYSFDLQRRDGSWQAQTREVYDRGNGATILLYNRERRTVLLIRQFRMPTYVNDHSGYLIETAAGLLDNASPEARIRLEAEEETGYRVGAVQKVYEAFMSPGSVTERLHFFIGEYSPDDRIGDGGGLEEEGEDIEVLELGYQQALDMVRSGEIVDGKTIMLLQYLELRLMPSRRLTILVAAPRYSGAEDPAALAQQVANLDDCAARLFEAGHSPVFGQWLGLAAEDSSAAGEPGARFQERARQQLQRCDALLRIGGACASADALVAMGERLGLPVYRSLQDIPRCTSAS
>CP027721.1|AZD98642.1|2998981_2999602_+|Transcriptional-regulator,-AcrR-family
MDTIDLLERCYPGRRAELKRDILRRALACFNEQGIEATTIEMIRAACDTSVGAIYHHFGNKEGLVAALFFAALDDQAGLRERYMSDAQTLEQGVQALVHSYVDWVDAQPEWARFQFQARYAVAKGPFAEELASRNKARNRQLREWLTAHTRADELPRIPAELLPSLIVGQAENYCRAWLSGRVQSSPGTYRQELAEAAWRSIGAHQ
>CP027721.1|AZD98641.1|2998389_2998830_-|hypothetical-protein
MSQVLSMFSAAGPEKFSQMACQMAPYFSTINPLIAELSAGRSVVRVPFRKEITNHLGTVHAIALCNAAELAAGVMTDVSIPAGARWIPKGMTVEYLAKAKTSVRAVADGGAVDWSSSGDKIVAVEIYDEEDLKVFSARITMNVKTA
>CP027721.1|AZD98640.1|2997134_2998331_+|Short-chain-alcohol-dehydrogenase-family
MVIKPRVRGFICVTTHPVGCEANVKQQIDYVTEQGTIDAGPKNVLVLGASTGYGLAARITAAFGCGANTLGVFFERGSVDGKLGTAGWYNTAAFHKFAEEKGLYAKSINGDAFSDEVKRQTIETIKRDLGKIDLVVYSLAAPRRTHPKTGEVLSSTLKPLGKSVTLRGVDTDKEIVKETTLQPATQEEIDGTVAVMGGEDWQMWIDALHEAGVLAEGAKTTAFTYLGEKLTHDIYWNGSIGEAKKDLDQKVIGIRKELSELGGDARVSVLKAVVTQASSAIPIMPLYLSLLFKVMKEQGSHEGCIEQVYGLYKDSLYNPNPIIDQEGRLRADYKELEPAVQDRVKQLWDEVTSENLYQMTDFTGYKQEFLRLFGFEIDGVDYEADVDPDVKIANLIQV
>CP027721.1|AZD98639.1|2995635_2996925_+|FAD-dependent-oxidoreductase
MSQDFLESYYEATVEKTAYPALGGRVETRVCILGGGLAGLSTALGLAERGVKDVVILESHTVGHGASGRNGGFVFGGYCLGNAELLKTLGREEARRLYRLTIDAVELIRQRVRQYGIQCDLTDRGVLLANWFNDPARLEKPRQLMKEVYGVDWQYVPPGELREKLKTERYFGALFESNAFHFHPLKYVYGVAAAVAGYGIDIHEHSAALAIERQGGKYLVKTAGGEVLAEQVVFAAGGYARGLYRPVERATLPIATYVVATEPLGEALKDSINCESAIYDTRFAFDYYRPLADSRILWGGRISILNRGPQAIAGLLKADLVTVYPQLADVEIEYAWGGLMSYGRQQMAQIGRDDNGVWHAVGFGGHGMAPTTVAGEVLADAIAKAIPIPQGFGRFGLVPTFGLAGLVAAQATYTAYQALDAYDAHRLNK
>CP027721.1|AZD98638.1|2994046_2995636_+|Lysine-specific-permease
MTDSTKVPGACDMAGDFHSEKTTGGLKRTLTPRHLSMIAIGGSIGTGLFVASGSTIAQSGPGGALLAFVVIGAMVFFLMTSLGELASCMPVTGSFSTYASKYVDESFGFALGWNYWYAWAVTIAVDLVAAQIIMAYWFPDVPGYIWSAGFLLIITALNMASVRLFGESEYWFALIKVITILLFIAVGVLMLFGILSGGENAGPRLWLIGDAPVVGGLGALVGVAMIVGFSFQGTEFVGIAAGETRDPGKNVPRAVRQIFWRILLFYVLTILIIGLLIPYNDPSLLRNGVSDIRVSPFTLIFERADMLGAAAVMNAVILTSVLSAGNSGMYASSRMLYSLALEGKAPAIFARLSASGTPRWALLATATVAALCFLTFIFSPGQIYNWLLNTSGMLGFIAWLGIAVSHYRFRRGYVRQGNDLGNLPYVSRFFPFGPIFAFVLCLCVTLGQNYQALLGDSIDWAGLTATYIGLVLFLVIWLVHKVISGSRFVRFDDMSFSMIRSKSECDLPAESAMNEKVGLPVRMTQVGAK
>CP027721.1|AZD98637.1|2991101_2993666_+|c-di-GMP-phosphodiesterase
MHAVAAMDMSVGSTTGEEAADFFAQTLEQANDAVVIIDDRNQVVFFNAAAERFWGCQRHEVLGSEVGTLVPIPIRSRNDGETGINKIIGTSRDVCITRKDGEERWGAMAISKITLQGRILYAAFFKDVTQTRLKDIEQRLLSMSVNASSSATCIVDADGRLIYINDGLVRLLGYSREELLERSPQMFFVADTPGEAQADELHLESILSGQPHEACGLVSKRNGQRLWVHVCSAPVFDAKGRIGNIVIVFTDITRSRLPEVLQDKVIGALLQELPLESVLTLLCQEIERLAPEVVVSILSVDEQGLLHHLASPGLPADYARAMEGLPIGPAAGSCGTAAFRGEPVLVTDIDTDPLWADYRWLAQQAGVRACWSMPVRNSGGRVCATFALYFRESRKPDTTHAHLIMTGTYLCMLALEREEARQSIQRMALSDALTGLPNRSSLLAEANRSLAEVALEQGELAVLYVDLDRFKQVNDALGHASGDELLKVMAQRLRSVLRESDIVGRLSGDEFVLVLPRMNAARVTAFIERLMLTLGAPADIAGTAMVLSASVGVSLYPSDGQDMESLLHCADIAMYQAKRTERGGFRFFLEEMDQLAQQRLQLETALRQALTSDGLHLVYQPQIDLRTNGLVGVEALARWEHPSLGTIAPAQFIALAEECGLINYLSQWVLCEACEQLARWRRSGIRVPSISVNLSPINFHNFNLAALIARQLQRCGLQPADLCVEVTEGVFLCSNPTTEQTLQDLHTLGVRLAIDDFGAGYSSLGYLRRLPISELKLDQSFVEELEHDATCRALSEAVIGIGKGLSLRVVAEGIEHAAQRDILQARGYDVGQGQLFSSPMPARVFGQWFVGWQR
>CP027721.1|AZD98647.1|3004063_3004570_-|DoxX-family-protein
MILTLSSALDGLQRQLNRVSPWVALLSLRLLLAWEFFESGLEKWQGENWFQEIQSAFPFPFDQLPASLNWQLSMWAELLCALALLLGLGTRFAALVLIVVTVVATAAVHWPADWSTLSELAQGYAISNKGHGNFKLPVIYLAALLPLLFQGPGKLSLDALIGRLRHRR
>CP027721.1|AZD98648.1|3004669_3005305_-|Inner-membrane-protein
MPTQSLPSRFHGWRLFSLLAAAVLLMTALILLLEPDLVEATRSAIRATARSSFVLFLLAFTASAFAVLLPSPLSQALVRERRFIGLAFAFSHLVHALLIYSYGQLNPEFWPGRSTLGNLPGSVGYLFILLLTLTSFKGPAALLSRVAWKRLHTTGMWVIAAIFAFSNFKRIPLSAWYLLPFAITCSAMTINLLGKLAQANKRRQRQALSPR
>CP027721.1|AZD98649.1|3005421_3006741_-|Sensor-histidine-kinase
MKLALHWPRTLASRLSLIFLIGLALAQGLSFAAQSYERYQSAKMTMLGNLESDVSTSIAILDRLPAAERPAWLQRLQRRNYGYLLSAGEPGQPLDGEDVPVSVYSIKNALGRDYDLAFNNIPGPRQHYQAHLRLADGSPVTIDVRPALTPMSPWLPAVLLGQLLVLILCAWLAVRIAVRPLTRLAQAVDSLDPNTHGVHLDEKGPIEVVHAAKAFNALQARIGAYLKERMQLLAAISHDLQTPITRMKLRAEFMDESAEKDKLWNDLSEMEHLVREGVAYARSIHGATEASCRIDLDAFLDSLVFDYQDTGQDVELTGKNGALIDTRPHALRRVLVNLVDNALKFSGAARIEVQAQAGDRLSVKVLDRGPGISEEQLAEVLKPFYRVESSRNRDTGGTGLGLAIAQQLAVALGGSLRLSNREGGGLCAELILVSSKASL
>CP027721.1|AZD98650.1|3006737_3007478_-|Transcriptional-regulatory-protein-ompR
MDHVDHVLIVDDDREIRELVGNYLKKNGLRTTVVADGRQMRSFLETTPVDLIVLDIMLPGDDGLLLCRELRAGKHKATPVLMLTARNDETDRIIGLEMGADDYLVKPFAARELLARINAVLRRTRMLPPNLVVTESGRLLGFGRWRLDTTARHLLDQDGTMVALSGAEYRLLRVFLDHPQRVLNRDQLLNLTQGRDADLFDRSIDLLVSRLRQRLLDDAREPAYIKTVRSEGYVFSLPVEILEAAS
>CP027721.1|AZD98651.1|3007770_3008034_+|hypothetical-protein
MKRTALCAACLFAALNICTLSARAESTVQAQTYRYGTQLDIQKVLSMTEDAEPSCGVVNARMTYLDSQGRTQALDYRKFANNCNDGN
>CP027721.1|AZD98652.1|3008078_3008330_+|hypothetical-protein
MNALKSSLLALTLTLAGVAVDASAADSSCATCFQLSPLSSASPLKAATLKASTLKASTLQTHSWLAEGGYERTPQGMRADHQA
>CP027721.1|AZD98653.1|3008401_3009622_+|DipZ-protein
MLLIAFLGGVLTILSPCILPVVPFLFARADRSRGSLLLTLGGMALTFALVSSLAVVSSDWIVRANGIGRQLALVVLGLFALSLIFARFGNWLARPWVSLGNRLDGLRLDRARKFSGPLAALLLGVATGLLWAPCAGPILGVILTGAMLQGASAQTSLLLLAYGLGSALSLGLLIFAGRGLVNRLKPSLPATAWLRRAAGYLVLLAVVAIGSGVDDRLLASTSSQGGAALEQGLLKSVPKALDYLIDKAGAAPVETLPSKGPMPSLSGAVQWLNSPPLDAEALRGKVVLVDFWTYDCINCQHSLPYVNAWAKKYAKDGLVVIGVHTPEYAFEKVIDNVKAQVRKLDIGYPVAIDNDYAIWRAFDNQYWPAHYFIDARGQVRYSHFGEGSYDAQEQVIQQLLREANAS
>CP027721.1|AZD98654.1|3009835_3010150_-|hypothetical-protein
MMVWAVIFGMGLLVFLNRYVFLEPRLPVRLSSNARQFLGFAVPGMLTAICGPIVFMPEHQLNLAYDNPYLISSLVAIVLVIYTRNTLLSMLLSMAFFFLLRWWL
>CP027721.1|AZD98655.1|3010146_3010845_-|hypothetical-protein
MSSVHLPRAAFLRGAVAIMPLSLATAPWGLLAGSMAIEANLTPLQGQGLSSIVFAGAAQLVAIGMLKGGAGIFSILLTTLLLTSQHLLYGMSLRSVISPLPGRWRVGLGFLLTDELFALTSQHDKQQFDRWYALGVGLTFYIAWNLFTLAGIVLGRAIPGLEHLGLDFSIAATFIALITPLVRNVPTVVCVAVSLFCSVLLSYWQWGSALVLSGLLGMTAGFLCNKFYRERT
>CP027721.1|AZD98656.1|3011285_3011942_+|Ribonuclease-precursor
MRKLFATAALAALMICTVGVSQAREARQQRDSVAGVFDYYLLSLSWSPTFCLTHPENEQCSGKGYGFVLHGLWPQYAKGGWPESCPPLTQLTAEERAKGLTLFPTAKLMEHEWSKHGTCSGLGAMGYLDTSDQALGKVKIPEVLEPSTTVHYFEAREIEQLFRQANPGIPDKGVAVLCSGPELSEVRVCLDKNLGFGACGKGVRTQCRKGDIRVPPIR

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Crispr_ID: CP027721_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027721_2

3013755-3013864

Orphan

Consensus_repeat	Method
GCTCCTACAGAAGATGTCTTCGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027721_2

>merge|CP027721|2|3013755-3013864|CRISPRCasFinder
GCTCCTACAGAAGATGTCTTCGGGCAGTTTGCGTGCGAAGTGTTGTGTCAGGCACACCGCGTTGCTGCAATCGCCGGCAAGCCTGGCTCCTACAGAAGATGTCTTCGCGC

>CP027721|2|2|3013755-3013864|CRISPRCasFinder
GCTCCTACAGAAGATGTCTTCGGGC	AGTTTGCGTGCGAAGTGTTGTGTCAGGCACACCGCGTTGCTGCAATCGCCGGCAAGCCTG
GCTCCTACAGAAGATGTCTTCGCGC

Protein	Signature genes	Signature genes Name	Protein_function
CP027721.1\|AZD98661.1\|3015091_3016801_-\|Sodium-dependent-phosphate-transporter	unknown	unknown	gnl\|CDD\|224202
CP027721.1\|AZD98656.1\|3011285_3011942_+\|Ribonuclease-precursor	unknown	unknown	gnl\|CDD\|238513
CP027721.1\|AZD98665.1\|3020928_3022086_-\|Putative-acid--amine-ligase-YgiC	unknown	unknown	gnl\|CDD\|367631
CP027721.1\|AZD98653.1\|3008401_3009622_+\|DipZ-protein	unknown	unknown	gnl\|CDD\|239310
CP027721.1\|AZD98662.1\|3016822_3017038_-\|hypothetical-protein	unknown	unknown	unknown
CP027721.1\|AZD98655.1\|3010146_3010845_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224215
CP027721.1\|AZD98659.1\|3013893_3014679_-\|hypothetical-protein	unknown	unknown	unknown
CP027721.1\|AZD98660.1\|3014750_3015104_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378473
CP027721.1\|AZD98664.1\|3020212_3020497_-\|hypothetical-protein	unknown	unknown	unknown
CP027721.1\|AZD98668.1\|3023278_3023929_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371191
CP027721.1\|AZD98666.1\|3022097_3022814_-\|putative-integral-membrane-protein	unknown	unknown	gnl\|CDD\|377691
CP027721.1\|AZD98651.1\|3007770_3008034_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371321
CP027721.1\|AZD98649.1\|3005421_3006741_-\|Sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP027721.1\|AZD98657.1\|3012028_3012943_+\|L-serine-dehydratase	unknown	unknown	gnl\|CDD\|107209
CP027721.1\|AZD98667.1\|3022834_3023263_-\|putative-membrane-protein	unknown	unknown	gnl\|CDD\|226289
CP027721.1\|AZD98654.1\|3009835_3010150_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226827
CP027721.1\|AZD98658.1\|3013006_3013636_+\|putative-amino-acid-efflux-protein	unknown	unknown	gnl\|CDD\|224199
CP027721.1\|AZD98663.1\|3017205_3019923_-\|Mg(2+)-transport-ATPase,-P-type	unknown	unknown	gnl\|CDD\|237914
CP027721.1\|AZD98652.1\|3008078_3008330_+\|hypothetical-protein	unknown	unknown	unknown
CP027721.1\|AZD98650.1\|3006737_3007478_-\|Transcriptional-regulatory-protein-ompR	unknown	unknown	gnl\|CDD\|181883

Protein	Function_ID	Function_description	E-value
CP027721.1\|AZD98661.1\|3015091_3016801_-\|Sodium-dependent-phosphate-transporter	gnl\|CDD\|224202	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism].	9.69394e-145
CP027721.1\|AZD98656.1\|3011285_3011942_+\|Ribonuclease-precursor	gnl\|CDD\|238513	cd01062, RNase_T2_prok, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the prokaryotic RNase T2 family members.	3.64899e-72
CP027721.1\|AZD98665.1\|3020928_3022086_-\|Putative-acid--amine-ligase-YgiC	gnl\|CDD\|367631	pfam03738, GSP_synth, Glutathionylspermidine synthase preATP-grasp. This region contains the Glutathionylspermidine synthase enzymatic activity EC:6.3.1.8. This is the C-terminal region in bi-enzymes. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design. This region, the pre-ATP grasp region, probably carries the substrate-binding site.	0
CP027721.1\|AZD98653.1\|3008401_3009622_+\|DipZ-protein	gnl\|CDD\|239310	cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.	1.60379e-78
CP027721.1\|AZD98655.1\|3010146_3010845_-\|hypothetical-protein	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	2.63674e-56
CP027721.1\|AZD98666.1\|3022097_3022814_-\|putative-integral-membrane-protein	gnl\|CDD\|377691	pfam06693, DUF1190, Protein of unknown function (DUF1190). This family consists of several hypothetical Enterobacterial proteins of around 212 residues in length and is known as YjfM in Escherichia coli. The function of this family is unknown.	5.7636e-23
CP027721.1\|AZD98668.1\|3023278_3023929_-\|hypothetical-protein	gnl\|CDD\|371191	pfam10679, DUF2491, Protein of unknown function (DUF2491). This is a bacterial family of uncharacterized proteins.	6.69235e-41
CP027721.1\|AZD98651.1\|3007770_3008034_+\|hypothetical-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	5.51398e-22
CP027721.1\|AZD98649.1\|3005421_3006741_-\|Sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.13403e-45
CP027721.1\|AZD98660.1\|3014750_3015104_-\|hypothetical-protein	gnl\|CDD\|378473	pfam10686, DUF2493, Protein of unknown function (DUF2493). Members of this family are all Proteobacteria. The function is not known.	1.86764e-18
CP027721.1\|AZD98667.1\|3022834_3023263_-\|putative-membrane-protein	gnl\|CDD\|226289	COG3766, COG3766, Predicted membrane protein [Function unknown].	9.4539e-34
CP027721.1\|AZD98654.1\|3009835_3010150_-\|hypothetical-protein	gnl\|CDD\|226827	COG4392, COG4392, Predicted membrane protein [Function unknown].	4.32441e-27
CP027721.1\|AZD98658.1\|3013006_3013636_+\|putative-amino-acid-efflux-protein	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.74145e-35
CP027721.1\|AZD98663.1\|3017205_3019923_-\|Mg(2+)-transport-ATPase,-P-type	gnl\|CDD\|237914	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.	0
CP027721.1\|AZD98657.1\|3012028_3012943_+\|L-serine-dehydratase	gnl\|CDD\|107209	cd06448, L-Ser-dehyd, Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.	4.04657e-110
CP027721.1\|AZD98650.1\|3006737_3007478_-\|Transcriptional-regulatory-protein-ompR	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	5.82777e-75

>CP027721.1|AZD98658.1|3013006_3013636_+|putative-amino-acid-efflux-protein
MDATTLFLYVVTVSAVMMTPGPSMLLALNNGATHGMRIAGCGMAGAMLSDLLLIGAVGCGLGALLQASEQLFSIVKWGGAAYLLYLAWVLWKAPTQALAAQTGGSASSGRGAFVRSLLVGLSNPKGLLFFSAFLPQFVRPDEPVAQQYLILALVSTAINCVMMATYAFGGRYAMRTFSARAMLWINRSCAGMLAVLAVGLSLYRRSDIR
>CP027721.1|AZD98657.1|3012028_3012943_+|L-serine-dehydratase
MLHIRTPLILHPGLSTATRRIWLKLENLQPSGSFKMRGLGLLCSQAAQQGKRRVVCPSGGNAGLATAVAAASLGLQACIVVPQTTPQTTRERIARAGAEVLVHGQVWDQANERALQLSSDADSEYVPAFDHPVLWQGHSSMVDEILEDCPQVDTIVASVGGGGLLAGILTGLLRHQRQDCRIIACETTGSASFAAGLAAGHPVKLAKIDTVASSLGAAQVAAWPLQQIQGFAYQSLVLSDAEAILGVVRYADDLRQLVEPACGVSLAVAYLDHPAIAAARDVVIVVCGGVSISARQVADWGASL
>CP027721.1|AZD98656.1|3011285_3011942_+|Ribonuclease-precursor
MRKLFATAALAALMICTVGVSQAREARQQRDSVAGVFDYYLLSLSWSPTFCLTHPENEQCSGKGYGFVLHGLWPQYAKGGWPESCPPLTQLTAEERAKGLTLFPTAKLMEHEWSKHGTCSGLGAMGYLDTSDQALGKVKIPEVLEPSTTVHYFEAREIEQLFRQANPGIPDKGVAVLCSGPELSEVRVCLDKNLGFGACGKGVRTQCRKGDIRVPPIR
>CP027721.1|AZD98655.1|3010146_3010845_-|hypothetical-protein
MSSVHLPRAAFLRGAVAIMPLSLATAPWGLLAGSMAIEANLTPLQGQGLSSIVFAGAAQLVAIGMLKGGAGIFSILLTTLLLTSQHLLYGMSLRSVISPLPGRWRVGLGFLLTDELFALTSQHDKQQFDRWYALGVGLTFYIAWNLFTLAGIVLGRAIPGLEHLGLDFSIAATFIALITPLVRNVPTVVCVAVSLFCSVLLSYWQWGSALVLSGLLGMTAGFLCNKFYRERT
>CP027721.1|AZD98654.1|3009835_3010150_-|hypothetical-protein
MMVWAVIFGMGLLVFLNRYVFLEPRLPVRLSSNARQFLGFAVPGMLTAICGPIVFMPEHQLNLAYDNPYLISSLVAIVLVIYTRNTLLSMLLSMAFFFLLRWWL
>CP027721.1|AZD98653.1|3008401_3009622_+|DipZ-protein
MLLIAFLGGVLTILSPCILPVVPFLFARADRSRGSLLLTLGGMALTFALVSSLAVVSSDWIVRANGIGRQLALVVLGLFALSLIFARFGNWLARPWVSLGNRLDGLRLDRARKFSGPLAALLLGVATGLLWAPCAGPILGVILTGAMLQGASAQTSLLLLAYGLGSALSLGLLIFAGRGLVNRLKPSLPATAWLRRAAGYLVLLAVVAIGSGVDDRLLASTSSQGGAALEQGLLKSVPKALDYLIDKAGAAPVETLPSKGPMPSLSGAVQWLNSPPLDAEALRGKVVLVDFWTYDCINCQHSLPYVNAWAKKYAKDGLVVIGVHTPEYAFEKVIDNVKAQVRKLDIGYPVAIDNDYAIWRAFDNQYWPAHYFIDARGQVRYSHFGEGSYDAQEQVIQQLLREANAS
>CP027721.1|AZD98652.1|3008078_3008330_+|hypothetical-protein
MNALKSSLLALTLTLAGVAVDASAADSSCATCFQLSPLSSASPLKAATLKASTLKASTLQTHSWLAEGGYERTPQGMRADHQA
>CP027721.1|AZD98651.1|3007770_3008034_+|hypothetical-protein
MKRTALCAACLFAALNICTLSARAESTVQAQTYRYGTQLDIQKVLSMTEDAEPSCGVVNARMTYLDSQGRTQALDYRKFANNCNDGN
>CP027721.1|AZD98650.1|3006737_3007478_-|Transcriptional-regulatory-protein-ompR
MDHVDHVLIVDDDREIRELVGNYLKKNGLRTTVVADGRQMRSFLETTPVDLIVLDIMLPGDDGLLLCRELRAGKHKATPVLMLTARNDETDRIIGLEMGADDYLVKPFAARELLARINAVLRRTRMLPPNLVVTESGRLLGFGRWRLDTTARHLLDQDGTMVALSGAEYRLLRVFLDHPQRVLNRDQLLNLTQGRDADLFDRSIDLLVSRLRQRLLDDAREPAYIKTVRSEGYVFSLPVEILEAAS
>CP027721.1|AZD98649.1|3005421_3006741_-|Sensor-histidine-kinase
MKLALHWPRTLASRLSLIFLIGLALAQGLSFAAQSYERYQSAKMTMLGNLESDVSTSIAILDRLPAAERPAWLQRLQRRNYGYLLSAGEPGQPLDGEDVPVSVYSIKNALGRDYDLAFNNIPGPRQHYQAHLRLADGSPVTIDVRPALTPMSPWLPAVLLGQLLVLILCAWLAVRIAVRPLTRLAQAVDSLDPNTHGVHLDEKGPIEVVHAAKAFNALQARIGAYLKERMQLLAAISHDLQTPITRMKLRAEFMDESAEKDKLWNDLSEMEHLVREGVAYARSIHGATEASCRIDLDAFLDSLVFDYQDTGQDVELTGKNGALIDTRPHALRRVLVNLVDNALKFSGAARIEVQAQAGDRLSVKVLDRGPGISEEQLAEVLKPFYRVESSRNRDTGGTGLGLAIAQQLAVALGGSLRLSNREGGGLCAELILVSSKASL
>CP027721.1|AZD98659.1|3013893_3014679_-|hypothetical-protein
MSKYNPSRNNRFASLTRDLPPAKRRMLRRNLMFVTLTLSLIGLLTLVAKANAAGGAYGVDDGAINAPGECNLDIWYQSLRHQGSNHGAVFSPACTFAGLPWLQVGAALERSREDGHGETQLSPQLKAQLWNREDLGLQLALATSAHFALDRGHAFDGGDISLPLTYQPLQSLRLNFNAGWAHAYDDGQQNHRWTWGSGFEYDLGERLTLVAERYGQRGGEQAWQAGPRLHLGANLDLDLVLGGQLNEGRDRWLTSGATLRF
>CP027721.1|AZD98660.1|3014750_3015104_-|hypothetical-protein
MRVLICAGRHYADIQRCRRVLDAFQRLHEVQVLIHGGNQFLGAEIEDWGREIGADIVRYPANWQLHGKLAERLRNAFMLRDSRPDLVIVLPGGDDTEELVALARAAGIQTLSVSDWQ
>CP027721.1|AZD98661.1|3015091_3016801_-|Sodium-dependent-phosphate-transporter
MSGTTLLINLAGSIALLLWGTQMISSALLRGFGTQLRQWLGQHLNNRWMALLSGIAITGVLQSSTAVSLMASSFTATGTLGLAPALAVMLGANIGSTLVVQLLSVDISILTPLVLLAGFIVFRLRDDSRFESLGCALIGLGLMLLALRMLGSTLGEVEGTPVFAALMRGLDGDLLIALLTAALLTWLCHSSVAVVLLVASLAATGLLSSVTAMTLVLGINIGGALPSLLNADSSVARRLPLGNLLVRLCGAAALLPCLPWIAQSAPVAALDASLQVVYLHSLFNLVLALLFIGLTGPMATLLNRLLPEPPRDVDPGMPHYLDEAGLAVANIGLSNAAREALRLADMLSLMLDRVLRLFQASTPAGADEVRRIDQSLDLLSAAIRAYLADIGQDGISDQDADRAQEILLFVINLEHAGDILSSSLTQLAARRLRRGEQFSVFELDCIEPLHQAVVDSLSLAITVFLREDLANAHQLVNRKELVRRLEADASREHFRSLREDRTAWAESGDIFQRVLRDYRRVHHHIAALAYPALERAGERDLDNAELGDVLLDNPLSIQPTAQERARCVS
>CP027721.1|AZD98662.1|3016822_3017038_-|hypothetical-protein
MKPITELLARGERTLRALLVSTLEGIAALITLVGIRLYARSLLSRAAIRLLLGLASAIHRRCIRLLRSAKP
>CP027721.1|AZD98663.1|3017205_3019923_-|Mg(2+)-transport-ATPase,-P-type
MTTVKTRTSSSQNPTRDDTRLSMRAAREAQNSLGVTLDNVKSNANGLTELDAEGRLQRDGFNEVAHDRPPHALVQLLQAFNNPFIYVLMTLTGISFFTDFWLPLQSGEETDLTGVIIVLVMVLVSGLMRFWQEYRSAKAAEALKAMVRTTATVLRREQMGMKTARREVPMRDLVVGDIVQLSAGDMIPADIRLIESRDLFISQAVLTGEALPVEKYDTLGAVQEKSAHRTAAADQQDLLDLPNICFMGTNVVSGTATAVVVATGSRTYFGSLARSIVGSRTQTAFDRGVNSVSWLLIRFMLVMVPVVLLINGFTKGDWAEAFMFALAVAVGLTPEMLPMIVSANLAKGAAAMAKRKVVVKRLNAIQNFGAMDVLCTDKTGTLTQDRIILEHHVDISGSRCDQVLQLAWLNSYHQSGMKNLMDRAVVSYAENNPKFNAPDAWSKVDELPFDFVRRRLSVILADASGHHLLVCKGAVEEMLDTATRVRQDGVTVALDAGRRAALLELAEEYNRDGFRVLLVGTRDLAPGQTRQQYSASDERELIIEGFLTFLDPPKETAGPAIAALRENGVTVKVLTGDNPIVTAKICREVGLEVGQPLLGRDIEHMDDAVLARLVEERTVFAKLTPLQKSRVLKALQANGHTVGFLGDGINDAPALRDADVGISVDSGTDIAKESADIILLEKSLMVLEEGVIKGRETFGNIMKYLNMTASSNFGNVFSVLVASAFIPFLPMLAIHLLLQNLMYDISQLSLPWDKMDKEFLRKPRKWDAKNIGRFMLWIGPTSSIFDITTYALMWFVFAANSVEMAALFQSGWFIEGLLSQTLVVHMLRTQKIPFIQSTAALPVMLMTGLVMALGIYVPFSPLGEMVGLVPLPWEYFPWLVGTLLCYCIVAQTMKTLYIRRFKQWF
>CP027721.1|AZD98664.1|3020212_3020497_-|hypothetical-protein
MNFKSTVMPGVRAFASTMRVKPCAERAGVSRVATLYSTPSSQTRPRANWRVCPVTCRLQQRWSFDDSQDPQSRSLAGLLMRAGLLLSLSRDSHF
>CP027721.1|AZD98665.1|3020928_3022086_-|Putative-acid--amine-ligase-YgiC
MKKIPCNERPDWRQTAEKLGFLFHTIDGEAYWDESAYYQFSLKQIEDDLEDPTTEIHEMCMDLVDRVVRSEALLDRLSIPPAFYDMIRTSWLEGHPHLYGRLDFSYNGQGPAKLLELNYDTPTSLYETAAFQWGWLEQNIERGVLPRHADQFNSIDTRLHQAFAQLGIERPFYFASMKDSVEDRATTDYLRLIAEKAGIESRHIDVEDIGLTAEGRFVDLQDRWIPHLFKLHAWEFIFHEPFGAAIAASDTQFFEPAWKSILSNKGILPLLWEAHPGHPNLLETHLDLHPQRDVPKGWVRKPFFSREGANIELRTPQDEVVKEDGPYTDAPYILQSFAPLPRFGDSYTLIGSWVIGDQAAGIGVREDDSLITKDSSRFLPHLILD
>CP027721.1|AZD98666.1|3022097_3022814_-|putative-integral-membrane-protein
MKRSQYVQLSLAASVALAISGCNSEPETLAVQQKFNFQSVQECVDGKIAVDVCSDAYIKAMAEHRAQAPVYDNQADCDADFVENWCQIDSNGKFVPKLGGFEINAQGAFTREQLAAAGVSPGAGQGSSLSSIDSGLLTGLLIGNLLSGGSRNYYSEPVYRYRDDRGSYANSTLNQRIASGSTFSKSRQAQSGSGFRTTTRPMSVSSSTSRGGFGSQASARSGWGGSSSSSWSSGRSSS
>CP027721.1|AZD98667.1|3022834_3023263_-|putative-membrane-protein
MLEALSISLNKFAVVGFLTYILGAAVLFALFQFVYTRLTPHKEFQLIREGNISAAIALGGAIIGFAIPASNVIAYSISLLDFAVWALIAAVVQLLAFLMTSLVLKGTSQRIRNGEIAAGIYVAAVAISVGLLNAACMTPSQN
>CP027721.1|AZD98668.1|3023278_3023929_-|hypothetical-protein
MGWFKRFLGLQAPATTSSSFATGPLGLSMGAGIRFDASLKLLLADNSRVAIPGDQAVYSEGLVDLGQSEWLSRYYLDDEDYWLQVHTSGGIDGQVKSIILFNYLSNQAVNSEAELRRLAGPDSLIGQPTYSLDGVEYQREWGTEAGQTELVPLREQVSKPDETFAFESHSMLYARDTGLTNRREFLLFSVEQYADGSVSLVTSLGISLYMTDLQTL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1353106 : 1445993

Pseudomonas_phage(40.38%)

tail,plate,protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZD97117.1\|1353106_1354459_+\|protease	Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage	NA	NA	NA	NA
AZD97118.1\|1354533_1356921_+	Outer membrane protein assembly factor YaeT	NA	NA	NA	NA
AZD97119.1\|1356966_1357470_+	Outer membrane chaperone Skp, precursor	NA	NA	NA	NA
AZD97120.1\|1357473_1358529_+	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	NA	NA	NA
AZD97121.1\|1358638_1359079_+	3-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
AZD97122.1\|1359075_1359852_+	Acyl-ADP--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA
AZD97123.1\|1359854_1360985_+	Lipid-A-disaccharide synthase	NA	NA	NA	NA
AZD97124.1\|1360996_1361629_+	Ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.7e-27	38.9
AZD97125.1\|1361698_1365223_+	DNA polymerase III alpha subunit	A0A2L1IZ23	Streptomyces_phage	1.4e-195	38.0
AZD97126.1\|1365363_1366311_+	Acetyl-coenzyme A carboxyl transferase alpha chain	NA	NA	NA	NA
AZD97127.1\|1366430_1367759_+\|tRNA	tRNA(Ile)-lysidine synthetase	NA	NA	NA	NA
AZD97128.1\|1367804_1367948_+	hypothetical protein	NA	NA	NA	NA
AZD97129.1\|1368033_1369665_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	6.9e-158	53.5
AZD97130.1\|1369670_1370516_+	2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase	E3T537	Cafeteria_roenbergensis_virus	1.2e-49	42.8
AZD97131.1\|1370673_1371963_+	Enolase	A0A1X9I5Z8	Streptococcus_phage	9.0e-137	59.2
AZD97132.1\|1372135_1372414_+	Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	NA	NA	NA	NA
AZD97133.1\|1372410_1373118_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
AZD97134.1\|1373283_1374180_-	Transcriptional regulator, LysR family, in formaldehyde detoxification operon	NA	NA	NA	NA
AZD97135.1\|1374286_1375399_+	S-(hydroxymethyl)glutathione dehydrogenase	E3SJ82	Synechococcus_phage	8.3e-30	27.2
AZD97136.1\|1375487_1376333_+	S-formylglutathione hydrolase	NA	NA	NA	NA
AZD97137.1\|1376385_1376859_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AZD97138.1\|1376855_1377914_+\|tRNA	tRNA pseudouridine(13) synthase	NA	NA	NA	NA
AZD97139.1\|1377901_1378651_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-68	52.6
AZD97140.1\|1378650_1379328_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.8e-43	52.0
AZD97141.1\|1379618_1380371_+	Murein hydrolase activator NlpD	A0A0S2SXL7	Bacillus_phage	5.7e-06	33.3
AZD97142.1\|1380477_1381482_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
AZD97143.1\|1381886_1382837_+	Mobile element protein	A4PE56	Ralstonia_virus	4.0e-97	57.9
AZD97144.1\|1383299_1383623_-	4Fe-4S dicluster domain	NA	NA	NA	NA
AZD97145.1\|1383765_1386345_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.8e-27	22.0
AZD97146.1\|1386541_1387267_+	Transcriptional regulator	B5TK58	Pseudomonas_phage	1.3e-124	91.4
AZD97147.1\|1388007_1388619_+	hypothetical protein	NA	NA	NA	NA
AZD97148.1\|1388691_1389039_+	Holin	B5TK61	Pseudomonas_phage	1.0e-50	87.7
AZD97149.1\|1389205_1389970_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	8.9e-07	26.8
AZD97150.1\|1390192_1390717_+	hypothetical protein	NA	NA	NA	NA
AZD97151.1\|1390720_1391329_+\|plate	Baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	8.2e-48	59.7
AZD97152.1\|1391342_1391675_+\|plate	Baseplate assembly protein W	A0A2H4JI46	uncultured_Caudovirales_phage	2.3e-36	68.2
AZD97153.1\|1391671_1392667_+\|plate	Phage-related baseplate assembly protein	A0A2H4JC04	uncultured_Caudovirales_phage	1.8e-108	62.9
AZD97154.1\|1392663_1393299_+	Tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	9.9e-44	53.7
AZD97155.1\|1393299_1394862_+\|tail	Prophage long tail fiber protein	A0A1I9KF43	Aeromonas_phage	1.2e-29	40.9
AZD97156.1\|1395397_1395619_+	hypothetical protein	NA	NA	NA	NA
AZD97157.1\|1395621_1396788_+\|tail	Major tail sheath protein	B0ZSG8	Halomonas_phage	1.9e-125	57.2
AZD97158.1\|1396787_1397294_+	hypothetical protein	Q6R4W3	Vibrio_virus	2.1e-25	36.9
AZD97159.1\|1397421_1398003_+	hypothetical protein	B0ZSH0	Halomonas_phage	1.5e-27	39.4
AZD97160.1\|1397999_1398125_+	hypothetical protein	NA	NA	NA	NA
AZD97161.1\|1398131_1400402_+\|tail	Phage tail length tape-measure protein	A2I2Y1	Vibrio_virus	1.3e-34	35.1
AZD97162.1\|1400401_1400785_+\|tail	Unclassified tail protein	A0A2H4JAC8	uncultured_Caudovirales_phage	4.7e-33	53.5
AZD97163.1\|1400777_1400990_+\|tail	P2-like prophage tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	3.9e-21	68.6
AZD97164.1\|1400999_1402019_+\|tail	Phage tail protein D	A0A2H4JH05	uncultured_Caudovirales_phage	1.2e-104	56.8
AZD97165.1\|1402199_1402784_+	hypothetical protein	B5TK65	Pseudomonas_phage	3.1e-76	72.0
AZD97166.1\|1402780_1402963_+	Mu-like prophage FluMu protein GP38	B5TK66	Pseudomonas_phage	6.5e-25	93.3
AZD97167.1\|1402962_1404459_+\|tail	Bacteriophage tail sheath protein	B5TK67	Pseudomonas_phage	7.8e-257	90.8
AZD97168.1\|1404525_1404873_+\|tail	Phage tail tube protein	B5TK68	Pseudomonas_phage	2.9e-58	93.9
AZD97169.1\|1404869_1405166_+\|tail	Phage small tail protein E	B5TK69	Pseudomonas_phage	2.3e-43	94.9
AZD97170.1\|1405296_1407051_+\|tail	Phage tail length tape-measure protein	B5TK70	Pseudomonas_phage	8.5e-45	54.6
AZD97171.1\|1407037_1408276_+\|tail	Phage tail/DNA circulation protein	B5TK71	Pseudomonas_phage	1.7e-180	75.5
AZD97172.1\|1408279_1409320_+\|tail	Prophage tail protein	B5TK72	Pseudomonas_phage	3.8e-162	82.7
AZD97173.1\|1409384_1409894_+\|plate	Prophage baseplate assembly protein V	B5TK73	Pseudomonas_phage	5.8e-79	89.3
AZD97174.1\|1409893_1410292_+	Bacteriophage protein GP46	B5TK74	Pseudomonas_phage	1.7e-65	89.4
AZD97175.1\|1410281_1411322_+	Phage FluMu protein gp47	B5TK75	Pseudomonas_phage	3.0e-167	87.3
AZD97176.1\|1411309_1411909_+\|tail	Prophage tail protein	B5TK76	Pseudomonas_phage	8.5e-106	91.5
AZD97177.1\|1411920_1412778_+\|tail	Prophage tail fiber protein	B5TK77	Pseudomonas_phage	1.5e-23	76.4
AZD97178.1\|1412782_1413424_+	hypothetical protein	B5TK78	Pseudomonas_phage	4.8e-38	62.1
AZD97179.1\|1413807_1415361_+\|tail	Prophage tail fiber protein	A4PE45	Ralstonia_virus	1.2e-37	53.0
AZD97180.1\|1415362_1415833_+	hypothetical protein	A0A2H4EXG4	Aeromonas_phage	3.2e-07	35.0
AZD97181.1\|1415977_1416157_-	hypothetical protein	NA	NA	NA	NA
AZD97182.1\|1416225_1417308_+\|tail	Prophage tail fiber protein	B5TK79	Pseudomonas_phage	1.4e-111	56.6
AZD97183.1\|1417315_1417918_+	Tail fiber assembly protein	B5TK80	Pseudomonas_phage	6.9e-47	49.2
AZD97184.1\|1417939_1418503_+	Lytic enzyme	B5TK83	Pseudomonas_phage	8.9e-89	84.4
AZD97185.1\|1418484_1419021_+	hypothetical protein	B5TK84	Pseudomonas_phage	5.2e-62	72.5
AZD97186.1\|1419103_1419604_+	Nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	6.1e-73	86.7
AZD97187.1\|1419687_1420740_+	RecA protein	A0A0S2MVG1	Bacillus_phage	4.4e-113	60.9
AZD97188.1\|1420748_1421216_+	Regulatory protein RecX	NA	NA	NA	NA
AZD97189.1\|1421261_1422377_-	Decarboxylase family protein	NA	NA	NA	NA
AZD97190.1\|1422860_1423055_+	hypothetical protein	NA	NA	NA	NA
AZD97191.1\|1423056_1423479_-	Putative NADPH-quinone reductase (modulator of drug activity B)	NA	NA	NA	NA
AZD97192.1\|1423668_1424379_+	putative conserved protein YfiP, contains DTW domain	NA	NA	NA	NA
AZD97193.1\|1424713_1425364_+	Transcriptional regulator, LuxR family	NA	NA	NA	NA
AZD97194.1\|1425440_1425803_+	Diacylglycerol kinase	NA	NA	NA	NA
AZD97195.1\|1425799_1426726_-	LysR family transcriptional regulator	NA	NA	NA	NA
AZD97196.1\|1426859_1427639_+	Ferredoxin--NADP(+) reductase	NA	NA	NA	NA
AZD97197.1\|1427711_1428407_-	S-adenosylmethionine-dependent methyltransferase YaeB	NA	NA	NA	NA
AZD97198.1\|1428493_1429264_-	Rhamnolipid biosynthesis 3-oxoacyl-ACP reductase RhlG	NA	NA	NA	NA
AZD97199.1\|1429397_1429859_-	Uncharacterized protein YehS	Q9EYF4	Enterobacteria_phage	8.5e-37	51.3
AZD97200.1\|1429925_1430636_-	Ribosomal large subunit pseudouridine synthase F	NA	NA	NA	NA
AZD97201.1\|1430718_1431192_-	Acetyltransferase	NA	NA	NA	NA
AZD97202.1\|1431298_1432636_-	Ribosomal protein S12p Asp88 methylthiotransferase	NA	NA	NA	NA
AZD97203.1\|1432736_1433006_-	hypothetical protein	NA	NA	NA	NA
AZD97204.1\|1433027_1434869_+	Kup system potassium uptake protein	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	8.0e-78	35.0
AZD97205.1\|1434930_1435881_-	Mobile element protein	A4PE56	Ralstonia_virus	4.0e-97	57.9
AZD97206.1\|1436384_1436660_-	hypothetical protein	NA	NA	NA	NA
AZD97207.1\|1437157_1438453_-	Alanylphosphatidylglycerol hydrolase, periplasmic	NA	NA	NA	NA
AZD97208.1\|1438452_1441101_-	Alanylphosphatidylglycerol synthase	NA	NA	NA	NA
AZD97209.1\|1442039_1443104_+	DNA polymerase IV	NA	NA	NA	NA
AZD97210.1\|1443306_1444260_-	putative lipoprotein	NA	NA	NA	NA
AZD97211.1\|1444277_1445993_-\|tRNA	Prolyl-tRNA synthetase, bacterial type	NA	NA	NA	NA

DBSCAN-SWA_2

3921967 : 3926586

uncultured_Caudovirales_phage(75.0%)

integrase,tail

attL 3915002:3915016|attR 3926699:3926713

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3915002:3915016	attL	NA	NA	NA	NA
AZD99452.1\|3921967_3922762_-	Dam modification methylase	C7BGE1	Burkholderia_phage	1.5e-102	66.5
AZD99453.1\|3922913_3923456_-	hypothetical protein	B5TK84	Pseudomonas_phage	6.5e-28	47.8
AZD99454.1\|3923455_3924007_-	Phage endolysin	A0A2H4JHX4	uncultured_Caudovirales_phage	1.6e-66	67.6
AZD99455.1\|3924030_3925083_-\|tail	Phage tail protein D	A0A2H4JBF6	uncultured_Caudovirales_phage	1.1e-148	75.2
AZD99456.1\|3925139_3925346_-\|tail	Phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	1.6e-19	67.2
AZD99457.1\|3925320_3925809_-	Phage protein U	A0A2H4J875	uncultured_Caudovirales_phage	1.4e-58	65.8
AZD99458.1\|3925889_3926267_+\|integrase	Phage-related integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	6.0e-41	69.8
AZD99459.1\|3926289_3926586_+	Integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	3.5e-20	59.4
3926699:3926713	attR	NA	NA	NA	NA

DBSCAN-SWA_3

4352198 : 4358457

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZD99817.1\|4352198_4352591_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	6.7e-59	84.6
AZD99818.1\|4352594_4352957_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.9e-44	75.0
AZD99819.1\|4352956_4353256_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.1e-32	69.7
AZD99820.1\|4353252_4353588_+\|tRNA	tRNA 2-thiouridine synthesis protein TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	1.9e-46	82.0
AZD99821.1\|4353584_4354586_+	Anthranilate phosphoribosyltransferase like	A0A2H4JBY5	uncultured_Caudovirales_phage	1.2e-165	84.8
AZD99822.1\|4354675_4355683_+	Glutathione S-transferase, omega	NA	NA	NA	NA
AZD99823.1\|4355781_4357176_-	Precorrin-2 oxidase	NA	NA	NA	NA
AZD99824.1\|4357176_4358457_-\|tRNA	Seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.1e-101	55.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027721

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection