CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027723	Pseudomonas orientalis strain 8B chromosome, complete genome	6 crisprs	DEDDh,DinG,csa3,cas3,WYL,PD-DExK	4	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027723_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027723_2

1826668-1826763

Orphan

Consensus_repeat	Method
GGGGGCTTGCCCCTGATGGCGGCCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027723_2

>merge|CP027723|2|1826668-1826763|CRISPRCasFinder
GGGGGCTTGCCCCTGATGGCGGCCTCTGGGTCGACCAGGATTTTGTGTCGATCCTGCTCCAAATGTGGGAGGGGGCTTGCCCCCGATGGCGGCCTC

>CP027723|2|2|1826668-1826763|CRISPRCasFinder
GGGGGCTTGCCCCTGATGGCGGCCTC	TGGGTCGACCAGGATTTTGTGTCGATCCTGCTCCAAATGTGGGA
GGGGGCTTGCCCCCGATGGCGGCCTC

Protein	Signature genes	Signature genes Name	Protein_function
CP027723.1\|AZE83096.1\|1820320_1820635_-\|Transmembrane-protein	unknown	unknown	gnl\|CDD\|226941
CP027723.1\|AZE83108.1\|1829865_1830534_+\|heme-exporter-protein-CcmB	unknown	unknown	gnl\|CDD\|200083
CP027723.1\|AZE83110.1\|1831370_1831547_+\|Cytochrome-c-type-biogenesis-protein-CcmD	unknown	unknown	gnl\|CDD\|225656
CP027723.1\|AZE83106.1\|1827454_1829032_-\|Molecular-chaperone	unknown	unknown	gnl\|CDD\|376734
CP027723.1\|AZE83107.1\|1829233_1829869_+\|heme-export-ABC-transporter,-ATPase-component-CcmA	unknown	unknown	gnl\|CDD\|184125
CP027723.1\|AZE83104.1\|1825425_1826652_+\|Molybdopterin-molybdenumtransferase	unknown	unknown	gnl\|CDD\|238452
CP027723.1\|AZE83113.1\|1833984_1834521_+\|Cytochrome-c-type-biogenesis-protein-CcmG/DsbE,-thiol:disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|239308
CP027723.1\|AZE83101.1\|1823922_1824144_-\|putative-lipoprotein	unknown	unknown	gnl\|CDD\|380215
CP027723.1\|AZE83099.1\|1822567_1822903_+\|Transcriptional-regulator	unknown	unknown	unknown
CP027723.1\|AZE83097.1\|1820980_1822189_+\|Ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
CP027723.1\|AZE83114.1\|1834517_1834991_+\|Cytochrome-c-heme-lyase-subunit-CcmL	unknown	unknown	gnl\|CDD\|377161
CP027723.1\|AZE83111.1\|1831543_1831999_+\|Cytochrome-c-type-biogenesis-protein-CcmE,-heme-chaperone	unknown	unknown	gnl\|CDD\|237317
CP027723.1\|AZE83095.1\|1819926_1820316_-\|Putative-transmembrane-protein	unknown	unknown	gnl\|CDD\|227681
CP027723.1\|AZE83102.1\|1824223_1824826_-\|Molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|234725
CP027723.1\|AZE83100.1\|1822976_1823867_+\|Pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211332
CP027723.1\|AZE83098.1\|1822256_1822493_+\|Thiol-disulfide-isomerase	unknown	unknown	gnl\|CDD\|368604
CP027723.1\|AZE83103.1\|1824902_1825442_+\|Molybdenum-cofactor-biosynthesis-protein-MoaB	unknown	unknown	gnl\|CDD\|131715
CP027723.1\|AZE83105.1\|1827128_1827458_-\|flagellar-protein-FhlB	unknown	unknown	gnl\|CDD\|225166
CP027723.1\|AZE83112.1\|1832002_1833988_+\|Cytochrome-c-heme-lyase-subunit-CcmF	unknown	unknown	gnl\|CDD\|224061
CP027723.1\|AZE83109.1\|1830618_1831374_+\|Cytochrome-c-type-biogenesis-protein-CcmC,-putative-heme-lyase-for-CcmE	unknown	unknown	gnl\|CDD\|273492

Protein	Function_ID	Function_description	E-value
CP027723.1\|AZE83096.1\|1820320_1820635_-\|Transmembrane-protein	gnl\|CDD\|226941	COG4575, ElaB, Uncharacterized conserved protein [Function unknown].	1.71495e-29
CP027723.1\|AZE83108.1\|1829865_1830534_+\|heme-exporter-protein-CcmB	gnl\|CDD\|200083	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other].	1.14338e-69
CP027723.1\|AZE83110.1\|1831370_1831547_+\|Cytochrome-c-type-biogenesis-protein-CcmD	gnl\|CDD\|225656	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion].	5.48171e-20
CP027723.1\|AZE83106.1\|1827454_1829032_-\|Molecular-chaperone	gnl\|CDD\|376734	pfam02120, Flg_hook, Flagellar hook-length control protein FliK. This is the C terminal domain of FliK. FliK controls the length of the flagellar hook by directly measuring the hook length as a molecular ruler. This family also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems.	8.56482e-12
CP027723.1\|AZE83107.1\|1829233_1829869_+\|heme-export-ABC-transporter,-ATPase-component-CcmA	gnl\|CDD\|184125	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA.	1.04536e-122
CP027723.1\|AZE83104.1\|1825425_1826652_+\|Molybdopterin-molybdenumtransferase	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	5.26577e-162
CP027723.1\|AZE83113.1\|1833984_1834521_+\|Cytochrome-c-type-biogenesis-protein-CcmG/DsbE,-thiol:disulfide-oxidoreductase	gnl\|CDD\|239308	cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.	5.26027e-67
CP027723.1\|AZE83101.1\|1823922_1824144_-\|putative-lipoprotein	gnl\|CDD\|380215	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein. Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.	2.2033e-32
CP027723.1\|AZE83103.1\|1824902_1825442_+\|Molybdenum-cofactor-biosynthesis-protein-MoaB	gnl\|CDD\|131715	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B., molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	8.55492e-107
CP027723.1\|AZE83097.1\|1820980_1822189_+\|Ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	6.46957e-113
CP027723.1\|AZE83114.1\|1834517_1834991_+\|Cytochrome-c-heme-lyase-subunit-CcmL	gnl\|CDD\|377161	pfam03918, CcmH, Cytochrome C biogenesis protein. Members of this family include NrfF, CcmH, CycL, Ccl2.	2.33963e-74
CP027723.1\|AZE83111.1\|1831543_1831999_+\|Cytochrome-c-type-biogenesis-protein-CcmE,-heme-chaperone	gnl\|CDD\|237317	PRK13254, PRK13254, cytochrome c maturation protein CcmE.	1.15702e-82
CP027723.1\|AZE83095.1\|1819926_1820316_-\|Putative-transmembrane-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	3.01228e-33
CP027723.1\|AZE83102.1\|1824223_1824826_-\|Molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	3.86463e-82
CP027723.1\|AZE83100.1\|1822976_1823867_+\|Pseudouridine-synthase	gnl\|CDD\|211332	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.	8.47064e-119
CP027723.1\|AZE83098.1\|1822256_1822493_+\|Thiol-disulfide-isomerase	gnl\|CDD\|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	5.04705e-16
CP027723.1\|AZE83105.1\|1827128_1827458_-\|flagellar-protein-FhlB	gnl\|CDD\|225166	COG2257, COG2257, Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown].	2.05913e-32
CP027723.1\|AZE83112.1\|1832002_1833988_+\|Cytochrome-c-heme-lyase-subunit-CcmF	gnl\|CDD\|224061	COG1138, CcmF, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones].	0
CP027723.1\|AZE83109.1\|1830618_1831374_+\|Cytochrome-c-type-biogenesis-protein-CcmC,-putative-heme-lyase-for-CcmE	gnl\|CDD\|273492	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other].	1.03474e-91

>CP027723.1|AZE83104.1|1825425_1826652_+|Molybdopterin-molybdenumtransferase
MKPVDKPGKTGALMPVETALQRLLDMADAAPVHGRETVRLAECDGRVLAQDLVSTLDLPPWPNSAMDGYALRVSDWTGEPLPVSQRIFAGNAPEPLAPGSCARIFTGAPVPEGADCVEMQENAIIHGDERVSFSEPLQAGQNIRAQGQETTVGDLVLPAGTRLGPIELGLAASLGRDRLEVVRRVRVAVLSTGDELIEPGLPLGPGQIYNSNRRVLCSWLTRMGCEVIDAGILPDDLEQTRTRLAELGSVDLILSTGGVSVGEADFLGIALREEGELALWKLAIKPGKPLTCGHFRGVPVIGLPGNPASTLVTFALLARPYLLRRQGVEDVQPLRFEVPAGFVWAKPGNRREYLRGRIEQGKAIIYHNQSSGVLRSAAWAEGFVEVMEGTTLAAGDPVNFIPLNEVLN
>CP027723.1|AZE83103.1|1824902_1825442_+|Molybdenum-cofactor-biosynthesis-protein-MoaB
MKAKADAPFVPLNIAVLTVSDTRTLDTDTSGQVFVDRLGAAGHNLAERVLLKDDLYKIRAQVAHWIAEDVVQVVLITGGTGFTGRDSTPEAVGCLLDKQVDGFGELFRQISVADIGTSTVQSRALAGLANGTLVCCLPGSTNAVRTGWDGILAEQLDNRHRPCNFVPHLKQAEPCETRG
>CP027723.1|AZE83102.1|1824223_1824826_-|Molybdenum-cofactor-guanylyltransferase
MPPESSPLPCSILLLAGGRGQRMGGQDKGLLEWRGQPLIAHLQRLARPLTDDLIISCNRNHERYAAYADQLVSDDSADFPGPLAGIRAGLFAARHGHLLVLPCDVPHIDTRLLADLRATTHRNPQLPVMVRHGEFWEPLLCIIPVALKAQVEQAWQAGERSPRKILLQLGAVGLECPADDPRLANLNTPDLLHTRPGVSE
>CP027723.1|AZE83101.1|1823922_1824144_-|putative-lipoprotein
MTQRTIAALMLALGLATLAGCASPTVITLNDGREIQAVDTPKFDEDSGFYEFQQLDGKRTRINKDQVRTVKDL
>CP027723.1|AZE83100.1|1822976_1823867_+|Pseudouridine-synthase
MSTSGFSPSQHQASTLYLPPGPWATVLECLCEHFPAIAREQWLDRIARGRVLDSNGQPIRLDLPYKEGLCIYYFREVPNEKVIPVQETILYADEHLVVADKPHFLPVTPAGEYVEQTLLRRLIRRLDNPALVPLHRIDRHTAGLVLFSANPASRAAYQQLFPTRRIDKFYEAIAPALPDLTFPLVHKSRLVDGEPFFRMQEGPGASNTETAVEVREKHGDLWRYGLFPVTGKKHQLRVHMTALGASICNDPFYPVVIKDAEDDYANPLKLLAQGVRFIDPVSNQQRNFRSEITLAW
>CP027723.1|AZE83099.1|1822567_1822903_+|Transcriptional-regulator
MVNVEQLKSSVNRMSADIVRDAVNELRLDGLVTEGKTPFNKVHFNTCFAEIEALFQRAGYHKQLDVVGYQGLLYALYDPGRWEAVDVLRWLKEFTEAASASPVLRVQLAKA
>CP027723.1|AZE83098.1|1822256_1822493_+|Thiol-disulfide-isomerase
MLPECQLFGTLGCHLCEIAEAEIMPLVEHGLLVELVDITDPVDLTEVYGLRIPVLRRVDTGAELDWPFDTEQVVAFLR
>CP027723.1|AZE83097.1|1820980_1822189_+|Ammonium-transporter
MENLQSAVDTLVHSSNTLFILIGAVMVLAMHAGFAFLEVGTVRQKNQVNALSKILSDFAISTLAYFFIGYWISYGVSFMQPAAVISADHGYGLVKFFFLLTFAAAIPAIISGGIAERAKFAPQLCATALIVAFIYPFFEGVVWNGNFGVQAWLLATFGASFHDFAGSVVVHAMGGWLALAAVLLLGPRNGRYREGRLVAFAPSSIPFLALGSWILIVGWFGFNVMSAQTLNGVSGLVAVNSLMAMVGGTVAALVIGRNDPGFLHNGPLAGLVAICAGSDLMHPVGALVTGVVAGGLFVWCFMAAQDRWKIDDVLGVWPLHGLCGVWGGIACGLFGQTALGGLGGVSLISQLIGTALGVAVALVGGLLVYGVIKRVCGLRLSQEEEYYGADLSIHKIGAVSQD
>CP027723.1|AZE83096.1|1820320_1820635_-|Transmembrane-protein
MAGTSAKTAQEILMADFQTLVADTERLLDDTAVLAGDQADELRTKIHESLLKARETLQLTEDSLRERGQAAITATEDYVQANPWQSVGIAAGVGFLIGLLATRR
>CP027723.1|AZE83095.1|1819926_1820316_-|Putative-transmembrane-protein
MAIDESSSSKGAGTTSRRLGAAVLGLLHSHVELFGIELQEQKARTVSLLLFAGLALVFALLLLVGLSTLVMILVWDTGYRLTGIICLCVFYTLAAAFCGVRLKAAVFDESTPFHATLEELANDRERLLP
>CP027723.1|AZE83105.1|1827128_1827458_-|flagellar-protein-FhlB
MKNAAPPRQAIALKYDGQQAPTLTAKGDEALAEAILKLARENEVPIYENAELVKLLARMELGDSIPEELYRTVAEIIAFAWTLKGKFPVGYDPDAGPVERDVTERGDDY
>CP027723.1|AZE83106.1|1827454_1829032_-|Molecular-chaperone
MTGEINLPTLPPTPAAGQSPAPAPGALLKLLEPQIGLIDPGKTANAEVIALKQGGEAFQLLLKLTLDGGRQTLVQASSAQPLPLGSNVAVSQTPAGNLTLSLQQAFSANVAALTRIDTTQVPEGTLLQAKVLTTQTLPQGTTQPAIYRSLVTVLNNALAGATLTVESPQPLRVGSLLSAVVQNAQTLNFVPLSGLKDQLAVTQQLSTQQSRQGSLDAVFTALQNLPRGDSTSADLRAAAERLLAALPDLAQVSNPKVLAQLVQNSGAFLEAKLLAGQNPQIPPLDMKGALLRLVADLVPALPASTNLNAILAANTLAQVLPNFVRSPLGTLGQIGARQTPPSFPLPERLMAKLEGEGDLENLLRLAAGAIARLQSHQLSSLEQTGTTADGRLQTTWQLEIPMRSLQDIVPLQVKFQREEPTPDKEQSERKDRKDPKHMLWRVELAFDMEPLGPLQVQAQLTQGKLSSQLWATRAFTASLIENHLGSLRERLVASGLDVGDLDCHLGTPPRGPKTGLEQRWVDETA
>CP027723.1|AZE83107.1|1829233_1829869_+|heme-export-ABC-transporter,-ATPase-component-CcmA
MTSPLLEAVALSCERDLRLLFEHLDLRLAGGDMVQVSGPNGSGKTSLLRLLAGLMQPTAGAVRLNGKPLDEQRTALARNLIWIGHAAGIKDVLTAEENLSWLSALHHCASRDAIWQALAAVGLKGFEDVPCHTLSAGQQRRVALARLYLPGPPLWILDEPFTALDKQGVAQLEKHLAMHCEQGGTVLLTTHHSLTRLPAGYRELDLGRWSA
>CP027723.1|AZE83108.1|1829865_1830534_+|heme-exporter-protein-CcmB
MSVFALLVAREARLLCRRPAELANPLVFFAIVIALFPLAVGPETKLLQTLSPGLVWVAALLSVLLSLDGLFRSDFEDGSLEQWVLSSHPLPLLVLAKVLAHWVFSGLALVLLSPLLALMLGLPVECLPVLLLSLLLGTPVLSLLGAVGAALTVGLKRGGLLLALLILPLYIPVLILGSGALQAALMGMPVTGYLLWLGSLAALAVTLTPFAIAAGLKISVGE
>CP027723.1|AZE83109.1|1830618_1831374_+|Cytochrome-c-type-biogenesis-protein-CcmC,-putative-heme-lyase-for-CcmE
MNWTWFHKLGSPKWFYGISGRLLPWLSVAAVLLIGVGLVWGLAFAPPDYQQGNSFRIIYIHVPAAMLAQSCYVMLAVCGIVGLVWKMKLADVALQCAAPIGAWMTAVALVTGAIWGKPTWGSWWVWDARLTSMLILLFLYFGLIALGNAISNRDSAAKACAVLAIVGVINIPIIKYSVQWWNTLHQGATFTLTEKPAMPVEMWAPLLLMVLGFYCFFGAVLLLRMRLEVLKREARASWVKAEVQASLGAPA
>CP027723.1|AZE83110.1|1831370_1831547_+|Cytochrome-c-type-biogenesis-protein-CcmD
MSFASFSDFLAMGHHGLYVWTAYGICLAVLALNVAAPLLARKRYLQQEARRLRRETDK
>CP027723.1|AZE83111.1|1831543_1831999_+|Cytochrome-c-type-biogenesis-protein-CcmE,-heme-chaperone
MNPLRRKRLLIVLAILAGVGIAVGLALSALQQNINLFYTPTQIANGEAPVDTRIRAGGMVEKGSLKRSADSLDVSFVVTDFSKSVTITYRGILPDLFREGQGIVALGKLNASGVVVADEVLAKHDEKYMPPEVTKALKDSGQSAPTPAKEG
>CP027723.1|AZE83112.1|1832002_1833988_+|Cytochrome-c-heme-lyase-subunit-CcmF
MNAALFIPELGQLAMILALCFAIVQAVVPLLGAWRGDRLWMSLAQPAAWGQFAFLLFAFGCLTYAFMTDDFSVAYVANNSNSALPWYYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVMLARVLAVMGMISIGFLLFLIMTSNPFSRILPQIPMDGHDLNPLLQDIGLIVHPPMLYMGYVGFSVAFAFAIAALLGGRLDAAWARWSRPWTIVAWAFLGIGITLGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVLLAIAAFSLSLLGTFLVRSGVLTSVHAFASDPARGVFILIFLLFVVGGSLTLFALRAPVVKSQVGFNLWSRETLLLGNNLVLVVAASMILLGTLYPLVLDALSGAKLSVGPPYFNALFIPLMGLLMVVMAVGVLVRWKDTPVKWLAGMLMPVLLGSVALAVIAGVAYGDFNWAVLATFLLAAWVLLAGVRDIADKTRHKGLIKGLPTLTRSYWGMQIAHLGIAVCALGVVLSSQNSAERDLRLAPGESMDLGGYQFIFEGARHFEGPNFTSDKGTVRVVRNGKEIAVLHPEKRLYTVQSSMMTEAGIDAGFTRDLYVALGEPLGDGAWAVRVHVKPFVRWIWFGGLLTGLGGLLAALDQRYRVKVKSRVREALGMGAVV
>CP027723.1|AZE83113.1|1833984_1834521_+|Cytochrome-c-type-biogenesis-protein-CcmG/DsbE,-thiol:disulfide-oxidoreductase
MKRWLMVLPLAAFLVVAVFLYRGLYLDPAELPSAMIGKPFPAFSLPNVQGDRQLTRADLLGKPALVNVWATWCISCRVEHPVLNKLAEKGVVIYGINYKDDNAAALKWLAEFHNPYQLDIRDEDGNLGLNLGVYGAPETFFIDAKGVIRDKYVGVIDEVVWREQLAAKYQALVDEAKP
>CP027723.1|AZE83114.1|1834517_1834991_+|Cytochrome-c-heme-lyase-subunit-CcmL
MKRLLTAVVLALGLVGVAHAAIDTYEFANDAERERFRDLTKELRCPKCQNQDIADSNAPIAADLRKEIFRMLGEGKDNQQIIDFMVDRYGDFVRYKPALTGKTALLWFGPAGLLLTGVVVMAVIVRRRRAAPADGSDALSPEERKRLDQLLDTKTDD

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Crispr_ID: CP027723_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027723_3

2516256-2516460

Orphan

Consensus_repeat	Method
GATCCAAATGTGGGAGGGGGCTTG	PILER-CR
CTTGCCCCCGATGGCGGCCTCTGGGCCGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP027723_3

>merge|CP027723|3|2516256-2516460|PILER-CR,CRISPRCasFinder
GATCAAAATGTGGGAGGGGGCTTGTTCCCGTGACGGCCGGACAGCCTATAGCTGTCTGACTGATGCACCGCAATCCAAATGTGGGAGGGGCGGTGCGACGATTCGACTTGCCCCCGATGGCGGCCTCTGGGCCGACCGGGATTTTGTGTCGATCCTGGTCCAAATGTGGGAGGGGGCTTGCCCCCGATGGCGGCCTCAGGGCCGA

>CP027723|3|1|2516256-2516435|PILER-CR
GATCAAAATGTGGGAGGGGGCTTG	TTCCCGTGACGGCCGGACAGCCTATAGCTGTCTGACTGATGCACCGC
AATCCAAATGTGGGAGGGGCGGTG	CGACGATTCGACTTGCCCCCGATGGCGGCCTCTGGGCCGACCGGGATTTTGTGTCGATCCTGGTCC
AAATGTGGGAGGGGGCTTG

>CP027723|3|3|2516362-2516460|CRISPRCasFinder
CTTGCCCCCGATGGCGGCCTCTGGGCCGA	CCGGGATTTTGTGTCGATCCTGGTCCAAATGTGGGAGGGGG
CTTGCCCCCGATGGCGGCCTCAGGGCCGA

Protein	Signature genes	Signature genes Name	Protein_function
CP027723.1\|AZE83685.1\|2519161_2519551_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371400
CP027723.1\|AZE83680.1\|2513607_2513838_-\|hypothetical-protein	unknown	unknown	unknown
CP027723.1\|AZE83690.1\|2521618_2522596_+\|Putative-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
CP027723.1\|AZE83678.1\|2511649_2513242_+\|Methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
CP027723.1\|AZE83692.1\|2523909_2524803_-\|Transcriptional-regulator,-AraC-family	unknown	unknown	gnl\|CDD\|225117
CP027723.1\|AZE83681.1\|2513960_2514236_-\|hypothetical-protein	unknown	unknown	unknown
CP027723.1\|AZE83688.1\|2520591_2520819_+\|hypothetical-protein	unknown	unknown	unknown
CP027723.1\|AZE83683.1\|2515214_2516231_+\|putative-periplasmic-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270359
CP027723.1\|AZE83686.1\|2519645_2520083_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372505
CP027723.1\|AZE83689.1\|2521130_2521493_-\|NTP-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|240025
CP027723.1\|AZE83682.1\|2514611_2515082_+\|hypothetical-protein	unknown	unknown	unknown
CP027723.1\|AZE83684.1\|2516941_2519068_-\|Outer-membrane-vitamin-B12-receptor-BtuB	unknown	unknown	gnl\|CDD\|238657
CP027723.1\|AZE83677.1\|2511063_2511468_+\|DksA-family-protein	unknown	unknown	gnl\|CDD\|274124
CP027723.1\|AZE83687.1\|2520165_2520495_+\|Valyl-tRNA-synthetase	unknown	unknown	unknown
CP027723.1\|AZE83693.1\|2524821_2526423_-\|ABC-type-nickel/oligopeptides-specific-transport-system,-ATPase-component	unknown	unknown	gnl\|CDD\|226641
CP027723.1\|AZE83691.1\|2522643_2523273_+\|Ribonuclease-precursor	unknown	unknown	gnl\|CDD\|238513
CP027723.1\|AZE83675.1\|2508038_2509592_+\|Inositol-transport-system-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
CP027723.1\|AZE83676.1\|2509617_2510640_+\|Inositol-transport-system-permease-protein	unknown	unknown	gnl\|CDD\|224093
CP027723.1\|AZE83679.1\|2513293_2513536_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378527
CP027723.1\|AZE83674.1\|2507044_2507974_+\|Inositol-transport-system-sugar-binding-protein	unknown	unknown	gnl\|CDD\|380524

Protein	Function_ID	Function_description	E-value
CP027723.1\|AZE83685.1\|2519161_2519551_-\|hypothetical-protein	gnl\|CDD\|371400	pfam11162, DUF2946, Protein of unknown function (DUF2946). This family of proteins has no known function.	2.37574e-07
CP027723.1\|AZE83686.1\|2519645_2520083_+\|hypothetical-protein	gnl\|CDD\|372505	pfam13160, DUF3995, Protein of unknown function (DUF3995). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 138 and 149 amino acids in length. There are two completely conserved residues (W and P) that may be functionally important.	9.81044e-19
CP027723.1\|AZE83678.1\|2511649_2513242_+\|Methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	2.91278e-52
CP027723.1\|AZE83692.1\|2523909_2524803_-\|Transcriptional-regulator,-AraC-family	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	8.46832e-28
CP027723.1\|AZE83689.1\|2521130_2521493_-\|NTP-pyrophosphohydrolase	gnl\|CDD\|240025	cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	3.18293e-43
CP027723.1\|AZE83683.1\|2515214_2516231_+\|putative-periplasmic-substrate-binding-protein	gnl\|CDD\|270359	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	9.67532e-117
CP027723.1\|AZE83690.1\|2521618_2522596_+\|Putative-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	5.45275e-57
CP027723.1\|AZE83684.1\|2516941_2519068_-\|Outer-membrane-vitamin-B12-receptor-BtuB	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.40605e-68
CP027723.1\|AZE83677.1\|2511063_2511468_+\|DksA-family-protein	gnl\|CDD\|274124	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].	9.92716e-28
CP027723.1\|AZE83693.1\|2524821_2526423_-\|ABC-type-nickel/oligopeptides-specific-transport-system,-ATPase-component	gnl\|CDD\|226641	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only].	0
CP027723.1\|AZE83691.1\|2522643_2523273_+\|Ribonuclease-precursor	gnl\|CDD\|238513	cd01062, RNase_T2_prok, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the prokaryotic RNase T2 family members.	6.56808e-66
CP027723.1\|AZE83675.1\|2508038_2509592_+\|Inositol-transport-system-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
CP027723.1\|AZE83676.1\|2509617_2510640_+\|Inositol-transport-system-permease-protein	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	1.84892e-89
CP027723.1\|AZE83679.1\|2513293_2513536_-\|hypothetical-protein	gnl\|CDD\|378527	pfam10982, DUF2789, Protein of unknown function (DUF2789). This bacterial family of proteins has no known function.	4.50139e-32
CP027723.1\|AZE83674.1\|2507044_2507974_+\|Inositol-transport-system-sugar-binding-protein	gnl\|CDD\|380524	cd06301, PBP1_rhizopine_binding-like, periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type 1 periplasmic binding protein superfamily.	4.87827e-122

>CP027723.1|AZE83683.1|2515214_2516231_+|putative-periplasmic-substrate-binding-protein
MKGLRTLLAASLTSLGLSLASVPVSAAQAPVHFADLNWESGSLITEVLRFIVEKGYDLPTDTMPGTTITLETALARNDIQVIGEEWAGRSPVWVKAEAQGKVVGLGDTVKGATEGWWVPEYVVKGDPARNIKPLAPELKSVEDLARYKDVFKDPESPGKGRFLNSPIGWTSEVVNKQKLKAYGLDDSYVNFRSGSGAALDAEIASSIRRGKPVLFYYWSPTPLMGRYKLIQLQEPPFDAEAWKTLTDADNPDPKPTRSLASKLSIGVSTPFQKEHPQITQFFEKVEFPIEPLNEALASMSEHHTPPRDVAQAFLKAHPEVWKAWLTEDVASKVESALK
>CP027723.1|AZE83682.1|2514611_2515082_+|hypothetical-protein
MAVSNLDMHALFVLGDLRAKLVKQFQSRFVYVTEQTPEGIYIAEIDTEAALVVDDKPRLELKVGDHFRAAVLPSREGGKFELKFRDIKLTVYGLGDYAFVSSAEGEGIVFKEGHSVMLVFAAHEQLHEGLTKTLKAVTGKAAKWRKGELVTFKASE
>CP027723.1|AZE83681.1|2513960_2514236_-|hypothetical-protein
MQRRQHDTASFYTRSSCPDEHQYYCLPAPDGYSHSVLYRVVPAGRNFFHIQEVTSGRIKGFRSDHTKACALARALEANLQRLHGTLVSSAG
>CP027723.1|AZE83680.1|2513607_2513838_-|hypothetical-protein
MTEFDIGEFFIHGDAREVDGEFQAVIIMRAKPPLTTVTTHQVEKDRWFKTVDAAAIAAKEAAKALKAAVDSGALTS
>CP027723.1|AZE83679.1|2513293_2513536_-|hypothetical-protein
MDTTTPTLETLFDQLGLDSTQEGIERFTAEHRLPDDVKLIDAPFWSEQQASFLKEQLHVDAEWAPAVDDLNALLHESPVA
>CP027723.1|AZE83678.1|2511649_2513242_+|Methyl-accepting-chemotaxis-protein
MGAAVPPHTVARVLPGWLTPLAQSTALVLLLLGLAFARLPIYLCLPLALLVIWLPRLKRPKPSVAHAAPGDAIGELTRDLSHTTSHNALSAAGVAYSVRQLAARLQSQLSASQQIVSSAQVMIGTEQVTAQLSRQALGASSQAHQRSNEGREVLVQSITRMHQLSQRADASRTLIEALSQRSEDIQRVTLVIQSIASQTNLLALNAAIEAARAGEHGRGFAVVADEVRGLAGRTATATEEVGGMVADIQQRTAQVVEQIRQLSADLHTGVEQVENAGEHLASIAGLAADVEQQVSEIAQGTDTNRSQLDSLFHAVEQMRSDLAVSDQQTRQLADAAVQMEGQAETISERLAQVGLDDYHQRIYDLAREGARCIGEQFEADVLHSRISLEDLFDRSYTPIPNTHPSKYKTRFDAYTDQVLPAIQEALLPRHEGLVFAIACTPQGYVPTHNKAFSHALTGDAQMDAVQNRTKRKFDDRTGLRCGSHQQALLLQTYTRDTGELMHDLSVPIMVQGRHWGGLRLGYKPQGAKRH
>CP027723.1|AZE83677.1|2511063_2511468_+|DksA-family-protein
MTKEKLLAMPADDYMNAEQHAFFEKLLQDMKVEHHERIEQNRIAIESLDTPADPADAASVEEERTWLVNAIDRDQRMLPQLERALERIKEDSFGWCDDSGEPIGLKRLLISPTTKYCIEAQERHEQIDKHQRQA
>CP027723.1|AZE83676.1|2509617_2510640_+|Inositol-transport-system-permease-protein
MNAITDNKPATAPVKHRRRMPTELSIFLVLIGIGLVFELFGWIVRDQSFLMNSQRLVLMILQVSIIGLLAIGVTQVIITTGIDLSSGSVLALSAMIAASLAQTSDFSRAVFPSLTDLPVWIPVAMGLGVGLLAGAINGSIIAVTGIPPFIATLGMMVSARGLARYYTEGQPVSMLSDSYTAIGHGAMPVIIFLVVAVIFHIALRYTKYGKYTYAIGGNMQAARTSGINVKRHLIIVYSIAGLLAGLAGVVASARAATGQAGMGMSYELDAIAAAVIGGTSLAGGVGRITGTVIGALILGVMASGFTFVGVDAYIQDIIKGLIIVVAVVIDQYRNKRKLKR
>CP027723.1|AZE83675.1|2508038_2509592_+|Inositol-transport-system-ATP-binding-protein
MLAHATVSPPPGIQPLAQDEPYLLEILNISKGFPGVVALDNVQLRVRPGTVLALMGENGAGKSTLMKIIAGIYQPDAGEIRLRGKPITFETPLAAQKAGIAMIHQELNLMPHMSIAENIWIGREQLNSLHMVNHREMHRCTADLLARLRINLDPEEQVGNLSIAERQMVEIAKAVSYDSDILIMDEPTSAITEKEVAHLFSIIADLKSQGKGIVYITHKMNEVFAIADEVAVFRDGQYIGLQRADSMNSDSLISMMVGRELSQLFPVRETPIGDLLLSVRNLSLDGVFKDVSFDLHAGEILGIAGLMGSGRTNVAETIFGITPSSSGQITLDGKPVRISDPHMAIEKGFALLTEDRKLSGLFPCLSVLENMEMAVLPHYSGNGFIQQKALRALCEDMCKKLRVKTPSLEQCIDTLSGGNQQKALLARWLMTNPRLLILDEPTRGIDVGAKAEIYRLIAFLASEGMAVIMISSELPEVLGMSDRVMVMHEGELMGTLDRADATQEKVMQLASGMTAVH
>CP027723.1|AZE83674.1|2507044_2507974_+|Inositol-transport-system-sugar-binding-protein
MKTPIRFTALALSMLLASGVAAAADLKVGVSMSAFDDTFLTYLREDMDKQAKSYPKGDGVQLQFEDARADVVKQLSQVENFISQKVDAIIVNPVDTASTANIIKAATAAKIPLVFVNRRPDQKDLPKDVVAVTSDDVEAGKLQMQYIAEKLGGKGKIVILLGDLANNSTTNRTKGVKEVLAKYPDIKIEQEQTGIWLRDRGMTLVNDWLTQGRDFNAVLANNDEMAIGAAMALKSAGKKDVLIAGVDGTPDGLNAITKGDMAASAFQDAKGQAVGSVEAARKMARHEPVEQNVVIPFKLITPDNVKDFK
>CP027723.1|AZE83684.1|2516941_2519068_-|Outer-membrane-vitamin-B12-receptor-BtuB
MKHLPLLAGLFGCLPVCAPALELAPTTIEGEQSLDPGLALDQPSGMASRLGLTVRETPASVAIATRNAIERHGARTFRDAANTLPGVNASAPPGFGGFVSYRGFTSSQITQMFNGISVATGLARPVDAWIYDRVELVGGPSSLINGAGSVGGSLNYVTKLASREEQAVEGQLTYGSHDTAGLALGFNHALTERGAEVQHYARLDVSRNTQHSYIDRDQREAWSVAFSLLSDLTPDLSHTLALEYQDEHEDSPYWGTPVLNPKAGELKIDRHNRFNNYNVADGRYEQRTIWARSIIDYRINDSTTLKNTLYHLDSQRDYRNLETYQYNADNSAVNRSTAYQVRHQGEQNGNQFELRHEDAVFGLATTWSAGFEYKVNSTTNSPLNVPGNSTVDPNGYNPGHFYDIPGTRPGFIKDKTSAVTTKALFVENRLGLTDTLSLLTGLRYDAIDLDVTNHRAVTASNPRHLKRSWEPVTGRVGLTYQFMPSANVYVQYSTAAEQPSTTTQVFDVSTGKQWEIGSKFDYLDGRGAATLAVYKIERKDFAVTDPQDPTRSIPVGAQSSRGIELASSLRLTPSLLAEGNVAWVDAQYDDFNEKTASGAVVSRKGNTPTNVPRRVDNLWLTYDFSEDWQGGMDARYVAQVYADNANTQTVPAYTVFGSFLRYKVDSHTSITGRVRNLTNEVYAEFAHVSPAYYLGSPRTFEVAVQTRF
>CP027723.1|AZE83685.1|2519161_2519551_-|hypothetical-protein
MKLARTDRSLIAWLLYGCVLFNVFACSIGHGQTVGLQLNGISGQFCTVDPRTQAPVQSDSTDDSLPTLAKAFGCPLCSTGGMGPALNSHLNVAVLPQPHAPPAAVVLAADIPARLTWPTANPRAPPTSA
>CP027723.1|AZE83686.1|2519645_2520083_+|hypothetical-protein
MSFAVARWIVGIFTCISMVHLYWAAGGKLGSLAAIPQLPGEFAAGPRPAFKPSALGTFLVAMGLVAIALLVCLRAGLYFSPVSHGALQWGISAIAVVMFARAIGDSELVGFFKKVVGSRFARLDTYFYSPLCLVLGAGLLIVAWA
>CP027723.1|AZE83687.1|2520165_2520495_+|Valyl-tRNA-synthetase
MRTVGIMLVACSLAGGAAAAQARELREGDKYMCSWGAGTAARAQELKLSGVSLYAARQKIQTLKFNKSWMRMMAMGITEQTYDSRSRLKPEAIRQSFYQDCLRYRVARK
>CP027723.1|AZE83688.1|2520591_2520819_+|hypothetical-protein
MRNFVVGVLGLAALLGFYFVQLNAEADRQREVAAEQLALCLHLKRVAGAAASTPVELGEACRQLNLEFLKSVKVE
>CP027723.1|AZE83689.1|2521130_2521493_-|NTP-pyrophosphohydrolase
MKIRATVICEHEGHILFVRKARSKWALPGGKVERGERPVGAAERELEEETGLNVDGLLYLQELKARDTLHHVFEASVVNVDEARPCNEIVECKWYAYGALDELDTTDATRHIVKSFLRRL
>CP027723.1|AZE83690.1|2521618_2522596_+|Putative-oxidoreductase
MSTVRWGMIGCGSVTELKSGPAFYKAPGSALVAVMGRREEAVRDYATRHGIARFYTDAQALIDDPEVDAVYIATPPDSHLEYSLMVAAAGKHCCVEKPMALNAEQSALMQRTFERAGLHLFVSYYRRSLPRFQQVRAWLQDGRIGELRHLTWTLCKPAAPADTNPGNWRTDPAIAGGGYFADLASHGFDLFQYLAGDIVEVSGFTARQAGRYAAEDAVTACWTFASGALGMGCWNFVADRREDRVELIGSRGRITFAVFEDQPLRLEGETDEVLEVPCHAHIQWHHVLAMNAHIRGEAKHPSLAIEALKTDRILDKVLQRYSQHP
>CP027723.1|AZE83691.1|2522643_2523273_+|Ribonuclease-precursor
MKYWMLLWLLIVTGTTAAPRSQGQAGEFDFYVLSLSWSPTFCLTHPNNEQCSGKGYGFVLHGLWPQYAKGGWPASCAPQSRLSDEAMEKGATLFPTRALLKHEWAKHGTCSGLEPLEYLEKSDTALGAVVIPQQLQPFNTPPSLSASEIEALFRDSNPRMGDHGMAVICKGRVLSEVRVCLTKDLAFAGCPRSVKSQCRGGDIRIPAQR
>CP027723.1|AZE83692.1|2523909_2524803_-|Transcriptional-regulator,-AraC-family
MSLNSPAHPAHSPRFWRDERLPFIEARTIADGRKVTYTRHAHEHFSIGAITAGRSYYHYGERTFQISAGTVVLMNPGDVHACNPIENQHWSYHMLYLDTPWLTDLQHQLGFSTDQGYRPFNTPHTRDTSLYNGLLALYRLLVDERAELLHKQSALVGYFSDVQQRLNPSLTPVREVNHKLERAADYIREHCTEALKLEDICHAAELSPSYLIRAFKQYYGLTPHAFLVNRRIQFARTQLRNGELIADVALAAGFADQAHFQRAFKQHFAATPGQYRETLKPSANNPHWPPATRPWSG
>CP027723.1|AZE83693.1|2524821_2526423_-|ABC-type-nickel/oligopeptides-specific-transport-system,-ATPase-component
MNQDNLIEIRDLSVEFVTGEHQHRVVNHVSFDIKRGETLALVGESGSGKSVTAHSILRLLPYPLARHPSGTISYAGHDLLTLKEKTLRHIRGNRIAMIFQEPMTSLNPLHCIEKQINEVLGLHKGLTGKVATRRTLELLELVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILELLKELQARLGMALLLISHDLNLVRRIAHRVCVMQQGCIVEQADCETLFQAPQHPYTQELLAAEPSGEPAANAVGPALLEVEDLKVWFPIKKGFLRNTVDYVKAVDGINFTLPQGQTLGIVGESGSGKSTLGLAILRLIGSQGGIRFEGQPLDRLTQQQVRPLRREMQVVFQDPFGSLSPRMCVSEIVGEGLRIHKMGTPAEQEAAIIAALKEVGLDPESRHRYPHEFSGGQRQRIAIARALVLKPRLILLDEPTSALDRTVQRQVVELLRGLQAKYNLTYLFISHDLAVVKALSHQLMVVKQGQVVEQGDAGTIFANPQHAYTRQLLEAAFLVPA

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Crispr_ID: CP027723_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027723_4

2994180-2994273

Orphan

Consensus_repeat	Method
ACATTTGGGCCAGGATCGACACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027723_4

>merge|CP027723|4|2994180-2994273|CRISPRCasFinder
ACATTTGGGCCAGGATCGACACAAAATCCTGGTCGGCCCTGAGGCCGCCATCGGGAGCAAGCCCCCTCCGACATTTGGGCCAGGATCGACCCAA

>CP027723|4|4|2994180-2994273|CRISPRCasFinder
ACATTTGGGCCAGGATCGACACAA	AATCCTGGTCGGCCCTGAGGCCGCCATCGGGAGCAAGCCCCCTCCG
ACATTTGGGCCAGGATCGACCCAA

Protein	Signature genes	Signature genes Name	Protein_function
CP027723.1\|AZE84102.1\|3002069_3002186_-\|hypothetical-protein	unknown	unknown	unknown
CP027723.1\|AZE84091.1\|2990970_2991378_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377558
CP027723.1\|AZE84101.1\|3001389_3001587_-\|hypothetical-protein	unknown	unknown	unknown
CP027723.1\|AZE84092.1\|2991467_2993531_-\|Trehalose-synthase	unknown	unknown	gnl\|CDD\|131508
CP027723.1\|AZE84094.1\|2995266_2996193_+\|4-hydroxyproline-epimerase	unknown	unknown	gnl\|CDD\|172473
CP027723.1\|AZE84089.1\|2988576_2990202_+\|ABC-transporter,-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
CP027723.1\|AZE84085.1\|2984647_2984764_-\|hypothetical-protein	unknown	unknown	unknown
CP027723.1\|AZE84084.1\|2984361_2984577_-\|hypothetical-protein	unknown	unknown	unknown
CP027723.1\|AZE84090.1\|2990285_2990744_-\|heat-shock-protein-A	unknown	unknown	gnl\|CDD\|183223
CP027723.1\|AZE84083.1\|2983179_2984235_-\|D-3-phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240650
CP027723.1\|AZE84093.1\|2994296_2995085_-\|Transcriptional-regulator,-AraC-family	unknown	unknown	gnl\|CDD\|225117
CP027723.1\|AZE84099.1\|2999852_3000461_-\|Transporter,-LysE-family	unknown	unknown	gnl\|CDD\|224199
CP027723.1\|AZE84096.1\|2997249_2998497_+\|D-amino-acid-dehydrogenase-family-protein-in-hydroxy-L-proline-catabolic-cluster	unknown	unknown	gnl\|CDD\|223737
CP027723.1\|AZE84097.1\|2998507_2999518_-\|Transcriptional-regulator,-AraC-family	unknown	unknown	gnl\|CDD\|227311
CP027723.1\|AZE84087.1\|2986726_2987677_+\|ABC-transporter,-permease-protein	unknown	unknown	gnl\|CDD\|223674
CP027723.1\|AZE84098.1\|2999713_2999845_+\|hypothetical-protein	unknown	unknown	unknown
CP027723.1\|AZE84088.1\|2987680_2988580_+\|Dipeptide-transport-system-permease-protein-DppC	unknown	unknown	gnl\|CDD\|224094
CP027723.1\|AZE84086.1\|2985101_2986730_+\|ABC-transporter,-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173857
CP027723.1\|AZE84095.1\|2996245_2997193_+\|1-pyrroline-4-hydroxy-2-carboxylate-deaminase	unknown	unknown	gnl\|CDD\|223406
CP027723.1\|AZE84100.1\|3000696_3000945_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP027723.1\|AZE84091.1\|2990970_2991378_+\|hypothetical-protein	gnl\|CDD\|377558	pfam05818, TraT, Enterobacterial TraT complement resistance protein. The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between an Escherichia coli and its surroundings.	0.000412863
CP027723.1\|AZE84092.1\|2991467_2993531_-\|Trehalose-synthase	gnl\|CDD\|131508	TIGR02455, trehalose_synthase_putative, trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits. [Energy metabolism, Biosynthesis and degradation of polysaccharides, Cellular processes, Adaptations to atypical conditions].	0
CP027723.1\|AZE84094.1\|2995266_2996193_+\|4-hydroxyproline-epimerase	gnl\|CDD\|172473	PRK13970, PRK13970, 4-hydroxyproline epimerase.	9.9642e-151
CP027723.1\|AZE84089.1\|2988576_2990202_+\|ABC-transporter,-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
CP027723.1\|AZE84095.1\|2996245_2997193_+\|1-pyrroline-4-hydroxy-2-carboxylate-deaminase	gnl\|CDD\|223406	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane].	1.82729e-66
CP027723.1\|AZE84083.1\|2983179_2984235_-\|D-3-phosphoglycerate-dehydrogenase	gnl\|CDD\|240650	cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.	4.09614e-72
CP027723.1\|AZE84090.1\|2990285_2990744_-\|heat-shock-protein-A	gnl\|CDD\|183223	PRK11597, PRK11597, heat shock chaperone IbpB; Provisional.	2.50418e-45
CP027723.1\|AZE84099.1\|2999852_3000461_-\|Transporter,-LysE-family	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	2.40491e-36
CP027723.1\|AZE84093.1\|2994296_2995085_-\|Transcriptional-regulator,-AraC-family	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.77463e-28
CP027723.1\|AZE84096.1\|2997249_2998497_+\|D-amino-acid-dehydrogenase-family-protein-in-hydroxy-L-proline-catabolic-cluster	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	2.75643e-41
CP027723.1\|AZE84097.1\|2998507_2999518_-\|Transcriptional-regulator,-AraC-family	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	1.29645e-94
CP027723.1\|AZE84087.1\|2986726_2987677_+\|ABC-transporter,-permease-protein	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	7.92163e-94
CP027723.1\|AZE84088.1\|2987680_2988580_+\|Dipeptide-transport-system-permease-protein-DppC	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	8.09477e-79
CP027723.1\|AZE84086.1\|2985101_2986730_+\|ABC-transporter,-substrate-binding-protein	gnl\|CDD\|173857	cd08492, PBP2_NikA_DppA_OppA_like_15, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0

>CP027723.1|AZE84092.1|2991467_2993531_-|Trehalose-synthase
MTAADNDHVNWLVQQSMLNAARQRAKLYSGQGRMWQQPFAQTRPRDASALSSVWFTAYPASIVTREDGTVLEALGDETLWHALSKIGIQGIHNGPLKKSGGLSGTRHTPTIDGNFDRISFDIDPQLGTEAQLQALTRMAAAHNAVIIDDVIPSHTGKGADFRLAEMAYEDYPGLYHMVEIREEDWALLPDVAEGRDAQNLSPPQVDALRDKHYIVGQLQRVIFFEPGVKETDWSATPVVVGVDGKPRRWVYLHYFKEGQPSLNWLDPSFAAQQMIIGDALHAIDVMGAKILRLDANGFLGVERKLDGSAWSESHPLSITGNQLLGGAIRKAGGFSFQELNLTVDDIASMSHGGADLSYDFITRPAYQHALLMGDAEFLRLMLRQMHSLGIDPGSLIHALQNHDELTLELVHFWTLHAHDSFMFQGQTFPGNILREHIREQMYERLTGEHAPYNLKFVTNGVSCTTASIITAALGIRDLDAITAADVQQIRQIHLLLVMYNAMQPGVFALSGWDLVGALPLAAEEVGHLMADGDTRWIHRGAYDLVDLNPDAELSAGQMPRSRSLYGSLNSQLQDPDSFASQLQKILGVRRAYDIAASRQILIPDVEHPGLLVMVHELPAGKGTQITALNFGATPITESLHLPNIAPGPVVDIINERVEGDLTEEGTFTITLDAYEGLALRVVSSTPM
>CP027723.1|AZE84091.1|2990970_2991378_+|hypothetical-protein
MKMTLPALALGILISQGASAAGDGTAALGGGVGGVLGNVVGGQLGGSTGAAIGAGVGGATGSAVGARKGNRAEAALGGGVGAAGGSVIGNHLGGSTGSAIGAGLGGAAGGAVGNNLGDDGGKHKGNKHKHKNKHR
>CP027723.1|AZE84090.1|2990285_2990744_-|heat-shock-protein-A
MATTLSLAPLFRQSVGFDRFNDLFESALRSEAPNSYPPHNVEKHGDDAYRIVIAVAGLTEEDLDIQVERGVLTVSGGKRETDEKVAYLHQGIAQRAFRLSFRLADHIEVRGAALNNGLLSIDLLREVPEEAKPKRIMIGGEAKPELRQVSLQ
>CP027723.1|AZE84089.1|2988576_2990202_+|ABC-transporter,-ATP-binding-protein
MSVTAPLVDIRQLSVSYRSGTQVNQAIRGLSLSIATGETVAIVGESGSGKSTLANAILGLLPDTARISAGQLWVDGNDLTHAGERQKRRLRGRTIGLVPQDPMVSLNPTLRIGQQIAEALILAKGKRYPGADADILELLRQVGIDKPVVRARQYPHQLSGGMRQRVLIAIALAGNPRLIIADEPTSALDVTVQRKILDHLQRLVRERGISLLIITHDLGVATDRGDRILVMQQGELVEHGSPRQILGAPRHDYTRELIAAAPALAKRREPLARIEPSHTPILSLQHVGKTFALPRIRGEDSTFVALEDLSLAVYPGQTLAIVGESGSGKSTALRIALGLEKPTRGRVWFEQQDVTDLSWRDFRPLRQRLQLVQQNPFAALDPRLSVFDSIVEPLVSFGLLKGPALEQAAREMMARVHLPVSYLDRLPRELSGGQCQRVAIARALVLKPDLLLLDEPVSALDVSVQATILDLLEELQREMGIAYVLVSHDLSVVANFAHQVLVLRNGRVVERGSVEQLFNQPANAYTRELIAAIPGQRVTAA
>CP027723.1|AZE84088.1|2987680_2988580_+|Dipeptide-transport-system-permease-protein-DppC
MTIPEQSLGRKAIRADAGLWRRRSRLQRATTVVLPLLRRPGFSLALLVVVFALLAAVVPHGLSSFDPYATAPIDKLRPPDLTHWFGTDELGRDLYTRVVFGSSLSVLAAFLAVGIALVGGLGLGILSGFAGGRIDALIMRLVDVLLALPGLLLALAIVTAIGFGTVPVAIAVGVGIIPGFARTTRAEVLRVKTLPYVEAARLGGASWGRTLLRHILPNAWGPVAVLATLDFGAAILATAGLSFLGFGAAPPAAEWGTLIANGRHFLITAPWVSLLPGLFLVAVVFSLNHIARTFEEIQR
>CP027723.1|AZE84087.1|2986726_2987677_+|ABC-transporter,-permease-protein
MSRYLVGRVGQALLVLWGAYSITYFILYLLPGDTLSIMLSASGMEADSLSVQDLAKARAYYGLDKGLFERYFDLLLGALRGDFGQSLSLNRPVAELLAERLPQTLALAGLAIVLSLLGGIGLAYLTAYIRWQPLKKALARLPSLGFSVPVFWMGLLLIQVFAFGLGWFPATGSRGMESLVLPAITLAIPSAAVYAQVLQRSFQGVWKESYIATAYAKGLSRGQVQARHGFKNAALPILTLIGLQVGNTVSGAVLVENIFARSGIGRLAQEAVLRQDIPVVLAIVAVSAAAFVCVNLLVDLLYPLLDPRISHTPKVS
>CP027723.1|AZE84086.1|2985101_2986730_+|ABC-transporter,-substrate-binding-protein
MNTSNLMSRLLAPCALALSLTACSPGNDTQAGKTLSIAFFGDNTTLVSVDPFQVYWLEHRVLLRNVAESLTDQDPQTGTIIPWLAKRWEVSDDALTYTFHLRDDVTFSNGERFDAQAVKTAFDSNKALATELPATFGATYLAGYDHAEVVDTLTVKLVLSKPNAGFLQATSTTNLAILAPASYALTAKERSLGKIIGTGPFVLASYTPEVGAHLTRRKGYAWASANMKNQGEAHLDAVDISYIPEESVRNGLFLQGKADILWPRNPFSEVNQKLFQSKGATIQSRSLPGPALNLYPNTRGARILADRQVRLALQKSLDRKSYASTVYNAQFPVVDGIFDVTTPYFKSQGNKLAYDPAGAEQLLEQAGWTRGADGYRQKNGKRLSLSYNISPSETAGDVLIQDQLRKVGIELKLSVVTRAEWVANNAAGNYDLTLNYMTRADPIILQTILDPRSANSSTVATNTYEPAVLEKAKGLFDAGITATQSPQRAAAYGELQDLLIDQSSAFPVYERVWQAATSPRVKNFHWTAEGFALLGDIEVDTP
>CP027723.1|AZE84085.1|2984647_2984764_-|hypothetical-protein
MTEEKRKEPEEQTPAHSTEEERERLKDFNKDGIPPGAC
>CP027723.1|AZE84084.1|2984361_2984577_-|hypothetical-protein
MVDENNGPAAPYPGPEKQVPDLGEGHETALDRAESEPKQGAGEKPEDWNPPPGNPGSDQDAQTGRDNGGAK
>CP027723.1|AZE84083.1|2983179_2984235_-|D-3-phosphoglycerate-dehydrogenase
MALTTLILDAPGPPLLFEEVDRFLELGLAVTLNLHYFADRARIRQHYGTRIDYTEINCHDEPGFIAAVNRAGGYSVFKTRLNIPIGASLIRAATSPALATPLRAIAQAGAGVNHIDRRECEQCGVTILNTPGSNAIAVAEYVLAQALFLSRDLDDYNAQTHNGHWAKGTLAPAPEYAELTLGLVGTGNIARQVARKAAALGIKVIATGSERFTEPVAHSLGLERRADLAQLLAEADIVSIHIPLIPLTRGLFGAAEFRQMRQGSILINTARGGIVDEHQLADFMRQFPRHIKAVAIDTFALERDRFDSPLIDIPNAQLTPHIAGNTTTAIRMASRQIVDQIHAFGAGVMVR
>CP027723.1|AZE84093.1|2994296_2995085_-|Transcriptional-regulator,-AraC-family
MVQHVFASLLQGSRPHSIEQLLTGAAQLLPLLDVIPNAAIFIKDIEARYVLANRTLVQRCGLRYLQPLLGKTSAEVFPAQLGPGYTEQDRRVLQQGLVLEDQLELHLYGSREPGWCLTHKWPLYNDGGAIIGLAGISLDLQSASQTHPAYQRLAAVDEHIRAHFNRRVTLGELTRIAGISVAQLERYCKRVFHLTPRQMIQKVRLEHAHRLLHSELPITEVALQCGYTDHSAFTRQFKASTGFTPRQYRQATQQVWDGACPR
>CP027723.1|AZE84094.1|2995266_2996193_+|4-hydroxyproline-epimerase
MKRLHVIDSHTGGEPTRLIMNGFPTLAGATLADQLDDLRSQHDQWRRACLLEPRGNDVLVGALYCAPVTPGATCGVIFFNNAGYLGMCGHGTIGLVASLHYLGLIAPGVHTLDTPVGPVAATLHADGAVTLRNVPAYRYRHQVAVQVPGHGEVVGDIAWGGNWFFLVSDHGQALQMSNVDALTDYTWAMLKALEAQGIHGEDGALIDHIELFADDTQADSRNFVICPGKAYDRSPCGTGTSAKLACLAADGKLGPDEPWVQASITGSQFLARYEWDGERVRPFITGRAHMTADSILLIDEQDPFAWGI
>CP027723.1|AZE84095.1|2996245_2997193_+|1-pyrroline-4-hydroxy-2-carboxylate-deaminase
MSDNIFTGCMPALMTPCTAARKPDFDALVAKGRELIDIGMSAVVYCGSMGDWPLLTEAERQEGVARLVAAGVPTIVGTGAVNSREAVSHAAHAAKVGAHGLMVIPRVLSRGASATAQKAHFAAILEAAPNLPAVIYNSPYYGFATRAELFFALRREHPNLIGFKEFGGAADLRYAAENITSQDDDVTLMVGVDTQVVHGFVNCNATGAITGIGNALPREVLQLVALSKQAARGDAKARRQARELEAALAVLSSFDEGCDLVLYYKHLMVLNGDQGYALHFNETDGLSAAQRRYAEQQYALFRQWYANWSAEQNVA
>CP027723.1|AZE84096.1|2997249_2998497_+|D-amino-acid-dehydrogenase-family-protein-in-hydroxy-L-proline-catabolic-cluster
MANPHSADIVVVGAGIIGVACALQLARQGRQVLVIDAQPPGMGASYGNAGHLATEQVFPIADLSILKRLPAMLLDPMGPLRLDWTYLPRALPWFMRLLLNLRPTRYRRTVAGIRALNEASLGAWQQLLRSIGQPQLLREEGSLLVYEHAESRAALDALQQRMQQQGVPVAFWSAEAVHRAAPQLSEAIRGGLFFPATGHFLDPYRAVVELVNAAKAVGVTFLQRRVVDGRVEGDGVSLMTDKGAVTARQALIACGAHSAHLTAALTGKRVPLDTERGYHLMLPHEHQRLPFAVTSLERKFIMTPMADGLRLAGTVEFAGLERPANMQRAWQLHRLSDGLFRQPLNAADATPWMGFRPSLPDSLPIIDRVCDGKVLLAFGHQHLGLTQAAVTAEKIAGLAGGEDVPGLQAYRLERF
>CP027723.1|AZE84097.1|2998507_2999518_-|Transcriptional-regulator,-AraC-family
MERRQFSGGMKGKNLRYLNDNSQQTAAVTRIGFLLLEHFSLPAFTQTLDTLVTANLLRPELFATRTFGWDEREIISDLGLVIRPDARLEPAVLQELDLLVICGGFRTELKASEDFIHILRAAAEQGIGLAGLWNGSWFLGRAGLLQGYRCAIHPEHRPALAEVSKAAQVTSEPYVIDRDRLTASSPSGAFHMALDWIKSLHGKALVEGIEDILAFEESRYRRIKPTENVCVSAPLREVLKLMDANLEEPLELDQLAVYAGRSRRQLERLFKEQLGTTPQRYYMELRVTEARRLLQHTELSQVDVLVACGFVSPSHFSKCYSAYFGYRPSKEKRLVK
>CP027723.1|AZE84098.1|2999713_2999845_+|hypothetical-protein
MAPSDIPVVPLPFGGLMTKMAIFLFGFLVLTIGIGLLATISPV
>CP027723.1|AZE84099.1|2999852_3000461_-|Transporter,-LysE-family
MFMSTSLLSAFVLFAFVSSITPGPNNTMLLASGVNFGFRRSMPHALGISIGFMVLVICVGLGLGEVFKLFPWAYTLLRYVGAAYLLYLAWKIANAGGMADSDDEQGKPMTFLGAAAFQWVNPKAWIMALGAITNYTPAEGYVTNVLVIALVFAVVNLPSVCVWVGCGSGLRSVLREPRWLRAFNWTMAGLLVLSLYPMLVVG
>CP027723.1|AZE84100.1|3000696_3000945_+|hypothetical-protein
MIDDLGGPRTAQQELFYDLEDASAVIGWSVVELKAMAATGNAGNQAALLIKVCELLAVQQKRLEDYANEVKEQRINRSEAAG
>CP027723.1|AZE84101.1|3001389_3001587_-|hypothetical-protein
MHINENAPGNLSQQDVTRNTDNETGHDPKRDEDNIPLPPDDEAPLEEDMSDVDAADSVASEHPDN
>CP027723.1|AZE84102.1|3002069_3002186_-|hypothetical-protein
MPMRNIFEIKGLRAKANKYIMAPIERNEALKTLMYSMG

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Crispr_ID: CP027723_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027723_5

3155743-3155847

Orphan

Consensus_repeat	Method
TTGCCCCCGATGGCGGCCTCAGGGCCGACCAGGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027723_5

>merge|CP027723|5|3155743-3155847|CRISPRCasFinder
TTGCCCCCGATGGCGGCCTCAGGGCCGACCAGGATTTTGTGTCGATCCCGGCCCAAATGTGGGAGGGGGCTTGCCCCCGATGGCGGCCTCAGGGCCGACCAGGAT

>CP027723|5|5|3155743-3155847|CRISPRCasFinder
TTGCCCCCGATGGCGGCCTCAGGGCCGACCAGGAT	TTTGTGTCGATCCCGGCCCAAATGTGGGAGGGGGC
TTGCCCCCGATGGCGGCCTCAGGGCCGACCAGGAT

Protein	Signature genes	Signature genes Name	Protein_function
CP027723.1\|AZE84235.1\|3153605_3154349_+\|Fap-system-putative-outer-membrane-protein	unknown	unknown	unknown
CP027723.1\|AZE84230.1\|3149722_3150718_+\|Putative-transmembrane-sensor	unknown	unknown	gnl\|CDD\|226235
CP027723.1\|AZE84227.1\|3142943_3143975_-\|Delta-1-piperideine-2-carboxylate-reductase	unknown	unknown	gnl\|CDD\|376860
CP027723.1\|AZE84246.1\|3166930_3167422_-\|Acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP027723.1\|AZE84229.1\|3149304_3149574_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379323
CP027723.1\|AZE84242.1\|3161829_3162006_+\|hypothetical-protein	unknown	unknown	unknown
CP027723.1\|AZE84239.1\|3158245_3159070_-\|Hydrolase,-HAD-superfamily	unknown	unknown	gnl\|CDD\|369792
CP027723.1\|AZE84236.1\|3154398_3155691_+\|TolA-like-membrane-protein	unknown	unknown	unknown
CP027723.1\|AZE84231.1\|3151018_3151468_+\|Fap	unknown	unknown	unknown
CP027723.1\|AZE84228.1\|3144145_3149284_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|199913
CP027723.1\|AZE84245.1\|3166412_3166625_+\|hypothetical-protein	unknown	unknown	unknown
CP027723.1\|AZE84240.1\|3159066_3160590_-\|Glucose-6-phosphate-1-dehydrogenase	unknown	unknown	gnl\|CDD\|237233
CP027723.1\|AZE84232.1\|3151467_3152019_+\|Fap-amyloid-fibril-minor-component	unknown	unknown	unknown
CP027723.1\|AZE84234.1\|3152887_3153568_+\|Bacteriocin-resistance-protein	unknown	unknown	gnl\|CDD\|239103
CP027723.1\|AZE84238.1\|3157931_3158192_+\|hypothetical-protein	unknown	unknown	unknown
CP027723.1\|AZE84244.1\|3164031_3166269_+\|Outer-membrane-receptor-for-ferric-coprogen-and-ferric-rhodotorulic-acid	unknown	unknown	gnl\|CDD\|227114
CP027723.1\|AZE84243.1\|3162166_3163903_+\|Phosphoethanolamine-transferase-EptC	unknown	unknown	gnl\|CDD\|333729
CP027723.1\|AZE84237.1\|3156277_3157603_-\|sigma-54-dependent-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
CP027723.1\|AZE84233.1\|3152088_3152826_+\|filamentous-hemagglutinin	unknown	unknown	unknown
CP027723.1\|AZE84241.1\|3160586_3161570_-\|6-phosphogluconate-dehydrogenase,-decarboxylating	unknown	unknown	gnl\|CDD\|236582

Protein	Function_ID	Function_description	E-value
CP027723.1\|AZE84240.1\|3159066_3160590_-\|Glucose-6-phosphate-1-dehydrogenase	gnl\|CDD\|237233	PRK12853, PRK12853, glucose-6-phosphate dehydrogenase.	0
CP027723.1\|AZE84230.1\|3149722_3150718_+\|Putative-transmembrane-sensor	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	2.92105e-71
CP027723.1\|AZE84227.1\|3142943_3143975_-\|Delta-1-piperideine-2-carboxylate-reductase	gnl\|CDD\|376860	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This family consists of bacterial and archaeal Malate/L-lactate dehydrogenase. L-lactate dehydrogenase, EC:1.1.1.27, catalyzes the reaction (S)-lactate + NAD(+) <=> pyruvate + NADH. Malate dehydrogenase, EC:1.1.1.37 and EC:1.1.1.82, catalyzes the reactions: (S)-malate + NAD(+) <=> oxaloacetate + NADH, and (S)-malate + NADP(+) <=> oxaloacetate + NADPH respectively.	3.98715e-131
CP027723.1\|AZE84228.1\|3144145_3149284_+\|hypothetical-protein	gnl\|CDD\|199913	cd11007, M35_like_1, Peptidase M35-like domain of uncharacterized proteins. This family contains proteins similar to the M35 Zn2+-metallopeptidases, also known as the deuterolysin family, presumably these are bacterial metalloendopeptidases that have yet to be characterized. Typically, members of this family of extracellular peptidases contain a unique zinc-binding motif (the aspzincin motif), defined by the HExxH + D motif where an aspartic acid is the third zinc ligand; however, members of this family do not contain the GTXDXXYG motif C-terminal to the His zinc ligands that is typical for the M35 proteases. Deuterolysins are highly active towards basic nuclear proteins such as histones and protamines, with a preference for a Lys or Arg residue in the P1' subsite. MEPs specifically cleave peptidyl-lysine bonds (-X-Lys-) in proteins and peptides. Many members of the M35 peptidases display unusual thermostabilities.	3.72215e-09
CP027723.1\|AZE84229.1\|3149304_3149574_-\|hypothetical-protein	gnl\|CDD\|379323	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain. This region is likely to have a protease inhibitory function (personal obs:C Yeats). The name is derived from Peptidase & Bacillus subtilis YPEB.	1.1122e-10
CP027723.1\|AZE84246.1\|3166930_3167422_-\|Acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.28086e-16
CP027723.1\|AZE84239.1\|3158245_3159070_-\|Hydrolase,-HAD-superfamily	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	5.92344e-68
CP027723.1\|AZE84234.1\|3152887_3153568_+\|Bacteriocin-resistance-protein	gnl\|CDD\|239103	cd02423, Peptidase_C39G, A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are lacking the nucleotide-binding transporter signature.	1.00545e-56
CP027723.1\|AZE84244.1\|3164031_3166269_+\|Outer-membrane-receptor-for-ferric-coprogen-and-ferric-rhodotorulic-acid	gnl\|CDD\|227114	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism].	0
CP027723.1\|AZE84243.1\|3162166_3163903_+\|Phosphoethanolamine-transferase-EptC	gnl\|CDD\|333729	NF012179, CptA, phosphoethanolamine transferase CptA.	0
CP027723.1\|AZE84237.1\|3156277_3157603_-\|sigma-54-dependent-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	3.01647e-159
CP027723.1\|AZE84241.1\|3160586_3161570_-\|6-phosphogluconate-dehydrogenase,-decarboxylating	gnl\|CDD\|236582	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase.	0

>CP027723.1|AZE84236.1|3154398_3155691_+|TolA-like-membrane-protein
MHRSLSLRAVVCLSTLLPASVLYAAPDADIETLKQELLELKQRYDVQQKALAVLEQRVRQVEDQPATPAPRRLAKSPADFKKGATTVAGAAASGGAGGGGSSYGQSLKDDSAPAQSVSNLYNEASGFFGNGKFSVETGITYARYDARQLTLNGFLALDSIFLGNINLDRIKSDSWTLDLTGRYNVDNRWQFDLNVPVVYRESTYQSGGAGNDATATSEASVTRDPTIGDVNFGVAYKFLDETPNLPDAVVSVRVKAPTGKEPFGIKLVKQPSNDNLYLPESLPTGNGVWSVTPGISLVKTFDPAVLFGSLSYTHNFEDSFDDISSEVNQKVGGKVRLGDSFQFGVGVAFALNEKMSMSFSVSDLVQRKSKLKPNGGDWQSVVSSDANAGYFNVGMTIAASDNLTIVPNLAIGMTDDAPDFTFSLKFPYYF
>CP027723.1|AZE84235.1|3153605_3154349_+|Fap-system-putative-outer-membrane-protein
MNTSRWLTVVCLAAAMPAYASSGFKPIELNDAQMAELRGRYVMPGRIISFGIVMSSTWTNAVGDSITGKASMQLDKTTITPQFYVQTTGAAGSGTPTAGSGNVIGGAGLANGQGVTQSVRAAGDGNTAYNHVGINVTQDGFAPANAVQSGQVLVAGGTVTGDSQAGHVSVSANHGGLQMAIQANHNQGNSLQQIGGGNVLQGTVLTGDTNVVSNMTQLNVVMNPNGINSGALNCNLDQLKGLRTLGY
>CP027723.1|AZE84234.1|3152887_3153568_+|Bacteriocin-resistance-protein
MRLATLTLLMLLTGPAWAGTMAISAMPGGAVIFKKVESIRERRFANLVEQKTDFSCGAAALATILRQAYWLDVDEDHIIKGMLVTADQDLVRTQGFSMLDMKRYLESIGMRARGYKIAPDTLVTVKIPVVVLLEIRGYKHFVVMQRADKDWVYVGDPVLGHKRYSRDDFVKGWNGIVFAVLGEGYDKANVLLDPPAPLTAKNQLNEFRPVGDAELMDFGFIQSDFF
>CP027723.1|AZE84233.1|3152088_3152826_+|filamentous-hemagglutinin
MKPQMALKPLVFALAALMAAAAQAGGGWHPAPQPTGTVAAVVTDVQKSQHNKFEDSNTENNASADNSVTGNSGNTGVNVQAGSANQADNAGAISSAKGDFASVFAVIDVDQASTNNNFINKGTQNNASLDSSVNGNSGNVGYNGQAGQGNQGKNNLAITTADGKNIAAASNTEQNSLNNSYLNTAVSSHGYGKPQYVSNNASLDNSINRNSGNVGVNLQSGAGNQGSNSLSIGQGCSSCASGVRF
>CP027723.1|AZE84232.1|3151467_3152019_+|Fap-amyloid-fibril-minor-component
MRRLLLIFALLGSASSPADDTAMIDSSGQQYQGVLSINQAAGNRQQMSNSRAIVLGGQATTVNIQKLDGNVDPSLNAKAAILGTSFTSGNGVLGINQSAGANNQSINAVRISVNPGPQSIDDSVLLQQNTTTLATDSGPTSTTGSRQVVTSDQAFTGSRGVIQVNQSAGVGNRVANTLGITIK
>CP027723.1|AZE84231.1|3151018_3151468_+|Fap
MNTFTHASINALLLSCVLSAGACLPSHAGDGVIVTGRTVQGHMYGRTSLPDPYPNTANANPSKEVISAISGELSDRDIGGISSGSSLARSVQPNGNLSGLGATPAGMSTLGSGAAAGHGAGSAMGGQISDSIQRGMAPLNNLGSMLGGK
>CP027723.1|AZE84230.1|3149722_3150718_+|Putative-transmembrane-sensor
MSEQSLSEAEYDAITDAAAHWCMRLHAEDCSAAERQAFEKWHDAHPLHAFEYAAMLEIWDVADHLPRNTPAPVLLPFKPRKRWRTYAAAAAICLGALPLAAFTGWEAGWLPSAYKHYEATNGLRKVTLGDGSQVELNLGTELVYSDYKDRRQVSLKKGEAFFKVAHDGDHPFIVRAGEGQVRVTGTQFNVWTYADQVRVMLLEGSVQIASDSVHGSVPLTPGMQASYQRGDATPHVAAIQPDDTALAWRTGKLVLDNLALADALPLINRYLDKPAMLADAGTGSIRIGGIYNLSEVNNLIPSLPRVLPVYLTQNQDGNPVLNSIPRKTPKG
>CP027723.1|AZE84229.1|3149304_3149574_-|hypothetical-protein
MLKKTLAALCATTALLSAGAALADKPGAGWITIEKAIEVAKTKAGYIEVYAAEADDNGYWEVKGRKSDGTVYEARIDGASGNILRDQKD
>CP027723.1|AZE84228.1|3144145_3149284_+|hypothetical-protein
MTRVTPPYFFDEFLLPVNRSVLSERERALGLTVKDLEWLHGVYYASDASRQDTRLQSHPMRVETLLINRVGHAAIPLAGAFVMSPTPDGAKALLYTPYGGIQVFDSHAALLGAVGEALADAVQRVDLLSFLSIAQRNSLSAVTDLTLTTSPVPGPVMEDQERTLQACQRANVRSMLEHLQKTPTLSDMLDTLLGIMAHPYFPGLDQRKTRVNCFIQSPTDTDRRWIDSLALREAFLQFYVKHAWPLGQTREFINPKHVTTDFNQTRLQQDSERWEALIEQTSGTLSKLLDSLLQTYWNEDIDSGTSRLDLFAQVLADKFRLDVLLKRQTGILSADESHMLQALCLSDQDARSAYAADLSVEKVRIHAPYQHYVELASTLMLHQSHAYLYTQSRGVQVLADLDDLKDTLLTMLTAAGHEDELLNFLSLDERDTFIGLDQINIAARPVTGHVFTGMIEDIIAKQTSNMSHALGLYRSSAGQLDLEALLDYALDIRAMLDSRLADLDTDGRWTIHPVSSGNGRPSTVQAERAKLHQQRLQTAEEGLQIERLKHPTLRSMATLALNTELQTQRLDLKADEVYVNTYASRAEQLEERAPVSSLSMVEHFIERLRPESQPLAVSSRTGFYQNRDRRVALKLNNMTLKTFNNVIERVLKVFAGHELRDLPRLFLDNNRDKHAHSMLLGLRSEAELRLLGKTLPAGSHAILDTVLRTDSLVRLTRHGINGFLPDAYALALQQGTSDAHLPLANLFVLTERGGLDPRHSGQAILWTPRRGHEVFPSISALREALAQRLAHPVKRLTLLENLRLSHRAPHQVYRLAPLQRIDDNVLDNRLKAHGDNVMDAVDHLLAMDLPARAVQDRLDAILETPAPTNLARAKALADAMITQQLLPVWLAMAPAKEQIYHAELLEQYRNSAPEEEDYLQGVPSLREHTFCALRKLLQARFPEHTINPDDVLIPMHQALNIHEFSLTDFALRHWPDLNNQVIRPRSRTATLLPDALDANAVIQMVRQLDLKSVYQERVRTELDTATQAARKRRRRFCRQLPWQVLHYAHEQHLQERLSTEALRLVQQAFDMPDALARTALVGASTLIRPVELVATVGATAAKVLGMYLIGGEHDHPGPVVLYAPYSENHVLKQYDSEQALLEEVQRPGELQDWVIRHLEDPHQAVYRHLLQNNPHRPSDISLASTAVTGNLLHYLFSENVLILLKMLACQFEEGAKLLWDKAVGLFGKGIPTAVHFMAGKLAYPLVVWRAYKLVKRSMEALQLHQWKAAMKDFILAVVQMAALYSELDGSETPPPGDADVVDLPQGELPMAIVPGLHDVTATSRTRLQRFEDHDIALESLALATSTQVYEDKANAKAYVPLAGKVYPVTKTKEHWRLGNDEQQGPYVGRNSQGQWVLDLSLHKPRFGQAWTRQKTQRAQRREINVEAHGIKAIAAVSRWKAQAIDEALNVATYYAVNCKRNIQHFAQLLTPDSRVGLFLCDLFGTINLTPDQVRKIETLIDGILDELSDPTLIGPDSMRLVSGESVKDPTNDYAMVLVDDSERKVFLFELFFDPNLTEYANILSAPFDMFAHARASTLIHELTHLRFKTEDIAYLRSMEPFRDLIDTARPGAQAVRTRQDDLQTTALSTLTPARMLFKTWDDISNTWEDYGVFTTTHFLKRKVLGITGARTLDEARQIFMSNIDKRIDVILTNADSVTYLITHLGRMLDVGA
>CP027723.1|AZE84227.1|3142943_3143975_-|Delta-1-piperideine-2-carboxylate-reductase
MSAQSPAGATAFISFTELTGLLQQIFVRHGTSPEVAAILAQNCASAERDGAHSHGIFRIPGYLSTLASGWVDGAAVPTVSDVASGFVRVDAGNGFAQPALAAARALLVSKARSAGIALLAIHNSHHFAALWPDVEPFAEEGLVALSVVNSMTCVVPHGADRPLFGTNPIAFAAPQADGAPIVFDLATSAIAHGDVQIAARKGERLPPGMGVDSLGQPTQDPKAILEGGALLPFGGHKGSALSMMVELLAAALTGGNFSFEFNWADHPGARTPWTGQLLIVIDPSKTAGQSFAERSHELVRQMHAAGLRRLPGDRRHRARAKALETGIELPVQELNQLQEWAGD
>CP027723.1|AZE84237.1|3156277_3157603_-|sigma-54-dependent-transcriptional-regulator
MLVTPAQRRLLVVDPCEDCHGLLPGLRTVGWEVDSCALEAVGERSCDVGLLRLQPCHLERPEAVKELIGRSGTEWIAVLSQDVLRLQNVGDFVCEWFFDFHTLPFDVSRVQVTLGRAFGMARLRGKGHTPVGGPGHELLGDSRPIRELRKLLAKLAPTESPVLIRGDSGTGKELVAKTLHRQSQRHARPFVAINCGAIPEHLIQSELFGHEKGAFTGAHQRKVGRIEAAHGGTLFLDEIGDLPMELQANLLRFLQEKQIERVGGSQPIAVDVRVLAATHVDLEAAVEKGTFREDLYYRLNVLQVVTAPLRERHGDVAMLANHFSRFYSQETGRRPRSFSEAALVAMGQHPWPGNVRELANRVRRGLVLAEGRQIEAVDLGLQGAQAVSPSMATLEDYKHRAERQALCDVLDRHSDNLSVAARVLGVSRPTFYRLLHKHQIR
>CP027723.1|AZE84238.1|3157931_3158192_+|hypothetical-protein
MNAPLRINEALLIADRAFQPFQCVAWHDGHGALSLSVIDRTNTRIGSQQLSSTTYTDPAQLEDLLLQARAELDKSGYQLQQWAMPK
>CP027723.1|AZE84239.1|3158245_3159070_-|Hydrolase,-HAD-superfamily
MSDAAIHPIRFILSDVDGTLLHPDHSLSQRTADAVRALREAGVLFSLASGRPPKAMMHLIETFGIDVPVAGFNGGTLINPDGSILVAHHLPAEAALVTLALFSAEPDVEVWVFADGDWLRRDPPGPMAQREADGLGYGPIVVESFEPYLDRVDKIVAASNNTQLLVELEARLHPKVQGLAQVSRSQPVYLDVTAMLANKGEALKTLAAHLGVPLAQTAAIGDGGNDPAMFHVAGLSIAMGQAEEPVKRQASVVTGSNVEDGAAEAFERFILNAR
>CP027723.1|AZE84240.1|3159066_3160590_-|Glucose-6-phosphate-1-dehydrogenase
MTANGKKPKAEPAPPTTLFLFGAHGDLVKRLLMPALYNLSRDGLLGDGLRIVGVDHNAISDADFAKKLEDFIRTEAAGKVRGNAENALDPQLWAQLAKGISYVEGDFLDDSTYAAIAQKIADSGTANAVFYLATAPRFFSDVVQRLGSAGLLNETDEGFRRVVIEKPFGSDLATAEALNACLLKVMSEKQIYRIDHYLGKETVQNILISRFSNVLFEAFWNNHYIDHVQITAAETVGVETRGNFFEKTGTLRDMVPNHLFQLLAMVAMEPPAAFGADAVRGEKAKVVGAIRPWSLEDARANSVRGQYTAGEIAGKQLPGYREEANVAPDSSTETFVALKVMIDNWRWVGVPFYLRTGKRMSIRDTEIVICFKQAPYAQFRDTDVDELKPTYLKIQIQPNEGMWFDLLAKKPGPTLEMANIELGFDYKDFFEMQPSTGYETLIYDCMTGDQTLFQRADNIENGWRAVQPFLDAWKEDDGIQSYKAGEDGPAAADALLARDGRAWHSLG
>CP027723.1|AZE84241.1|3160586_3161570_-|6-phosphogluconate-dehydrogenase,-decarboxylating
MQLGIIGLGRMGGNIARRLMLNGHTTVVYDRNEAFVNGLSEEGATGVADLKALVAGLQKPRAVWVMLPAGAPTEDTINELSVLLESGDVIIDGGNTNYKDDVRRGKALAEKGLHYVDVGTSGGVWGLERGYCMMIGGDVETVQRLDPIFKSLAPGIGNIPRTKDRSASADPRAEQGYIHAGPAGSGHFVKMIHNGIEYGMMQAFAEGFDILKTKNSDNLPEDQRFDLNVADIAEVWRRGSVVSSWLLDLTADALATDPKLDGYSGSVADSGEGRWTIEAAMEQAVPVPVLSTSLFARFRSRQQSTYGDKMLSAMRFGFGGHVETSKK
>CP027723.1|AZE84242.1|3161829_3162006_+|hypothetical-protein
MSTAQMTRPPQTLYVSIRRDELRQLKDERDQLQQEVLRLRSHLQAQLELPSGAKPALC
>CP027723.1|AZE84243.1|3162166_3163903_+|Phosphoethanolamine-transferase-EptC
MFKRSTTTAKGFDWAGLGWLFLFFWYFSGITQLLIQLTGTSGFSGFRQAFFMSALWLAPMLLFPRQTRVLAAVIGVVLWACSMASLGYFFIYQQEFSQSVIFIMFESNISEAGEYATQYFAWWIVLAFLAHTAFAVFLWTRLRPVYLPRGQSIVAAIAIVLAIVGYPLVKQIATSDTMEQAIDRFETRIEPAVPWQMIVAYRRYTEQLDNMQGMLTSASQIPPLKNLKDSMAGQPSTLVLVIGESTNRQRMSLYGYPRNTTPELDKLRDQLAVFDNVITPRPYTIEALQQVLTFADEENPDLYLKTPSIVSVMKQAGYKTFWITNQQTMTKRNTMLTTFSEQADEQVYLNNNRNQNARQYDGDVLAPFSKALADTAERKFIVVHLLGTHMSYQYRYPQTFDKFTDRQGVPPGVSDAQLPTYNSYDNAVLYNDFVVSSLIKDYAKTDPNGFLLYLSDHGEDVFDSAGHDTLGRNEGKPTAPMYTIPFMAYASPKWRESHDWSFAGDLQRPYSSSQLIHTWADLAGLSFDELDRSKSLVSDSFKPRPLLIGNPYETKQKALIDFSLIKPKKADSTDVVVK
>CP027723.1|AZE84244.1|3164031_3166269_+|Outer-membrane-receptor-for-ferric-coprogen-and-ferric-rhodotorulic-acid
MFAPFTRSISVTLGLFSLALSPELLAETDPEQAPARALELGATRVTAEGLGATTEHTGAYTTGSMSTATRLNLSVKETPQSISVITRQQMDDFNLNTLTDVLRQTTGINVQHNDSDRVSYTSRGYGINNFQIDGMLNTFGYMKSDADTIIYDRIEVVRGATGLTTGAGDPSATVNMVRKRPTAQWQAKTGISGATHDNYYSYLDVGGPLAFDGRLRGRSVLAYRDSKSFRDNYALQRAVGYGILEGDLSDDTVLAVGFDYQDKQVQGTSWGTVPYWNSQGGKAGLSRSTNMAAHWSSWPLTDKTTFATLDHRLGGDWHLKAAYTHRQSDTDGKVYYGGAGFPNADRSGMTAWASHMRGTSRMEAIDLNLAGSYALLGREHQLMMGYGEAAQRDSSPFMRSNLPKGYYTIEDWKHMGGIGKFTDDVTDLKGEHSKKQQKAGYLATRLSLTDRLHAVLGSRYGSWELESATPAYDANDQLTASGKTGQTHNDMWTPYAGLLYDITPQYTVYASYTDIFKPQSARDVNKKYLEPVVGSNYEVGLKGSVLNERLNLAAAYFWSTQDNVAELDDSVERNPTTGEEYYKSGGKGNKVKGFELEAAGEIAPDWNLTAGYTYTHSVNGTGQRNNTGQPLNLLKLSSAYRLPGAWRNLTVGGAVTWQSDIFDFGNRPTGQRDDQGDPITTRAKIEQQGYTVVNLMSRYQFDEQLTASINVNNLFDKKYYERVGFYNGVYWGDPRSITLALDWRL
>CP027723.1|AZE84245.1|3166412_3166625_+|hypothetical-protein
MKLSTLMLASLMTLTSAAAFAEGGSERSKEFYNNFSFIQETTHGKAEQQVVSADGKSVKATTAEPAQPNS
>CP027723.1|AZE84246.1|3166930_3167422_-|Acetyltransferase
MDTPDILVLQASYTNVVHAEAIGSLLNHYAEDPMGGGHSLPADLLQQLPAELAKRPHAFSVLAFVGGVPAGLVNCFEGFSTFACRPLVNVHDVVVAQQFRGLGLSQKMLQKVEEIARQRGCCKITLEVLEGNALAQSAYRKFGFDDSVFDPAHGRMLFWNKAL

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Crispr_ID: CP027723_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027723_7

3627610-3627705

Orphan

Consensus_repeat	Method
ATCGGGGGCAAGCCCCCTCCCACATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027723_7

>merge|CP027723|7|3627610-3627705|CRISPRCasFinder
ATCGGGGGCAAGCCCCCTCCCACATTGGACCGAGGCGTATCAGGCAGGTAGCTGTAGGCTGACAGGCCGATATCGGGGCAAGCCCCCTCCCACATT

>CP027723|7|7|3627610-3627705|CRISPRCasFinder
ATCGGGGGCAAGCCCCCTCCCACATT	GGACCGAGGCGTATCAGGCAGGTAGCTGTAGGCTGACAGGCCGA
TATCGGGGCAAGCCCCCTCCCACATT

Protein	Signature genes	Signature genes Name	Protein_function
CP027723.1\|AZE84629.1\|3619185_3621534_-\|Sigma-fimbriae-usher-protein	unknown	unknown	gnl\|CDD\|225729
CP027723.1\|AZE84641.1\|3631580_3632174_+\|Cytochrome-b561	unknown	unknown	gnl\|CDD\|225580
CP027723.1\|AZE84633.1\|3623471_3624008_-\|Sigma-fimbriae-uncharacterized-subunit	unknown	unknown	gnl\|CDD\|368347
CP027723.1\|AZE84630.1\|3621605_3622394_-\|Sigma-fimbriae-chaperone-protein	unknown	unknown	gnl\|CDD\|225663
CP027723.1\|AZE84628.1\|3618172_3619162_-\|Sigma-fimbriae-tip-adhesin	unknown	unknown	gnl\|CDD\|368347
CP027723.1\|AZE84646.1\|3638098_3639106_+\|Pyruvate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236500
CP027723.1\|AZE84639.1\|3629505_3630615_+\|2-aminoethylphosphonate:pyruvate-aminotransferase	unknown	unknown	gnl\|CDD\|184076
CP027723.1\|AZE84635.1\|3624560_3625811_+\|ATPase	unknown	unknown	gnl\|CDD\|281902
CP027723.1\|AZE84642.1\|3632396_3633287_-\|pyridoxal-phosphate-dependent-deaminase,-putative	unknown	unknown	gnl\|CDD\|225313
CP027723.1\|AZE84643.1\|3633345_3635385_-\|2,4-dienoyl-CoA-reductase-(NADPH)	unknown	unknown	gnl\|CDD\|239240
CP027723.1\|AZE84632.1\|3622910_3623453_-\|Sigma-fimbriae-uncharacterized-subunit	unknown	unknown	gnl\|CDD\|227717
CP027723.1\|AZE84637.1\|3627729_3628437_-\|YebC-like-protein	unknown	unknown	gnl\|CDD\|237084
CP027723.1\|AZE84627.1\|3617438_3618176_+\|Transmembrane-regulator-protein-PrtR	unknown	unknown	gnl\|CDD\|227949
CP027723.1\|AZE84636.1\|3625848_3627141_+\|Serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|275380
CP027723.1\|AZE84634.1\|3624001_3624529_-\|Sigma-fimbriae-uncharacterized-subunit	unknown	unknown	gnl\|CDD\|368347
CP027723.1\|AZE84638.1\|3628536_3629394_-\|Phosphonate-uptake-and-metabolism-regulator,-LysR-family	unknown	unknown	gnl\|CDD\|132382
CP027723.1\|AZE84631.1\|3622419_3622908_-\|Sigma-fimbriae-uncharacterized-subunit	unknown	unknown	gnl\|CDD\|368347
CP027723.1\|AZE84645.1\|3636731_3637766_+\|Transcriptional-regulator,-AraC-family	unknown	unknown	gnl\|CDD\|378890
CP027723.1\|AZE84644.1\|3635596_3636727_+\|Hydrolase,-carbon-nitrogen-family	unknown	unknown	gnl\|CDD\|143587
CP027723.1\|AZE84640.1\|3630641_3631469_+\|Phosphonoacetaldehyde-hydrolase	unknown	unknown	gnl\|CDD\|184075

Protein	Function_ID	Function_description	E-value
CP027723.1\|AZE84629.1\|3619185_3621534_-\|Sigma-fimbriae-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	2.86547e-144
CP027723.1\|AZE84641.1\|3631580_3632174_+\|Cytochrome-b561	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	9.12429e-52
CP027723.1\|AZE84633.1\|3623471_3624008_-\|Sigma-fimbriae-uncharacterized-subunit	gnl\|CDD\|368347	pfam05229, SCPU, Spore Coat Protein U domain. This domain is found in a bacterial family of spore coat proteins, as well as a family of secreted pili proteins involved in motility and biofilm formation. This family is distantly related to fimbrial proteins.	1.39211e-13
CP027723.1\|AZE84630.1\|3621605_3622394_-\|Sigma-fimbriae-chaperone-protein	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	1.15124e-42
CP027723.1\|AZE84628.1\|3618172_3619162_-\|Sigma-fimbriae-tip-adhesin	gnl\|CDD\|368347	pfam05229, SCPU, Spore Coat Protein U domain. This domain is found in a bacterial family of spore coat proteins, as well as a family of secreted pili proteins involved in motility and biofilm formation. This family is distantly related to fimbrial proteins.	1.77971e-19
CP027723.1\|AZE84646.1\|3638098_3639106_+\|Pyruvate-dehydrogenase-E1-component	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	7.27583e-59
CP027723.1\|AZE84639.1\|3629505_3630615_+\|2-aminoethylphosphonate:pyruvate-aminotransferase	gnl\|CDD\|184076	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional.	0
CP027723.1\|AZE84635.1\|3624560_3625811_+\|ATPase	gnl\|CDD\|281902	pfam03969, AFG1_ATPase, AFG1-like ATPase. This P-loop motif-containing family of proteins includes AFG1, LACE1 and ZapE. ATPase family gene 1 (AFG1) is a 377 amino acid yeast protein with an ATPase motif typical of the family. LACE1, the mammalian homolog of AFG1, is a mitochondrial integral membrane protein that is essential for maintenance of fused mitochondrial reticulum and lamellar cristae morphology. It has also been demonstrated that LACE1 mediates degradation of nuclear-encoded complex IV subunits COX4 (cytochrome c oxidase 4), COX5A and COX6A, and is required for normal activity of complexes III and IV of the respiratory chain. ZapE is a cell division protein found in Gram-negative bacteria. The bacterial cell division process relies on the assembly, positioning, and constriction of FtsZ ring (the so-called Z-ring), a ring-like network that marks the future site of the septum of bacterial cell division. ZapE is a Z-ring associated protein required for cell division under low-oxygen conditions. It is an ATPase that appears at the constricting Z-ring late in cell division. It reduces the stability of FtsZ polymers in the presence of ATP in vitro.	3.57517e-96
CP027723.1\|AZE84642.1\|3632396_3633287_-\|pyridoxal-phosphate-dependent-deaminase,-putative	gnl\|CDD\|225313	COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism].	1.53178e-40
CP027723.1\|AZE84643.1\|3633345_3635385_-\|2,4-dienoyl-CoA-reductase-(NADPH)	gnl\|CDD\|239240	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provides a hydrid ion to the C5 atom of substrate, and Tyr and His are proposed to form a catalytic dyad that protonates the C4 atom of the substrate and completes the reaction.	0
CP027723.1\|AZE84632.1\|3622910_3623453_-\|Sigma-fimbriae-uncharacterized-subunit	gnl\|CDD\|227717	COG5430, COG5430, Uncharacterized secreted protein [Function unknown].	4.40265e-11
CP027723.1\|AZE84637.1\|3627729_3628437_-\|YebC-like-protein	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	3.66991e-107
CP027723.1\|AZE84627.1\|3617438_3618176_+\|Transmembrane-regulator-protein-PrtR	gnl\|CDD\|227949	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription].	2.05086e-25
CP027723.1\|AZE84636.1\|3625848_3627141_+\|Serine/threonine-protein-kinase	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	2.04236e-21
CP027723.1\|AZE84634.1\|3624001_3624529_-\|Sigma-fimbriae-uncharacterized-subunit	gnl\|CDD\|368347	pfam05229, SCPU, Spore Coat Protein U domain. This domain is found in a bacterial family of spore coat proteins, as well as a family of secreted pili proteins involved in motility and biofilm formation. This family is distantly related to fimbrial proteins.	6.19533e-25
CP027723.1\|AZE84638.1\|3628536_3629394_-\|Phosphonate-uptake-and-metabolism-regulator,-LysR-family	gnl\|CDD\|132382	TIGR03339, phn_lysR, aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466). [Regulatory functions, DNA interactions].	3.7534e-110
CP027723.1\|AZE84631.1\|3622419_3622908_-\|Sigma-fimbriae-uncharacterized-subunit	gnl\|CDD\|368347	pfam05229, SCPU, Spore Coat Protein U domain. This domain is found in a bacterial family of spore coat proteins, as well as a family of secreted pili proteins involved in motility and biofilm formation. This family is distantly related to fimbrial proteins.	3.43641e-25
CP027723.1\|AZE84645.1\|3636731_3637766_+\|Transcriptional-regulator,-AraC-family	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.71535e-38
CP027723.1\|AZE84644.1\|3635596_3636727_+\|Hydrolase,-carbon-nitrogen-family	gnl\|CDD\|143587	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy.	5.00107e-19
CP027723.1\|AZE84640.1\|3630641_3631469_+\|Phosphonoacetaldehyde-hydrolase	gnl\|CDD\|184075	PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional.	7.07647e-170

>CP027723.1|AZE84636.1|3625848_3627141_+|Serine/threonine-protein-kinase
MTNTLAQLKAGQLAGATRLDLACGLTEFPREIFELADSLEILNLTGNALSSLPDDLHRLRHLRVLFCSDNAFTELPECLGRCAQLSMIGFKANRIHQVPAAALPPQLRWLILTDNCISQLPDELGRRPLLQKLMLAGNQLTQLPPSLAQCENLELIRIASNRLTHLPQWLLSLPSLTWLAYAGNPVEMAVAVTADATPDIPWTDLQLGDVLGEGASGIIRKALWKPQALPVAVKLYKGAITSDGSPLHEMQACIAAGLHPNLIKVEGRVSDHPDDQAALVMDLIDPSYRNLAALPSLASCTRDIYAPDTRFSLDVALRMARGIASVAAHLHRHGITHGDLYGHNILWNAAGDCLLGDFGAASFHATEDTLETKALQRIEVRAFGVLLGELLERVEGAVADELAELQLSCCQPQVLARPNFEEIEVLLSAL
>CP027723.1|AZE84635.1|3624560_3625811_+|ATPase
MYKGSHSGEICQFGQKYPCAVLFKASQYKPVQCSNRARPPKVSDHRTRECCALTVLPLIRRLLGRRHRVANAAPIQAFFHDKAEQQGYILSTGQTQAITALAREAGHLLGGRPTRSLYLHGPAGRGKSWLLDGFFQALPIAEKQRVHFHDFFADLHRGMFQHRAQDDALAVALDERLAGCRVLCFDEFHVHDIGDAMLISRLFKALFQRGVLVLVTSNYAPEGLLPNPLYHQRFKPVIDLIATGMDVLEVSAPEDFRRLPQAHAEQRFSTGRYIWSGSVAQREAFGLPAADCPALPLTVGNRQLQCRRREARSIAFTFNDLCEQLTAVMDYLLLCQDFDHWTIDGLPHLADCPIAVQQRFINLVDVLYDRDKQLILIGAQPLEQALGGKAIDLARTASRLGQLRPCGPQAARDPVS
>CP027723.1|AZE84634.1|3624001_3624529_-|Sigma-fimbriae-uncharacterized-subunit
MKGRTVLAVMGTMLCNTVFAAQVQVVVRIDVQRGCQLVGTTRTAGIEQLGVLDFGSGARLDDPAGPLSAALISQRQPRLECNPDTPYQVRVDGGLHGGVGEVRYLANDAPASKPIPYRIYADAARLIPLPVNVPLSGRVPDSGSVDLPLFGRIEPLKDIPAVGRYSDLLKVTVTW
>CP027723.1|AZE84633.1|3623471_3624008_-|Sigma-fimbriae-uncharacterized-subunit
MVSRYLAVTALLLLAYDAQAAAASGQIQARLVITASCEVNMSVETAPVTPEGGTAMLDFGSQGPTWNDTLGAAVSAGDKTPLLVSCSPSVASSFTVTIDGGTHGDGITRRLSNGSQSIPYQLWADPLGRSAYSIGEQRNFAMTHDAQVPIPVFGSVVANTRALPAGIYTDTLTVTLDW
>CP027723.1|AZE84632.1|3622910_3623453_-|Sigma-fimbriae-uncharacterized-subunit
MHVRVSRLGACALGLAMASSLNAATTVTGQISSSLTLIASCQVNGSGAATGLNFGSLNFGTTNSLFTNADAQLLGGTGTGGALSILCSAGTTPAVKVRAGAHDGASPGGTRALADGAGNFVPYDFYTDSGFSSLLAVDGVITLAASTGVAQTVGLYGRAVGKPGLPAGVYTDTVAVELTF
>CP027723.1|AZE84631.1|3622419_3622908_-|Sigma-fimbriae-uncharacterized-subunit
MWLRVWLACGLALPLPLSAVTSQSLQVSATVTPGCLIVGGGSNYGALTYGSYSALATGTVTAALTGGVTLQCTPGVALSMSVDGGLHSATGRNLQLNSGSARVAYQLFRDAAFSQSLGISQSVSVSYSNANTISLPIYGRVVLPGNQPGGTYSDTLQVQLSW
>CP027723.1|AZE84630.1|3621605_3622394_-|Sigma-fimbriae-chaperone-protein
MRSPSRRLWTAGVVLTALCASGLVQAASSVLIWPIDPVLEADQQASALWLENRGSETANLQVRVFAWSQNGFDEQYQNQRDVIGSPPVARIEPGQKQLVRLTRTREVPPGRELAYRIIIDEIPSALQVPAPPEGKNTAAAIRFQMRYSVPLFAYGAGLWSKDDATRQRDPKGAGQPQLSWKKVNVAGRSYIEVRNQGAVHARLTDASFKQGGQSRPLVEGLLGYVLPGATMRWPIPGDVSGDQPLQVRINGATQLESLAPTR
>CP027723.1|AZE84629.1|3619185_3621534_-|Sigma-fimbriae-usher-protein
MVSRGWARGIWPSVAVVSGLWGAAVAGDLPPPPSSMEAVADAQLFLQLVVNQMDTGRVIAVDQRAGQLFVPASALQEVGMKLPGDPDGSVALDTVPGLHSDYDSNGQRLLLDVPPSWLQEQFIGNRNTYPRTQAMSSFGALLNYDVYFNDTDEGGSYLAAWNEVRLFDNWGTLSNTGQLRQTLSDGVSSSTLNNGYRRYDTTWRFSDDERLLTYEAGDVISGALPWSSSVRLGGVQLSRDFAVRPDLVTYPLPQFAGEAAVPSSVDLFINGYKSESAQLQPGPYTLTNIPFINGAGEAVVVTTDALGRQVSTTVPFYVTSTLLQHGLTDFSVAAGTLRRDYALRDFGYGPGVASGTFRYGYSDNLTLESHAEASSDLTLGGLGGNLRLGNFGVLNTAVSQSRFDSLSGRQLSLGYQYNSARYSLMYQRVERRDAYADLTLVDTPYARLSKRSEQVTLSLNLERFGSLGLGYFDVQAADDSRTRLLNLSWSKPLWRNSSVYLSANREIGDSNWAMQAQLVIPFDLNGSLALSTERGKDGASTHRINYSRAVPSEGGVGYNLGYAQGDTPTYRQADLTWRLQSVQLQAGVYGSSEAQTRWADASGSLVWMGGNTFAANRINDAFVVVSTQGFAGIPVRYENQLVGETDSKGHLLVPWSSAYYRAKYEIDPLNLPPNVQSPNVEQRVSVRRGSGYLLEFPLRRVLAASITLVDSQHQELPLGSLVVHEQSNTQAVVGWDGLVYLENLSAHNTLQVTLGEGRSCQARFDIDEHQQDVPLIGPLVCQ
>CP027723.1|AZE84628.1|3618172_3619162_-|Sigma-fimbriae-tip-adhesin
MRGKGWPFGVGLFGLVLLCSGKALAACSVGVTVPASFGSISSMTVRTAAQASSTTSAGLSCTSSLISLLVSTDHFYATITSPQSGMRGPTGDVIGYTIYGTNSTSYPITRGAQFDFGGAGGIAQIIGLIAGPGPKSVPLYLGSITGSNVAAGVYTETLSIAWNWNYCSGVGLGGICLGRDIGSGTASLTVSMTVTNDCQITAPSISFGSAPVVSGFTAVTGQTITIACTKGSAYTVGLSDGQNAVGVGGRRRMLSGANYLAYDIFKSAGTTRWGSVGAARRASSTAEVNPGNGLGTGSQVYNYNARIYTDQPTPPAGIYVDNVVLDVGF
>CP027723.1|AZE84627.1|3617438_3618176_+|Transmembrane-regulator-protein-PrtR
MISLPPSERDLHAYVDHQLPDSDRRVLETWLASHPEVAAQVHAWQQDAQLLRASLSGALQQPDNPALDPALIRQRIKHQSRRHLATAALLLIAVSLGGLGGWHAREATQPALLPMADAMQAYRLFAQDGIMPADYNAQDRSTMQAWLDRYFNQAHRLPDLSQAGFKPVSGRLLTTDQGAAAMVLYQNAQGRRISFYIRPPGPNNGFLPRGSRSADGLQADYWSGGGYNYAMVSPVDQAAPQQMKF
>CP027723.1|AZE84637.1|3627729_3628437_-|YebC-like-protein
MGAQWKVKHKEAAANAKGKIFGKLVKEITIAARNGADTSTNAHLRLVVEQAKKASMPKETLDRAIKKGAGLLGETVQYHRVTYEGFAPHQVPLIVECVTDNINRTVAEIRVAFRKGQLGASGSVAWDFNHVGLIEASPDTPDADAEMAAIEAGAQDFEDGEEAGTTLFITETTDLDAVQKALPEQGFTVLSAKLGYLSKNPVSGLSDEQMAEVEAFLEGLDNHDDVQDMFVGLAG
>CP027723.1|AZE84638.1|3628536_3629394_-|Phosphonate-uptake-and-metabolism-regulator,-LysR-family
MNLFQLRAFDAVAREGSFTRAAARLFISQPAVTGHIKALEEHYQIPLLRRTARRVELTEEGARLAAITRAIFGLVDEAQAMLEANRQLLTGRLEVAADGPHLVMPMIARLRALYPGVTVNLRLGNAQETLAALLSEHADVAVLTEVEPRNGLHLHPLGESRICALVPAAHPWATQTEGIALAALNEAIMVLREPGSITRRTFDDACLAANVRPRVLLELDSREAVTEAVAAELGVGVVSSIEVSQDPRVRAVPIRGDGLLNRHLLGCLERRRSLRLIQAFFQLAP
>CP027723.1|AZE84639.1|3629505_3630615_+|2-aminoethylphosphonate:pyruvate-aminotransferase
MTPAAPLLLTPGPLTTSERTRQAMMVDWGSWDERFNQLTASVCEHLLAIIHGADSHHCVPLQGSGTFAVEAAIGTLVPRNGKVLVLINGAYGKRLAKICDVLGRAYSSYETPEDQPTTAADVDRLLRADAAITHVALIHCETSTGILNPLAQIAEVVKRHGKRLIIDAMSSFGALPIDARQVPFDALIAASGKCLEGVPGMGFVLAEKTALAAAAGNCHSLAMDLFDQHGYMARTGQWRFTPPTHVVAALHEALLQYYEEGGLPARHQRYATNCRTLLDGMAELRLRSFLPAAIQAPIIVTFHAPKDPRYQFKDFYERVKAKGFILYPGKLTQVDTFRVGCIGHVDAKGMQAAVNAIAEALQEMSVLDI
>CP027723.1|AZE84640.1|3630641_3631469_+|Phosphonoacetaldehyde-hydrolase
MNYQNPTCLQAVILDWAGTVVDFGSFAPTQIFVEAFAEFGVQVSIEEARGPMGMGKWDHIRTLCDQPRVAERYRKAFGRTPTNEDVSAIYQRFMPLQIEKIAEHSALIPGALDTLAGVRAQGIKIGSCSGYPKQVMDKVVALAASNGYVADHVVATDEVPNGRPWPAQALANVIALGIEDVAACVKVDDTVPGILEGRRAGMWTVALTCSGNALGLTYEQFRALDSATLARERQRIEALFEGSRPHYVVDTITDLPQVIAHINARLARGEMPQSH
>CP027723.1|AZE84641.1|3631580_3632174_+|Cytochrome-b561
MPWKNSDTRYSSMSIALHWLMVVLLAVVYACIELRGQFPKGSGARTLIVEMHFMFGLTVFVLVWLRLFARSLGVAPQIVPAPPHWQRLLATLTHFALYGLMIGMPIAGWLIVSAEGHSVMFYGMELPPLIAENKALAKEIEGWHVLFGQIGYWLIGLHALAGIFHHYVLRDNTALRMMPGGRGLARNGVESANTSID
>CP027723.1|AZE84642.1|3632396_3633287_-|pyridoxal-phosphate-dependent-deaminase,-putative
MGPFDWLPRAPLEPVQLDWLNGIELAILRLDRIDPLISGNKWFKLTEHLNQARDAGATGIISLGGAYSNHLHALAAAGKRFGFPTVGLLRGHPQDTPTVLDLKAFGMHLHWLGYGGYRARHEPGFWLPWREQYPHLYPVPEGGGGLAGALGCAVLVEQARAQMGHLGWADYDAWWLAAGTGTTLAGLVLAEAGGHPVYGAMAVPDDHGVAQNVSAIVPAGYELLDASRGGFAKVDPALLDFIERTEQACGVPLEPLYTGKALLALKQQIEAGRIAPGTRLIFIHTGGLQGRRGFNA
>CP027723.1|AZE84643.1|3633345_3635385_-|2,4-dienoyl-CoA-reductase-(NADPH)
MTAAAYPHLLAPLDLGFTTLRNRTLMGSMHTGLEEKPGGFERMAAYFAERARGGVGLMVTGGIGPNDEGGVYAGAAKLTTDEEAQKHRIVTRAVHDAGGKICMQILHAGRYAYSPKQVAPSAIQAPINPFKPRELDEEGIEKQIQDFVTCARLAQVAEYDGVEIMGSEGYFINQFLAAHTNHRTDRWGGSFENRMRLAVEIVRRVREAVGPNFIIIFRLSMLDLVEGGSVWEEVVQLAKAIEQAGATIINTGIGWHEARIPTIATKVPRAAFSKVTAKLRGAVQIPLITTNRINTPEVAERILAEGDADMVSMARPFLADPEFVNKAAAGRADEINTCIGCNQACLDHTFGGKLTTCLVNPRACYETELNYLPVQQIKKIAVVGAGPAGLAAATVAAERGHQVTLFDSASEIGGQFNIAKRIPGKEEFFETLRYFNRKLQTTHVELCLNTRVDVAQLVAGGYDEVILATGIAPRTPAIPGVENAKVLNYLDVILERKPVGKRVAVIGAGGIGFDVSEFLVHQGVSTSLDREAFWKEWGIDTRLEARGGVAGIKPERHAPARDVFLLQRKASKVGDGLGKTTGWIHRTGLKNKQVQMLNSVEYLKIDDEGLHIRIGAEGEPQVLAVDNIVICAGQDPLRELHDGLVAAGQNVHLIGGADVAAELDAKRAINQGSRLAAEL
>CP027723.1|AZE84644.1|3635596_3636727_+|Hydrolase,-carbon-nitrogen-family
MRKLLVFTVTLALVASLAAYLVWTQERPVAHYLSDLRITLAVNEGQPAERGNLLGIQPELFPADYQSLERLHLKLSAYLQKAREQGLINDKTVVVLPEHVGTWLMLAGEKNELYQATHLKDAMNWLSISNPLQFLRAWISATGDNRMDDAYLRMKAPGMARDYQVLFGGLAKEFGVTLVAGSIALPNPSVTLGQLQVGHGALYNVSVVFAADGLPLGQPQRQLYPIYDERGFIEPGDESIVSVVDTPAGRLGVLIGSDSWYPDNYRKLNEQGAQLIAVPAYVTGRGTWERPWRGFKSVSTPSEVSLKPEETSEGEAWRRLTLIGQPPISQATAGMSVFLRGQFWDLGSAGQSFLSRNGQLFADGDARGARLLNIWL
>CP027723.1|AZE84645.1|3636731_3637766_+|Transcriptional-regulator,-AraC-family
MKPVRLGDLSVGFVHTLADAVQSHGLDPQTLLLQYGLDPARLAEAGARLSIPRYMRLGHAAIQLTGDPGLGLRMGQLSRLSQAGLAGVTAAQAPTVREAARTLTRFEPLYGSNYRGQSSFHEDAEGAWLRFYSISPYNAYNRFVVDSIIAGWLHQLSSLAQQRVQAQRIEIEFQAPDYIQLYGVLGDSPLQFGAHSNQLRLNQATLALRNPEHCPSTWHLLLQLCERELEQLTRTRSLRERITRLLGPMLNGGREPDLEEVAARLKLPTWTLRRKLADEGTQFRAVLNDTRRDLAMTYIRDTELAFGEIAYLLGFASAQAFQRAFRRWNNQTPGEFRRSQRHSA
>CP027723.1|AZE84646.1|3638098_3639106_+|Pyruvate-dehydrogenase-E1-component
MPASTARAAQLCIDALDTCACSRGSPLYTIMSMAGTLESSRQAWVIRGQSRSRRPGHWPIWFARNTGEKPLIYLHSATSSAQLCALSDQTAQRGILCNDSETRPSPWPRGAQPSLPLWLATHPGCTPYDPASGEEARAIVLAGLRTLYVDGQPGFYYLALHDQPSTLAAQTLDREGAIKGMYPVRRAAGVESVRLLGAGRALEEVMHAAQLLEQHWGITAHVWSCPSYTRLAREAAAAERWNRLHPCAPGRSSHLRDCLAGSRTPVIAVTGYPQVVVDPLAAHIDTRFVALGAGSVQPAAPNRYWIAVLALKALADEGHFDTQKVEEALQRYGLK

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Crispr_ID: CP027723_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027723_8

4294064-4294154

Orphan

Consensus_repeat	Method
CATTAGGGCAAGCCCCTCCCACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027723_8

>merge|CP027723|8|4294064-4294154|CRISPRCasFinder
CATTAGGGCAAGCCCCTCCCACATTTGATCTTCGCTGCTTTGAGCATTTCGTTCGCTTAACTGCCTGGCATTAGGGCAAGCCCCTCCCACA

>CP027723|8|8|4294064-4294154|CRISPRCasFinder
CATTAGGGCAAGCCCCTCCCACA	TTTGATCTTCGCTGCTTTGAGCATTTCGTTCGCTTAACTGCCTGG
CATTAGGGCAAGCCCCTCCCACA

Protein	Signature genes	Signature genes Name	Protein_function
CP027723.1\|AZE85222.1\|4285811_4286402_-\|RNA-polymerase-sigma-factor-SigX	unknown	unknown	gnl\|CDD\|236603
CP027723.1\|AZE85223.1\|4286489_4287314_-\|CmpX	unknown	unknown	gnl\|CDD\|366370
CP027723.1\|AZE85234.1\|4298555_4299470_+\|Cysteine-synthase	unknown	unknown	gnl\|CDD\|223110
CP027723.1\|AZE85231.1\|4294176_4295601_-\|Transcriptional-regulator,-GntR-family-domain	unknown	unknown	gnl\|CDD\|224089
CP027723.1\|AZE85237.1\|4301354_4302839_-\|2-methylcitrate-dehydratase	unknown	unknown	gnl\|CDD\|181845
CP027723.1\|AZE85239.1\|4304240_4306835_-\|2-methylcitrate-dehydratase-(2-methyl-trans-aconitate-forming)	unknown	unknown	gnl\|CDD\|131386
CP027723.1\|AZE85226.1\|4288669_4289161_-\|Ribonuclease-E-inhibitor-RraA	unknown	unknown	gnl\|CDD\|236487
CP027723.1\|AZE85230.1\|4293041_4293860_+\|Phosphoenolpyruvate-synthase-regulatory-protein	unknown	unknown	gnl\|CDD\|235419
CP027723.1\|AZE85228.1\|4289391_4290381_-\|Esterase/lipase/thioesterase-family-protein	unknown	unknown	gnl\|CDD\|366166
CP027723.1\|AZE85221.1\|4284723_4285704_-\|Nonspecific-porin-and-structural-outer-membrane-protein-OprF	unknown	unknown	gnl\|CDD\|368587
CP027723.1\|AZE85240.1\|4306853_4306997_+\|hypothetical-protein	unknown	unknown	unknown
CP027723.1\|AZE85232.1\|4295704_4296655_+\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	unknown	unknown	gnl\|CDD\|183067
CP027723.1\|AZE85236.1\|4300502_4301234_+\|Ser-tRNA(Ala)/Gly-tRNA(Ala)-deacylase	unknown	unknown	gnl\|CDD\|225427
CP027723.1\|AZE85235.1\|4299525_4300500_+\|Serine-acetyltransferase	unknown	unknown	gnl\|CDD\|223975
CP027723.1\|AZE85238.1\|4303038_4304229_-\|2-methylaconitate-isomerase	unknown	unknown	gnl\|CDD\|131387
CP027723.1\|AZE85233.1\|4296678_4298541_+\|Molybdopterin-synthase-adenylyltransferase	unknown	unknown	gnl\|CDD\|180967
CP027723.1\|AZE85227.1\|4289152_4289299_+\|hypothetical-protein	unknown	unknown	unknown
CP027723.1\|AZE85224.1\|4287316_4287562_-\|CrfX-protein	unknown	unknown	unknown
CP027723.1\|AZE85225.1\|4287648_4288644_-\|Magnesium-and-cobalt-transport-protein-CorA	unknown	unknown	gnl\|CDD\|213367
CP027723.1\|AZE85229.1\|4290487_4292863_-\|Phosphoenolpyruvate-synthase	unknown	unknown	gnl\|CDD\|235809

Protein	Function_ID	Function_description	E-value
CP027723.1\|AZE85222.1\|4285811_4286402_-\|RNA-polymerase-sigma-factor-SigX	gnl\|CDD\|236603	PRK09640, PRK09640, RNA polymerase sigma factor SigX; Reviewed.	4.26916e-118
CP027723.1\|AZE85223.1\|4286489_4287314_-\|CmpX	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	2.64254e-07
CP027723.1\|AZE85238.1\|4303038_4304229_-\|2-methylaconitate-isomerase	gnl\|CDD\|131387	TIGR02334, conserved_hypothetical_protein, probable AcnD-accessory protein PrpF. The 2-methylcitrate cycle is one of at least five degradation pathways for propionate via propionyl-CoA. Degradation of propionate toward pyruvate consumes oxaloacetate and releases succinate. Oxidation of succinate back into oxaloacetate by the TCA cycle makes the 2-methylcitrate pathway a cycle. This family consists of PrpF, an incompletely characterized protein that appears to be an essential accessory protein for the Fe/S-dependent 2-methylisocitrate dehydratase AcnD (TIGR02333). This protein is related to but distinct from FldA (part of pfam04303), a putative fluorene degradation protein of Sphingomonas sp. LB126. [Energy metabolism, Fermentation].	0
CP027723.1\|AZE85231.1\|4294176_4295601_-\|Transcriptional-regulator,-GntR-family-domain	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	6.59865e-104
CP027723.1\|AZE85237.1\|4301354_4302839_-\|2-methylcitrate-dehydratase	gnl\|CDD\|181845	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase.	0
CP027723.1\|AZE85239.1\|4304240_4306835_-\|2-methylcitrate-dehydratase-(2-methyl-trans-aconitate-forming)	gnl\|CDD\|131386	TIGR02333, 2-methyl_citrate_dehydratase_Fe-S_dependent_AcnD, 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) ().	0
CP027723.1\|AZE85226.1\|4288669_4289161_-\|Ribonuclease-E-inhibitor-RraA	gnl\|CDD\|236487	PRK09372, PRK09372, ribonuclease E inhibitor RraA.	5.35164e-108
CP027723.1\|AZE85230.1\|4293041_4293860_+\|Phosphoenolpyruvate-synthase-regulatory-protein	gnl\|CDD\|235419	PRK05339, PRK05339, pyruvate, phosphate dikinase/phosphoenolpyruvate synthase regulator.	2.61008e-129
CP027723.1\|AZE85228.1\|4289391_4290381_-\|Esterase/lipase/thioesterase-family-protein	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	4.13576e-11
CP027723.1\|AZE85234.1\|4298555_4299470_+\|Cysteine-synthase	gnl\|CDD\|223110	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism].	2.24687e-121
CP027723.1\|AZE85232.1\|4295704_4296655_+\|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	8.16593e-20
CP027723.1\|AZE85236.1\|4300502_4301234_+\|Ser-tRNA(Ala)/Gly-tRNA(Ala)-deacylase	gnl\|CDD\|225427	COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only].	2.0775e-72
CP027723.1\|AZE85235.1\|4299525_4300500_+\|Serine-acetyltransferase	gnl\|CDD\|223975	COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism].	1.5017e-54
CP027723.1\|AZE85233.1\|4296678_4298541_+\|Molybdopterin-synthase-adenylyltransferase	gnl\|CDD\|180967	PRK07411, PRK07411, molybdopterin-synthase adenylyltransferase MoeB.	2.20493e-145
CP027723.1\|AZE85221.1\|4284723_4285704_-\|Nonspecific-porin-and-structural-outer-membrane-protein-OprF	gnl\|CDD\|368587	pfam05736, OprF, OprF membrane domain. This domain represents the presumed membrane spanning region of the OprF proteins. This region is involved in channel formation and is thought to form an 8-stranded beta-barrel.	9.73091e-106
CP027723.1\|AZE85225.1\|4287648_4288644_-\|Magnesium-and-cobalt-transport-protein-CorA	gnl\|CDD\|213367	cd12833, ZntB-like_1, Salmonella typhimurium Zn2+ transporter ZntB-like subgroup. A bacterial subgroup belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subgroup includes the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, which occur in proteins belonging to this subfamily, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	9.33355e-118
CP027723.1\|AZE85229.1\|4290487_4292863_-\|Phosphoenolpyruvate-synthase	gnl\|CDD\|235809	PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated.	0

>CP027723.1|AZE85230.1|4293041_4293860_+|Phosphoenolpyruvate-synthase-regulatory-protein
MKRSAFFISDGTGITAETLGQSLLAQFENITFAKFTRPYIDSVDKARAMVQQINLAAEKDGCRPIIFDTIVNQDIREILATSNGFMIDIFSTFLAPLEQELSEHSSYSVGKSHSIGHNSNYMERIEAVNFALDNDDGARTHYYDKADLILVGVSRCGKTPTCLYMAMQFGIRAANYPLTEDDMEHLTLPAALRAHSHKLFGLTIDPDRLTAIRNERKPNSRYSSYAQCEFEVREVENLFRRENIAHINSTHFSVEEISAKILVEKGVERRFK
>CP027723.1|AZE85229.1|4290487_4292863_-|Phosphoenolpyruvate-synthase
MVEYVVSLDKLGVHDVEHVGGKNASLGEMISNLAGAGVSVPGGFATTAQAYRDFLELSGLNAQIHAALDALDVDDVNALAKTGAQIRQWIMEAEFPEKLNEEIRTAFATLSAGNPDMAVAVRSSATAEDLPDASFAGQQETFLNIRGVENVIRAAKEVFASLFNDRAISYRVHQGFDHKLVALSAGVQRMVRSETGTAGVMFTLDTESGFRDVVFITGAYGLGETVVQGAVNPDEFYVHKHTLEAGRPAILRRNLGSKAIKMIYGDEAKAGRSVKTVEVDKAERARFCLSDAEVSELAKQAMIIEKHYKCPMDIEWAKDGDDGKLYIVQARPETVKSRTSANVMERYLLKETGTVLVEGRAIGQRIGAGKVRIIKDVSEMDKVQPGDVLVSDMTDPDWEPVMKRASAIVTNRGGRTCHAAIIARELGIPAVVGCGNATQLLKDGQGVTVSCAEGDTGFIFEGELGFDIKQNSIDAMPDLPFKIMMNVGNPDRAFDFAQLPNAGVGLARLEFIINRMIGVHPKALLNYDGLPLDIKESVDKRIAGYNDPVGFYVEKLVEGISTLAAAFYPKKVIVRLSDFKSNEYANLIGGKLYEPEEENPMLGFRGASRYISEAFRDCFELECRALKRVRNEMGLTNVEIMVPFVRTLGEASQVVDLLAENGLTRGENGLRVIMMCELPSNAILAEEFLEFFDGFSIGSNDLTQLTLGLDRDSGIIAHLFDERNPAVKKLLSNAIQACNKAGKYIGICGQGPSDHPDLARWLMEQGIESVSLNPDSVLETWFFLAEGQASA
>CP027723.1|AZE85228.1|4289391_4290381_-|Esterase/lipase/thioesterase-family-protein
MQSSSNLFPVALISAERRGDLSEDVYRLKPGNSPDATVELAVTRLGLADVPENRGTPVIFLHGSFSNRRFWYSPKGIGLGAHLARRGFDVWIPEMRGHGLSKRNHDYVRNRVSDYARYDLPAIGAFVHEQSGQVPHWIGHSLGATTLAAALGGQTLGAQLVASVALFGCQVSRTHWPLKIPPVEWGGRFILKRLAQVSGPRFKRGPEDEPAGVMIEALRWNGLFGRFGDAERDWWKGLSEVDVPLLAVSAAGDRQDPDWACRKLFEQVGSEHRQYLCLGRGQGFTEDFGHVQMLVSKAAQAQVWPLVERWLKDPLTPVFGTRPEVAEAV
>CP027723.1|AZE85227.1|4289152_4289299_+|hypothetical-protein
MVHRETPVIKEGVEQLTAYIRKNVLLQAFFKYPTTGAGHDQSAINATQ
>CP027723.1|AZE85226.1|4288669_4289161_-|Ribonuclease-E-inhibitor-RraA
MDHYVTPDLCDAYPELVQVLEPMFSNFGGRDSFGGEIVTVKCFEDNSLVKTQAEQPGAGKVLVVDGGGSLRRALLGDLIAEKAAKNGWEGMVIYGCIRDVDVIAQTDLGVQALASHPMKTDKRGLGDLNVVVTFAGVTFRPGEYVYADNNGVIVSPSPLKMPE
>CP027723.1|AZE85225.1|4287648_4288644_-|Magnesium-and-cobalt-transport-protein-CorA
MFEEDNAQWGLVHALVLDGKGGARSIARTELDELHLQPQESLWLHWDRSHPQTQTWLRKSSGLSEFACDLLLEENTRPRLLPLPDAELLLFLRGINLNPGAEPEDMVSVRIFAAATRVISLRLRPLRATDELLVQLAEGKGPRSASELILYMAQYLTNKVQDLVTGLSEIVDAEEEKLDADERYTPEHGSVLQIRRRAAGLKRFLAPQRDIFAQLTRIKLAWFCDDDADYWNELHNSLTRYLEELELARERVGLVLEAEDRRLSLRMNRTMYRFGIITGIFLPMSFLTGLLGINVGGIPFSSSPYGFMIACLLMVSVALGQWWLFRRLRWV
>CP027723.1|AZE85224.1|4287316_4287562_-|CrfX-protein
MHDPFEQSLRDMLNASPSNRDDDACLGRVLKTANRQVGAGDLFGLLGRWVPALMMALNNGSAHVSPVSRKKPLARTADKAD
>CP027723.1|AZE85223.1|4286489_4287314_-|CmpX
MELDLWTQSLVTAMTALWTKVANFIPNLFGALVLVLLGFVVAKLLDTLLSKLLAKLGLDRLMAGTGLTKLLGRAGLQVPISTLVGKIVYWFVLLIFLVSAAQSLGLERVSATLDMLALYLPKVFGGALVLLVGVLLAQLANGLVRGAAEGVGLDYAAGLGRIAQGLVIIISISVAISQLEVKTDLLNHVIVIVLITVGLAVALAMGLGSREIAGQILAGIYVRELYQVGQQVRVGEVEGQIEEIGTVKTTVLTDDGELVSLSNRILLEQQVSSR
>CP027723.1|AZE85222.1|4285811_4286402_-|RNA-polymerase-sigma-factor-SigX
MNKAQTLSTRYDPRELSDEELVARSHTELFHVTRAYEELMRRYQRTLFNVCSRYLGNDRDADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSITYNECITQYRKERRKRRLMDALSLDPLEEASEEKAPTPEEKGGLDRWLVHVNPIDREILVLRFVAELEFQEIADIMHMGLSATKMRYKRALDKLREKFAGETET
>CP027723.1|AZE85221.1|4284723_4285704_-|Nonspecific-porin-and-structural-outer-membrane-protein-OprF
MKLKNTLGLAIGSLIAATSFGVLAQGQGAVEGELFYKKQYNDSVKHIEDGFNPGARIGYFLTDDLSLNLSYDKTNHTRSNDGTGSQKIKGDTGSLVAQYHFGQAGVDSLRPYVEGGFGHQSRTNVQADGHSGRDQTTFATIGTGVKYYFTNNLYARAGVEADYGLDNGKWDYSALVGLGVNFGGNAGAAAPAPTPAPAPEPVPEPEAPVAQVVRVELDVKFDFDKAVVKPNSYGDVKNLADFMAQYPSTNVEVAGHTDSVGPDAYNQKLSQRRADAVKQVLVKDGVAPSRVTAVGYGESRPVADNATEAGRAVNRRVEASVEATAQ
>CP027723.1|AZE85231.1|4294176_4295601_-|Transcriptional-regulator,-GntR-family-domain
MTVKTNIDMVSIMREGLSNGQGVKYKRLSDVMERGILEGTIEPGRKLPPHRVLSDNLGVTIGTISRAYGELERLGLVVARVGDGTFVRKRGMERQRDEGFRNVSEEPRQYFDMSRNMHIPGQETVFLAQSFQTLSTNGKFLQDISAYTPDAGLPRYREAGAQWLVQRDFHPIPEQVICVNGGQHGLLCAMMALLRAGDTVVTEQLTYPGLITAARMLGVRLIGLEMDEEGVLPGALDEVCRNHRISALYCTPTIQNPTTAVLSVSRREALAKVCREHNLLILEDEAHGVLVEDRPPPLSYFAPERTILISSLSKAVSAGLRVGYVHAPPALVSRISAALRSTCWMATPVTLELATQWIENGTAEYLLRQQINEISRRKALVVGLLSGLQYRTHLNSPHFWIEVPEPWRASEIEAELKQNNYLIATAEAFAVGQTAVPQFIRASICNTSGDDQLLRAGFDALATALGQGGGRFHL
>CP027723.1|AZE85232.1|4295704_4296655_+|Permease-of-the-drug/metabolite-transporter-(DMT)-superfamily
MPMSAVLENTAKTKTPKQWLAGLVTSIMFLIVCLSWGTTWLGIKIAVESVPPLTSAGLRFLIAFPLFLCFALVRREPILFPRESRWFFVFVTLSYFSIPYYLLNYGEMHVSSGLTALLFSCMPVFILIFSALFLRERIYLSQVVGIGIGFGSLYMIIKSQGLHLDHAEFFGVLAILTAAIMHALCYVITKQKGSAISVITYNTLPIGIAGLMLFVAGLWFETPTFDAITLRSWSALFYLGLVASVGGFIVYFMLLKRLSPIILSFVFIIFPVFAVIIGAWYEGVAISRDLMLYSAILLAGFAITKLPIEKLLAKKN
>CP027723.1|AZE85233.1|4296678_4298541_+|Molybdopterin-synthase-adenylyltransferase
MDVLRPTALEQIYAHASRSYPEECCGFIFADGSVYLGSNIQNELHHKNPQMYPRSAANGYTFSVADTLLLNKAFRSDNPVVVIYHSHPDVGAYFSDEDQDKALFLGEPIYPVGYLVVDVRQGHALGSKLFAWDGRQFALQPFNDLHTELSMNAVSFPDILVRVAKLPQSTLEGAGSTLREVIENLCDSYPQLRPHLFHEKNNHLKEHFLFTAEEELIDADEPLPEQARIEVLLATSGGIDVDTLSNEEVQRYVRHITLPGVGREGQLSLKKAKVLIIGTGGLGSPISLYLAAAGIGTLGLVDFDVVESSNLQRQIVHGNSTLGLPKVESARQRLQDLNPHIRINTHNTAFTADNALELVGAYDLVIDGTDNFDTRYLVNDACVQLGKPLVYGAIYRFDGQISVLNHKGGPCYRCLFPKAPPAELAPNCSAGGVIGVLPGVVGMIQATEAIKLLIGIGEPLSGRLMRFDALAMKFSEIRFKRRPDCPCCSDLRHSETATPAACADAVPSQPSLAEERYIEPRVLKQVIDNPRSADVLLDVRDASELEVCKLPGVVHIPLAELDEQLGSLNRDNTHYLICYAGTRAEQAASTLLAAGFANTKVLQGGMKHWVRDVEPDMPLY
>CP027723.1|AZE85234.1|4298555_4299470_+|Cysteine-synthase
MLHNSILEVIGQTPIVRLAQFSEDLGIEVYAKLESLNPGGSHKARIALGMILDAERRGVLMRDCGQTIIEPSGGNTGIGLVMAGNVLGYKVVLVIPDNYSPEKQKLLRLYGARVVLSDSRLGNNSHGEKCMELLLENPNYVMLNQQRNGANPQTHRDTTAPEILRAFGERRVDYFVSGIGTGGHITGIGETLKAAWPALRVMGVEPEECDLLKDRHAPHAIQGLSIGLIPSILNLEVLDGMLKVSHGACLEMIKRIMRTDAISLGLSSAANMVAIAQLAPQLPPETVVLTMVYDNADSYLPSFE
>CP027723.1|AZE85235.1|4299525_4300500_+|Serine-acetyltransferase
MQQLHDELLTHLIQTLTPGQMKQLEPHLAPLIQNAAQAVAEDLIAYAYRDPASRGRGELILESYASFKAVLFYRLAHLVWHFPEPAQGVFTRMALKLGNQGKILSGAEIHPAARIGRRFVLDHGYGTVIGETCEIGNDCYILCGVTLGARGIANNPDGKRHPRLGNNVEVGAGARVLGCVQIGDNVFISPSCVITQDVPAGTKVKVVNQIQLQKNDESEHSSYLGAFALDERLHVVGEVDAGHKVTVLDADFHPLPGLMLEPTVKERHHLQFRLRRQGVGEQLPRLPLNLKVCGPAFEITLLSPPGLSAMVRHLLQASPLIVGG
>CP027723.1|AZE85236.1|4300502_4301234_+|Ser-tRNA(Ala)/Gly-tRNA(Ala)-deacylase
MSVHTMETLALFDSAPYQNAFNARVIAVSEHGVALEHTLFYPTGGGQPGDTGHLTLADGTRVAVTGTVRDPVLRSIIWHQVDHCPAQLIAGAQVDAGLDWERRYQHMKMHTCLHLLCSIIDAPVTGCSISADKGRLDFDLPEMTLDKDSITRDLNALIAQAHPVQTLSMAATEYATLLQITRTQAVAPPVIQGSVRVIEIPGIDIQPCGGTHVLNTEEIGRVFCEKIEKKSKHNRRVILRFEG
>CP027723.1|AZE85237.1|4301354_4302839_-|2-methylcitrate-dehydratase
MSANVDQNNRPDYDQVLQDIADYVLNYRIESESALDTARNCLMDTLGCGLLALRFPECTKHLGPLVEGTVVPFGARVPGTSLRLDPVKAAWDIGCIVRWLDYNDTWLAAEWGHPSDNLGGILAVADHLSQKRVANGDAPLSVRTVLEAMIMAHEIQGVIALENSFNRVGLDHVLLVKVASTAVTAKLMGANREQLLAALSHAFVDGHALRTYRHAPNAGSRKSWAAGDASSRGVRLADIALRGEMGIPGVLSAPQWGFYNVLFSHTNKDLALKSEEQRRFSLSQPYGTYVMENVLFKISFPAEFHAQTACEAAVTLHPQVKQRLHDIERIVITTHESAIRIISKVGPLANAADRDHCLQYMTAVPLAFGDLVAEHYEDPFHAAHPILDELRGKMVIVEDPRYSREYLEADKRSIANAVQVFFTDGTCTEQVAVEYPIGHRRRREEGIPLLEDKFRNNLATRFPAQRSAEIFALCKDQARLEATPVNRFMDLFMI
>CP027723.1|AZE85238.1|4303038_4304229_-|2-methylaconitate-isomerase
MAHAAQIKIPATYMRGGTSKGVFFSLEDLPPSAQVPGAARDALLLRVIGSPDPYDKQIDGMGGATSSTSKSVILARSTRAGHDVDYLFGQVSIDKPFVDWSGNCGNLSAAVGSFAISAGLVDPARVPHNGVAVVRIWQANIGKTIIAHVPITDGAVQETGDFELDGVTFPAAEVQLEFIDPAAEEEGGGGSMFPTGNLIDELEVPGVGTFKATLINAGIPTIFINAQDLGYTGTELQGAINGDPKALAMFETVRAYGALRMGLIKHLDEAAQRQHTPKVAFVAKPADYVASSGKAIKAGDVDLLVRALSMGKLHHAMMGTAAVAIGTAAAISGTLVNLAAGGVERNAVRFGHPSGTLRVGAEATQVNGEWVVKKAIMSRSARVLMEGFVRVPGDSF
>CP027723.1|AZE85239.1|4304240_4306835_-|2-methylcitrate-dehydratase-(2-methyl-trans-aconitate-forming)
MNTEFRKPLPGSRLDFFDARAAVEAISPGAYATLPYTSRVLAENLVRRCDPATLNASLSQLIERRRDLDFPWFPARVVCHDILGQTALVDLAGLRDAIALQGGDPAQVNPVVPTQLIVDHSLAVEAGGADPEAFEKNRAIEDRRNEDRFHFIEWTKKAFKNVDVIPPGNGIMHQINLEKMSPVIQVRDGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAESVMLGRASWMRLPESVGVELTGKLQPGITATDMVLALTEFLRQQKVVGAWLEFFGEGASALTLGDRATISNMAPEYGATAAMFYIDQQTIAYLKLTGREEEQVALVEQYARHTGLWADDLKGAQYERGLTFDLSSVVRNMAGPSNPHARVATRDLAAKGISGQWDDVPGQMPDGAVIIAAITSCTNTSNPRNVIAAGLLARNANRLGLTRKPWVKSSLAPGSKTVAMYLEEAGLGHELDKLGFGVVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEKDVLGLDADGKEVRLQDIWPSDEEIDAVVKASVKPEQFRAVYIPMFAIHEDTGPKVTPLYDWRPQSTYIRRPPYWEGALAGARPLKGMRPLAVLPDNITTDHLSPSNAIMLDSAAGEYLAKMGLPEVDFNSYATHRGDHLTAQRATFANPKLFNEMVMENGKVKQGSLARIEPEGQVTRMWEAIETYMERKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIAAEGFERIHRTNLVGMGVLPLEFLPGTDRHTLQIDGSETYDVVGERTPRAQLTLVINRKNGERVEVPVTCRLDTAEEVSIYEAGGVLQRFAQDFLESAATA
>CP027723.1|AZE85240.1|4306853_4306997_+|hypothetical-protein
MIAKEDLRRSRMECDQSVGGGLPPIAVVQCRLYQLTDCYRGQAPSHI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP027723_1	1.1\|709520\|38\|CP027723\|CRISPRCasFinder	709520-709557	38	CP027723.1	3089173-3089210	1	0.974
CP027723_5	5.1\|3155778\|35\|CP027723\|CRISPRCasFinder	3155778-3155812	35	CP027723.1	2475044-2475078	1	0.971
CP027723_5	5.1\|3155778\|35\|CP027723\|CRISPRCasFinder	3155778-3155812	35	CP027723.1	2792615-2792649	1	0.971
CP027723_5	5.1\|3155778\|35\|CP027723\|CRISPRCasFinder	3155778-3155812	35	CP027723.1	2994170-2994204	1	0.971
CP027723_5	5.1\|3155778\|35\|CP027723\|CRISPRCasFinder	3155778-3155812	35	CP027723.1	3602998-3603032	1	0.971
CP027723_5	5.1\|3155778\|35\|CP027723\|CRISPRCasFinder	3155778-3155812	35	CP027723.1	3603068-3603102	1	0.971
CP027723_8	8.1\|4294087\|45\|CP027723\|CRISPRCasFinder	4294087-4294131	45	CP027723.1	1900443-1900487	1	0.978
CP027723_1	1.1\|709520\|38\|CP027723\|CRISPRCasFinder	709520-709557	38	CP027723.1	709451-709488	2	0.947
CP027723_1	1.1\|709520\|38\|CP027723\|CRISPRCasFinder	709520-709557	38	CP027723.1	3089103-3089140	2	0.947
CP027723_3	3.3\|2516391\|41\|CP027723\|CRISPRCasFinder	2516391-2516431	41	CP027723.1	2475037-2475077	2	0.951
CP027723_3	3.3\|2516391\|41\|CP027723\|CRISPRCasFinder	2516391-2516431	41	CP027723.1	2792608-2792648	2	0.951
CP027723_3	3.3\|2516391\|41\|CP027723\|CRISPRCasFinder	2516391-2516431	41	CP027723.1	2994171-2994211	2	0.951
CP027723_3	3.3\|2516391\|41\|CP027723\|CRISPRCasFinder	2516391-2516431	41	CP027723.1	3089084-3089124	2	0.951
CP027723_3	3.3\|2516391\|41\|CP027723\|CRISPRCasFinder	2516391-2516431	41	CP027723.1	3602999-3603039	2	0.951
CP027723_3	3.3\|2516391\|41\|CP027723\|CRISPRCasFinder	2516391-2516431	41	CP027723.1	3603069-3603109	2	0.951
CP027723_5	5.1\|3155778\|35\|CP027723\|CRISPRCasFinder	3155778-3155812	35	CP027723.1	1349506-1349540	2	0.943
CP027723_5	5.1\|3155778\|35\|CP027723\|CRISPRCasFinder	3155778-3155812	35	CP027723.1	3602928-3602962	2	0.943
CP027723_8	8.1\|4294087\|45\|CP027723\|CRISPRCasFinder	4294087-4294131	45	CP027723.1	720953-720997	2	0.956
CP027723_8	8.1\|4294087\|45\|CP027723\|CRISPRCasFinder	4294087-4294131	45	CP027723.1	1234940-1234984	2	0.956
CP027723_8	8.1\|4294087\|45\|CP027723\|CRISPRCasFinder	4294087-4294131	45	CP027723.1	1586788-1586832	2	0.956
CP027723_8	8.1\|4294087\|45\|CP027723\|CRISPRCasFinder	4294087-4294131	45	CP027723.1	2322240-2322284	2	0.956
CP027723_8	8.1\|4294087\|45\|CP027723\|CRISPRCasFinder	4294087-4294131	45	CP027723.1	2800374-2800418	2	0.956
CP027723_8	8.1\|4294087\|45\|CP027723\|CRISPRCasFinder	4294087-4294131	45	CP027723.1	3389812-3389856	2	0.956

1. spacer 1.1|709520|38|CP027723|CRISPRCasFinder matches to position: 3089173-3089210, mismatch: 1, identity: 0.974

gcggcctcagagccgaccaggattttgtgtcgatcctg	CRISPR spacer
gcggcctcagagccgaccaggatgttgtgtcgatcctg	Protospacer
*********************** **************

2. spacer 5.1|3155778|35|CP027723|CRISPRCasFinder matches to position: 2475044-2475078, mismatch: 1, identity: 0.971

tttgtgtcgatcccggcccaaatgtgggagggggc	CRISPR spacer
tttgtgtcgatcccggtccaaatgtgggagggggc	Protospacer
****************.******************

3. spacer 5.1|3155778|35|CP027723|CRISPRCasFinder matches to position: 2792615-2792649, mismatch: 1, identity: 0.971

tttgtgtcgatcccggcccaaatgtgggagggggc	CRISPR spacer
tttgtgtcgatcccggtccaaatgtgggagggggc	Protospacer
****************.******************

4. spacer 5.1|3155778|35|CP027723|CRISPRCasFinder matches to position: 2994170-2994204, mismatch: 1, identity: 0.971

tttgtgtcgatcccggcccaaatgtgggagggggc	CRISPR spacer
tttgtgtcgatcctggcccaaatgtgggagggggc	Protospacer
*************.*********************

5. spacer 5.1|3155778|35|CP027723|CRISPRCasFinder matches to position: 3602998-3603032, mismatch: 1, identity: 0.971

tttgtgtcgatcccggcccaaatgtgggagggggc	CRISPR spacer
tttgtgtcgatcccggtccaaatgtgggagggggc	Protospacer
****************.******************

6. spacer 5.1|3155778|35|CP027723|CRISPRCasFinder matches to position: 3603068-3603102, mismatch: 1, identity: 0.971

tttgtgtcgatcccggcccaaatgtgggagggggc	CRISPR spacer
tttgtgtcgatcccggtccaaatgtgggagggggc	Protospacer
****************.******************

7. spacer 8.1|4294087|45|CP027723|CRISPRCasFinder matches to position: 1900443-1900487, mismatch: 1, identity: 0.978

tttgatcttcgctgctttgagcatttcgttcgcttaactgcctgg	CRISPR spacer
tttgatcttcgctgctttgagcatttcgttcgcttaactgactgg	Protospacer
**************************************** ****

8. spacer 1.1|709520|38|CP027723|CRISPRCasFinder matches to position: 709451-709488, mismatch: 2, identity: 0.947

gcggcctcagagccgaccaggattttgtgtcgatcctg	CRISPR spacer
gcggccccagagccgaccaggatgttgtgtcgatcctg	Protospacer
******.**************** **************

9. spacer 1.1|709520|38|CP027723|CRISPRCasFinder matches to position: 3089103-3089140, mismatch: 2, identity: 0.947

gcggcctcagagccgaccaggattttgtgtcgatcctg	CRISPR spacer
gcggcctcagggccgaccaggatgttgtgtcgatcctg	Protospacer
**********.************ **************

10. spacer 3.3|2516391|41|CP027723|CRISPRCasFinder matches to position: 2475037-2475077, mismatch: 2, identity: 0.951

ccgggattttgtgtcgatcctggtccaaatgtgggaggggg	CRISPR spacer
ccggtattttgtgtcgatcccggtccaaatgtgggaggggg	Protospacer
**** ***************.********************

11. spacer 3.3|2516391|41|CP027723|CRISPRCasFinder matches to position: 2792608-2792648, mismatch: 2, identity: 0.951

ccgggattttgtgtcgatcctggtccaaatgtgggaggggg	CRISPR spacer
ccaggattttgtgtcgatcccggtccaaatgtgggaggggg	Protospacer
**.*****************.********************

12. spacer 3.3|2516391|41|CP027723|CRISPRCasFinder matches to position: 2994171-2994211, mismatch: 2, identity: 0.951

ccgggattttgtgtcgatcctggtccaaatgtgggaggggg	CRISPR spacer
ccaggattttgtgtcgatcctggcccaaatgtgggaggggg	Protospacer
**.********************.*****************

13. spacer 3.3|2516391|41|CP027723|CRISPRCasFinder matches to position: 3089084-3089124, mismatch: 2, identity: 0.951

ccgggattttgtgtcgatcctggtccaaatgtgggaggggg	CRISPR spacer
ccaggatgttgtgtcgatcctggtccaaatgtgggaggggg	Protospacer
**.**** *********************************

14. spacer 3.3|2516391|41|CP027723|CRISPRCasFinder matches to position: 3602999-3603039, mismatch: 2, identity: 0.951

ccgggattttgtgtcgatcctggtccaaatgtgggaggggg	CRISPR spacer
ccaggattttgtgtcgatcccggtccaaatgtgggaggggg	Protospacer
**.*****************.********************

15. spacer 3.3|2516391|41|CP027723|CRISPRCasFinder matches to position: 3603069-3603109, mismatch: 2, identity: 0.951

ccgggattttgtgtcgatcctggtccaaatgtgggaggggg	CRISPR spacer
ccgggcttttgtgtcgatcccggtccaaatgtgggaggggg	Protospacer
***** **************.********************

16. spacer 5.1|3155778|35|CP027723|CRISPRCasFinder matches to position: 1349506-1349540, mismatch: 2, identity: 0.943

tttgtgtcgatcccggcccaaatgtgggagggggc	CRISPR spacer
ttggtgtcgatcccggtccaaatgtgggagggggc	Protospacer
** *************.******************

17. spacer 5.1|3155778|35|CP027723|CRISPRCasFinder matches to position: 3602928-3602962, mismatch: 2, identity: 0.943

tttgtgtcgatcccggcccaaatgtgggagggggc	CRISPR spacer
tttgtgtcgatcctggctcaaatgtgggagggggc	Protospacer
*************.***.*****************

18. spacer 8.1|4294087|45|CP027723|CRISPRCasFinder matches to position: 720953-720997, mismatch: 2, identity: 0.956

tttgatcttcgctgctttgagcatttcgttcgcttaactgcctgg	CRISPR spacer
tttgatcttcgctgctttaagcatttcgttcgcttaactgactgg	Protospacer
******************.********************* ****

19. spacer 8.1|4294087|45|CP027723|CRISPRCasFinder matches to position: 1234940-1234984, mismatch: 2, identity: 0.956

tttgatcttcgctgctttgagcatttcgttcgcttaactgcctgg	CRISPR spacer
tttgatcttcgctgctttaagcatttcgttcgcttaactgactgg	Protospacer
******************.********************* ****

20. spacer 8.1|4294087|45|CP027723|CRISPRCasFinder matches to position: 1586788-1586832, mismatch: 2, identity: 0.956

tttgatcttcgctgctttgagcatttcgttcgcttaactgcctgg	CRISPR spacer
tttgatctttgctgctttgagcatttcgttcgcttaactgactgg	Protospacer
*********.****************************** ****

21. spacer 8.1|4294087|45|CP027723|CRISPRCasFinder matches to position: 2322240-2322284, mismatch: 2, identity: 0.956

tttgatcttcgctgctttgagcatttcgttcgcttaactgcctgg	CRISPR spacer
tttgatcttcgctgcttggagcatttcgttcgcttaactgactgg	Protospacer
***************** ********************** ****

22. spacer 8.1|4294087|45|CP027723|CRISPRCasFinder matches to position: 2800374-2800418, mismatch: 2, identity: 0.956

tttgatcttcgctgctttgagcatttcgttcgcttaactgcctgg	CRISPR spacer
tttgatcttcgctgctttaagcatttcgttcgcttaactgactgg	Protospacer
******************.********************* ****

23. spacer 8.1|4294087|45|CP027723|CRISPRCasFinder matches to position: 3389812-3389856, mismatch: 2, identity: 0.956

tttgatcttcgctgctttgagcatttcgttcgcttaactgcctgg	CRISPR spacer
tttgatcttcgctgctttaagcatttcgttcgcttaactgactgg	Protospacer
******************.********************* ****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1261317 : 1301820

uncultured_Caudovirales_phage(30.43%)

tail,tRNA,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE82552.1\|1261317_1261788_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
AZE82553.1\|1261920_1262976_-	Ferric iron ABC transporter, ATP-binding protein	Q6GZ03	Mycoplasma_phage	7.9e-22	38.4
AZE82554.1\|1262972_1263896_-	Ornithine carbamoyltransferase	A0A1J0F9B8	Only_Syngen_Nebraska_virus	2.7e-18	27.4
AZE82555.1\|1264324_1266433_+	Formate dehydrogenase-O, major subunit	NA	NA	NA	NA
AZE82556.1\|1266532_1266871_+	Glutaredoxin-related protein	NA	NA	NA	NA
AZE82557.1\|1266939_1267410_-	Bacterioferritin	NA	NA	NA	NA
AZE82558.1\|1267610_1267829_-	Bacterioferritin-associated ferredoxin	NA	NA	NA	NA
AZE82559.1\|1268073_1268676_+	Alkyl hydroperoxide reductase subunit C-like protein	NA	NA	NA	NA
AZE82560.1\|1268740_1269415_-	Ribonuclease T	NA	NA	NA	NA
AZE82561.1\|1269411_1270458_-	Dihydroorotase	NA	NA	NA	NA
AZE82562.1\|1270614_1271523_+	Sodium-type flagellar protein motY precursor	NA	NA	NA	NA
AZE82563.1\|1271652_1272870_+	Argininosuccinate synthase	NA	NA	NA	NA
AZE82564.1\|1273495_1274128_+	Two-component transcriptional response regulator, LuxR family	NA	NA	NA	NA
AZE82565.1\|1274216_1274399_-	hypothetical protein	NA	NA	NA	NA
AZE82566.1\|1274507_1275146_-	Endonuclease III	NA	NA	NA	NA
AZE82567.1\|1275215_1276196_-	Electron transport complex protein RnfB	NA	NA	NA	NA
AZE82568.1\|1276283_1278335_-\|tRNA	Methionyl-tRNA synthetase	NA	NA	NA	NA
AZE82569.1\|1278506_1279601_+	[4Fe-4S] cluster assembly scaffold protein Mrp (ApbC)	NA	NA	NA	NA
AZE82570.1\|1280061_1280385_-	4Fe-4S dicluster domain	NA	NA	NA	NA
AZE82571.1\|1280527_1283119_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	2.1e-28	21.5
AZE82572.1\|1283486_1283762_-	hypothetical protein	NA	NA	NA	NA
AZE82573.1\|1284172_1284844_-	hypothetical protein	NA	NA	NA	NA
AZE82574.1\|1284885_1285257_-	hypothetical protein	NA	NA	NA	NA
AZE82575.1\|1285249_1285738_-	GepA protein	D0UIM3	Aggregatibacter_phage	4.9e-27	44.5
AZE82576.1\|1285970_1286705_+	Transcriptional regulator	B5TK58	Pseudomonas_phage	1.8e-118	86.9
AZE82577.1\|1287297_1287636_+	Holin	B5TK61	Pseudomonas_phage	2.8e-45	81.8
AZE82578.1\|1287655_1288171_+	hypothetical protein	NA	NA	NA	NA
AZE82579.1\|1288174_1288783_+\|plate	Baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	1.5e-44	51.7
AZE82580.1\|1288795_1289128_+\|plate	Baseplate assembly protein W	A0A2H4JI46	uncultured_Caudovirales_phage	1.4e-36	69.1
AZE82581.1\|1289124_1290120_+\|plate	Phage-related baseplate assembly protein	A0A2H4JC04	uncultured_Caudovirales_phage	3.9e-111	63.8
AZE82582.1\|1290116_1290845_+\|tail	Phage tail fiber	A0A2H4JDK0	uncultured_Caudovirales_phage	5.4e-38	52.7
AZE82583.1\|1290841_1291372_+\|tail	Phage tail fiber protein	B0ZSG1	Halomonas_phage	1.6e-47	55.1
AZE82584.1\|1291419_1292205_+	hypothetical protein	NA	NA	NA	NA
AZE82585.1\|1292205_1292508_+	Phage protein	Q8H9M8	Vibrio_phage	4.3e-13	48.0
AZE82586.1\|1292594_1292768_+	hypothetical protein	NA	NA	NA	NA
AZE82587.1\|1292770_1293937_+\|tail	Major tail sheath protein	B0ZSG8	Halomonas_phage	7.2e-125	57.0
AZE82588.1\|1293936_1294443_+	hypothetical protein	Q6R4W3	Vibrio_virus	6.5e-22	35.1
AZE82589.1\|1294496_1295078_+	hypothetical protein	B0ZSH0	Halomonas_phage	3.8e-26	36.2
AZE82590.1\|1295074_1295200_+	hypothetical protein	NA	NA	NA	NA
AZE82591.1\|1295206_1297429_+\|tail	Phage tail length tape-measure protein	Q8HAC2	Salmonella_phage	1.0e-15	28.2
AZE82592.1\|1297428_1297812_+\|tail	Unclassified tail protein	A0A2H4JAC8	uncultured_Caudovirales_phage	5.0e-35	56.7
AZE82593.1\|1297804_1298017_+\|tail	P2-like prophage tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	1.2e-17	64.3
AZE82594.1\|1298026_1299028_+\|tail	Phage tail protein D	A0A2H4JH05	uncultured_Caudovirales_phage	4.9e-98	54.5
AZE82595.1\|1299050_1299608_+	Lytic enzyme	B5TK83	Pseudomonas_phage	4.2e-75	71.0
AZE82596.1\|1299595_1300096_+	hypothetical protein	B5TK84	Pseudomonas_phage	2.6e-23	44.3
AZE82597.1\|1300177_1300678_+	Nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	4.4e-71	83.7
AZE82598.1\|1300761_1301820_+	RecA protein	A0A0S2MVG1	Bacillus_phage	2.4e-111	62.4

DBSCAN-SWA_2

1411454 : 1416380

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE82704.1\|1411454_1412204_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.2e-62	49.8
AZE82705.1\|1412203_1412881_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.1e-43	53.1
AZE82706.1\|1413089_1413926_+	Murein hydrolase activator NlpD	A0A0S2SXL7	Bacillus_phage	8.2e-06	33.3
AZE82707.1\|1414031_1415039_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.3e-34	36.2
AZE82708.1\|1415215_1415425_-	Cold shock protein of CSP family	Q9AZD3	Lactococcus_phage	2.2e-16	66.7
AZE82709.1\|1415813_1416380_+	Deoxycytidine triphosphate deaminase	S5VM63	Pseudomonas_phage	6.2e-74	73.3

DBSCAN-SWA_3

1567213 : 1573233

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE82853.1\|1567213_1567927_+	Phosphoribosylaminoimidazole-succinocarboxamide synthase	A0A0E3HWF9	Synechococcus_phage	6.7e-41	37.1
AZE82854.1\|1568178_1568424_-	mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	4.3e-24	80.6
AZE82855.1\|1568454_1568694_-	RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)	A0A2H4JBG1	uncultured_Caudovirales_phage	2.3e-30	84.8
AZE82856.1\|1569240_1570467_-	putative MFS-type transporter	NA	NA	NA	NA
AZE82857.1\|1570629_1571001_-	Helix-turn-helix motif	A0A222YXG1	Escherichia_phage	2.7e-41	66.7
AZE82858.1\|1571004_1571307_-	putative membrane protein	A0A0P0ZE17	Stx2-converting_phage	3.2e-16	43.3
AZE82859.1\|1571607_1573233_+	Methyl-accepting chemotaxis sensor/transducer protein	A0A2H4J162	uncultured_Caudovirales_phage	1.8e-65	42.0

DBSCAN-SWA_4

3492733 : 3498952

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE84515.1\|3492733_3493126_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	7.6e-55	82.2
AZE84516.1\|3493127_3493478_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	9.6e-41	70.8
AZE84517.1\|3493477_3493756_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.9e-23	56.6
AZE84518.1\|3493752_3494088_+\|tRNA	tRNA 2-thiouridine synthesis protein TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	7.5e-43	74.8
AZE84519.1\|3494084_3495086_+	Anthranilate phosphoribosyltransferase like	A0A2H4JBY5	uncultured_Caudovirales_phage	2.3e-164	85.1
AZE84520.1\|3495174_3496170_+	Glutathione S-transferase, omega	NA	NA	NA	NA
AZE84521.1\|3496276_3497671_-	Precorrin-2 oxidase	NA	NA	NA	NA
AZE84522.1\|3497671_3498952_-\|tRNA	Seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.3e-97	52.7

DBSCAN-SWA_5

5330287 : 5339563

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZE86203.1\|5330287_5332258_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	9.8e-74	38.5
AZE86204.1\|5332325_5334176_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	3.1e-37	34.5
AZE86205.1\|5334312_5337684_+	Sensory box/GGDEF family protein	A0A127AWB9	Bacillus_phage	3.0e-14	36.2
AZE86206.1\|5337956_5338379_-	Arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.4e-70	93.6
AZE86207.1\|5338399_5339113_-	Arsenic resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.1e-127	96.2
AZE86208.1\|5339206_5339563_-	Arsenical resistance operon repressor	A0A2H4J145	uncultured_Caudovirales_phage	3.9e-58	96.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027723

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection