CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027749	Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR39 chromosome, complete genome	2 crisprs	DinG,csa3,cas3,PD-DExK,DEDDh,WYL,RT	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027749_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027749_1

410913-411028

Orphan

Consensus_repeat	Method
GGGCTCGTCGCTGTGAGCGTGATGAGCCCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027749_1

>merge|CP027749|1|410913-411028|CRISPRCasFinder
GGGCTCGTCGCTGTGAGCGTGATGAGCCCGGGTGTTAAAGAGGGAATCCCCGGCCTGCCTGTACCAAGGTTCCCGAAACGGGTGGGGCTCGTCGCTGAGAGCGTGATGAGCCCGGG

>CP027749|1|1|410913-411028|CRISPRCasFinder
GGGCTCGTCGCTGTGAGCGTGATGAGCCCGGG	TGTTAAAGAGGGAATCCCCGGCCTGCCTGTACCAAGGTTCCCGAAACGGGTG
GGGCTCGTCGCTGAGAGCGTGATGAGCCCGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP027749.1\|AZE20827.1\|406701_408231_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
CP027749.1\|AZE20826.1\|405278_406565_-\|Murein-hydrolase-activator-EnvC	unknown	unknown	gnl\|CDD\|227278
CP027749.1\|AZE20836.1\|414481_415894_-\|putative-MFS-type-transporter	unknown	unknown	gnl\|CDD\|340927
CP027749.1\|AZE20838.1\|417101_418823_+\|Acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173843
CP027749.1\|AZE20837.1\|416089_416989_-\|Transcriptional-regulator,-LysR-family	unknown	unknown	gnl\|CDD\|176139
CP027749.1\|AZE20823.1\|402186_402942_+\|ABC-type-amino-acid-transport/signal-transduction-system,-periplasmic-component/domain	unknown	unknown	gnl\|CDD\|223904
CP027749.1\|AZE20835.1\|414119_414431_-\|hypothetical-protein	unknown	unknown	unknown
CP027749.1\|AZE20834.1\|413037_414123_-\|Nitrogen-regulation-protein-NtrB	unknown	unknown	gnl\|CDD\|226370
CP027749.1\|AZE20839.1\|418855_420043_+\|L-carnitine-dehydratase/bile-acid-inducible-protein-F	unknown	unknown	gnl\|CDD\|367110
CP027749.1\|AZE20828.1\|408382_408796_+\|Rhodanese-related-sulfurtransferase-YibN	unknown	unknown	gnl\|CDD\|238089
CP027749.1\|AZE20829.1\|408797_409052_+\|Glutaredoxin-3-(Grx3)	unknown	unknown	gnl\|CDD\|274017
CP027749.1\|AZE20842.1\|423808_424924_+\|Methylphosphotriester-DNA--protein-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|225080
CP027749.1\|AZE20841.1\|420903_422430_+\|3-hydroxyacyl-CoA-dehydrogenase-PaaC	unknown	unknown	gnl\|CDD\|236211
CP027749.1\|AZE20831.1\|409811_410267_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223297
CP027749.1\|AZE20832.1\|410331_410706_+\|hypothetical-protein	unknown	unknown	unknown
CP027749.1\|AZE20840.1\|420112_420907_+\|Enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|236162
CP027749.1\|AZE20830.1\|409108_409591_+\|Protein-export-protein-SecB-(maintains-pre-export-unfolded-state)	unknown	unknown	gnl\|CDD\|180234
CP027749.1\|AZE20825.1\|403936_405247_-\|Carboxyl-terminal-protease	unknown	unknown	gnl\|CDD\|223864
CP027749.1\|AZE20824.1\|403014_403773_-\|Putative-periplasmic-protein-YibQ	unknown	unknown	gnl\|CDD\|377404
CP027749.1\|AZE20833.1\|411604_413041_-\|Nitrogen-regulation-protein-NtrC	unknown	unknown	gnl\|CDD\|273818

Protein	Function_ID	Function_description	E-value
CP027749.1\|AZE20827.1\|406701_408231_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
CP027749.1\|AZE20826.1\|405278_406565_-\|Murein-hydrolase-activator-EnvC	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	6.03157e-100
CP027749.1\|AZE20836.1\|414481_415894_-\|putative-MFS-type-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.428e-152
CP027749.1\|AZE20838.1\|417101_418823_+\|Acyl-CoA-dehydrogenase	gnl\|CDD\|173843	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.	4.32313e-149
CP027749.1\|AZE20837.1\|416089_416989_-\|Transcriptional-regulator,-LysR-family	gnl\|CDD\|176139	cd08448, PBP2_LTTR_aromatics_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type regulator similar to CbnR which is involved in the regulation of chlorocatechol breakdown. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.05672e-89
CP027749.1\|AZE20823.1\|402186_402942_+\|ABC-type-amino-acid-transport/signal-transduction-system,-periplasmic-component/domain	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	2.22267e-23
CP027749.1\|AZE20841.1\|420903_422430_+\|3-hydroxyacyl-CoA-dehydrogenase-PaaC	gnl\|CDD\|236211	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated.	0
CP027749.1\|AZE20839.1\|418855_420043_+\|L-carnitine-dehydratase/bile-acid-inducible-protein-F	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	2.41457e-149
CP027749.1\|AZE20828.1\|408382_408796_+\|Rhodanese-related-sulfurtransferase-YibN	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	6.79697e-24
CP027749.1\|AZE20829.1\|408797_409052_+\|Glutaredoxin-3-(Grx3)	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	1.27223e-49
CP027749.1\|AZE20842.1\|423808_424924_+\|Methylphosphotriester-DNA--protein-cysteine-S-methyltransferase	gnl\|CDD\|225080	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism].	2.81408e-81
CP027749.1\|AZE20831.1\|409811_410267_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	1.05147e-88
CP027749.1\|AZE20840.1\|420112_420907_+\|Enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|236162	PRK08138, PRK08138, enoyl-CoA hydratase; Provisional.	5.31143e-161
CP027749.1\|AZE20830.1\|409108_409591_+\|Protein-export-protein-SecB-(maintains-pre-export-unfolded-state)	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	4.26189e-83
CP027749.1\|AZE20824.1\|403014_403773_-\|Putative-periplasmic-protein-YibQ	gnl\|CDD\|377404	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).	2.57061e-92
CP027749.1\|AZE20825.1\|403936_405247_-\|Carboxyl-terminal-protease	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.95839e-143
CP027749.1\|AZE20834.1\|413037_414123_-\|Nitrogen-regulation-protein-NtrB	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	1.36849e-164
CP027749.1\|AZE20833.1\|411604_413041_-\|Nitrogen-regulation-protein-NtrC	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0

>CP027749.1|AZE20832.1|410331_410706_+|hypothetical-protein
MLRVFGSLAIFGVMVGLMIGRLTTPDPTELQEVQVQPNALVVWFNNEPKVHGEHIDGAVALLFEAEGRAQKGQLKINDKDANWRVRTTEEGLLLNVVAARALHGEWSGSEVDGRWRLELQLREE
>CP027749.1|AZE20831.1|409811_410267_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRHADLASCLESLGHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLDALPAEQRLRLPMREGCRSLNLSNTVAVAVYEAWRQLGFK
>CP027749.1|AZE20830.1|409108_409591_+|Protein-export-protein-SecB-(maintains-pre-export-unfolded-state)
MTDQQNTAATEDESAPQFSLQRIYVRDLSFEAPKSPAIFRQQWEPSVGLDLNTRQKALEEGFHEVVLTLSVTVKNGEEVAFIAEVQQAGIFLIKNLDDASMSHTLGAFCPNILFPYAREALDSLVTRGSFPALMLAPVNFDALYAQELQRLQAAGEGTVQ
>CP027749.1|AZE20829.1|408797_409052_+|Glutaredoxin-3-(Grx3)
MAAVVVYSSDYCPYCSRAKYLLENKGVAFEEIKVDGKPQVRAEMAQKAGRTSVPQIWIGSTHVGGCDDLFALERAGKLDALLAA
>CP027749.1|AZE20828.1|408382_408796_+|Rhodanese-related-sulfurtransferase-YibN
MVAHLIQFATEHYLLVGAFVILLALLIAHELSRGGRSLSTRELTALVNSEQGVVIDIRPSKDFAAGHIVGALNIPQDKLAARVGELEKHKAKTIILVDALGQHAGTHARELMKSGFTAAKLSGGVGSWKADNLPLVK
>CP027749.1|AZE20827.1|406701_408231_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MTTTPKPLVLMILDGFGHSESHESNAIYAAKKPVLDRLYASVPNGLISGSGMDVGLPDGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFENPTICAAVDKAVAADKAVHILGLLSDGGVHSHQDHLVAMAELAFKRGAEKIYLHAFLDGRDTPPKSAASSIELLDETFKTLGKGRIASLIGRYFAMDRDNRWDRVAQAYNLIVDGNGEFNAATAQEGLQAAYERGESDEFVKATTLGEPVKVEDGDAVVFMNFRADRARELSRVFVEDDFKEFARARQPKLAGFVMLTQYAASIPAPSAFAPGSLENVLGDYLAKNGKTQLRIAETEKYAHVTFFFSGGREEPFPGEERILIPSPKVATYDLQPEMSAPEVTDRIVDAIENQRYDVIVVNYANGDMVGHSGVFDAAVKAVECLDLCVGRIVDALEKVGGEALITADHGNVEQMSDAATGQAHTAHTSEPVPFIYVGKRNLKVREGGVLADVAPTMLKLLGLPQPAEMTGTSILV
>CP027749.1|AZE20826.1|405278_406565_-|Murein-hydrolase-activator-EnvC
MLRALITLALICLLQPAFADERAQTQQQLDATRQDIAELKKLLGKLQEEKSGVQKDLRGTETEMGKLEKQVDALQKELKKSESELQRLDEEKKKLQSARIEQQRLIAIQARAAYQNGRQEYLKLLLNQQNPEKFARTLTYYDYLSQARLEQLKNFNETLRQLANVEKEISLQQAQLLVQKSSLDTQREELDKVRKERQVALAKLNDDVKARGDKLKAREQDQADLGKVLKTIEETLARQAREAEQARQKALIAQQEAEKKRLREAQASADDSPRKPPRAAPGPLVSSAGASYGGPFASSRGKLPWPVDGRLLARFGESRGDDARTKWDGVMISASAGSQVHAVHGGRVVFADWLRGAGLLVILDHGNGYLSLYGHNQTLLKEAGDVVKAGESISTVGSSGGQGAPALYFAIRQQGRPSDPAQWCRAQG
>CP027749.1|AZE20825.1|403936_405247_-|Carboxyl-terminal-protease
MLHLSRLTSLALTIALVIGAPLAFAAETAQSTAATTTKAPLPLEELRTFAEVMDRIKAAYVEPVDDKTLLENAIKGMLSNLDPHSAYLGPEDFAELQESTSGEFGGLGIEVGAEDGIIKVVSPIDDTPASKAGIQAGDLIVKINGQPTRGQSMTEAVDKMRGKIGQKITLTLVRDGGAPFDVTLARATIQVKSVKSQLLESGYGYIRITQFQVKTGEEVSKALAKLRKDNGKKLNGIILDLRNNPGGVLQSAVEVVDHFITKGLIVYTKGRIANSELRFSATGKDESEAVPMVVLINGGSASASEIVAGALQDQKRAVLMGTTSFGKGSVQTVLPLNNDRALKITTALYFTPNGRSIQAQGIVPDIEVRRAKITNEAQDNEYFKEADLQGHLGNGNGGADKPTASGSKPKPMPQDDDYQLAQALSLLKGLSITRSK
>CP027749.1|AZE20824.1|403014_403773_-|Putative-periplasmic-protein-YibQ
MIGLLCLLAFTSTQAAEPAARKAYLSLIIDDLGQNLPRDRRVLALPGPVTTAIMPDTPHAAEFAREAHRAGKIVILHMPMDPATGPFAWHPELPIEELERRLNAAFKAVPYTSGINNHMGSRMTSQPQAMSWLMAELQRRHKFFVDSRTSAKTVAAAEAQKIGLASVSRDVFLDDERTEDAISHQLQTAIDLARKQGSAVVIGHPYPQTLAVLERELPRLKAQGIDWIDIELMISVRSNRAMVGHGKDGVYR
>CP027749.1|AZE20823.1|402186_402942_+|ABC-type-amino-acid-transport/signal-transduction-system,-periplasmic-component/domain
MFKRLLLVLASASVLFAAGARAAQTPDTSLVLLTENFPPYNMARNGKNFAQGENINGIAVDIVREMFKRAGINYSLTLRFPWERIYKLALEQPGYGVFVTARLPDREPLFKWVGPIGPDDWILLARDDSKIALQSLEQARKYRIGAYKGDAIAETLAKQGLKPQVVLKDQDNARKLVGGQIDLWATGDPAGRYLARQEGVTGLKTVLRFHSTQLYLALNKEVPDETVARLQAALDQLREEGVVEEIMGRYL
>CP027749.1|AZE20833.1|411604_413041_-|Nitrogen-regulation-protein-NtrC
MSRSETVWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQQPDVIISDIRMPGASGLDLLARIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVKRANQHAQEQQGLEVIPALARTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALHRHSPRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLDEIGDMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLETLVHAGKFREDLFHRLNVIRIHIPRLSDRREDIPTLAKHFLSRAAQELAVEPKLLKSETEEYLKNLPWPGNVRQLENTCRWITVMASGREVHISDLPPELLSLPQDSAPVTNWEQALRQWADQALARGQSSLLDSAVPSFERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKELGMKVDGGDDDDSDEG
>CP027749.1|AZE20834.1|413037_414123_-|Nitrogen-regulation-protein-NtrB
MTISDQLHRLLLDNLTTATILLNADLRLEYMNPAAEMLLAISGQRSHGQFISELFTESAEALSSLRQAVEQAHPFTKREAMLTALTGQTLTVDYAVTPILSNGDTLLLLEVHPRDRLLRITKEEAQLSKQETSKMLVRGLAHEIKNPLGGIRGAAQLLARELPDENLKDYTNVIIEEADRLRNLVDRMLGSNKLPSLAMCNVHEVLERVSSLVEAESQGCITLVRDYDPSIPDVLIDREQMIQAVLNIVRNAMQAISSQNELRLGRICLRTRTMRQFTIGHVRHRLVTKIEIIDNGPGIPAELQETIFFPMVSGRPDGTGLGLAITQNIISQHQGLIECDSHPGHTTFSIFLPLEQGAPST
>CP027749.1|AZE20835.1|414119_414431_-|hypothetical-protein
MRRKFSARRAAGHSLAQPRTNRTILVHQTAPSSIRSPFWFESTQRSRQNAAKENFKRPFQGSSASFRSLGLVFAFSRYQRLIRARNPGPARDCLVSKEVNIYP
>CP027749.1|AZE20836.1|414481_415894_-|putative-MFS-type-transporter
MNAAQHAAAHKKARKAGIASFIGTTIEWYDFYAYGIAAALVFGKVFFPADLPAGTATLLSFLTLWAGFIARPVGGIIFGHLGDKIGRKTTLVITLIMMGVATTCIGLLPSYLQIGIWAPIALVVLRIIQGIAVGGEWGGAILIASESAPKGKGILYAAFAQQGSPAGNLLATLVFFGLSALPAPDFLLWGWRIPFLLSAALVLVGMVIRLKLEESDDMKRLIQQKKTVKLPILEVLRNHWQIVLLGAGVLPIIHVTYFKSTFALSWATKELGYSQSTFLSVIVIALVVQFITQPLGALLVSRMDMRKAVVLMLLPEFLLMPAMFFAVETGIYWIAVLGMCLATVPHSMFYGAVGGILARAFPTKVRYSGLSISYQLCSLLVGGATPVLAQGILNNTGSIVGVAIASACYALVSLVCMLLLLKRIGHNAADLSTAEQADADELAREPRATPLIEDPATLPPSIDKDAQPAH
>CP027749.1|AZE20837.1|416089_416989_-|Transcriptional-regulator,-LysR-family
MDLKQLRYFVAVAEELHFGRAAARLFISQPALSFDIKKLESQLDVQLLTRNNKSVSLTNAGQVLLDEARYLLLRAEQARRLTLRSAQGFVGRLSIGFVNSILHRGLPQAVRTFEQDHPDTEIVLMEMNSAEQAQALQRGQIDIGFVHWSHFPESIRGEPVLAEPFLCCLPQGHRLAGESRIDLAQLANDDFILFPRNVSPHYHDLIIARCVAAGFSPRIRHETRLWQTVVAMVAYEMGVALVPQTLAGTWKEGVHYCEISGDGALSEIHAIRHADKPSAAAESFLTVLKALQKPVAPGL
>CP027749.1|AZE20838.1|417101_418823_+|Acyl-CoA-dehydrogenase
MTALPEPAQDTLNIPDSRGLNLFDCDAGLAALLKVYLPPQLFAQWLPTLRQLGGRAGGELDVLALSADKNPPQLRPRTRRGEDLQSIYKHPDFIALERAAYAELGLASMSHCPEPVLPLVKYALTFLFVQAEFGLCCPVSMTDSLTRTLRKFGSPELVARYLPSLASRDFDRLFQGAMFMTEQAAGSDVSRTETRARLENGEWRLFGDKWFCSNPDADLAMVLARPEDAPEGMKGVSLFLLPKLRPDGSRNAYRILRLKDKLGSRSMASGEISLDGATAYLIGEVGRGFQQMADMINMSRLSNGVRAAGLMRRGVNEALYVARHRRAFGRHLIEMPLMQRQLLKMMLPAEQARSMFMQIATLLPRADAGDEAARKYVRILTPLIKFRACRDARRVTGDAMEVRGGVGYIEEWSDARLVRDAHLGSIWEGTSNIVALDIARAVTREQALEPLRHYLAGLLAEADLPAASQRLFETVLQRAVAAIEKVAQERRDDQVRLAGSALYHTATAIFMAWEASRQAPDYRRLALAHLLLQHKLLPRDPLRPEPALEPELLALLANESPLSKADAMQLLPA
>CP027749.1|AZE20839.1|418855_420043_+|L-carnitine-dehydratase/bile-acid-inducible-protein-F
MNHAKGALAGLKVIDLSRVLGGPYCSQALADHGAEVIKLEPLSGDETRGWGPPFEGADASYFRGVNRNKQGIAVDLSRPAGITLLMRLLEDADVLIENFKPGTLERWGIGYAEVLSQRFPTLIHCAISGFGGDGPLGGLPGYDAVIQAMAGLMSVNGEAESGPLRIGLPIVDMVTGLNALAGILLALNERHRSGLGQSLDITLYDCGVSLLHPHLANYFAAGKTPLRTGNAHPNIAPYDSYRTGTEPIFLAVGNDRQFAKLCEQLDASALLDDPRFADNGRRSVNREALKQALEARLAEHDGTLLAQRLIRLGVPCGSIASIDKVVEHPHTRHRGLLVEIGDYRGVGSPVKLSRTPASYRSAPPALGANTREVLEGLGLDDQTIESLFEHGIVRE
>CP027749.1|AZE20840.1|420112_420907_+|Enoyl-CoA-hydratase/isomerase-family-protein
MSPESVSPQPQVLLEHPAPGVALLRLNRPQALNALNMALREELAEHFRRLDACPQTRVVVLTGGDTVFAAGADLGELVNASALQLYARHAERHWQAISACRKPVIAAVNGYALGGGCELAMHCDLIVAGHSARFAQPEIKVGVMPGAGGTQRLLRAVGKFQALRLLLTGCQVPADEALRLGLVSEVVADSETLPRALALATSIAGMPPLAVAQIKEVVLAGMDLPLEQALVLERKAFQLLFGSHDQREGMQAFLEKRKPEYQGK
>CP027749.1|AZE20841.1|420903_422430_+|3-hydroxyacyl-CoA-dehydrogenase-PaaC
MTAQPLQRIGLVGTGAMGRGIAQVMAMAGLKVFLFDARPGAAGTAREQLATIFAQQIEKARITPQDAAAAMLNLEVVDSLEALRDCQLVIEAIVENLEAKQQLFRQLEEVLAPSAILASNTSSLSITAIASVCRHPERVAGLHFFNPVPRMRIVEVVDGLATSVGARLQELVRAIGYYPARAKDSPGFIVNHAGRAFGTEALRILSEGVAPAWRIDALLRDSAGFAMGPFELLDLIGLDISVPVMESIYRQFYEEPRYRPHPVLRLMQAGGHLGRKSGQGFYLYDEPGDTRRPPQAVPHCAVLPPVWIVADDEVGRLRLLDLLERLGAKVENGLRPSTSALCLVAPLGDDATEAALRHATDPSRTVAIDTLTTLDSQRCLMLNPATREDMQHAAHALFSADGGTVTLIRDSCGFIVQRTLASIVNLACDIAQQGIASVADIDAAVRLGLGYPLGPLEWGDQLGPERLLQILERLHALTGDPRYRPSGWLRRRALLGLSLRQPENPLPA
>CP027749.1|AZE20842.1|423808_424924_+|Methylphosphotriester-DNA--protein-cysteine-S-methyltransferase
MDNAPLLFQLPDDDTLYRALLERDPAYDGFAFVGVKSTGVFCRLTCAARKPKRENTVFFSSIKACVEAGFRACLRCRPLEQTGVQEPLVKQLLALLEHNADKRWYEGDLIELGFDPSTVRRAFKRHFGVTFLEMARLRRIGEGMQQLAGGASVIDAQISASFDSDSGFRSAFTRLLGQPPSNLRGRELLKADWLQTPIGVMLAVADAQALHLLEFFDRPALATELKRLQEHTGSTIGFGRFAPIDQIESELRRFFAGESASFATPLALNASAFTRTVWQALRAIPPGVTRSYAEVASSIGSASAVRAVARANGANQIAIVIACHRVIGSDGSLTGYGGGLWRKRWLLEHERRLYSQIQARQHLRADEPVAG

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Crispr_ID: CP027749_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027749_2

3190584-3190741

Orphan

Consensus_repeat	Method
GGGCGCCGCGGTTTGTCTGGTGCTGCGCGTTATCGTTCATCGCGGGCAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027749_2

>merge|CP027749|2|3190584-3190741|CRISPRCasFinder
GGGCGCCGCGGTTTGTCTGGTGCTGCGCGTTATCGTTCATCGCGGGCAAGCCTCGCTCCTACACAAGCATGTGCATTCTCTGTAGGCGCGAGGCTTGCCCACGATGGGGGCGCCGCGGTTTGTCTGGTGCTGCGCGTTATCGTTCATCGCGAGCAAGC

>CP027749|2|2|3190584-3190741|CRISPRCasFinder
GGGCGCCGCGGTTTGTCTGGTGCTGCGCGTTATCGTTCATCGCGGGCAAGC	CTCGCTCCTACACAAGCATGTGCATTCTCTGTAGGCGCGAGGCTTGCCCACGATGG
GGGCGCCGCGGTTTGTCTGGTGCTGCGCGTTATCGTTCATCGCGAGCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
CP027749.1\|AZE23366.1\|3196041_3196572_+\|hypothetical-protein	unknown	unknown	unknown
CP027749.1\|AZE23356.1\|3188411_3189437_-\|Hydrolase,-alpha/beta-fold-family	unknown	unknown	gnl\|CDD\|223669
CP027749.1\|AZE23358.1\|3190004_3190472_-\|CopG-protein	unknown	unknown	gnl\|CDD\|225564
CP027749.1\|AZE23365.1\|3195820_3195928_-\|hypothetical-protein	unknown	unknown	unknown
CP027749.1\|AZE23355.1\|3187435_3188389_-\|D-3-phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240646
CP027749.1\|AZE23364.1\|3195588_3195705_-\|hypothetical-protein	unknown	unknown	unknown
CP027749.1\|AZE23353.1\|3183568_3185365_-\|Malto-oligosyltrehalose-trehalohydrolase	unknown	unknown	gnl\|CDD\|274114
CP027749.1\|AZE23367.1\|3196633_3197629_-\|Oxidoreductase,-aldo/keto-reductase-family	unknown	unknown	gnl\|CDD\|381302
CP027749.1\|AZE23363.1\|3195057_3195513_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176854
CP027749.1\|AZE23349.1\|3176074_3178243_-\|Limit-dextrin-alpha-1,6-maltotetraose-hydrolase	unknown	unknown	gnl\|CDD\|131155
CP027749.1\|AZE23359.1\|3190817_3191732_-\|Copper-resistance-protein-CopD	unknown	unknown	gnl\|CDD\|224195
CP027749.1\|AZE23352.1\|3181478_3183572_-\|4-alpha-glucanotransferase-(amylomaltase)	unknown	unknown	gnl\|CDD\|237737
CP027749.1\|AZE23357.1\|3189570_3190008_-\|putative-membrane-protein	unknown	unknown	gnl\|CDD\|224159
CP027749.1\|AZE23354.1\|3185379_3186948_-\|Glycogen-synthase,-ADP-glucose-transglucosylase	unknown	unknown	gnl\|CDD\|234809
CP027749.1\|AZE23360.1\|3191735_3192119_-\|Copper-resistance-protein-CopC	unknown	unknown	gnl\|CDD\|377255
CP027749.1\|AZE23350.1\|3178356_3178674_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378572
CP027749.1\|AZE23368.1\|3197748_3198666_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176161
CP027749.1\|AZE23362.1\|3193102_3194935_-\|Multicopper-oxidase	unknown	unknown	gnl\|CDD\|273649
CP027749.1\|AZE23351.1\|3178695_3181482_-\|Malto-oligosyltrehalose-synthase	unknown	unknown	gnl\|CDD\|237740
CP027749.1\|AZE23361.1\|3192176_3193106_-\|Copper-resistance-protein-B	unknown	unknown	gnl\|CDD\|377498

Protein	Function_ID	Function_description	E-value
CP027749.1\|AZE23356.1\|3188411_3189437_-\|Hydrolase,-alpha/beta-fold-family	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.34852e-27
CP027749.1\|AZE23358.1\|3190004_3190472_-\|CopG-protein	gnl\|CDD\|225564	COG3019, COG3019, Predicted metal-binding protein [General function prediction only].	3.22302e-55
CP027749.1\|AZE23367.1\|3196633_3197629_-\|Oxidoreductase,-aldo/keto-reductase-family	gnl\|CDD\|381302	cd19076, AKR_AKR13A_13D, AKR13A and AKR13D families of aldo-keto reductase (AKR). Schizosaccharomyces pombe aldo-keto reductase YakC is a founding member of aldo-keto reductase family 13 member A1 (AKR13A1). It catalyzes the reversible reduction of ketones to the respective alcohols using NADP(+) as a hydride donor. Rauvolfia serpentina PR is a founding member of aldo-keto reductase family 13 member D1 (AKR13D1). It catalyzes the NADPH-dependent reduction of the aldehyde perakine to yield the alcohol raucaffrinoline in the biosynthetic pathway of ajmaline in Rauvolfia, a key step in indole alkaloid biosynthesis. This family also includes Arabidopsis thaliana aldo-keto reductases, ALKR1-6.	0
CP027749.1\|AZE23355.1\|3187435_3188389_-\|D-3-phosphoglycerate-dehydrogenase	gnl\|CDD\|240646	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	2.59225e-176
CP027749.1\|AZE23353.1\|3183568_3185365_-\|Malto-oligosyltrehalose-trehalohydrolase	gnl\|CDD\|274114	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
CP027749.1\|AZE23363.1\|3195057_3195513_-\|hypothetical-protein	gnl\|CDD\|176854	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	3.72284e-14
CP027749.1\|AZE23349.1\|3176074_3178243_-\|Limit-dextrin-alpha-1,6-maltotetraose-hydrolase	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
CP027749.1\|AZE23359.1\|3190817_3191732_-\|Copper-resistance-protein-CopD	gnl\|CDD\|224195	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism].	7.39954e-32
CP027749.1\|AZE23352.1\|3181478_3183572_-\|4-alpha-glucanotransferase-(amylomaltase)	gnl\|CDD\|237737	PRK14507, PRK14507, malto-oligosyltrehalose synthase.	1.91035e-164
CP027749.1\|AZE23357.1\|3189570_3190008_-\|putative-membrane-protein	gnl\|CDD\|224159	COG1238, COG1238, Predicted membrane protein [Function unknown].	1.86287e-36
CP027749.1\|AZE23354.1\|3185379_3186948_-\|Glycogen-synthase,-ADP-glucose-transglucosylase	gnl\|CDD\|234809	PRK00654, glgA, glycogen synthase GlgA.	0
CP027749.1\|AZE23360.1\|3191735_3192119_-\|Copper-resistance-protein-CopC	gnl\|CDD\|377255	pfam04234, CopC, CopC domain. CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm.	2.84936e-24
CP027749.1\|AZE23350.1\|3178356_3178674_-\|hypothetical-protein	gnl\|CDD\|378572	pfam11154, DUF2934, Protein of unknown function (DUF2934). This bacterial family of proteins has no known function.	3.69048e-11
CP027749.1\|AZE23368.1\|3197748_3198666_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.7193e-97
CP027749.1\|AZE23362.1\|3193102_3194935_-\|Multicopper-oxidase	gnl\|CDD\|273649	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds].	0
CP027749.1\|AZE23351.1\|3178695_3181482_-\|Malto-oligosyltrehalose-synthase	gnl\|CDD\|237740	PRK14511, PRK14511, malto-oligosyltrehalose synthase.	0
CP027749.1\|AZE23361.1\|3192176_3193106_-\|Copper-resistance-protein-B	gnl\|CDD\|377498	pfam05275, CopB, Copper resistance protein B precursor (CopB). This family consists of several bacterial copper resistance proteins. Copper is essential and serves as cofactor for more than 30 enzymes yet a surplus of copper is toxic and leads to radical formation and oxidation of biomolecules. Therefore, copper homeostasis is a key requisite for every organism. CopB serves to extrude copper when it approaches toxic levels.	3.0478e-123

>CP027749.1|AZE23358.1|3190004_3190472_-|CopG-protein
MIKRLPMHNTLRLAALSALLVGSLAQAADLIPIDVHRDANCGCCKKWIEHLQANGFKVNDHVESNMSEVKQRLGVAPRLASCHTAVINGKFVEGHVPADQVLALSKRDDLLGVAAPGMPMGSPGMEMDGMPADAYQVIGLTKDGKDVVVADYPTH
>CP027749.1|AZE23357.1|3189570_3190008_-|putative-membrane-protein
MILTACLGLFLAAFGAATLLPLQSEAVLVGLLLNGQFNLWLLLAVATLGNVLGSLVNWWLGQRLERYKDRRWFPVGPRHLQTARNHYQRYGHWSLLLSWLPIIGDPLTLVAGVMGEPLKRFLLVVTLAKGARYGVLAWMTLGWVG
>CP027749.1|AZE23356.1|3188411_3189437_-|Hydrolase,-alpha/beta-fold-family
MSLSPTRWSLTRWLPALLLTAALPALAAQGPAYGPELQGFDYPYPLQHFAFESQGQALQMGYMDVPAKGTPNGRSVLLMHGKNFCGATWDSSIKALSDAGYRVIAADQIGFCTSSKPEHYQYSFQQLAQNTRQLLDRLGIQQISLLGHSTGGMLATRYALQYPEQVQQLALVNPIGLEDWKALGVPYRSVDQWYARELKLSAEGIRNYERSTYYGGRWKPEFERWVDMLAGLNQGPGHTRVAWNSALIYDMIFTQPVYYEFKDLKMPTLLLIGTADTTAIGSDIAPPAVKARIGNYQVLGKQVAGLIPHSTLIEFPGLGHAPQMEEPAQFHQALLGWLASH
>CP027749.1|AZE23355.1|3187435_3188389_-|D-3-phosphoglycerate-dehydrogenase
MSVQIAVIDDWQDVARDVVDWSLLSGIGQVSFIHDYPSDTVAMSERLAPFEVICVMRERSRFDAALLRSLPRLKLLLTGGMRNAAIDLAAAASLGIQVCGTDSYKHAAPELTWALIMAQTRNLLSEASALRAGLWQQGLGGDLHGKTLGILGLGSIGQRVAQFGQVFGMRVIAWSENLTAERAAAAGVTYVNKQQLFEQADVLSVHLVLSERSRGLVDAQALAWMKPSALLVNTARGPIVDEAALISALERGRLAGAALDVFEQEPLPLDHPLRRLPNVLATPHVGYVSQQNYRQFFTQMIEDIQAWAAGQPIRQLG
>CP027749.1|AZE23354.1|3185379_3186948_-|Glycogen-synthase,-ADP-glucose-transglucosylase
MTSAVLQTQGKHPLPLAGETASTSILAPGGKTSLPLIHHNPNRKKVLFVTSEIADLVKTGGLGDVSAALPRAMAHLHDVRLLIPGYRQVMHSENPIHIIGELGGHAALPACKIGRMDMPDGLVIYVLICPELYEREGTPYGANNGRDWPDNHIRFARLGLAAADIAANLAQIHWCPDLVHAHDWPAGLAPAYMHWRGQRTPTLFTIHNLAYQGVVSLASCPELGIPEHALQQEGMEFYGKLSFLKAGMAYASHITTVSATYAQEITTPAFGCGLDGFLASKTQQGLLSGIPNGIDESWDAATDPHLSTPFAIGDWQGKAANAAHVRRMFGLDPGSGPLFAVVSRLVYQKGLDLTEGVAEYIVKSGGQIAIIGRGEPEEEQAMRALAARFPGRIGVNIGFNETDARRMFAGSDFLLMPSRYEPCGLSQMYAQRFGSLPVARNTGGLADTIENGVTGFLFDESTVASYEEALSRAFKVFAYPQLLNAMRCRAMAAPFNWCKAVEPYAELYEQLVAKALGKSAKP
>CP027749.1|AZE23353.1|3183568_3185365_-|Malto-oligosyltrehalose-trehalohydrolase
MPSRTLETWPHGTVPLDAQRTRFALWAPDAQHVSVELEHGVSLPMLPQANGWFMVVGHCPPGTRYRFNIDNEIRVPDPASRAQDGDVHGPSLVVDPRAYRWQHPHWQGRPWHQAVIYELHVGVLGGYREVEKHLPRLAQLGITAIELMPLAEFPGDRNWGYDGVLPYAPEASYGSPDDLKHLIDCAHGLDLAVMLDVVYNHFGPDGNYLQHYAKAFFREDRHTPWGAAIDFRRQPVRDFFIDNALMWLLEYRFDGLRLDAVHAIDDPDFLSELAQRVRQRIDPARQVWLTVENEYNQASLLEQHFDAQWNDDGHNALHVLLTGETDAYYADFAKRPTEKLARCLSQGFAYQGHVTRHGTARGEPSGHLPPSAFVLFLQNHDQIGNRAFGERLVRLAEPQALRAATVLLLLSPMIPLLFMGDELAAPQPFLFFTSHHGELADAVREGRRGEFAAFSAFADPHKREQIPDPNAPDTFLASRPQADPAQGEQTLALYRQLLQLRREHIVPYLPGAEALGAEVLAEGALCARWRLGNGQELRIDLNLSPHQVEQRPSNAAQRLFDYPAQAFERLQQGHLAPYSALVSLGAAAPLPDLDGERP
>CP027749.1|AZE23352.1|3181478_3183572_-|4-alpha-glucanotransferase-(amylomaltase)
MSDAQLEILASRAGLAVDWIDANGRPQRVEPRVLRSVLASLGHPADNDQQIEASLRQLLQVQQSRQLPPLLTADAGQGLDLGHYFAPDTPCEIRLEDGSVLNLKLDANSMLPGLVPVGYQEVSIAGQHFTLAVAPERCYSVADAVDQATPRAWGLSVQLYSLRRSGDGGYGDTGALEDLVRVAGERGAEAIAISPLHAMFSSDTGRYSPYSPSSRLFLNSLYAAPGTILGERAWRSAIDASGLGPQLQQLEQQPMVDWPVAAQARQKVLRALYEGFCQGEHPLHQDFASFRHASGEALENHCRFEAIQAQRAARGESLDWREWPDAWRTPRSPALAHFAVEHASDIGFYAFCQWLIARCLERVQSTARSSGMGIGLIADLAVGADGGGSQAWSRQDELLAALTVGAPPDILNRQGQGWGISAFSPEGLVRNGFHAFIEMLRANFAHAGGLRIDHVMGLQRLWVIPLGAPPCDGAYLYYPVDDLLRLLTLESHRHQAIVLGEDLGTVPDGLREKLSARAMLGMRVLLFEQEHGTHFRPILDWPDNALATTSTHDLPTLNGWWQGRDIDWSARLGLVDASGETHWREHRQREREGLRHALSRDPQNFREAPHIATHEADQVVDASVRFLGHTRAPLVLLPLEDALGIDEQANLPGTLDSHPNWRRRLAGSSAALLDDPDAARRLELLACARLQAHERDR
>CP027749.1|AZE23351.1|3178695_3181482_-|Malto-oligosyltrehalose-synthase
MNQATTRPVRATLRLQFHRGFSLDDAVPLVPYFARLGISHLYASPLLCARAGSMHGYDVVDPTRVNPELGGEAALERLVRSLRQHDMGLLLDIVSNHMAVGGADNPWWQDLLRWGRLSPYGEFFDIQWHSPDPLMEGQLLLPFLGSDYGVALQEGTLRLCFDAERGEFHVEHYQHHFPICPSDYGELLRVPGELDAESAERLKPLADAFSTLRYQPDAHTQAEPLQRQLQDAASAPQVRAAIEQQLAQYDARQPEGFARLHALLEQQSYRLASWRTAADDINWRRFFDINELGGLRVERPAVFEATHGKIFQLIAAGLVDGLRIDHIDGLADPRGYCRKLRRRVDALRPGQHLPIYVEKILGTGETLRRDWCVDGSTGYEFMNQLSLLQHDPQGAEPLAELWSRHSERPAAFLEEARLARQQLLNGSLASDFESVAQALLQVARNDVMSRDLTLGAIRRALQELIVHFPVYRTYIGACGRSAADEAFFQQALQGARDTLGEADWPVLAYLQQWLGGRGWRQLPPGRQRKVLKHACVRFQQLTSPTAAKAVEDTALYRSAVLLSRNDVGFSTEQFCAPVEAFHAVCRERLATFPDNLLASATHDHKRGEDARARLAVLSELSPWYVAQVEHWRRLAQALRSDPQAPGAGDELILYQALLGSWPLELHSDDSQGLRDYARRLWQWQEKALREAKLHSSWAAANEAYESAVHQFIERLLLSPEGLPLRSAIGAAVQRIAPAGALNGLAQSLLRMTVPGVPDLYQGNEFWDFSLVDPDNRRPVDFATRQQALDPCGETMELLANWRDGRIKQALIAATLERRGEYPQLFRRGTYQPLEVQGRHADKVLAFMREHQGQRAVVIVPRLVAGLLESGAHPRVDAPDWGDTRVHLPFAAPGQNLKGLFSTGAVTPHKDLMISSALRDFPVNLFIQT
>CP027749.1|AZE23350.1|3178356_3178674_-|hypothetical-protein
MSTDDKRIREFAYQIWESEGRPDGQEHRHWEMARKLAEAEALAPSKPPRATRAASAKPGKPAAKPKAVAKPAAAAPLVPPGEKVPPGGKSSTAKKPRAPRKPAAS
>CP027749.1|AZE23349.1|3176074_3178243_-|Limit-dextrin-alpha-1,6-maltotetraose-hydrolase
MTTSKTATTPKTSPATEPSRIREGLPFPLGATWDGLGVNFALFSANATKVELCLFDATGEVELERIELPEYTDEIFHGYLPDAHPGLIYGYRVHGPYDPANGHRFNPNKLLIDPYAKQLVGELKWSEALFGYTIGHPDADLSFDERDSAPFVPKCKVIDPAHTWGHDHRVSVPWDKTIIYETHVRGFTMRHPSVPEAVRGTFAGLMIDDVLEHIRKLGVSSVELLPIHAFVNDQHLLHKGMTNYWGYNSIAFFAPDPRYLASGKIAEFKEMVAHLHEAGLELILDVVYNHTAEGNEQGPTLSMRGIDNASYYRLMPDDKRFYINDSGTGNTLDLSHPCVLQMVTDSLRYWATEMHVDGFRFDLATILGRYHDGFDERHSFLVACRQDPVLRQVKLIAEPWDIGPGGYQVGGFPPGWVEWNDKFRDTVRAFWKGDDGQLADFAARMTASGEMFNQRGRRPYTSVNFVTAHDGFTLHDLVSYNDKHNEANDEDNQDGSNHNLSWNHGVEGPTDDPQINALRLRQMRNFFATLLLAQGTPMLVAGDEFARTQHGNNNAYCQDSEIGWVNWDLDDDGKSLLKFVKRLVKLRMAYPILRRGRFLVGNYNEDIGVKDVTWLAPDASEMTTEQWQDSHGRCLGMLLDGRAQETGIRRPGADATLLLVVNAHHDIVNFCLPEVPDGGFWTCMLDTNQPSVKGQERFEFGHQYSVTGRSLLLFELQHEGED
>CP027749.1|AZE23359.1|3190817_3191732_-|Copper-resistance-protein-CopD
MGELINVALRFALYLDLMLLFGLALFGLYGLRGAQSRRRFRRPLATTLVLGALLSGAALLQLVLSMSGATRLAELDPALVPVLVLETDVGQSWLLRLAALLLAGVLLLFSSGWSRFTLYGLILCTATALASLAWGGHGAMSEGGQRYLHLGSDILHLLGAGAWLGALAAFALLLRRGACEGEQQAGHLLDALKGFASLGTLIVVSLSLSGVLNYLLIVGPDLATLSASTYGLLLSLKVAVFASMLVFAALNRFHLVPQLEQALHRASPQAALPALRRSMLLELAAALLIVGLVAMLGILSPAPE
>CP027749.1|AZE23360.1|3191735_3192119_-|Copper-resistance-protein-CopC
MSYLKHLAIAVTFGAGLTLAGVAQAHPKLLASTPAEGAKGAAPAKIELQFSEPLTTKFSGARLLMTGMPGMSHAPMPVKASVAGGSDPKSMIISPATPLPKGSYKVEWRAVSADTHPITGNLTFEVN
>CP027749.1|AZE23361.1|3192176_3193106_-|Copper-resistance-protein-B
MMPKNALTLFAALLGLSAGPLQAAESMDHSSMDHSSMPASSMPGNPMPGMDHSQMTGMDGKPLQTMEPAAPTQSRTPIPVLTDADRRAAFPPMAGHGVHDKAINSLWLVDRLEYQDADDGSALAWEMNGWIGGDIDRLWLRSEGERTNGRTENAQVEALWGHAIGPWWDVVSGVRQDFKPGAPQTWAALGLQGMALYNFESQATAYLGEGGQSALGLQAEYDILLTNRLILQPNAEVSLYGKNDPQRGIGSGLSSLEAGLRLRYELHRQFAPYVGVTWSRSYGKTADYAREEGEDSSEARLVLGVRLWF
>CP027749.1|AZE23362.1|3193102_3194935_-|Multicopper-oxidase
MHVKPTRRSFIKGLAAGGVLAGTGLWQQPLWARSEDGQLPALSGQQFDLFIGESQVNYSGTSRTAMTINGGLPGPLLRWREGDTVTIRVRNRLKEDTSIHWHGLILPANMDGVPGLSFHGIAPDGLYEYRFKVRQNGTYWYHSHSGLQEQAGVYGPLVIEAREPEPFQYDRDYVVMLSDWSDEAPERLMHILKKQPGYYNFHKRTVGDFIEDVSRDGWAATLADRKMWAQMKMTPTDLADVSGYTYTYLINGQSPGGNWTGLFKPGEKLRLRLINGSAMSYFDLRIPGLKMTVVAADGQYVQPVSVDELRIAVAETYDVLVEPGSQEAYTLFAQAMDRSGYARGTLSQRPGLSATVPPLDPRPLISMADMGMDHGSMAGMDMGAMPGMDHGQMQGMDHSQMQGMDSSNMAGMDHSGMAGMSGMDHGAMGGAMQSHPASEDGNPLVDMQTMSPTPKLADPGIGLRNNGRRVLTYADLRSTFEDPDGREPSRTIELHLTGHMEKFSWSFDGIKFSDAEPLRLTYGERVRITLVNDTMMTHPIHLHGMWSDLEDEQGRFLVRKHTIDMPPGSKRSYRVTADALGRWAYHCHLLFHMEMGMFREVRVDEAGSAA
>CP027749.1|AZE23363.1|3195057_3195513_-|hypothetical-protein
MEQRQQHLLDELIFHELYIDAPIDTVYYYVTQPDRWHEWHPASLRADTGLAGSLPAGHRFSKTIDLLGLQIHMSCRVLVAVFPKEFKIVFSSPPADGSIHYQLCKYGDGTLFKRTLHYCSDLNLVSLRPRIEHLSQLAMVNLKRNLEKIAH
>CP027749.1|AZE23364.1|3195588_3195705_-|hypothetical-protein
MQGSSTTLLRNDPTVHDALPLQREKPCIALLTSYLEIR
>CP027749.1|AZE23365.1|3195820_3195928_-|hypothetical-protein
MPVSIGAPEHLSNKYFGFLQFLYISDTNAWKPRFC
>CP027749.1|AZE23366.1|3196041_3196572_+|hypothetical-protein
MTIGYVGGWTSKAGLLVQDTGTRGKPVSQSVKVKQMLALVGQNPLALNVFKMDEMKLHKQIKGFDPENISAKQLGNMSTFLKQKGLISDVTAMTLLNAGDKFDRFGVQSDPDAKFNALEYFAIQLDNIQTNNLKGNKYASYLIPEYKKAIYVLQNLQSYGKGNGTTVTDKNHSAKA
>CP027749.1|AZE23367.1|3196633_3197629_-|Oxidoreductase,-aldo/keto-reductase-family
MQTRQLGKNGPQVSAIGLGCMGMTDFYTTGTDTREATATLHRALELGINLLDTADMYGPHSNEILIGQAIRGKRDQVFLASKFGIVRDPGDPAARGVNGRPDYIRQAIDGTLQRLGVETLDLYYQHRIDPDVAIEETVGAMAELVQAGKVRYLGLSEASAATLERAHKVHPISALQSEYSLWSRDQEDNGCLAACQRLGIAFVPYSPLGRGFLTGALKSPEDFAADDYRRFSPRFQGENFTKNLLLVEQVKQLAVAKGITTGQLALAWVLAQGDYLIPIPGTKQRKYLEENVAALQVHLSADELLALERIFSPDATAGERYPQAVMALLDR
>CP027749.1|AZE23368.1|3197748_3198666_+|LysR-family-transcriptional-regulator
MDRFNAMRVFTRIVDLGGFAKAADSLQMPRASVTVLIKQLEAHLGVQLLLRTTRQVTPTLDGAAYYQRCVRLLADLEETEAVFSVARHNPRGTLRIDMPAGIGRLVVIPALPAFSERYPLIDLEIGLNDRPVDLIREGVDCVLRGGLCLDDSLVARPLLALEQVTCASPAYLRQRGVPQSLDDLAGHQMIEYFSSVSGKRYGLEFEVQGQVLLPELPKQVSVNSADGYLAACEAGYGLVQTPYYHVAQQLAEGRLIEVLRHIPPPRMPLSALYPPHRHLSTRVRVFVDWLVELFAQLGIHNTRLA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1327352 : 1418183

Pseudomonas_phage(41.18%)

tRNA,tail,plate,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE21646.1\|1327352_1328705_+\|protease	Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage	NA	NA	NA	NA
AZE21647.1\|1328779_1331167_+	Outer membrane protein assembly factor YaeT	NA	NA	NA	NA
AZE21648.1\|1331212_1331716_+	Outer membrane chaperone Skp, precursor	NA	NA	NA	NA
AZE21649.1\|1331719_1332775_+	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	NA	NA	NA
AZE21650.1\|1332883_1333324_+	3-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
AZE21651.1\|1333320_1334097_+	Acyl-ADP--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA
AZE21652.1\|1334099_1335230_+	Lipid-A-disaccharide synthase	NA	NA	NA	NA
AZE21653.1\|1335241_1335874_+	Ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.7e-27	38.9
AZE21654.1\|1335943_1339468_+	DNA polymerase III alpha subunit	A0A2L1IZ23	Streptomyces_phage	1.4e-195	38.0
AZE21655.1\|1339608_1340556_+	Acetyl-coenzyme A carboxyl transferase alpha chain	NA	NA	NA	NA
AZE21656.1\|1340675_1342004_+\|tRNA	tRNA(Ile)-lysidine synthetase	NA	NA	NA	NA
AZE21657.1\|1342049_1342193_+	hypothetical protein	NA	NA	NA	NA
AZE21658.1\|1342385_1343909_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	5.7e-146	53.1
AZE21659.1\|1343914_1344760_+	2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase	E3T537	Cafeteria_roenbergensis_virus	9.4e-50	42.8
AZE21660.1\|1344917_1346207_+	Enolase	A0A1X9I5Z8	Streptococcus_phage	9.0e-137	59.2
AZE21661.1\|1346379_1346658_+	Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	NA	NA	NA	NA
AZE21662.1\|1346654_1347362_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
AZE21663.1\|1347531_1348428_-	Transcriptional regulator, LysR family, in formaldehyde detoxification operon	NA	NA	NA	NA
AZE21664.1\|1348534_1349647_+	S-(hydroxymethyl)glutathione dehydrogenase	E3SJ82	Synechococcus_phage	8.3e-30	27.2
AZE21665.1\|1349735_1350581_+	S-formylglutathione hydrolase	NA	NA	NA	NA
AZE21666.1\|1350632_1351106_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AZE21667.1\|1351102_1352161_+\|tRNA	tRNA pseudouridine(13) synthase	NA	NA	NA	NA
AZE21668.1\|1352148_1352898_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-68	52.6
AZE21669.1\|1352897_1353575_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.8e-43	52.0
AZE21670.1\|1353784_1354618_+	Murein hydrolase activator NlpD	A0A0S2SXL7	Bacillus_phage	6.3e-06	33.3
AZE21671.1\|1354724_1355729_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
AZE21672.1\|1356230_1356554_-	4Fe-4S dicluster domain	NA	NA	NA	NA
AZE21673.1\|1356696_1359276_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	3.1e-27	23.5
AZE21674.1\|1359472_1360198_+	Transcriptional regulator	B5TK58	Pseudomonas_phage	1.3e-124	91.4
AZE21675.1\|1360753_1361182_+	hypothetical protein	NA	NA	NA	NA
AZE21676.1\|1361542_1362124_+	hypothetical protein	NA	NA	NA	NA
AZE21677.1\|1362226_1362574_+	Holin	B5TK61	Pseudomonas_phage	1.0e-50	87.7
AZE21678.1\|1362740_1363505_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	2.0e-06	26.3
AZE21679.1\|1363730_1364255_+	hypothetical protein	NA	NA	NA	NA
AZE21680.1\|1364258_1364867_+\|plate	Baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	1.8e-47	59.1
AZE21681.1\|1364880_1365213_+\|plate	Baseplate assembly protein W	A0A2H4JI46	uncultured_Caudovirales_phage	2.1e-37	69.1
AZE21682.1\|1365209_1366205_+\|plate	Phage-related baseplate assembly protein	A0A2H4JC04	uncultured_Caudovirales_phage	8.9e-108	62.3
AZE21683.1\|1366201_1366936_+\|tail	Phage tail fiber	A0A2H4JDK0	uncultured_Caudovirales_phage	3.4e-40	51.4
AZE21684.1\|1366932_1367463_+\|tail	Phage tail fiber	A2I2X8	Vibrio_virus	3.4e-50	61.9
AZE21685.1\|1368042_1368372_+	hypothetical protein	NA	NA	NA	NA
AZE21686.1\|1368374_1368677_+	Phage protein	Q8H9M8	Vibrio_phage	1.8e-11	64.6
AZE21687.1\|1368763_1368985_+	hypothetical protein	NA	NA	NA	NA
AZE21688.1\|1368987_1370154_+\|tail	Major tail sheath protein	B0ZSG8	Halomonas_phage	1.4e-125	57.5
AZE21689.1\|1370153_1370660_+	hypothetical protein	Q6R4W3	Vibrio_virus	2.6e-23	35.7
AZE21690.1\|1370786_1371398_+	hypothetical protein	B0ZSH0	Halomonas_phage	1.5e-25	36.4
AZE21691.1\|1371394_1371520_+	hypothetical protein	NA	NA	NA	NA
AZE21692.1\|1371526_1373734_+	Phage protein	A0A2H4JAA5	uncultured_Caudovirales_phage	7.2e-09	49.3
AZE21693.1\|1373733_1374117_+\|tail	Unclassified tail protein	A0A2H4JAC8	uncultured_Caudovirales_phage	4.0e-40	59.8
AZE21694.1\|1374109_1374322_+\|tail	P2-like prophage tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	6.9e-18	61.4
AZE21695.1\|1374331_1375348_+\|tail	Phage tail protein D	A0A2H4JH05	uncultured_Caudovirales_phage	1.0e-106	56.6
AZE21696.1\|1375490_1376075_+	hypothetical protein	B5TK65	Pseudomonas_phage	3.1e-76	72.5
AZE21697.1\|1376071_1376254_+	Mu-like prophage FluMu protein GP38	B5TK66	Pseudomonas_phage	6.5e-25	93.3
AZE21698.1\|1376253_1377750_+\|tail	Bacteriophage tail sheath protein	B5TK67	Pseudomonas_phage	2.0e-257	91.0
AZE21699.1\|1377816_1378164_+\|tail	Phage tail tube protein	B5TK68	Pseudomonas_phage	2.9e-58	93.9
AZE21700.1\|1378160_1378457_+\|tail	Phage small tail protein E	B5TK69	Pseudomonas_phage	2.3e-43	94.9
AZE21701.1\|1380648_1381887_+\|tail	Phage tail/DNA circulation protein	B5TK71	Pseudomonas_phage	5.7e-181	75.7
AZE21702.1\|1381890_1382931_+\|tail	Prophage tail protein	B5TK72	Pseudomonas_phage	3.8e-162	82.7
AZE21703.1\|1383047_1383557_+\|plate	Prophage baseplate assembly protein V	B5TK73	Pseudomonas_phage	2.2e-78	88.8
AZE21704.1\|1383556_1383955_+	Bacteriophage protein GP46	B5TK74	Pseudomonas_phage	1.7e-65	89.4
AZE21705.1\|1383944_1384985_+	Phage FluMu protein gp47	B5TK75	Pseudomonas_phage	3.0e-167	87.3
AZE21706.1\|1384972_1385572_+\|tail	Prophage tail protein	B5TK76	Pseudomonas_phage	2.5e-105	91.0
AZE21707.1\|1385583_1386438_+\|tail	Prophage tail fiber protein	B5TK77	Pseudomonas_phage	1.5e-23	76.4
AZE21708.1\|1386442_1387084_+\|tail	putative tail fiber assembly-like protein	B5TK78	Pseudomonas_phage	1.4e-37	51.9
AZE21709.1\|1387215_1388136_+\|tail	Prophage tail fiber protein	B5TK77	Pseudomonas_phage	7.4e-24	61.1
AZE21710.1\|1388135_1388615_+	hypothetical protein	A0A291LAV4	Bordetella_phage	1.3e-11	52.1
AZE21711.1\|1388774_1389677_+\|tail	Prophage tail fiber protein	B5TK81	Pseudomonas_phage	2.4e-35	37.6
AZE21712.1\|1390228_1390969_+\|tail	Prophage tail fiber protein	B5TK77	Pseudomonas_phage	2.1e-21	65.8
AZE21713.1\|1391048_1391402_+	hypothetical protein	Q9ZXK5	Pseudomonas_virus	1.7e-16	39.3
AZE21714.1\|1391447_1392011_+	Lytic enzyme	B5TK83	Pseudomonas_phage	3.7e-87	83.3
AZE21715.1\|1391992_1392529_+	hypothetical protein	B5TK84	Pseudomonas_phage	6.3e-60	71.3
AZE21716.1\|1392611_1393112_+	Nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.0e-72	86.1
AZE21717.1\|1393195_1394248_+	RecA protein	A0A0S2MVG1	Bacillus_phage	4.4e-113	60.9
AZE21718.1\|1394256_1394724_+	Regulatory protein RecX	NA	NA	NA	NA
AZE21719.1\|1394769_1395885_-	Decarboxylase family protein	NA	NA	NA	NA
AZE21720.1\|1396368_1396563_+	hypothetical protein	NA	NA	NA	NA
AZE21721.1\|1396564_1396987_-	Putative NADPH-quinone reductase (modulator of drug activity B)	NA	NA	NA	NA
AZE21722.1\|1397176_1397887_+	putative conserved protein YfiP, contains DTW domain	NA	NA	NA	NA
AZE21723.1\|1398221_1398872_+	Transcriptional regulator, LuxR family	NA	NA	NA	NA
AZE21724.1\|1398948_1399311_+	Diacylglycerol kinase	NA	NA	NA	NA
AZE21725.1\|1399307_1400234_-	LysR family transcriptional regulator	NA	NA	NA	NA
AZE21726.1\|1400367_1401147_+	Ferredoxin--NADP(+) reductase	NA	NA	NA	NA
AZE21727.1\|1401219_1401915_-	S-adenosylmethionine-dependent methyltransferase YaeB	NA	NA	NA	NA
AZE21728.1\|1402001_1402772_-	Rhamnolipid biosynthesis 3-oxoacyl-ACP reductase RhlG	NA	NA	NA	NA
AZE21729.1\|1402905_1403367_-	Uncharacterized protein YehS	Q9EYF4	Enterobacteria_phage	8.5e-37	51.3
AZE21730.1\|1403433_1404144_-	Ribosomal large subunit pseudouridine synthase F	NA	NA	NA	NA
AZE21731.1\|1404226_1404700_-	Acetyltransferase	NA	NA	NA	NA
AZE21732.1\|1404806_1406144_-	Ribosomal protein S12p Asp88 methylthiotransferase	NA	NA	NA	NA
AZE21733.1\|1406244_1406514_-	hypothetical protein	NA	NA	NA	NA
AZE21734.1\|1406535_1408377_+	Kup system potassium uptake protein	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	8.0e-78	35.0
AZE21735.1\|1408575_1408851_-	hypothetical protein	NA	NA	NA	NA
AZE21736.1\|1409348_1410644_-	Alanylphosphatidylglycerol hydrolase, periplasmic	NA	NA	NA	NA
AZE21737.1\|1410643_1413292_-	Alanylphosphatidylglycerol synthase	NA	NA	NA	NA
AZE21738.1\|1414230_1415295_+	DNA polymerase IV	NA	NA	NA	NA
AZE21739.1\|1415496_1416450_-	putative lipoprotein	NA	NA	NA	NA
AZE21740.1\|1416467_1418183_-\|tRNA	Prolyl-tRNA synthetase, bacterial type	NA	NA	NA	NA

DBSCAN-SWA_2

2240811 : 2354854

114

uncultured_Caudovirales_phage(57.14%)

tRNA,plate,integrase,portal,tail,terminase,protease

attL 2243430:2243448|attR 2341793:2341811

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE22469.1\|2240811_2241420_-\|protease	SOS-response repressor and protease LexA	A0A2H4JG58	uncultured_Caudovirales_phage	1.1e-12	55.4
AZE22470.1\|2241672_2242380_+	putative transcriptional regulator for fatty acid degradation FadQ, TetR family	NA	NA	NA	NA
AZE22471.1\|2242572_2243583_+	beta-N-acetylglucosaminidase	NA	NA	NA	NA
2243430:2243448	attL	NA	NA	NA	NA
AZE22472.1\|2243594_2244338_+	S-methyl-5'-thioinosine phosphorylase	NA	NA	NA	NA
AZE22473.1\|2244442_2247136_-	DNA/RNA helicase, SNF2 family	V9XTV7	Choristoneura_murinana_nucleopolyhedrovirus	1.0e-49	29.9
AZE22474.1\|2247147_2247711_-	hypothetical protein	NA	NA	NA	NA
AZE22475.1\|2247721_2251171_-	Transcription-repair coupling factor	NA	NA	NA	NA
AZE22476.1\|2251419_2252985_+	NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
AZE22477.1\|2253132_2254431_-	putative MFS-type transporter	Q6JIH2	Burkholderia_virus	1.4e-68	37.9
AZE22478.1\|2254804_2255782_+	FAD:protein FMN transferase	NA	NA	NA	NA
AZE22479.1\|2255983_2257378_+	Soluble pyridine nucleotide transhydrogenase	NA	NA	NA	NA
AZE22480.1\|2257420_2258143_-	Glycerophosphoryl diester phosphodiesterase	A0A292GJA3	Xanthomonas_phage	7.8e-05	40.4
AZE22481.1\|2258204_2258792_-	hypothetical protein	NA	NA	NA	NA
AZE22482.1\|2258886_2260137_+	Lipoprotein releasing system transmembrane protein LolC	NA	NA	NA	NA
AZE22483.1\|2260129_2260828_+	Lipoprotein-releasing system ATP-binding protein LolD	G9BWD6	Planktothrix_phage	1.3e-36	41.1
AZE22484.1\|2260892_2262137_+	Lipoprotein releasing system transmembrane protein LolE	NA	NA	NA	NA
AZE22485.1\|2262199_2263561_-	Copper sensory histidine kinase CusS	B5LWN8	Feldmannia_species_virus	3.5e-06	22.7
AZE22486.1\|2263560_2264241_-	Copper-sensing two-component system response regulator CusR	NA	NA	NA	NA
AZE22487.1\|2264396_2264951_+	Copper tolerance protein	NA	NA	NA	NA
AZE22488.1\|2265019_2265850_+	NADPH-dependent 7-cyano-7-deazaguanine reductase	A0A2I7SAX1	Vibrio_phage	2.1e-38	37.4
AZE22489.1\|2265898_2266162_-	Chromosome segregation ATPase	NA	NA	NA	NA
AZE22490.1\|2266275_2266896_-	Phosphonoacetaldehyde phosphonohydrolase-related protein	NA	NA	NA	NA
AZE22491.1\|2267098_2267782_+	Outer-membrane-phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
AZE22492.1\|2267842_2268142_-	hypothetical protein	NA	NA	NA	NA
AZE22493.1\|2268419_2269601_+	Serine phosphatase RsbU, regulator of sigma subunit	NA	NA	NA	NA
AZE22494.1\|2269600_2270083_+	Serine-protein kinase RsbW	NA	NA	NA	NA
AZE22495.1\|2270157_2271084_-	Transaldolase	A0A127KNC6	Cyanophage	1.6e-13	33.5
AZE22496.1\|2271273_2272293_-\|tRNA	tRNA-dihydrouridine(20/20a) synthase	NA	NA	NA	NA
AZE22497.1\|2272395_2273493_+\|integrase	Phage integrase family protein	L7TP61	Pseudomonas_virus	4.3e-156	73.8
AZE22498.1\|2274264_2274537_-	hypothetical protein	A0A2K8HN48	Pseudomonas_phage	5.9e-22	60.7
AZE22499.1\|2274533_2276690_-	C-5 cytosine-specific DNA methylase family protein	Q5QF27	Pseudomonas_virus	1.4e-254	60.2
AZE22500.1\|2276686_2277808_-	hypothetical protein	NA	NA	NA	NA
AZE22501.1\|2277804_2277894_-	hypothetical protein	NA	NA	NA	NA
AZE22502.1\|2277890_2278112_-	hypothetical protein	NA	NA	NA	NA
AZE22503.1\|2278108_2278513_-	hypothetical protein	NA	NA	NA	NA
AZE22504.1\|2278561_2278879_-	transcriptional regulator, putative	NA	NA	NA	NA
AZE22505.1\|2279037_2279322_-	DNA-binding protein Roi-related protein	NA	NA	NA	NA
AZE22506.1\|2279332_2279923_-	hypothetical protein	NA	NA	NA	NA
AZE22507.1\|2279919_2280096_-	hypothetical protein	NA	NA	NA	NA
AZE22508.1\|2280263_2281589_+	hypothetical protein	NA	NA	NA	NA
AZE22509.1\|2281653_2282379_-	repressor protein c2	A8CGC0	Salmonella_phage	6.0e-29	37.9
AZE22510.1\|2282457_2282718_+	Regulatory protein Cro of bacteriophage	A0A0D4DBS7	Acinetobacter_phage	7.2e-09	44.7
AZE22511.1\|2283051_2283570_+	hypothetical protein	NA	NA	NA	NA
AZE22512.1\|2283779_2285996_+	DNA primase, phage associated	A0A2D1GN57	Marinobacter_phage	3.2e-190	47.1
AZE22513.1\|2285988_2286351_+	hypothetical protein	NA	NA	NA	NA
AZE22514.1\|2286869_2287214_+	Holin	A0A2H4J893	uncultured_Caudovirales_phage	1.4e-44	82.4
AZE22515.1\|2287359_2287959_+	hypothetical protein	A0A2H4JG15	uncultured_Caudovirales_phage	2.9e-61	67.4
AZE22516.1\|2287963_2289985_+\|terminase	terminase, large subunit, putative	A0A2H4J898	uncultured_Caudovirales_phage	0.0e+00	83.9
AZE22517.1\|2289986_2290193_+	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	2.2e-21	72.1
AZE22518.1\|2290192_2291674_+\|portal	phage portal protein, lambda family	A0A2H4JFL5	uncultured_Caudovirales_phage	5.7e-244	84.4
AZE22519.1\|2291670_2292816_+\|protease	Prophage Clp protease-like protein	A0A2H4JDI2	uncultured_Caudovirales_phage	2.4e-141	70.6
AZE22520.1\|2292812_2293157_+	hypothetical protein	A0A2H4JF15	uncultured_Caudovirales_phage	1.5e-46	86.0
AZE22521.1\|2293320_2294316_+	Phage protein	A0A2H4J890	uncultured_Caudovirales_phage	8.5e-167	87.3
AZE22522.1\|2294318_2294633_+	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	3.7e-28	58.7
AZE22523.1\|2294629_2295292_+	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	4.0e-72	63.3
AZE22524.1\|2295284_2295815_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	2.4e-43	55.2
AZE22525.1\|2295811_2296393_+\|plate	Baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	5.1e-55	65.1
AZE22526.1\|2296436_2296652_+	hypothetical protein	NA	NA	NA	NA
AZE22527.1\|2296654_2296981_+\|plate	Phage baseplate assembly protein	A0A2H4JA09	uncultured_Caudovirales_phage	6.2e-34	65.1
AZE22528.1\|2296977_2297859_+\|plate	Baseplate assembly protein J	A0A2H4JFK9	uncultured_Caudovirales_phage	7.6e-111	69.3
AZE22529.1\|2297860_2298469_+\|tail	Phage tail fiber	A0A2H4JDH5	uncultured_Caudovirales_phage	1.4e-79	72.2
AZE22530.1\|2298461_2299547_+\|tail	Phage tail fiber protein	A0A077K818	Ralstonia_phage	3.1e-69	53.7
AZE22531.1\|2299778_2299925_+	hypothetical protein	NA	NA	NA	NA
AZE22532.1\|2299998_2300298_-	hypothetical protein	NA	NA	NA	NA
AZE22533.1\|2300560_2301727_+\|tail	Phage tail sheath monomer	A0A2H4J869	uncultured_Caudovirales_phage	2.9e-182	81.8
AZE22534.1\|2301739_2302249_+\|tail	Phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	4.3e-66	73.1
AZE22535.1\|2302276_2302573_+	hypothetical protein	A0A2H4J873	uncultured_Caudovirales_phage	2.7e-20	57.4
AZE22536.1\|2302704_2305245_+	Phage protein	A0A2H4JG00	uncultured_Caudovirales_phage	2.8e-81	37.8
AZE22537.1\|2305254_2306100_+	Phage protein U	A0A2H4J875	uncultured_Caudovirales_phage	6.6e-88	58.2
AZE22538.1\|2306074_2306281_+\|tail	Phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	7.1e-20	68.7
AZE22539.1\|2306337_2307390_+\|tail	Phage tail protein D	A0A2H4JBF6	uncultured_Caudovirales_phage	9.3e-148	74.9
AZE22540.1\|2307413_2307965_+	Phage endolysin	A0A2H4JHX4	uncultured_Caudovirales_phage	5.5e-67	68.7
AZE22541.1\|2307964_2308138_+	hypothetical protein	NA	NA	NA	NA
AZE22542.1\|2308234_2308459_+	hypothetical protein	NA	NA	NA	NA
AZE22543.1\|2308508_2308847_-	hypothetical protein	NA	NA	NA	NA
AZE22544.1\|2309346_2309766_+	Type II, N-methyl DNA methyltransferase (group alpha)	Q5ZQW7	Pseudomonas_phage	8.2e-31	73.3
AZE22545.1\|2309883_2310090_+	hypothetical protein	NA	NA	NA	NA
AZE22546.1\|2310089_2311013_+	hypothetical protein	NA	NA	NA	NA
AZE22547.1\|2312683_2313346_+	hypothetical protein	NA	NA	NA	NA
AZE22548.1\|2314071_2314710_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
AZE22549.1\|2314804_2315659_+	Transcriptional regulator	NA	NA	NA	NA
AZE22550.1\|2315711_2316200_-	hypothetical protein	NA	NA	NA	NA
AZE22551.1\|2316457_2318020_+	Two-component transcriptional response regulator, LuxR family	NA	NA	NA	NA
AZE22552.1\|2318023_2318614_-	Acetyltransferase	NA	NA	NA	NA
AZE22553.1\|2318801_2319638_+	N-hydroxyarylamine O-acetyltransferase	NA	NA	NA	NA
AZE22554.1\|2319679_2320072_-	hypothetical protein	NA	NA	NA	NA
AZE22555.1\|2320133_2320553_-	hypothetical protein	NA	NA	NA	NA
AZE22556.1\|2320792_2322331_+	Xanthine/uracil permease family protein	NA	NA	NA	NA
AZE22557.1\|2322386_2323544_-	putative MFS-type transporter	NA	NA	NA	NA
AZE22558.1\|2323586_2323760_+	hypothetical protein	NA	NA	NA	NA
AZE22559.1\|2324452_2324686_+	hypothetical protein	NA	NA	NA	NA
AZE22560.1\|2324692_2324887_-	hypothetical protein	NA	NA	NA	NA
AZE22561.1\|2325021_2326218_-	aromatic-amino-acid aminotransferase	NA	NA	NA	NA
AZE22562.1\|2326553_2328569_+	Excinuclease ABC subunit B	NA	NA	NA	NA
AZE22563.1\|2328680_2328806_-	hypothetical protein	NA	NA	NA	NA
AZE22564.1\|2328809_2330291_+\|tRNA	Glutamyl-tRNA synthetase	NA	NA	NA	NA
AZE22565.1\|2331224_2331764_+	Transcriptional regulator, AcrR family	NA	NA	NA	NA
AZE22566.1\|2331793_2332627_+	Putative hydrolase	NA	NA	NA	NA
AZE22567.1\|2332675_2333113_+	4-hydroxybenzoyl-CoA thioesterase domain protein	NA	NA	NA	NA
AZE22568.1\|2333231_2334191_+\|tRNA	tRNA-dihydrouridine(16) synthase	NA	NA	NA	NA
AZE22569.1\|2334311_2334758_+	Small heat shock protein	A0A1D8KN82	Synechococcus_phage	2.9e-18	37.0
AZE22570.1\|2334943_2335642_+\|tRNA	putative tRNA ligase	NA	NA	NA	NA
AZE22571.1\|2338318_2340010_-	Chaperone protein HscC	M4R062	Micromonas_pusilla_virus	1.1e-78	38.9
AZE22572.1\|2340118_2343397_-	Sensory box/GGDEF family protein	A0A127AWB9	Bacillus_phage	3.8e-14	31.2
2341793:2341811	attR	NA	NA	NA	NA
AZE22573.1\|2343478_2344369_-	Cys regulon transcriptional activator CysB	NA	NA	NA	NA
AZE22574.1\|2344514_2345933_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
AZE22575.1\|2345943_2346588_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
AZE22576.1\|2346594_2346762_-	hypothetical protein	NA	NA	NA	NA
AZE22577.1\|2346816_2347899_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
AZE22578.1\|2347953_2349066_+	Aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
AZE22579.1\|2349250_2350261_+	Aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
AZE22580.1\|2350463_2353061_+	putative type IV pilus assembly FimV-related transmembrane protein	NA	NA	NA	NA
AZE22581.1\|2353139_2353799_-	Iron-sulfur cluster-binding protein	NA	NA	NA	NA
AZE22582.1\|2353999_2354854_+\|tRNA	tRNA pseudouridine(38-40) synthase	NA	NA	NA	NA

DBSCAN-SWA_3

2365310 : 2372204

uncultured_Caudovirales_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE22593.1\|2365310_2366180_-	Integrase	A0A2H4J1K3	uncultured_Caudovirales_phage	2.0e-151	91.3
AZE22594.1\|2366746_2367385_+	hypothetical protein	A0A059VFX9	Pseudomonas_phage	4.0e-61	60.1
AZE22595.1\|2367564_2368662_+	hypothetical protein	W6MVL2	Pseudomonas_phage	2.9e-27	29.5
AZE22596.1\|2368891_2369182_+	Cell wall hydrolase	A0A2D1GNI1	Pseudomonas_phage	1.1e-37	72.3
AZE22597.1\|2369181_2369700_+	hypothetical protein	A0A2H4IZW4	uncultured_Caudovirales_phage	4.2e-53	64.5
AZE22598.1\|2369703_2370411_-	Gifsy-2 prophage protein	A0A2H4J991	uncultured_Caudovirales_phage	8.3e-92	70.0
AZE22599.1\|2370806_2372204_-	Transposase	W5R8L2	Staphylococcus_phage	2.2e-40	32.5

DBSCAN-SWA_4

4413538 : 4419796

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE24422.1\|4413538_4413931_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	6.7e-59	84.6
AZE24423.1\|4413934_4414216_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.8e-18	86.3
AZE24424.1\|4414295_4414595_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.1e-32	69.7
AZE24425.1\|4414591_4414927_+\|tRNA	tRNA 2-thiouridine synthesis protein TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	1.9e-46	82.0
AZE24426.1\|4414923_4415925_+	Anthranilate phosphoribosyltransferase like	A0A2H4JBY5	uncultured_Caudovirales_phage	1.8e-164	84.1
AZE24427.1\|4416014_4417022_+	Glutathione S-transferase, omega	NA	NA	NA	NA
AZE24428.1\|4417120_4418515_-	Precorrin-2 oxidase	NA	NA	NA	NA
AZE24429.1\|4418515_4419796_-\|tRNA	Seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.1e-101	55.1

DBSCAN-SWA_5

4533252 : 4541502

Bacillus_virus(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE24527.1\|4533252_4533525_-	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.4e-18	58.4
AZE24528.1\|4533675_4536072_-\|protease	ATP-dependent protease La Type I	A0A0R6PGP8	Moraxella_phage	2.0e-222	52.1
AZE24529.1\|4536234_4536519_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.1e-16	51.1
AZE24530.1\|4536515_4537517_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.7e-112	62.0
AZE24531.1\|4537623_4538265_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.2e-58	59.1
AZE24532.1\|4538358_4539669_-	Cell division trigger factor	NA	NA	NA	NA
AZE24533.1\|4539798_4541502_-	Retron-type RNA-directed DNA polymerase	A0A0U4J920	Pseudomonas_phage	6.7e-273	80.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027749

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection