CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027752	Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR38 chromosome, complete genome	3 crisprs	DinG,csa3,cas3,PD-DExK,DEDDh,WYL	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027752_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027752_1

439063-439178

Orphan

Consensus_repeat	Method
GGGCTCGTCGCTGTGAGCGTGATGAGCCCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027752_1

>merge|CP027752|1|439063-439178|CRISPRCasFinder
GGGCTCGTCGCTGTGAGCGTGATGAGCCCGGGTGTTAAAGAGGGAATCCCTGGCCTGCCTGTACCAGGGTTCCCGAAACGGGTGGGGCTCGTCGCTGAGAGCGTGATGAGCCCGGG

>CP027752|1|1|439063-439178|CRISPRCasFinder
GGGCTCGTCGCTGTGAGCGTGATGAGCCCGGG	TGTTAAAGAGGGAATCCCTGGCCTGCCTGTACCAGGGTTCCCGAAACGGGTG
GGGCTCGTCGCTGAGAGCGTGATGAGCCCGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP027752.1\|AZE39767.1\|432087_433398_-\|Carboxyl-terminal-protease	unknown	unknown	gnl\|CDD\|223864
CP027752.1\|AZE39781.1\|444824_445367_-\|Periplasmic-chorismate-mutase-I-precursor	unknown	unknown	gnl\|CDD\|236441
CP027752.1\|AZE39772.1\|437259_437742_+\|Protein-export-protein-SecB-(maintains-pre-export-unfolded-state)	unknown	unknown	gnl\|CDD\|180234
CP027752.1\|AZE39765.1\|430337_431093_+\|ABC-type-amino-acid-transport/signal-transduction-system,-periplasmic-component/domain	unknown	unknown	gnl\|CDD\|223904
CP027752.1\|AZE39773.1\|437961_438417_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223297
CP027752.1\|AZE39777.1\|442631_442841_-\|putative-MFS-type-transporter	unknown	unknown	unknown
CP027752.1\|AZE39780.1\|444220_444736_-\|DNA-directed-RNA-polymerase,-beta-subunit	unknown	unknown	gnl\|CDD\|379230
CP027752.1\|AZE39774.1\|438415_438856_+\|hypothetical-protein	unknown	unknown	unknown
CP027752.1\|AZE39771.1\|436948_437203_+\|Glutaredoxin-3-(Grx3)	unknown	unknown	gnl\|CDD\|274017
CP027752.1\|AZE39768.1\|433429_434716_-\|Murein-hydrolase-activator-EnvC	unknown	unknown	gnl\|CDD\|227278
CP027752.1\|AZE39776.1\|441187_442273_-\|Nitrogen-regulation-protein-NtrB	unknown	unknown	gnl\|CDD\|226370
CP027752.1\|AZE39784.1\|449385_450840_+\|tRNA-4-thiouridine-synthase	unknown	unknown	gnl\|CDD\|234932
CP027752.1\|AZE39769.1\|434852_436382_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
CP027752.1\|AZE39782.1\|445453_447487_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225405
CP027752.1\|AZE39775.1\|439754_441191_-\|Nitrogen-regulation-protein-NtrC	unknown	unknown	gnl\|CDD\|273818
CP027752.1\|AZE39766.1\|431165_431924_-\|Putative-periplasmic-protein-YibQ	unknown	unknown	gnl\|CDD\|377404
CP027752.1\|AZE39779.1\|443133_444249_+\|Methylphosphotriester-DNA--protein-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|225080
CP027752.1\|AZE39778.1\|442848_442992_+\|Acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|181242
CP027752.1\|AZE39783.1\|447648_449055_-\|Glutamine-synthetase-type-I	unknown	unknown	gnl\|CDD\|181884
CP027752.1\|AZE39770.1\|436533_436947_+\|Rhodanese-related-sulfurtransferase-YibN	unknown	unknown	gnl\|CDD\|238089

Protein	Function_ID	Function_description	E-value
CP027752.1\|AZE39767.1\|432087_433398_-\|Carboxyl-terminal-protease	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.95839e-143
CP027752.1\|AZE39781.1\|444824_445367_-\|Periplasmic-chorismate-mutase-I-precursor	gnl\|CDD\|236441	PRK09269, PRK09269, chorismate mutase; Provisional.	1.52192e-61
CP027752.1\|AZE39772.1\|437259_437742_+\|Protein-export-protein-SecB-(maintains-pre-export-unfolded-state)	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	4.26189e-83
CP027752.1\|AZE39765.1\|430337_431093_+\|ABC-type-amino-acid-transport/signal-transduction-system,-periplasmic-component/domain	gnl\|CDD\|223904	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms].	1.9669e-23
CP027752.1\|AZE39773.1\|437961_438417_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	1.05147e-88
CP027752.1\|AZE39778.1\|442848_442992_+\|Acetyl-CoA-acetyltransferase	gnl\|CDD\|181242	PRK08131, PRK08131, 3-oxoadipyl-CoA thiolase.	1.90531e-07
CP027752.1\|AZE39780.1\|444220_444736_-\|DNA-directed-RNA-polymerase,-beta-subunit	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	1.57003e-11
CP027752.1\|AZE39771.1\|436948_437203_+\|Glutaredoxin-3-(Grx3)	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	1.27223e-49
CP027752.1\|AZE39768.1\|433429_434716_-\|Murein-hydrolase-activator-EnvC	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	6.03157e-100
CP027752.1\|AZE39776.1\|441187_442273_-\|Nitrogen-regulation-protein-NtrB	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	1.36849e-164
CP027752.1\|AZE39784.1\|449385_450840_+\|tRNA-4-thiouridine-synthase	gnl\|CDD\|234932	PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional.	0
CP027752.1\|AZE39769.1\|434852_436382_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
CP027752.1\|AZE39775.1\|439754_441191_-\|Nitrogen-regulation-protein-NtrC	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
CP027752.1\|AZE39766.1\|431165_431924_-\|Putative-periplasmic-protein-YibQ	gnl\|CDD\|377404	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).	1.37774e-91
CP027752.1\|AZE39779.1\|443133_444249_+\|Methylphosphotriester-DNA--protein-cysteine-S-methyltransferase	gnl\|CDD\|225080	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism].	8.70993e-81
CP027752.1\|AZE39782.1\|445453_447487_-\|hypothetical-protein	gnl\|CDD\|225405	COG2849, COG2849, Uncharacterized protein conserved in bacteria [Function unknown].	1.07325e-10
CP027752.1\|AZE39783.1\|447648_449055_-\|Glutamine-synthetase-type-I	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
CP027752.1\|AZE39770.1\|436533_436947_+\|Rhodanese-related-sulfurtransferase-YibN	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	6.79697e-24

>CP027752.1|AZE39774.1|438415_438856_+|hypothetical-protein
MHGSEEKDRPHSTPEADVRPKLMLRVFGSLAIFGVMVGLMIGRLTTPDPTELQEVQVQPNALVVWFNNEPKVHGEHIDGAVALLFEAEGRAQKGQLKINDKDANWRVRAAEEGLLLNVVAARALHGEWSGSEVDGRWRLELQLREE
>CP027752.1|AZE39773.1|437961_438417_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MFHVILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRHADLASCLESLGHPRLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLDALPAEQRLRLPMREGCRSLNLSNTVAVAVYEAWRQLGFK
>CP027752.1|AZE39772.1|437259_437742_+|Protein-export-protein-SecB-(maintains-pre-export-unfolded-state)
MTDQQNTAATEDESAPQFSLQRIYVRDLSFEAPKSPAIFRQQWEPSVGLDLNTRQKALEEGFHEVVLTLSVTVKNGEEVAFIAEVQQAGIFLIKNLDDASMSHTLGAFCPNILFPYAREALDSLVTRGSFPALMLAPVNFDALYAQELQRLQAAGEGTVQ
>CP027752.1|AZE39771.1|436948_437203_+|Glutaredoxin-3-(Grx3)
MAAVVVYSSDYCPYCSRAKYLLENKGVAFEEIKVDGKPQVRAEMAQKAGRTSVPQIWIGSTHVGGCDDLFALERAGKLDALLAA
>CP027752.1|AZE39770.1|436533_436947_+|Rhodanese-related-sulfurtransferase-YibN
MVAHLIQFATEHYLLVGAFVILLALLIAHELSRGGRSLSTRELTALVNSEQGVVIDIRPSKDFAAGHIVGALNIPQDKLAARVGELEKHKAKTIILVDALGQHAGTHARELMKSGFTAAKLSGGVGSWKADNLPLVK
>CP027752.1|AZE39769.1|434852_436382_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MTTTPKPLVLMILDGFGHSESHESNAIYAAKKPVLDRLYASVPNGLISGSGMDVGLPDGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGKFFENPTICAAVDKAVAADKAVHILGLLSDGGVHSHQDHLVAMAELAFKRGAEKIYLHAFLDGRDTPPKSAASSIELLDETFKTLGKGRIASLIGRYFAMDRDNRWDRVAQAYNLIVDGKGEFNAATAQEGLQAAYERGESDEFVKATTLGEPVKVEDGDAVVFMNFRADRARELSRVFVEDGFKEFERARQPKLAGFVMLTQYAASIPAPSAFAPGSLENVLGDYLAKNGKTQLRIAETEKYAHVTFFFSGGREEPFPGEERILIPSPKVATYDLQPEMSAPEVTDRIVDAIENQRYDVIVVNYANGDMVGHSGVFDAAVKAVECLDLCVGRIVDALEKVGGEALITADHGNVEQMSDAATGQAHTAHTSEPVPFIYVGKRNLKVREGGVLADVAPTMLKLLGLPQPAEMTGTSILV
>CP027752.1|AZE39768.1|433429_434716_-|Murein-hydrolase-activator-EnvC
MLRALITLALICLLQPAFADERAQTQQQLDATRQDIAELKKLLGKLQEEKSGVQKDLRGTETEMGKLEKQVDALQKELKKSESELQRLDEEKKKLQSARIEQQRLIAIQARAAYQNGRQEYLKLLLNQQNPEKFARTLTYYDYLSQARLEQLKNFNETLRQLANVEKEISLQQAQLLVQKSSLDTQREELDKVRKERQVALAKLNDDVKARGDKLKAREQDQADLGKVLKTIEETLARQAREAEQARQKALIAQQEAEKKRLREAQASADDSPRKPPRAAPGPLVSSAGASYGGPFASSRGKLPWPVDGRLLARFGESRGDDARTKWDGVMISASAGSQVHAVHGGRVVFADWLRGAGLLVILDHGNGYLSLYGHNQTLLKEAGDVVKAGESISTVGSSGGQGAPALYFAIRQQGRPSDPAQWCRAQG
>CP027752.1|AZE39767.1|432087_433398_-|Carboxyl-terminal-protease
MLHLSRLTSLALTIALVIGAPLAFAAETAQSTAATTTKAPLPLEELRTFAEVMDRIKAAYVEPVDDKTLLENAIKGMLSNLDPHSAYLGPEDFAELQESTSGEFGGLGIEVGAEDGIIKVVSPIDDTPASKAGIQAGDLIVKINGQPTRGQSMTEAVDKMRGKIGQKITLTLVRDGGAPFDVTLARATIQVKSVKSQLLESGYGYIRITQFQVKTGEEVSKALAKLRKDNGKKLNGIILDLRNNPGGVLQSAVEVVDHFITKGLIVYTKGRIANSELRFSATGKDESEAVPMVVLINGGSASASEIVAGALQDQKRAVLMGTTSFGKGSVQTVLPLNNDRALKITTALYFTPNGRSIQAQGIVPDIEVRRAKITNEAQDNEYFKEADLQGHLGNGNGGADKPTASGSKPKPMPQDDDYQLAQALSLLKGLSITRSK
>CP027752.1|AZE39766.1|431165_431924_-|Putative-periplasmic-protein-YibQ
MIGLLCLLAFTSTQAAEPAARKAYLSLIIDDLGQNLPRDRRVLALPGPVTTAIMPDTPHAAEFAREAHRAGKIVILHMPMDPATGPFAWHPELPIEELERRLNAAFKAVPYTSGINNHMGSRMTSQPQAMAWLMAELQRRHKFFVDSRTSAKTVAAAEAQKIGLASVSRDVFLDDERTEAAIGHQLQTAIDLARKQGSAVMIGHPYPQTLAVLERELPRLKAQGIDWIDIELMISVRSNRAMSGHGKDGVYR
>CP027752.1|AZE39765.1|430337_431093_+|ABC-type-amino-acid-transport/signal-transduction-system,-periplasmic-component/domain
MFKRLLLVLASASVLFAASARAAQTPDTSLVLLTENFPPYNMARNGKNFAQGENINGIAVDIVREMFKRAGINYSLTLRFPWERIYKLALEQPGYGVFVTARLPDREPLFKWVGPIGPDDWILLARDDSKIALQSLEQARKYRIGAYKGDAIAETLAKQGLKPQVVLKDQDNARKLVGGQIDLWATGDPAGRYLARQEGVTGLKTVLRFHSAQLYLALNKEVPDETVARLQAALDQLREEGVVEEIMGRYL
>CP027752.1|AZE39775.1|439754_441191_-|Nitrogen-regulation-protein-NtrC
MSRSETVWIVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQQPDVIISDIRMPGASGLDLLARIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVKRANQHAQEQQGLEVIPALARTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALHRHSPRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLDEIGDMPADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLETLVHAGKFREDLFHRLNVIRIHIPRLSDRREDIPTLAKHFLSRAAQELAVEPKLLKSETEEYLKNLPWPGNVRQLENTCRWITVMASGREVHISDLPPELLSLPQDSAPVTNWEQALRQWADQALARGQSSLLDSAVPSFERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKELGMKVDGGDDDDSDEG
>CP027752.1|AZE39776.1|441187_442273_-|Nitrogen-regulation-protein-NtrB
MTISDQLHRLLLDNLTTATILLNADLRLEYMNPAAEMLLAISGQRSHGQFISELFTESAEALSSLRQAVEQAHPFTKREAMLTALTGQTLTVDYAVTPILSNGDTLLLLEVHPRDRLLRITKEEAQLSKQETSKMLVRGLAHEIKNPLGGIRGAAQLLARELPDENLKDYTNVIIEEADRLRNLVDRMLGSNKLPSLAMCNVHEVLERVSSLVEAESQGCITLVRDYDPSIPDVLIDREQMIQAVLNIVRNAMQAISSQNELRLGRICLRTRTMRQFTIGHVRHRLVTKIEIIDNGPGIPAELQETIFFPMVSGRPDGTGLGLAITQNIISQHQGLIECDSHPGHTTFSIFLPLEQGAPST
>CP027752.1|AZE39777.1|442631_442841_-|putative-MFS-type-transporter
MAIASACYALVSLVCMLLLLKRIGHNAADLSTAEQADADELAREPLATPLIEDPATLPPNIDKDAQPAH
>CP027752.1|AZE39778.1|442848_442992_+|Acetyl-CoA-acetyltransferase
MLNDGAAVWLLGSREIGMEHGVVPMARILSSASVSLCVGVAMVIERA
>CP027752.1|AZE39779.1|443133_444249_+|Methylphosphotriester-DNA--protein-cysteine-S-methyltransferase
MDNAPLLFQLPDDDTLYRALLERDPAYDGFAFVGVKSTGVFCRLTCAARKPKRENTVFFSSIKACVEAGFRACLRCRPLEQTGAQEPLVKQLLALLEHNADKRWYEGDLIELGFDPSTVRRAFKRHFGVTFLEMARLRRIGEGMQQLAGGASVIDAQISASFDSDSGFRSAFTRLLGQPPSNLRGRELLKADWLQTPIGVMLAVADAQALHLLEFFDRPALATELKRLQEHTGSTIGFGRFAPIDQIESELRRFFAGKSASFATPLALNASAFTRTVWQALRAIPPGVTRSYAEVASSIGSASAVRAVARANGANQIAIVIACHRVIGSDGSLTGYGGGLWRKRWLLEHERRLYSQIQARQHLRADEPVAG
>CP027752.1|AZE39780.1|444220_444736_-|DNA-directed-RNA-polymerase,-beta-subunit
MRVHCLYLLLLAALPAAAQIYRYTDAHGNTAYSDQPPAGVPGQAVELAPLNRIEAPRPLTPPGVDPVQTPPSRAPAYTTLELSGVADGGVVRANNGTFEVEVRLQPPLLNEHRLRLLLDDQPYGQPGNLPNLQLVNIDRGEHRLAVQVLDGERVVQQSPQLTFTLQRVHRP
>CP027752.1|AZE39781.1|444824_445367_-|Periplasmic-chorismate-mutase-I-precursor
MTSRFCLALLTLLLAGNACAAPATLSPLLASIEERLAIADQVALSKWDSHKPVEDRPREREVIAGAVAQAPAYKLDGAAVEQFFAAQIEANKLVQYAHLSEWTLQGQAPDAPRPDLVGQIRPQLDRLQKRLLQQLADFSPHRNDPHCPQWLAQATHEGDRAPLRQLALIRATAELCVFKG
>CP027752.1|AZE39782.1|445453_447487_-|hypothetical-protein
MQWTRSLGLIACLAFGSTQAAPFYAGKSLAHPLITGLAESSATLAFIKQAGSVKGYYSVGPDEGQPQLLDDFGDSTIESVFNIALDDESLTRLVLFKQRGQYRLHAYRYDENDRLYRRLEKLQPALERIAKDRKKLDAPTVKQALRQLTPLNYSYFYEDSGIDEFDQLDHSAGTLVGYFDANGQPITANPPGADQYRYKKTFVEKDGRFLTATYWRGEAPAPEGEPLLYNYRASHIAWETEPQRFTGSEDGAYVEYSSFGGAVIAQGAYAHGQRTGEWSFSNPDDGWTHGRFVDGKRQGQWTESYGWQTATGEYRDDLREGRWVLSYDEGGESAVTGFQTYVQGVLDGPSEERVDGSTESGSYRNDKREGPWVTQAGRGNFENGLKSGPWILKTDKGHNQSVNFVADKKDGELRETDANGVLVLIEHYKADVLSGTREGYSPSGNLQYSQQYENGKREGRSLGYSEDGKLISDISWHNDRYEGPHLTFLRDGTPATVGRFEGGRFVGLMKQYDQDEVLYEEANWCRFDKRGSTVERCGKQRRFTHGKLSWETDFLFGSPQGSIEYNYETGQKIREKIIGDNDQITQRTYYDNGQVECQKNSVGFTWMTINQQQVKSHESDGQLTGEQLCYHRNGVVKSRELIDNGLSACRIVYDESGKRLSSSPTDCGAPATAAAGQ
>CP027752.1|AZE39783.1|447648_449055_-|Glutamine-synthetase-type-I
MSKSVQLIKDHDVKWIDLRFTDTKGTQHHVTMPARDALDDDFFEIGKMFDGSSIAGWKGIEASDMILMPVDETAVLDPFTEEPTLILVCDIIEPSTMQGYDRDPRAIAKRAEEYLKSTGIGDTVFVGPEPEFFIFDEVKFKSDISGSMFKIFSEQGSWMSDQDVEGGNKGHRPGVKGGYFPVPPFDHDHEIRTSMCNAMEEMGLVIEVHHHEVATAGQNEIGVKFNTLVNKGDEVQTLKYCVHNVADAYGRTATFMPKPLYGDNGSGMHVHMSISKDGKNTFAGEGYAGLSDTALYFIGGIIKHGKALNGFTNPSTNSYKRLVPGFEAPVMLAYSARNRSASIRIPYVSSPKARRIEARFPDPAANPYLAFAALLMAGLDGIQNKIHPGDAADKNLYDLPPEEAKEIPQVCGSLKEALEELDKGRAFLTKGGVFSDDFIDAYIALKSEEEIKVRTFVHPLEYELYYSC
>CP027752.1|AZE39784.1|449385_450840_+|tRNA-4-thiouridine-synthase
MKLIVKVFPEITIKSRPVRTRFIRQLAKNIRAVLRDLDPAVVVNGVWDNLELETAVSEPKALKEMTERLSCMPGIAHFLQVDEYPLGDFDDIVAKCKQHFGEALAGKVFAVRCKRAGKHEFSSMDVEKYVGSQLRRQCGAAGISLKEPEIEVRMEIRDQRLFVIHSQHNSIGGYPLGALEQTLVLMSGGFDSTVAAYQIMRRGLMSHFCFFNLGGRAHELGVMEVAHYIWKKYGSSQRVLFVSVPFEEVLGEILGKVDNSHMGVILKRMMLRAASSIADRLHIDALVTGEAISQVSSQTLPNLSVIDCVTDKLVLRPLIASHKQDIIDLANEIGTADFAKHMPEYCGVISVNPKTHAKRHRVEHEEKEFDMAVLERAIERAKLVPIDRVIDELGQDLQIEEVSEALAGQIVIDIRHPDAQEDDPLELAGIEIKALPFYALNARFKELDPTRQYLLYCDKGVMSRLHAHHLLSEGHANVRVYRPS

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Crispr_ID: CP027752_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027752_2

3209829-3209986

Orphan

Consensus_repeat	Method
GGGCGCCGCGGTTTGTCTGGTGCTGCGCGTTATCGTTCATCGCGGGCAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027752_2

>merge|CP027752|2|3209829-3209986|CRISPRCasFinder
GGGCGCCGCGGTTTGTCTGGTGCTGCGCGTTATCGTTCATCGCGGGCAAGCCTCGCTCCTACACAAGCATGTGCATTCTCTGTAGGCGCGAGGCTTGCCCACGATGGGGGCGCCGCGGTTTGTCTGGTGCTGCGCGTTATCGTTCATCGCGAGCAAGC

>CP027752|2|2|3209829-3209986|CRISPRCasFinder
GGGCGCCGCGGTTTGTCTGGTGCTGCGCGTTATCGTTCATCGCGGGCAAGC	CTCGCTCCTACACAAGCATGTGCATTCTCTGTAGGCGCGAGGCTTGCCCACGATGG
GGGCGCCGCGGTTTGTCTGGTGCTGCGCGTTATCGTTCATCGCGAGCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
CP027752.1\|AZE42297.1\|3204624_3206193_-\|Glycogen-synthase,-ADP-glucose-transglucosylase	unknown	unknown	gnl\|CDD\|234809
CP027752.1\|AZE42305.1\|3212347_3214180_-\|Multicopper-oxidase	unknown	unknown	gnl\|CDD\|273649
CP027752.1\|AZE42296.1\|3202813_3204610_-\|Malto-oligosyltrehalose-trehalohydrolase	unknown	unknown	gnl\|CDD\|274114
CP027752.1\|AZE42299.1\|3207656_3208682_-\|Hydrolase,-alpha/beta-fold-family	unknown	unknown	gnl\|CDD\|223669
CP027752.1\|AZE42306.1\|3214302_3214758_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176854
CP027752.1\|AZE42292.1\|3195319_3197488_-\|Limit-dextrin-alpha-1,6-maltotetraose-hydrolase	unknown	unknown	gnl\|CDD\|131155
CP027752.1\|AZE42295.1\|3200723_3202817_-\|4-alpha-glucanotransferase-(amylomaltase)	unknown	unknown	gnl\|CDD\|237737
CP027752.1\|AZE42293.1\|3197601_3197919_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378572
CP027752.1\|AZE42298.1\|3206680_3207634_-\|D-3-phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240646
CP027752.1\|AZE42310.1\|3216993_3217911_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176161
CP027752.1\|AZE42308.1\|3215286_3215817_+\|hypothetical-protein	unknown	unknown	unknown
CP027752.1\|AZE42309.1\|3215878_3216874_-\|Oxidoreductase,-aldo/keto-reductase-family	unknown	unknown	gnl\|CDD\|381302
CP027752.1\|AZE42301.1\|3209249_3209717_-\|CopG-protein	unknown	unknown	gnl\|CDD\|225564
CP027752.1\|AZE42304.1\|3211421_3212351_-\|Copper-resistance-protein-B	unknown	unknown	gnl\|CDD\|377498
CP027752.1\|AZE42300.1\|3208815_3209253_-\|putative-membrane-protein	unknown	unknown	gnl\|CDD\|224159
CP027752.1\|AZE42303.1\|3210980_3211364_-\|Copper-resistance-protein-CopC	unknown	unknown	gnl\|CDD\|377255
CP027752.1\|AZE42302.1\|3210062_3210977_-\|Copper-resistance-protein-CopD	unknown	unknown	gnl\|CDD\|224195
CP027752.1\|AZE42294.1\|3197940_3200727_-\|Malto-oligosyltrehalose-synthase	unknown	unknown	gnl\|CDD\|237740
CP027752.1\|AZE42307.1\|3215065_3215173_-\|hypothetical-protein	unknown	unknown	unknown
CP027752.1\|AZE42311.1\|3218003_3218135_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP027752.1\|AZE42297.1\|3204624_3206193_-\|Glycogen-synthase,-ADP-glucose-transglucosylase	gnl\|CDD\|234809	PRK00654, glgA, glycogen synthase GlgA.	0
CP027752.1\|AZE42305.1\|3212347_3214180_-\|Multicopper-oxidase	gnl\|CDD\|273649	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds].	0
CP027752.1\|AZE42296.1\|3202813_3204610_-\|Malto-oligosyltrehalose-trehalohydrolase	gnl\|CDD\|274114	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
CP027752.1\|AZE42299.1\|3207656_3208682_-\|Hydrolase,-alpha/beta-fold-family	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.34852e-27
CP027752.1\|AZE42306.1\|3214302_3214758_-\|hypothetical-protein	gnl\|CDD\|176854	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	3.72284e-14
CP027752.1\|AZE42292.1\|3195319_3197488_-\|Limit-dextrin-alpha-1,6-maltotetraose-hydrolase	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
CP027752.1\|AZE42295.1\|3200723_3202817_-\|4-alpha-glucanotransferase-(amylomaltase)	gnl\|CDD\|237737	PRK14507, PRK14507, malto-oligosyltrehalose synthase.	1.91035e-164
CP027752.1\|AZE42293.1\|3197601_3197919_-\|hypothetical-protein	gnl\|CDD\|378572	pfam11154, DUF2934, Protein of unknown function (DUF2934). This bacterial family of proteins has no known function.	3.69048e-11
CP027752.1\|AZE42298.1\|3206680_3207634_-\|D-3-phosphoglycerate-dehydrogenase	gnl\|CDD\|240646	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	2.59225e-176
CP027752.1\|AZE42310.1\|3216993_3217911_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.7193e-97
CP027752.1\|AZE42309.1\|3215878_3216874_-\|Oxidoreductase,-aldo/keto-reductase-family	gnl\|CDD\|381302	cd19076, AKR_AKR13A_13D, AKR13A and AKR13D families of aldo-keto reductase (AKR). Schizosaccharomyces pombe aldo-keto reductase YakC is a founding member of aldo-keto reductase family 13 member A1 (AKR13A1). It catalyzes the reversible reduction of ketones to the respective alcohols using NADP(+) as a hydride donor. Rauvolfia serpentina PR is a founding member of aldo-keto reductase family 13 member D1 (AKR13D1). It catalyzes the NADPH-dependent reduction of the aldehyde perakine to yield the alcohol raucaffrinoline in the biosynthetic pathway of ajmaline in Rauvolfia, a key step in indole alkaloid biosynthesis. This family also includes Arabidopsis thaliana aldo-keto reductases, ALKR1-6.	0
CP027752.1\|AZE42301.1\|3209249_3209717_-\|CopG-protein	gnl\|CDD\|225564	COG3019, COG3019, Predicted metal-binding protein [General function prediction only].	3.22302e-55
CP027752.1\|AZE42304.1\|3211421_3212351_-\|Copper-resistance-protein-B	gnl\|CDD\|377498	pfam05275, CopB, Copper resistance protein B precursor (CopB). This family consists of several bacterial copper resistance proteins. Copper is essential and serves as cofactor for more than 30 enzymes yet a surplus of copper is toxic and leads to radical formation and oxidation of biomolecules. Therefore, copper homeostasis is a key requisite for every organism. CopB serves to extrude copper when it approaches toxic levels.	3.0478e-123
CP027752.1\|AZE42300.1\|3208815_3209253_-\|putative-membrane-protein	gnl\|CDD\|224159	COG1238, COG1238, Predicted membrane protein [Function unknown].	1.86287e-36
CP027752.1\|AZE42303.1\|3210980_3211364_-\|Copper-resistance-protein-CopC	gnl\|CDD\|377255	pfam04234, CopC, CopC domain. CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm.	2.84936e-24
CP027752.1\|AZE42302.1\|3210062_3210977_-\|Copper-resistance-protein-CopD	gnl\|CDD\|224195	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism].	7.39954e-32
CP027752.1\|AZE42294.1\|3197940_3200727_-\|Malto-oligosyltrehalose-synthase	gnl\|CDD\|237740	PRK14511, PRK14511, malto-oligosyltrehalose synthase.	0

>CP027752.1|AZE42301.1|3209249_3209717_-|CopG-protein
MIKRLPMHNTLRLAALSALLVGSLAQAADLIPIDVHRDANCGCCKKWIEHLQANGFKVNDHVESNMSEVKQRLGVAPRLASCHTAVINGKFVEGHVPADQVLALSKRDDLLGVAAPGMPMGSPGMEMDGMPADAYQVIGLTKDGKDVVVADYPTH
>CP027752.1|AZE42300.1|3208815_3209253_-|putative-membrane-protein
MILTACLGLFLAAFGAATLLPLQSEAVLVGLLLNGQFNLWLLLAVATLGNVLGSLVNWWLGQRLERYKDRRWFPVGPRHLQTARNHYQRYGHWSLLLSWLPIIGDPLTLVAGVMGEPLKRFLLVVTLAKGARYGVLAWMTLGWVG
>CP027752.1|AZE42299.1|3207656_3208682_-|Hydrolase,-alpha/beta-fold-family
MSLSPTRWSLTRWLPALLLTAALPALAAQGPAYGPELQGFDYPYPLQHFAFESQGQALQMGYMDVPAKGTPNGRSVLLMHGKNFCGATWDSSIKALSDAGYRVIAADQIGFCTSSKPEHYQYSFQQLAQNTRQLLDRLGIQQISLLGHSTGGMLATRYALQYPEQVQQLALVNPIGLEDWKALGVPYRSVDQWYARELKLSAEGIRNYERSTYYGGRWKPEFERWVDMLAGLNQGPGHTRVAWNSALIYDMIFTQPVYYEFKDLKMPTLLLIGTADTTAIGSDIAPPAVKARIGNYQVLGKQVAGLIPHSTLIEFPGLGHAPQMEEPAQFHQALLGWLASH
>CP027752.1|AZE42298.1|3206680_3207634_-|D-3-phosphoglycerate-dehydrogenase
MSVQIAVIDDWQDVARDVVDWSLLSGIGQVSFIHDYPSDTVAMSERLAPFEVICVMRERSRFDAALLRSLPRLKLLLTGGMRNAAIDLAAAASLGIQVCGTDSYKHAAPELTWALIMAQTRNLLSEASALRAGLWQQGLGGDLHGKTLGILGLGSIGQRVAQFGQVFGMRVIAWSENLTAERAAAAGVTYVNKQQLFEQADVLSVHLVLSERSRGLVDAQALAWMKPSALLVNTARGPIVDEAALISALERGRLAGAALDVFEQEPLPLDHPLRRLPNVLATPHVGYVSQQNYRQFFTQMIEDIQAWAAGQPIRQLG
>CP027752.1|AZE42297.1|3204624_3206193_-|Glycogen-synthase,-ADP-glucose-transglucosylase
MTSAVLQTQGKHPLPLAGETASTSILAPGGKTSLPLIHHNPNRKKVLFVTSEIADLVKTGGLGDVSAALPRAMAHLHDVRLLIPGYRQVMHSENPIHIIGELGGHAALPACKIGRMDMPDGLVIYVLICPELYEREGTPYGANNGRDWPDNHIRFARLGLAAADIAANLAQIHWCPDLVHAHDWPAGLAPAYMHWRGQRTPTLFTIHNLAYQGVVSLASCPELGIPEHALQQEGMEFYGKLSFLKAGMAYASHITTVSATYAQEITTPAFGCGLDGFLASKTQQGLLSGIPNGIDESWDAATDPHLSTPFAIGDWQGKAANAAHVRRMFGLDPGSGPLFAVVSRLVYQKGLDLTEGVAEYIVKSGGQIAIIGRGEPEEEQAMRALAARFPGRIGVNIGFNETDARRMFAGSDFLLMPSRYEPCGLSQMYAQRFGSLPVARNTGGLADTIENGVTGFLFDESTVASYEEALSRAFKVFAYPQLLNAMRCRAMAAPFNWCKAVEPYAELYEQLVAKALGKSAKP
>CP027752.1|AZE42296.1|3202813_3204610_-|Malto-oligosyltrehalose-trehalohydrolase
MPSRTLETWPHGTVPLDAQRTRFALWAPDAQHVSVELEHGVSLPMLPQANGWFMVVGHCPPGTRYRFNIDNEIRVPDPASRAQDGDVHGPSLVVDPRAYRWQHPHWQGRPWHQAVIYELHVGVLGGYREVEKHLPRLAQLGITAIELMPLAEFPGDRNWGYDGVLPYAPEASYGSPDDLKHLIDCAHGLDLAVMLDVVYNHFGPDGNYLQHYAKAFFREDRHTPWGAAIDFRRQPVRDFFIDNALMWLLEYRFDGLRLDAVHAIDDPDFLSELAQRVRQRIDPARQVWLTVENEYNQASLLEQHFDAQWNDDGHNALHVLLTGETDAYYADFAKRPTEKLARCLSQGFAYQGHVTRHGTARGEPSGHLPPSAFVLFLQNHDQIGNRAFGERLVRLAEPQALRAATVLLLLSPMIPLLFMGDELAAPQPFLFFTSHHGELADAVREGRRGEFAAFSAFADPHKREQIPDPNAPDTFLASRPQADPAQGEQTLALYRQLLQLRREHIVPYLPGAEALGAEVLAEGALCARWRLGNGQELRIDLNLSPHQVEQRPSNAAQRLFDYPAQAFERLQQGHLAPYSALVSLGAAAPLPDLDGERP
>CP027752.1|AZE42295.1|3200723_3202817_-|4-alpha-glucanotransferase-(amylomaltase)
MSDAQLEILASRAGLAVDWIDANGRPQRVEPRVLRSVLASLGHPADNDQQIEASLRQLLQVQQSRQLPPLLTADAGQGLDLGHYFAPDTPCEIRLEDGSVLNLKLDANSMLPGLVPVGYQEVSIAGQHFTLAVAPERCYSVADAVDQATPRAWGLSVQLYSLRRSGDGGYGDTGALEDLVRVAGERGAEAIAISPLHAMFSSDTGRYSPYSPSSRLFLNSLYAAPGTILGERAWRSAIDASGLGPQLQQLEQQPMVDWPVAAQARQKVLRALYEGFCQGEHPLHQDFASFRHASGEALENHCRFEAIQAQRAARGESLDWREWPDAWRTPRSPALAHFAVEHASDIGFYAFCQWLIARCLERVQSTARSSGMGIGLIADLAVGADGGGSQAWSRQDELLAALTVGAPPDILNRQGQGWGISAFSPEGLVRNGFHAFIEMLRANFAHAGGLRIDHVMGLQRLWVIPLGAPPCDGAYLYYPVDDLLRLLTLESHRHQAIVLGEDLGTVPDGLREKLSARAMLGMRVLLFEQEHGTHFRPILDWPDNALATTSTHDLPTLNGWWQGRDIDWSARLGLVDASGETHWREHRQREREGLRHALSRDPQNFREAPHIATHEADQVVDASVRFLGHTRAPLVLLPLEDALGIDEQANLPGTLDSHPNWRRRLAGSSAALLDDPDAARRLELLACARLQAHERDR
>CP027752.1|AZE42294.1|3197940_3200727_-|Malto-oligosyltrehalose-synthase
MNQATTRPVRATLRLQFHRGFSLDDAVPLVPYFARLGISHLYASPLLCARAGSMHGYDVVDPTRVNPELGGEAALERLVRSLRQHDMGLLLDIVSNHMAVGGADNPWWQDLLRWGRLSPYGEFFDIQWHSPDPLMEGQLLLPFLGSDYGVALQEGTLRLCFDAERGEFHVEHYQHHFPICPSDYGELLRVPGELDAESAERLKPLADAFSTLRYQPDAHTQAEPLQRQLQDAASAPQVRAAIEQQLAQYDARQPEGFARLHALLEQQSYRLASWRTAADDINWRRFFDINELGGLRVERPAVFEATHGKIFQLIAAGLVDGLRIDHIDGLADPRGYCRKLRRRVDALRPGQHLPIYVEKILGTGETLRRDWCVDGSTGYEFMNQLSLLQHDPQGAEPLAELWSRHSERPAAFLEEARLARQQLLNGSLASDFESVAQALLQVARNDVMSRDLTLGAIRRALQELIVHFPVYRTYIGACGRSAADEAFFQQALQGARDTLGEADWPVLAYLQQWLGGRGWRQLPPGRQRKVLKHACVRFQQLTSPTAAKAVEDTALYRSAVLLSRNDVGFSTEQFCAPVEAFHAVCRERLATFPDNLLASATHDHKRGEDARARLAVLSELSPWYVAQVEHWRRLAQALRSDPQAPGAGDELILYQALLGSWPLELHSDDSQGLRDYARRLWQWQEKALREAKLHSSWAAANEAYESAVHQFIERLLLSPEGLPLRSAIGAAVQRIAPAGALNGLAQSLLRMTVPGVPDLYQGNEFWDFSLVDPDNRRPVDFATRQQALDPCGETMELLANWRDGRIKQALIAATLERRGEYPQLFRRGTYQPLEVQGRHADKVLAFMREHQGQRAVVIVPRLVAGLLESGAHPRVDAPDWGDTRVHLPFAAPGQNLKGLFSTGAVTPHKDLMISSALRDFPVNLFIQT
>CP027752.1|AZE42293.1|3197601_3197919_-|hypothetical-protein
MSTDDKRIREFAYQIWESEGRPDGQEHRHWEMARKLAEAEALAPSKPPRATRAASAKPGKPAAKPKAVAKPAAAAPLVPPGEKVPPGGKSSTAKKPRAPRKPAAS
>CP027752.1|AZE42292.1|3195319_3197488_-|Limit-dextrin-alpha-1,6-maltotetraose-hydrolase
MTTSKTATTPKTSPATEPSRIREGLPFPLGATWDGLGVNFALFSANATKVELCLFDATGEVELERIELPEYTDEIFHGYLPDAHPGLIYGYRVHGPYDPANGHRFNPNKLLIDPYAKQLVGELKWSEALFGYTIGHPDADLSFDERDSAPFVPKCKVIDPAHTWGHDHRVSVPWDKTIIYETHVRGFTMRHPSVPEAVRGTFAGLMIDDVLEHIRKLGVSSVELLPIHAFVNDQHLLHKGMTNYWGYNSIAFFAPDPRYLASGKIAEFKEMVAHLHEAGLELILDVVYNHTAEGNEQGPTLSMRGIDNASYYRLMPDDKRFYINDSGTGNTLDLSHPCVLQMVTDSLRYWATEMHVDGFRFDLATILGRYHDGFDERHSFLVACRQDPVLRQVKLIAEPWDIGPGGYQVGGFPPGWVEWNDKFRDTVRAFWKGDDGQLADFAARMTASGEMFNQRGRRPYTSVNFVTAHDGFTLHDLVSYNDKHNEANDEDNQDGSNHNLSWNHGVEGPTDDPQINALRLRQMRNFFATLLLAQGTPMLVAGDEFARTQHGNNNAYCQDSEIGWVNWDLDDDGKSLLKFVKRLVKLRMAYPILRRGRFLVGNYNEDIGVKDVTWLAPDASEMTTEQWQDSHGRCLGMLLDGRAQETGIRRPGADATLLLVVNAHHDIVNFCLPEVPDGGFWTCMLDTNQPSVKGQERFEFGHQYSVTGRSLLLFELQHEGED
>CP027752.1|AZE42302.1|3210062_3210977_-|Copper-resistance-protein-CopD
MGELINVALRFALYLDLMLLFGLALFGLYGLRGAQSRRRFRRPLATTLVLGALLSGAALLQLVLSMSGATRLAELDPALVPVLVLETDVGQSWLLRLAALLLAGVLLLFSSGWSRFTLYGLILCTATALASLAWGGHGAMSEGGQRYLHLGSDILHLLGAGAWLGALAAFALLLRRGACEGEQQAGHLLDALKGFASLGTLIVVSLSLSGVLNYLLIVGPDLATLSASTYGLLLSLKVAVFASMLVFAALNRFHLVPQLEQALHRASPQAALPALRRSMLLELAAALLIVGLVAMLGILSPAPE
>CP027752.1|AZE42303.1|3210980_3211364_-|Copper-resistance-protein-CopC
MSYLKHLAIAVTFGAGLTLAGVAQAHPKLLASTPAEGAKGAAPAKIELQFSEPLTTKFSGARLLMTGMPGMSHAPMPVKASVAGGSDPKSMIISPATPLPKGSYKVEWRAVSADTHPITGNLTFEVN
>CP027752.1|AZE42304.1|3211421_3212351_-|Copper-resistance-protein-B
MMPKNALTLFAALLGLSAGPLQAAESMDHSSMDHSSMPASSMPGNPMPGMDHSQMTGMDGKPLQTMEPAAPTQSRTPIPVLTDADRRAAFPPMAGHGVHDKAINSLWLVDRLEYQDADDGSALAWEMNGWIGGDIDRLWLRSEGERTNGRTENAQVEALWGHAIGPWWDVVSGVRQDFKPGAPQTWAALGLQGMALYNFESQATAYLGEGGQSALGLQAEYDILLTNRLILQPNAEVSLYGKNDPQRGIGSGLSSLEAGLRLRYELHRQFAPYVGVTWSRSYGKTADYAREEGEDSSEARLVLGVRLWF
>CP027752.1|AZE42305.1|3212347_3214180_-|Multicopper-oxidase
MHVKPTRRSFIKGLAAGGVLAGTGLWQQPLWARSEDGQLPALSGQQFDLFIGESQVNYSGTSRTAMTINGGLPGPLLRWREGDTVTIRVRNRLKEDTSIHWHGLILPANMDGVPGLSFHGIAPDGLYEYRFKVRQNGTYWYHSHSGLQEQAGVYGPLVIEAREPEPFQYDRDYVVMLSDWSDEAPERLMHILKKQPGYYNFHKRTVGDFIEDVSRDGWAATLADRKMWAQMKMTPTDLADVSGYTYTYLINGQSPGGNWTGLFKPGEKLRLRLINGSAMSYFDLRIPGLKMTVVAADGQYVQPVSVDELRIAVAETYDVLVEPGSQEAYTLFAQAMDRSGYARGTLSQRPGLSATVPPLDPRPLISMADMGMDHGSMAGMDMGAMPGMDHGQMQGMDHSQMQGMDSSNMAGMDHSGMAGMSGMDHGAMGGAMQSHPASEDGNPLVDMQTMSPTPKLADPGIGLRNNGRRVLTYADLRSTFEDPDGREPSRTIELHLTGHMEKFSWSFDGIKFSDAEPLRLTYGERVRITLVNDTMMTHPIHLHGMWSDLEDEQGRFLVRKHTIDMPPGSKRSYRVTADALGRWAYHCHLLFHMEMGMFREVRVDEAGSAA
>CP027752.1|AZE42306.1|3214302_3214758_-|hypothetical-protein
MEQRQQHLLDELIFHELYIDAPIDTVYYYVTQPDRWHEWHPASLRADTGLAGSLPAGHRFSKTIDLLGLQIHMSCRVLVAVFPKEFKIVFSSPPADGSIHYQLCKYGDGTLFKRTLHYCSDLNLVSLRPRIEHLSQLAMVNLKRNLEKIAH
>CP027752.1|AZE42307.1|3215065_3215173_-|hypothetical-protein
MPVSIGAPEHLSNKYFGFLQFLYISDTNAWKPRFC
>CP027752.1|AZE42308.1|3215286_3215817_+|hypothetical-protein
MTIGYVGGWTSKAGLLVQDTGTRGKPVSQSVKVKQMLALVGQNPLALNVFKMDEMKLHKQIKGFDPENISAKQLGNMSTFLKQKGLISDVTAMTLLNAGDKFDRFGVQSDPDAKFNALEYFAIQLDNIQTNNLKGNKYASYLIPEYKKAIYVLQNLQSYGKGNGTTVTDKNHSAKA
>CP027752.1|AZE42309.1|3215878_3216874_-|Oxidoreductase,-aldo/keto-reductase-family
MQTRQLGKNGPQVSAIGLGCMGMTDFYTTGTDTREATATLHRALELGINLLDTADMYGPHSNEILIGQAIRGKRDQVFLASKFGIVRDPGDPAARGVNGRPDYIRQAIDGTLQRLGVETLDLYYQHRIDPDVAIEETVGAMAELVQAGKVRYLGLSEASAATLERAHKVHPISALQSEYSLWSRDQEDNGCLAACQRLGIAFVPYSPLGRGFLTGALKSPEDFAADDYRRFSPRFQGENFTKNLLLVEQVKQLAVAKGITTGQLALAWVLAQGDYLIPIPGTKQRKYLEENVAALQVHLSADELLALERIFSPDATAGERYPQAVMALLDR
>CP027752.1|AZE42310.1|3216993_3217911_+|LysR-family-transcriptional-regulator
MDRFNAMRVFTRIVDLGGFAKAADSLQMPRASVTVLIKQLEAHLGVQLLLRTTRQVTPTLDGAAYYQRCVRLLADLEETEAVFSVARHNPRGTLRIDMPAGIGRLVVIPALPAFSERYPLIDLEIGLNDRPVDLIREGVDCVLRGGLCLDDSLVARPLLALEQVTCASPAYLRQRGVPQSLDDLAGHQMIEYFSSVSGKRYGLEFEVQGQVLLPELPKQVSVNSADGYLAACEAGYGLVQTPYYHVAQQLAEGRLIEVLRHIPPPRMPLSALYPPHRHLSTRVRVFVDWLVELFAQLGIHNTRLA
>CP027752.1|AZE42311.1|3218003_3218135_-|hypothetical-protein
MFRRITWLIPLLAMLTLSGCIIFPHDGWHHRHYDGGPGYHYPR

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Crispr_ID: CP027752_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027752_3

5568976-5569127

Orphan

Consensus_repeat	Method
CCAAGGCCACCACGGACCTGTAGGAGCGAGGCTTGCCCGCGATAGCGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027752_3

>merge|CP027752|3|5568976-5569127|CRISPRCasFinder
CCAAGGCCACCACGGACCTGTAGGAGCGAGGCTTGCCCGCGATAGCGGTACCTCAGACACACCGCATAGCCCCAATCGCCGGCAAGCCTGGCTCCTACAGAAGCCAAGGCCACCACGGACTTGTAGGAGCGAGGCTTGCCCGCGATAGCGGT

>CP027752|3|3|5568976-5569127|CRISPRCasFinder
CCAAGGCCACCACGGACCTGTAGGAGCGAGGCTTGCCCGCGATAGCGGT	ACCTCAGACACACCGCATAGCCCCAATCGCCGGCAAGCCTGGCTCCTACAGAAG
CCAAGGCCACCACGGACTTGTAGGAGCGAGGCTTGCCCGCGATAGCGGT

Protein	Signature genes	Signature genes Name	Protein_function
CP027752.1\|AZE44404.1\|5558718_5559117_+\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	unknown	unknown	gnl\|CDD\|185011
CP027752.1\|AZE44410.1\|5564649_5565777_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379214
CP027752.1\|AZE44411.1\|5565773_5567561_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236901
CP027752.1\|AZE44407.1\|5561650_5562370_+\|2-hydroxy-3-keto-5-methylthiopentenyl-1--phosphate-phosphatase	unknown	unknown	gnl\|CDD\|319826
CP027752.1\|AZE44403.1\|5558311_5558686_+\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	unknown	unknown	gnl\|CDD\|235094
CP027752.1\|AZE44405.1\|5559246_5560113_-\|fatty-acid-desaturase,-putative	unknown	unknown	gnl\|CDD\|366126
CP027752.1\|AZE44413.1\|5569187_5570222_-\|Hydrolase,-alpha/beta-fold-family	unknown	unknown	gnl\|CDD\|223669
CP027752.1\|AZE44406.1\|5560637_5561420_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377682
CP027752.1\|AZE44419.1\|5575846_5576119_-\|LSU-ribosomal-protein-L31p	unknown	unknown	gnl\|CDD\|234969
CP027752.1\|AZE44414.1\|5570589_5572902_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-methyltransferase	unknown	unknown	gnl\|CDD\|235367
CP027752.1\|AZE44418.1\|5575176_5575560_-\|Nudix-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|240046
CP027752.1\|AZE44421.1\|5576673_5578293_+\|Ferredoxin-dependent-glutamate-synthase	unknown	unknown	gnl\|CDD\|239202
CP027752.1\|AZE44416.1\|5573961_5574471_-\|Acetyltransferase,-GNAT-family	unknown	unknown	gnl\|CDD\|366181
CP027752.1\|AZE44420.1\|5576391_5576544_+\|transcriptional-regulator,-LuxR-family	unknown	unknown	gnl\|CDD\|225107
CP027752.1\|AZE44415.1\|5573010_5573928_+\|Transcriptional-activator-MetR	unknown	unknown	gnl\|CDD\|176132
CP027752.1\|AZE44412.1\|5567557_5568955_+\|Two-component,-Sigma-54-Specific,-central-transcriptional-regulator-of-acidic-amino-acid-uptake	unknown	unknown	gnl\|CDD\|225114
CP027752.1\|AZE44417.1\|5574510_5575149_-\|Putative-threonine-efflux-protein	unknown	unknown	gnl\|CDD\|224199
CP027752.1\|AZE44422.1\|5578361_5578646_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224278
CP027752.1\|AZE44408.1\|5562362_5563757_+\|Aminotransferase,-class-III	unknown	unknown	gnl\|CDD\|223238
CP027752.1\|AZE44409.1\|5563753_5564635_+\|putative-esterase	unknown	unknown	gnl\|CDD\|224561

Protein	Function_ID	Function_description	E-value
CP027752.1\|AZE44404.1\|5558718_5559117_+\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	gnl\|CDD\|185011	PRK15051, PRK15051, 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional.	9.62894e-08
CP027752.1\|AZE44410.1\|5564649_5565777_+\|hypothetical-protein	gnl\|CDD\|379214	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions.	5.70681e-06
CP027752.1\|AZE44411.1\|5565773_5567561_+\|hypothetical-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	2.08726e-53
CP027752.1\|AZE44407.1\|5561650_5562370_+\|2-hydroxy-3-keto-5-methylthiopentenyl-1--phosphate-phosphatase	gnl\|CDD\|319826	cd07524, HAD_Pase, phosphatase, similar to Bacillus subtilis MtnX; belongs to the haloacid dehalogenase-like superfamily. Bacillus subtilis recycles two toxic byproducts of polyamine metabolism, methylthioadenosine and methylthioribose, into methionine by a salvage pathway. The sixth reaction in this pathway is catalyzed by B. subtilis MtnX: the dephosphorylation of 2- hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HKMTP- 1-P) into 1,2-dihydroxy-3-keto-5-methylthiopentene. The hydrolysis of HK-MTP-1-P is a two-step mechanism involving the formation of a transiently phosphorylated aspartyl intermediate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.55453e-32
CP027752.1\|AZE44403.1\|5558311_5558686_+\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	gnl\|CDD\|235094	PRK02971, PRK02971, 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional.	2.47159e-06
CP027752.1\|AZE44405.1\|5559246_5560113_-\|fatty-acid-desaturase,-putative	gnl\|CDD\|366126	pfam00487, FA_desaturase, Fatty acid desaturase.	3.0259e-19
CP027752.1\|AZE44413.1\|5569187_5570222_-\|Hydrolase,-alpha/beta-fold-family	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.89945e-25
CP027752.1\|AZE44406.1\|5560637_5561420_-\|hypothetical-protein	gnl\|CDD\|377682	pfam06629, MipA, MltA-interacting protein MipA. This family consists of several bacterial MltA-interacting protein (MipA) like sequences. As well as interacting with the membrane-bound lytic transglycosylase MltA, MipA is known to bind to PBP1B, a bifunctional murein transglycosylase/transpeptidase. MipA is considered to be a structural protein mediating the assembly of MltA to PBP1B into a complex.	5.02608e-32
CP027752.1\|AZE44419.1\|5575846_5576119_-\|LSU-ribosomal-protein-L31p	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	2.29455e-47
CP027752.1\|AZE44414.1\|5570589_5572902_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-methyltransferase	gnl\|CDD\|235367	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional.	0
CP027752.1\|AZE44418.1\|5575176_5575560_-\|Nudix-hydrolase-family-protein	gnl\|CDD\|240046	cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	5.07897e-45
CP027752.1\|AZE44421.1\|5576673_5578293_+\|Ferredoxin-dependent-glutamate-synthase	gnl\|CDD\|239202	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.	7.98097e-178
CP027752.1\|AZE44416.1\|5573961_5574471_-\|Acetyltransferase,-GNAT-family	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.25779e-15
CP027752.1\|AZE44420.1\|5576391_5576544_+\|transcriptional-regulator,-LuxR-family	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	4.97074e-12
CP027752.1\|AZE44415.1\|5573010_5573928_+\|Transcriptional-activator-MetR	gnl\|CDD\|176132	cd08441, PBP2_MetR, The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold. MetR, a member of the LysR family, is a positive regulator for the metA, metE, metF, and metH genes. The sulfur-containing amino acid methionine is the universal initiator of protein synthesis in all known organisms and its derivative S-adenosylmethionine (SAM) and autoinducer-2 (AI-2) are involved in various cellular processes. SAM plays a central role as methyl donor in methylation reactions, which are essential for the biosynthesis of phospholipids, proteins, DNA and RNA. The interspecies signaling molecule AI-2 is involved in cell-cell communication process (quorum sensing) and gene regulation in bacteria. Although methionine biosynthetic enzymes and metabolic pathways are well conserved in bacteria, the regulation of methionine biosynthesis involves various regulatory mechanisms. In Escherichia coli and Salmonella enterica serovar Typhimurium, MetJ and MetR regulate the expression of methionine biosynthetic genes. The MetJ repressor negatively regulates the E. coli met genes, except for metH. Several of these genes are also under the positive control of MetR with homocysteine as a co-inducer. In Bacillus subtilis, the met genes are controlled by S-box termination-antitermination system. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.93436e-124
CP027752.1\|AZE44412.1\|5567557_5568955_+\|Two-component,-Sigma-54-Specific,-central-transcriptional-regulator-of-acidic-amino-acid-uptake	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
CP027752.1\|AZE44417.1\|5574510_5575149_-\|Putative-threonine-efflux-protein	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	5.54499e-47
CP027752.1\|AZE44422.1\|5578361_5578646_+\|hypothetical-protein	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	1.02503e-26
CP027752.1\|AZE44408.1\|5562362_5563757_+\|Aminotransferase,-class-III	gnl\|CDD\|223238	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism].	3.22268e-107
CP027752.1\|AZE44409.1\|5563753_5564635_+\|putative-esterase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	6.89738e-21

>CP027752.1|AZE44412.1|5567557_5568955_+|Two-component,-Sigma-54-Specific,-central-transcriptional-regulator-of-acidic-amino-acid-uptake
MTHNLLVVDDEPKLCDLLSSALSQDGIQVFTAGNGLHALKVLEQEEIDLVISDWRMPGMDGPQLLAEVKQRYPQIPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKALQFRDILKDNQRMRAELDEHRQIDSLVGDSPTFRRVLQAVDSVRESNATILLTGESGTGKEMVARAIHQHGNRANKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDEVGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFREDLYYRLNVFPIPLPALRERVEDIAPLARHFAHTLGATAGKRITGFSPQALQAMANYAWPGNIRELQNCVERATIVAAGAVIEESDLPGYLFSSPPLNAGASALPGDSLSVPSDLDAALAEVEKAYILAALQQSNGVQAAAAQLIGISERSFWYRLKKLGIQVDKIVR
>CP027752.1|AZE44411.1|5565773_5567561_+|hypothetical-protein
MTRKDLRTPRPFAISRWSLQRKLVLAFWMVSVIPTMIAAELAATTLSQIFDSNVRIWLQESTKIVEDEITETLRDNARIAQLFLRYARPPTDRNAAKHDKLTADIADSMGIDVVALIRKRDHQVVFSTAADDIVGQISLAHNAVLQTLQVGGVATGAVVSTFQTTLDGIDYQLLIATYLDASFLTSVADVHSLDLRLYLAKANDFAEIFATQRFEDHPTQVPEKIENILRDTRQPTEQFTSRYSGLYRPIFNDSGELVGVIFSGLLRHSSLVGLVNQSNLFILIFLLSSAASLAVGWLVSKRLTMPLRGLSKGVQAVIAGDYRQRVPVIGGDELAELSSTFNHMSERLGELQHLEAQLRRRDRLHALGEVAMGLAHEIRNPLGIIKTATQLLHRRADLPEGDKRHLEYVISEVSRINDLITDFLDFAKPSAPIRSTLLARPLVEELIGFCEPELASHKIDAQIDDQAPGATLYADARQLKQACLNLILNAIDAMPAGGRLTLGIAQDAEHTILRVTDTGQGIEPDMLERIFTPFVTTKASGTGLGLAKVFSIMENHDGHIECSSEIDAGATFSLYIPAKGEDDEEDDENEQKAQP
>CP027752.1|AZE44410.1|5564649_5565777_+|hypothetical-protein
MITSQVFSSIQAIDRSAWNDCFPGALENWDYYLAVQDAGIEDFTWRYLAVFEDEKLVAAAPAFITRYRLDTTVSGPAKRLSERLQRWWPGLLQLPLYAIGSPVAEQCHAGTASHIPAVRRQTLLGQLLHLARRDADAQGIGLLAVKDAASQDRQWAASCQAFGLQAMPSLPSALLPVPFGSQDAYLGTLGKSTRKDLRRKLRAPGPRIEWRRNIDDVLPQVMRLYEATLRRSDLQFERLPAPYFTGILQHLGERAACVLYWVDQQLVAFNLVLLDEHRLIDKFFAHDLEISREHNLYLRSWMANVDYCIQHRIALYECGQAGYASKLRLGCSFTGNSLFFQHRNPLLDTLLKGLKYVLRPDRTDPAMAAALSESS
>CP027752.1|AZE44409.1|5563753_5564635_+|putative-esterase
MTAQIDPGAGIDLGQGDAGFILGNGEVAVLLIHGLTGTPTELRRVAVGLAQAGCTVYVPTLAGHCGNNADLQATGWQDWYEGVRRTFVGIRQRHRQVFVGGLSMGAVMSMYLASEHPGQVSGLLMYSTTLKYDGWSINKLAFLTPLLMKIPFGVHICSFEEKPPYGIKNKRLRAVVERQMKAGESSSAGLLTMEGVTVRELHRMNAVVKKRMPSITTPALVLHSIEDDITSRWNADYVERKLGGPVVKVLLDNCYHMITVDLQYRRVVELSADFIERQAGPRPAVYDDQRQFA
>CP027752.1|AZE44408.1|5562362_5563757_+|Aminotransferase,-class-III
MSDIRIATAEDQVLLEKEAKYCSYGDTVHYIEPPRIFSRCEGSYVWDTSDQAYLDLQMWYSAVNFGYANPRLNNALKQQIDTLPQIASQYLHKGKIELSEMIAVDAKKKFGLDGRVHFNVGGSQSIEDSLKVVRNATHGKSLMFAFEGGYHGRTLGASSITSSYRYRRRYGHFGERANFIPFPYHFRGPKGMTKEEYGSHCVQQFARLFETEYNGVWDPKVGQSEYAAFYVEPIQGTGGYVIPPMNFYSELKHVLDQHGILMVVDEIQMGFYRTGKLWSIEHFDVKPDVIVFGKALTNGLNPLGGIWAREELINPKVFPPGSTHSTFASNPLGTAVGLEMFKMTSEIDYGAMVMEKGKYFLAGLQDLQKRYPIIGDVDGLGLALRCEICTTDGFTPDKATLDYMVEEGMKGDIEINGQRLGLILDVGGYYKNVITLAPSLEISYAEIDLGIALLDRLLDRAMKR
>CP027752.1|AZE44407.1|5561650_5562370_+|2-hydroxy-3-keto-5-methylthiopentenyl-1--phosphate-phosphatase
MMHWHIVCDFDGTITRTDVIDNVLQRFADPSWEDIEQQWLDGHIGSRECLSRQLALVKASPAELLACFDSVEIDPDFPDFVDHVIGLGASLEVVSDGIEQGIARILARHYVSLLPILANRLRQVDQNSWRIDFPHASDACRAASGNCKCKSTPKGKRVLVIGDGQSDMCVAASADFVFAKGRLAEYCQRNAIPHATFDSFAELPALLALLPNEAANAGAFALDNTTEHCVPTQELFHHV
>CP027752.1|AZE44406.1|5560637_5561420_-|hypothetical-protein
MFSFTRSALLAVLLSLGAACGAFAEEGGQDGLSGSLGLGIGYQPHDPSGSRHDTVPLPYVDLEWGDVSLDTDDGLTWDAFKGNGFSAGPYINYLPGRNANGSLRGLRDVPNMADVGGYIQYAPDDFWRLFASIGSAVAAGEGQGGLLGKVGGEIGYPLGLGIIGSNNLTAHFADARQTQTFFGISDAEAQATGIGRYSAGGGLQNLTLTQNLQVPLGGNWSWMTSASWIHLTGSAADSTLVRERGEVNQGQVQTALSYQF
>CP027752.1|AZE44405.1|5559246_5560113_-|fatty-acid-desaturase,-putative
MARPAYRLLAHSLWDIVPILMALAHFSFVLWLVLAFHSLSWWVILPAALLYAVSLSWSINSISHNQIHNAYFSLPWLNRAFDLLLSVTIGFSQTLYRDIHNRHHRGNSDRPGADGTTVDPLSIYLHGRNGQPDNVWAYTFLSFFRDDPKAIYQEMQRKRPADARWVKVEIGVTVLAYVALALYDWHALLVLLPFWYLGQSLSSLNGYYEHLGGNPDLPIAWGVSSYSRLYNLIWMNNGYHAEHHYRPKMHWTRVKAFHREIREQQRAAGVKVIPLAHGLGFLLKHPKP
>CP027752.1|AZE44404.1|5558718_5559117_+|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily
MTAQTHGWLHGRLGTLVLWALLIGFESAGQIATKVGGDQLGQMDFNLQWLAAVAVNPGVLLAIACYIGAFFVWMLILRRSSLSLAFPLSSLVFVVVLLGSWLGLGEQISLLHWVGVLVIIGGIALLAEGEEA
>CP027752.1|AZE44403.1|5558311_5558686_+|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily
MTLTVILLVAFSIVLDVIGQLCFKLGLDRLPELEGGFRLNAFWGQVFNAPLLWCGIGAYVIEFFVWLEALSRAPLSLLFPAAALAYCGVVLAGKLILGENVSRRRWLGTLVITLGVMLVCVAST
>CP027752.1|AZE44413.1|5569187_5570222_-|Hydrolase,-alpha/beta-fold-family
MWARFFSTTVFLAALLLGLPSQAASRCDVNVPTQRVELEQVSLAYQSIGRASDPALLLVMGLGGQLIHWPDEVVVALCQQGFRVIRYDNRDVGLSTWRQAPANANLTFEVLRYKLGLPVAAPYSLTDMADDALGLMNALQVEQFHVLGASMGGMIAQHLAAMAPQRVESLTLIMTSSGAEGLPAPNAALVQLLSRRGAPNREVALEQQADLLAALGSPQVTDDRQALLHQAAEAYDRAFNPEGVKRQIMAILAEPSRVALLNQLRVPTLVVHGTADPLLPVMHGVHLAAHIQGSQLKLIPGLAHRFQEAFKAPLLAAVLPYLQSHREDTSHWAQIDPLPAPNLL
>CP027752.1|AZE44414.1|5570589_5572902_-|5-methyltetrahydropteroyltriglutamate---homocysteine-methyltransferase
MALAHTLGFPRIGADRELKKALEAYWKGDLDWQALQDVGRQLRARHWQLQKDAGIDLLPVGDFAWYDQVLTHSLAFGVVPERFDSSKDAQGRPTLDTLFAMARGASAGCCGGDQAKTQYAQELTKWFDTNYHYLVPEFSADQSFKLSWEQLFDEVDEAHALGHRVKPVIIGPLTYLWLGKAKGNDFDKLELLERLLPVYGEILNRLKAQGVEWVQIDEPILTLDLPQAWKGAFERAYHILQYSPLKKLVATYFSGLQDNLGLAVGLPVDGLHIDAVRAPEQLTQVLDRLPTYKILSVGLVNGRNVWRCELEQALQQLQAAQERFGDNLWVSSSCSLLHSPVDLAREDQLDAELKSWLAFAVQKCGEISVLRDALNDPQAPAVQAALAASRQVQASRAQSPRIHKAEVQARLKAVSAADSQRHSPFAQRIAQQHARLKLPVFPTTTIGSFPQTASIRLARQAFKQGKLSNNDYTDAMRCEIRHAVQVQERLGLDVLVHGEAERNDMVEYFAEQLDGYLFTRFGWVQSYGSRCVKPAVIYGDLSRPQAMTVDWISYAQSLTDKVMKGMLTGPVTMLMWSFPREDVSREVQARQLALALRDEVVDLEKAGIKIVQIDEAAFREGLPLRRADWQPYLDWAVEAFRLTASGVRDDTQIHTHMCYSEFNDVIQAIAAMDADVITIETSRSDMELLEAFEAFDYPNDIGPGVYDIHSPRVPDTAEMVKLMSKAARRIPAERLWVNPDCGLKTRAWPETEAALVNMVAAARQLRNQQA
>CP027752.1|AZE44415.1|5573010_5573928_+|Transcriptional-activator-MetR
MLEIRHLKTLHALREADSLVEAAERLHLTQSALSHQFKELEERMGMPLFVRKTKPVRFTSAGLRLLQLADATLPLLRAAERDISRLAGGTAGRLHMAIECHSCFQWLMPTIDQFRDAWPEVELDLASGFSFAPLPALARGDLDLVVTSDPVELAGITYVPLFTYEAMLAVANQHRLASKPYIVPEDLLSETLITYPVERDRLDIFTRFLEPADIEPAQVRTSELTVMMMQLVASGRGVCGMPHWALHEYSSRGYVKAKRLGEKGLFATLYAAIRADMLDAPYMRDFLLTAKDTSFSTLDGVSAVR
>CP027752.1|AZE44416.1|5573961_5574471_-|Acetyltransferase,-GNAT-family
MSIQHLDASHAAAYRALMLEAYERHPQAFTSSVAERAAMPLSWWESRLSSPLDLLLGAFEGGELVGIVGLAFEVREKARHKATLFGLYVAQPYRHGGLGYRLVQALLQEARQRPGVRLVQLTVTAGNDAALALYQRCGFVQFGLEPLAVRVGVEYFDKLHLWREVVSPL
>CP027752.1|AZE44417.1|5574510_5575149_-|Putative-threonine-efflux-protein
MIPLHDMLIFIAAALLMVLTPGPNMIYLISRSICQGRRAGVTSLVGVVAGFFVHLFAAAIGLTAVFMAVPVAYEVLKWVGALYLMWLAWQALKPGARSPFEAQQLPPDSSRKLILMGFLTSALNPKIAVFYLSVFPQFISPEHGSVFTQSIILGLTQISVSFSVNLLIALFASGIAAWFVHNPLWLATQRYFMGFVLAGLAVRLLLEQRQTA
>CP027752.1|AZE44418.1|5575176_5575560_-|Nudix-hydrolase-family-protein
MIGPDGRTLLVRKRGTQAFMQPGGKIEPSELPAQALARELEEELGLRIDPADARYLGRFCAPAANEPGFVVEAELFRLDLDTDEVRPAAEIEEVRWIDPEAGDELTLAPLTRDLILPFYRASQLASA
>CP027752.1|AZE44419.1|5575846_5576119_-|LSU-ribosomal-protein-L31p
MKANIHPAYRTVLFHDTAADVYFLIGSTVDTDRTQRHSDGNTYPYVALDVSSASHPVYTGQQRKTQSEGRIAGFNKRFASFGSSGKTGNA
>CP027752.1|AZE44420.1|5576391_5576544_+|transcriptional-regulator,-LuxR-family
MLSGCSGKEIARKLQTSAETVKVHKKHIYDKLGIKSRSELFLIFLQAQNA
>CP027752.1|AZE44421.1|5576673_5578293_+|Ferredoxin-dependent-glutamate-synthase
MSLSLLSRYAFFAACVIFTLASLPFLEHDWLWPFTLVTFLLSLLGIFDLLQSPHAVRRNYPILGNIRYLVEGIRPEIRQYLLESDSDALPFSRAQRSLVYSRAKNESADKPFGTLIDVYQSGFEFIGHSMRPAPLSDPSTFRVTVGGPQCKQPYSASVFNISAMSFGSLSANAIRALNQGAKLGNFAHDTGEGSISPYHRENGGDLTWELGSGYFGCRTSDGRFDPERFAQQAQNPQVRMIEIKMSQGAKPGHGGILPKHKVTQEIADTRGIRMGEDCISPSSHSAFSTPIEMMHFIQQLRELSGGKPVGFKFCLGHPWEFMGIAKAMLETGILPDFIVVDGKEGGTGAAPVEFTDHIGAPMREGLLFVHNTLVGLNLRDKIKLGASGKIVSAFDIASVLAIGADWANSARGFMFAIGCIQSQSCHTNKCPTGVATQDNLRQRALVVPDKAQRVFSFHRNTLKALAEMLAAAGLNHPSQLEARHLVRRMSATEIKLFSQLHVFLKPGELLTGAVTGEFYSRMWQLARADSFEPNSEAAA
>CP027752.1|AZE44422.1|5578361_5578646_+|hypothetical-protein
MLKVIAEDFIKPEHLDTVRPWYAELLEKTRQEPDCIAYDLFVDQQDPGHFIFIEQWPDRAALKAHCQTEHFTRLVPQINAFQARECRVLLMDEF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

409767 : 420329

Pseudomonas_phage(83.33%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE39737.1\|409767_410352_-\|tail	Phage tail assembly protein I	A0A2H4JG90	uncultured_Caudovirales_phage	2.5e-57	61.3
AZE39738.1\|410355_410706_-	hypothetical protein	A0A1B0VML3	Pseudomonas_phage	1.3e-34	64.8
AZE39739.1\|410819_411425_-	hypothetical protein	A0A1B0VMK2	Pseudomonas_phage	3.4e-54	54.2
AZE39740.1\|411421_411736_-	hypothetical protein	A0A1B0VML7	Pseudomonas_phage	2.3e-38	76.7
AZE39741.1\|411732_411927_-	hypothetical protein	NA	NA	NA	NA
AZE39742.1\|412072_413875_-	DNA primase, phage-associated	A0A1B0VP75	Pseudomonas_phage	0.0e+00	95.7
AZE39743.1\|413861_414743_-	DNA primase, phage-associated	A0A1B0VML8	Pseudomonas_phage	3.7e-142	87.7
AZE39744.1\|414739_414958_-	hypothetical protein	A0A1B0VRK9	Pseudomonas_phage	1.2e-28	84.7
AZE39745.1\|414959_415247_-	hypothetical protein	A0A1B0VMJ4	Pseudomonas_phage	5.6e-39	90.8
AZE39746.1\|415250_415580_-	hypothetical protein	NA	NA	NA	NA
AZE39747.1\|415576_415822_-	hypothetical protein	NA	NA	NA	NA
AZE39748.1\|415818_416130_-	hypothetical protein	NA	NA	NA	NA
AZE39749.1\|416126_416288_-	hypothetical protein	A0A1B0VP73	Pseudomonas_phage	5.6e-12	76.0
AZE39750.1\|416605_417280_-	hypothetical protein	I6S1R0	Salmonella_phage	4.7e-28	54.4
AZE39751.1\|417276_417579_-	hypothetical protein	NA	NA	NA	NA
AZE39752.1\|417580_417832_-	Prophage CP4-57 regulatory	A0A1B0VNF0	Pseudomonas_phage	3.9e-12	56.7
AZE39753.1\|417993_419004_-	hypothetical protein	NA	NA	NA	NA
AZE39754.1\|419126_420329_-	Integrase	A0A1B0VMI6	Pseudomonas_phage	4.8e-217	92.7

DBSCAN-SWA_2

1331448 : 1422286

Pseudomonas_phage(42.31%)

protease,tail,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE40582.1\|1331448_1332801_+\|protease	Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage	NA	NA	NA	NA
AZE40583.1\|1332875_1335263_+	Outer membrane protein assembly factor YaeT	NA	NA	NA	NA
AZE40584.1\|1335308_1335812_+	Outer membrane chaperone Skp, precursor	NA	NA	NA	NA
AZE40585.1\|1335815_1336871_+	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	NA	NA	NA
AZE40586.1\|1336980_1337421_+	3-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
AZE40587.1\|1337417_1338194_+	Acyl-ADP--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA
AZE40588.1\|1338196_1339327_+	Lipid-A-disaccharide synthase	NA	NA	NA	NA
AZE40589.1\|1339338_1339971_+	Ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.7e-27	38.9
AZE40590.1\|1340040_1343565_+	DNA polymerase III alpha subunit	A0A2L1IZ23	Streptomyces_phage	1.4e-195	38.0
AZE40591.1\|1343705_1344653_+	Acetyl-coenzyme A carboxyl transferase alpha chain	NA	NA	NA	NA
AZE40592.1\|1344772_1346101_+\|tRNA	tRNA(Ile)-lysidine synthetase	NA	NA	NA	NA
AZE40593.1\|1346146_1346290_+	hypothetical protein	NA	NA	NA	NA
AZE40594.1\|1346375_1348007_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	6.9e-158	53.5
AZE40595.1\|1348012_1348858_+	2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase	E3T537	Cafeteria_roenbergensis_virus	9.4e-50	42.8
AZE40596.1\|1349015_1350305_+	Enolase	A0A1X9I5Z8	Streptococcus_phage	9.0e-137	59.2
AZE40597.1\|1350477_1350756_+	Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage	NA	NA	NA	NA
AZE40598.1\|1350752_1351460_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
AZE40599.1\|1351629_1352526_-	Transcriptional regulator, LysR family, in formaldehyde detoxification operon	NA	NA	NA	NA
AZE40600.1\|1352632_1353745_+	S-(hydroxymethyl)glutathione dehydrogenase	E3SJ82	Synechococcus_phage	8.3e-30	27.2
AZE40601.1\|1353833_1354679_+	S-formylglutathione hydrolase	NA	NA	NA	NA
AZE40602.1\|1354731_1355205_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AZE40603.1\|1355201_1356260_+\|tRNA	tRNA pseudouridine(13) synthase	NA	NA	NA	NA
AZE40604.1\|1356247_1356997_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-68	52.6
AZE40605.1\|1356996_1357674_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.8e-43	52.0
AZE40606.1\|1357883_1358717_+	Murein hydrolase activator NlpD	A0A0S2SXL7	Bacillus_phage	6.3e-06	33.3
AZE40607.1\|1358823_1359828_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
AZE40608.1\|1360329_1360653_-	4Fe-4S dicluster domain	NA	NA	NA	NA
AZE40609.1\|1360795_1363375_-	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	3.1e-27	23.5
AZE40610.1\|1363571_1364297_+	Transcriptional regulator	B5TK58	Pseudomonas_phage	1.3e-124	91.4
AZE40611.1\|1365134_1365281_+	hypothetical protein	NA	NA	NA	NA
AZE40612.1\|1365641_1366223_+	hypothetical protein	NA	NA	NA	NA
AZE40613.1\|1366325_1366673_+	Holin	B5TK61	Pseudomonas_phage	1.0e-50	87.7
AZE40614.1\|1366839_1367604_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	2.0e-06	26.3
AZE40615.1\|1367830_1368355_+	hypothetical protein	NA	NA	NA	NA
AZE40616.1\|1368358_1368967_+\|plate	Baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	1.8e-47	59.1
AZE40617.1\|1368980_1369313_+\|plate	Baseplate assembly protein W	A0A2H4JI46	uncultured_Caudovirales_phage	2.1e-37	69.1
AZE40618.1\|1369309_1370305_+\|plate	Phage-related baseplate assembly protein	A0A2H4JC04	uncultured_Caudovirales_phage	8.9e-108	62.3
AZE40619.1\|1370301_1371036_+\|tail	Phage tail fiber	A0A2H4JDK0	uncultured_Caudovirales_phage	3.4e-40	51.4
AZE40620.1\|1371032_1371563_+\|tail	Phage tail fiber	A2I2X8	Vibrio_virus	3.4e-50	61.9
AZE40621.1\|1372142_1372472_+	hypothetical protein	NA	NA	NA	NA
AZE40622.1\|1372474_1372777_+	Phage protein	Q8H9M8	Vibrio_phage	1.8e-11	64.6
AZE40623.1\|1372863_1373085_+	hypothetical protein	NA	NA	NA	NA
AZE40624.1\|1373087_1374254_+\|tail	Major tail sheath protein	B0ZSG8	Halomonas_phage	1.4e-125	57.5
AZE40625.1\|1374253_1374760_+	hypothetical protein	Q6R4W3	Vibrio_virus	2.6e-23	35.7
AZE40626.1\|1374886_1375498_+	hypothetical protein	B0ZSH0	Halomonas_phage	1.5e-25	36.4
AZE40627.1\|1375494_1375620_+	hypothetical protein	NA	NA	NA	NA
AZE40628.1\|1375626_1377834_+	Phage protein	A0A2H4JAA5	uncultured_Caudovirales_phage	7.2e-09	49.3
AZE40629.1\|1377833_1378217_+\|tail	Unclassified tail protein	A0A2H4JAC8	uncultured_Caudovirales_phage	4.0e-40	59.8
AZE40630.1\|1378209_1378422_+\|tail	P2-like prophage tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	6.9e-18	61.4
AZE40631.1\|1378431_1379448_+\|tail	Phage tail protein D	A0A2H4JH05	uncultured_Caudovirales_phage	1.0e-106	56.6
AZE40632.1\|1379590_1380175_+	hypothetical protein	B5TK65	Pseudomonas_phage	3.1e-76	72.5
AZE40633.1\|1380171_1380354_+	Mu-like prophage FluMu protein GP38	B5TK66	Pseudomonas_phage	6.5e-25	93.3
AZE40634.1\|1380353_1381850_+\|tail	Bacteriophage tail sheath protein	B5TK67	Pseudomonas_phage	2.0e-257	91.0
AZE40635.1\|1381916_1382264_+\|tail	Phage tail tube protein	B5TK68	Pseudomonas_phage	2.9e-58	93.9
AZE40636.1\|1382260_1382557_+\|tail	Phage small tail protein E	B5TK69	Pseudomonas_phage	2.3e-43	94.9
AZE40637.1\|1382687_1384763_+\|tail	Phage tail length tape-measure protein	B5TK70	Pseudomonas_phage	1.8e-38	48.2
AZE40638.1\|1384749_1385988_+\|tail	Phage tail/DNA circulation protein	B5TK71	Pseudomonas_phage	5.7e-181	75.7
AZE40639.1\|1385991_1387032_+\|tail	Prophage tail protein	B5TK72	Pseudomonas_phage	3.8e-162	82.7
AZE40640.1\|1387148_1387658_+\|plate	Prophage baseplate assembly protein V	B5TK73	Pseudomonas_phage	2.2e-78	88.8
AZE40641.1\|1387657_1388056_+	Bacteriophage protein GP46	B5TK74	Pseudomonas_phage	1.7e-65	89.4
AZE40642.1\|1388045_1389086_+	Phage FluMu protein gp47	B5TK75	Pseudomonas_phage	3.0e-167	87.3
AZE40643.1\|1389073_1389673_+\|tail	Prophage tail protein	B5TK76	Pseudomonas_phage	2.5e-105	91.0
AZE40644.1\|1389684_1390539_+\|tail	Prophage tail fiber protein	B5TK77	Pseudomonas_phage	1.5e-23	76.4
AZE40645.1\|1390543_1391185_+\|tail	putative tail fiber assembly-like protein	B5TK78	Pseudomonas_phage	1.4e-37	51.9
AZE40646.1\|1391316_1392237_+\|tail	Prophage tail fiber protein	B5TK77	Pseudomonas_phage	7.4e-24	61.1
AZE40647.1\|1392236_1392716_+	hypothetical protein	A0A291LAV4	Bordetella_phage	1.3e-11	52.1
AZE40648.1\|1392875_1393778_+\|tail	Prophage tail fiber protein	B5TK81	Pseudomonas_phage	1.8e-35	37.6
AZE40649.1\|1394329_1395070_+\|tail	Prophage tail fiber protein	B5TK77	Pseudomonas_phage	2.1e-21	65.8
AZE40650.1\|1395072_1395504_+	hypothetical protein	Q9ZXK5	Pseudomonas_virus	2.2e-23	38.4
AZE40651.1\|1395549_1396113_+	Lytic enzyme	B5TK83	Pseudomonas_phage	3.7e-87	83.3
AZE40652.1\|1396094_1396631_+	hypothetical protein	B5TK84	Pseudomonas_phage	6.3e-60	71.3
AZE40653.1\|1396713_1397214_+	Nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.0e-72	86.1
AZE40654.1\|1397297_1398350_+	RecA protein	A0A0S2MVG1	Bacillus_phage	4.4e-113	60.9
AZE40655.1\|1398358_1398826_+	Regulatory protein RecX	NA	NA	NA	NA
AZE40656.1\|1398871_1399987_-	Decarboxylase family protein	NA	NA	NA	NA
AZE40657.1\|1400470_1400665_+	hypothetical protein	NA	NA	NA	NA
AZE40658.1\|1400666_1401089_-	Putative NADPH-quinone reductase (modulator of drug activity B)	NA	NA	NA	NA
AZE40659.1\|1401278_1401989_+	putative conserved protein YfiP, contains DTW domain	NA	NA	NA	NA
AZE40660.1\|1402323_1402974_+	Transcriptional regulator, LuxR family	NA	NA	NA	NA
AZE40661.1\|1403050_1403413_+	Diacylglycerol kinase	NA	NA	NA	NA
AZE40662.1\|1403409_1404336_-	LysR family transcriptional regulator	NA	NA	NA	NA
AZE40663.1\|1404469_1405249_+	Ferredoxin--NADP(+) reductase	NA	NA	NA	NA
AZE40664.1\|1405321_1406017_-	S-adenosylmethionine-dependent methyltransferase YaeB	NA	NA	NA	NA
AZE40665.1\|1406103_1406874_-	Rhamnolipid biosynthesis 3-oxoacyl-ACP reductase RhlG	NA	NA	NA	NA
AZE40666.1\|1407007_1407469_-	Uncharacterized protein YehS	Q9EYF4	Enterobacteria_phage	8.5e-37	51.3
AZE40667.1\|1407535_1408246_-	Ribosomal large subunit pseudouridine synthase F	NA	NA	NA	NA
AZE40668.1\|1408328_1408802_-	Acetyltransferase	NA	NA	NA	NA
AZE40669.1\|1408908_1410246_-	Ribosomal protein S12p Asp88 methylthiotransferase	NA	NA	NA	NA
AZE40670.1\|1410346_1410616_-	hypothetical protein	NA	NA	NA	NA
AZE40671.1\|1410637_1412479_+	Kup system potassium uptake protein	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	8.0e-78	35.0
AZE40672.1\|1412678_1412954_-	hypothetical protein	NA	NA	NA	NA
AZE40673.1\|1413451_1414747_-	Alanylphosphatidylglycerol hydrolase, periplasmic	NA	NA	NA	NA
AZE40674.1\|1414746_1417395_-	Alanylphosphatidylglycerol synthase	NA	NA	NA	NA
AZE40675.1\|1418333_1419398_+	DNA polymerase IV	NA	NA	NA	NA
AZE40676.1\|1419599_1420553_-	putative lipoprotein	NA	NA	NA	NA
AZE40677.1\|1420570_1422286_-\|tRNA	Prolyl-tRNA synthetase, bacterial type	NA	NA	NA	NA

DBSCAN-SWA_3

2374081 : 2380978

uncultured_Caudovirales_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE41527.1\|2374081_2374951_-	Integrase	A0A2H4J1K3	uncultured_Caudovirales_phage	2.0e-151	91.3
AZE41528.1\|2375518_2376157_+	hypothetical protein	A0A059VFX9	Pseudomonas_phage	4.0e-61	60.1
AZE41529.1\|2376336_2377434_+	hypothetical protein	W6MVL2	Pseudomonas_phage	2.9e-27	29.5
AZE41530.1\|2377617_2377956_+	Cell wall hydrolase	A0A2D1GNI1	Pseudomonas_phage	1.9e-46	71.4
AZE41531.1\|2377955_2378474_+	hypothetical protein	A0A2H4IZW4	uncultured_Caudovirales_phage	4.2e-53	64.5
AZE41532.1\|2378477_2379185_-	Gifsy-2 prophage protein	A0A2H4J991	uncultured_Caudovirales_phage	8.3e-92	70.0
AZE41533.1\|2379580_2380978_-	Transposase	W5R8L2	Staphylococcus_phage	2.2e-40	32.5

DBSCAN-SWA_4

3923980 : 3927112

uncultured_Caudovirales_phage(83.33%)

tail,integrase

attL 3915438:3915452|attR 3927225:3927239

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3915438:3915452	attL	NA	NA	NA	NA
AZE42955.1\|3923980_3924532_-	Phage endolysin	A0A2H4JHX4	uncultured_Caudovirales_phage	5.5e-67	68.1
AZE42956.1\|3924555_3925608_-\|tail	Phage tail protein D	A0A2H4JBF6	uncultured_Caudovirales_phage	1.4e-148	75.5
AZE42957.1\|3925665_3925872_-\|tail	Phage tail protein	E5E3W5	Burkholderia_phage	6.5e-05	46.0
AZE42958.1\|3925846_3926335_-	Phage protein U	A0A2H4J875	uncultured_Caudovirales_phage	1.7e-59	65.8
AZE42959.1\|3926415_3926793_+\|integrase	Phage-related integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	1.2e-41	70.7
AZE42960.1\|3926815_3927112_+	Integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	3.5e-20	59.4
3927225:3927239	attR	NA	NA	NA	NA

DBSCAN-SWA_5

4365076 : 4371335

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE43336.1\|4365076_4365469_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	6.7e-59	84.6
AZE43337.1\|4365472_4365835_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.5e-44	75.0
AZE43338.1\|4365834_4366134_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.1e-32	69.7
AZE43339.1\|4366130_4366466_+\|tRNA	tRNA 2-thiouridine synthesis protein TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	1.9e-46	82.0
AZE43340.1\|4366462_4367464_+	Anthranilate phosphoribosyltransferase like	A0A2H4JBY5	uncultured_Caudovirales_phage	1.8e-164	84.1
AZE43341.1\|4367553_4368561_+	Glutathione S-transferase, omega	NA	NA	NA	NA
AZE43342.1\|4368659_4370054_-	Precorrin-2 oxidase	NA	NA	NA	NA
AZE43343.1\|4370054_4371335_-\|tRNA	Seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.1e-101	55.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027752

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection