CRISPRimmunity

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF57019.1\|1301894_1302365_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
AZF57020.1\|1302503_1303547_-	Ferric iron ABC transporter, ATP-binding protein	Q6GZ03	Mycoplasma_phage	3.3e-20	37.1
AZF57021.1\|1303543_1304467_-	Ornithine carbamoyltransferase	A0A1J0F9B8	Only_Syngen_Nebraska_virus	1.2e-18	27.4
AZF57022.1\|1304897_1307006_+	Formate dehydrogenase-O, major subunit	NA	NA	NA	NA
AZF57023.1\|1307105_1307444_+	Glutaredoxin-related protein	NA	NA	NA	NA
AZF57024.1\|1307635_1308106_-	Bacterioferritin	NA	NA	NA	NA
AZF57025.1\|1308306_1308525_-	Bacterioferritin-associated ferredoxin	NA	NA	NA	NA
AZF57026.1\|1308590_1308749_-	hypothetical protein	NA	NA	NA	NA
AZF57027.1\|1308770_1309373_+	Alkyl hydroperoxide reductase subunit C-like protein	NA	NA	NA	NA
AZF57028.1\|1309438_1310113_-	Ribonuclease T	NA	NA	NA	NA
AZF57029.1\|1310109_1311156_-	Dihydroorotase	NA	NA	NA	NA
AZF57030.1\|1311312_1312221_+	Sodium-type flagellar protein motY precursor	NA	NA	NA	NA
AZF57031.1\|1312350_1313568_+	Argininosuccinate synthase	NA	NA	NA	NA
AZF57032.1\|1314195_1314828_+	Two-component transcriptional response regulator, LuxR family	NA	NA	NA	NA
AZF57033.1\|1314915_1315098_-	hypothetical protein	NA	NA	NA	NA
AZF57034.1\|1315204_1315843_-	Endonuclease III	NA	NA	NA	NA
AZF57035.1\|1315912_1316887_-	Electron transport complex protein RnfB	NA	NA	NA	NA
AZF57036.1\|1316974_1319026_-\|tRNA	Methionyl-tRNA synthetase	NA	NA	NA	NA
AZF57037.1\|1319198_1320293_+	[4Fe-4S] cluster assembly scaffold protein Mrp (ApbC)	NA	NA	NA	NA
AZF57038.1\|1320746_1321070_-	4Fe-4S dicluster domain	NA	NA	NA	NA
AZF57039.1\|1321212_1323804_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	2.1e-28	21.5
AZF57040.1\|1323987_1324359_-	hypothetical protein	NA	NA	NA	NA
AZF57041.1\|1324351_1324840_-	GepA protein	D0UIM3	Aggregatibacter_phage	6.4e-27	44.5
AZF57042.1\|1325103_1325838_+	Transcriptional regulator	B5TK58	Pseudomonas_phage	1.1e-118	87.3
AZF57043.1\|1326025_1326145_+	hypothetical protein	NA	NA	NA	NA
AZF57044.1\|1326428_1326767_+	Holin	B5TK61	Pseudomonas_phage	2.8e-45	81.8
AZF57045.1\|1326786_1327302_+	hypothetical protein	NA	NA	NA	NA
AZF57046.1\|1327305_1327914_+\|plate	Baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	8.5e-45	52.3
AZF57047.1\|1327926_1328259_+\|plate	Baseplate assembly protein W	A0A2H4JI46	uncultured_Caudovirales_phage	1.0e-36	69.1
AZF57048.1\|1328255_1329251_+\|plate	Phage-related baseplate assembly protein	A0A2H4JC04	uncultured_Caudovirales_phage	7.0e-113	64.7
AZF57049.1\|1329247_1329886_+\|tail	Phage tail fiber	A0A2H4JDK0	uncultured_Caudovirales_phage	7.3e-39	53.8
AZF57050.1\|1329882_1330413_+\|tail	Phage tail fiber protein	B0ZSG1	Halomonas_phage	1.4e-48	56.2
AZF57051.1\|1330461_1331244_+	hypothetical protein	NA	NA	NA	NA
AZF57052.1\|1331246_1331549_+	Phage protein	Q8H9M8	Vibrio_phage	4.7e-12	48.1
AZF57053.1\|1331637_1331811_+	hypothetical protein	NA	NA	NA	NA
AZF57054.1\|1331813_1332980_+\|tail	Major tail sheath protein	B0ZSG8	Halomonas_phage	1.2e-124	57.0
AZF57055.1\|1332979_1333486_+	hypothetical protein	Q6R4W3	Vibrio_virus	3.8e-22	35.1
AZF57056.1\|1333538_1334120_+	hypothetical protein	B0ZSH0	Halomonas_phage	5.9e-27	37.7
AZF57057.1\|1334116_1334242_+	hypothetical protein	NA	NA	NA	NA
AZF57058.1\|1334248_1336468_+\|tail	Phage tail length tape-measure protein	NA	NA	NA	NA
AZF57059.1\|1336467_1336851_+\|tail	Unclassified tail protein	A0A2H4JAC8	uncultured_Caudovirales_phage	2.3e-35	56.7
AZF57060.1\|1336843_1337056_+\|tail	P2-like prophage tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	2.0e-17	62.9
AZF57061.1\|1337065_1338067_+\|tail	Phage tail protein D	A0A2H4JH05	uncultured_Caudovirales_phage	3.6e-101	56.0
AZF57062.1\|1338090_1338648_+	Lytic enzyme	B5TK83	Pseudomonas_phage	6.8e-73	71.0
AZF57063.1\|1338635_1339130_+	hypothetical protein	A0A2H4IZW4	uncultured_Caudovirales_phage	2.6e-36	59.5
AZF57064.1\|1339211_1339712_+	Nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	3.7e-70	83.1
AZF57065.1\|1339795_1340854_+	RecA protein	A0A0S2MVG1	Bacillus_phage	2.4e-111	62.4

DBSCAN-SWA_2

1365574 : 1375071

Pseudomonas_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF57094.1\|1365574_1367842_+	Sensor histidine kinase/response regulator	Q56AR1	Bacillus_thuringiensis_phage	2.8e-08	27.4
AZF57095.1\|1367838_1368849_+	Chemotaxis response regulator protein-glutamate methylesterase	Q6XM27	Feldmannia_irregularis_virus	1.7e-05	40.3
AZF57096.1\|1368901_1369903_+	Two-component transcriptional response regulator, LuxR family	A0A127AWB9	Bacillus_phage	2.8e-16	35.8
AZF57097.1\|1370365_1371733_-	Retron-type RNA-directed DNA polymerase	A0A0U4J920	Pseudomonas_phage	3.4e-33	32.5
AZF57098.1\|1372629_1373472_+	Peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	1.5e-07	46.6
AZF57099.1\|1373568_1375071_+\|tRNA	Lysyl-tRNA synthetase (class II)	A0A2K9KZX5	Tupanvirus	1.6e-84	39.4

DBSCAN-SWA_3

1449719 : 1454707

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF57172.1\|1449719_1450469_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.1e-61	49.4
AZF57173.1\|1450468_1451146_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.1e-43	53.1
AZF57174.1\|1451355_1452192_+	Murein hydrolase activator NlpD	A0A0S2SXL7	Bacillus_phage	8.2e-06	33.3
AZF57175.1\|1452297_1453305_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.3e-34	36.2
AZF57176.1\|1453543_1453753_-	Cold shock protein of CSP family	Q9AZD3	Lactococcus_phage	2.2e-16	66.7
AZF57177.1\|1454140_1454707_+	Deoxycytidine triphosphate deaminase	S5VM63	Pseudomonas_phage	6.2e-74	73.3

DBSCAN-SWA_4

1669079 : 1735349

Pseudomonas_virus(53.33%)

protease,tail,capsid,holin,plate,integrase,tRNA,head,terminase

attL 1659497:1659532|attR 1743145:1743180

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1659497:1659532	attL	NA	NA	NA	NA
AZF57391.1\|1669079_1669688_-\|protease	SOS-response repressor and protease LexA	A0A2H4JG58	uncultured_Caudovirales_phage	5.6e-12	53.8
AZF57392.1\|1669951_1670659_+	putative transcriptional regulator for fatty acid degradation FadQ, TetR family	NA	NA	NA	NA
AZF57393.1\|1670794_1671805_+	beta-N-acetylglucosaminidase	NA	NA	NA	NA
AZF57394.1\|1671914_1675202_+	DNA/RNA helicase, SNF2 family	V9XTV7	Choristoneura_murinana_nucleopolyhedrovirus	1.3e-46	30.3
AZF57395.1\|1675413_1678104_-	DNA/RNA helicase, SNF2 family	V9XTV7	Choristoneura_murinana_nucleopolyhedrovirus	5.1e-49	31.3
AZF57396.1\|1678113_1678680_-	hypothetical protein	NA	NA	NA	NA
AZF57397.1\|1678691_1682141_-	Transcription-repair coupling factor	NA	NA	NA	NA
AZF57398.1\|1682481_1683945_+	NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
AZF57399.1\|1684883_1686278_+	Soluble pyridine nucleotide transhydrogenase	NA	NA	NA	NA
AZF57400.1\|1686320_1687043_-	Glycerophosphoryl diester phosphodiesterase	A0A292GJA3	Xanthomonas_phage	1.9e-06	30.9
AZF57401.1\|1687087_1687666_-	hypothetical protein	NA	NA	NA	NA
AZF57402.1\|1687649_1687823_-	hypothetical protein	NA	NA	NA	NA
AZF57403.1\|1687826_1689011_+	Lipoprotein releasing system transmembrane protein LolC	NA	NA	NA	NA
AZF57404.1\|1689003_1689702_+	Lipoprotein-releasing system ATP-binding protein LolD	G9BWD6	Planktothrix_phage	1.4e-38	42.3
AZF57405.1\|1689762_1691007_+	Lipoprotein releasing system transmembrane protein LolE	NA	NA	NA	NA
AZF57406.1\|1691106_1692453_-	Copper sensory histidine kinase CusS	NA	NA	NA	NA
AZF57407.1\|1692449_1693130_-	Copper-sensing two-component system response regulator CusR	W8CYM9	Bacillus_phage	9.6e-29	34.8
AZF57408.1\|1693285_1693798_+	Copper tolerance protein	NA	NA	NA	NA
AZF57409.1\|1693864_1694695_+	NADPH-dependent 7-cyano-7-deazaguanine reductase	A0A2I7SAX1	Vibrio_phage	1.8e-37	37.5
AZF57410.1\|1694833_1695100_-	Chromosome segregation ATPase	NA	NA	NA	NA
AZF57411.1\|1695210_1695819_-	Phosphonoacetaldehyde phosphonohydrolase-related protein	NA	NA	NA	NA
AZF57412.1\|1696015_1696705_+	Outer-membrane-phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
AZF57413.1\|1696767_1697064_-	hypothetical protein	NA	NA	NA	NA
AZF57414.1\|1697340_1698522_+	Serine phosphatase RsbU, regulator of sigma subunit	NA	NA	NA	NA
AZF57415.1\|1698521_1699004_+	Serine-protein kinase RsbW	NA	NA	NA	NA
AZF57416.1\|1699130_1700279_+	Mobile element protein	NA	NA	NA	NA
AZF57417.1\|1700479_1701406_-	Transaldolase	A0A127KNC6	Cyanophage	5.3e-14	34.8
AZF57418.1\|1701404_1701542_+	hypothetical protein	NA	NA	NA	NA
AZF57419.1\|1701687_1702626_-\|tRNA	tRNA-dihydrouridine(20/20a) synthase	NA	NA	NA	NA
AZF57420.1\|1702783_1703953_+\|integrase	integrase family protein	L7TP61	Pseudomonas_virus	9.4e-133	62.5
AZF57421.1\|1704354_1704561_-	hypothetical protein	NA	NA	NA	NA
AZF57422.1\|1704557_1704905_-	Phage protein	Q9ZXI7	Pseudomonas_virus	7.5e-30	57.1
AZF57423.1\|1704930_1705749_-	hypothetical protein	A0A077K8T2	Ralstonia_phage	1.7e-24	34.2
AZF57424.1\|1705774_1708498_-	Phage protein	A0A2H4J936	uncultured_Caudovirales_phage	1.6e-268	51.3
AZF57425.1\|1708504_1708738_-	hypothetical protein	NA	NA	NA	NA
AZF57426.1\|1708814_1709186_-	hypothetical protein	A0A2H4J947	uncultured_Caudovirales_phage	6.6e-16	47.1
AZF57427.1\|1709185_1709482_-	hypothetical protein	Q9ZXJ1	Pseudomonas_virus	4.3e-34	71.3
AZF57428.1\|1709481_1709913_-	Phage protein	A0A2H4JG61	uncultured_Caudovirales_phage	4.3e-35	54.7
AZF57429.1\|1709981_1710194_-	hypothetical protein	A0A2H4JE67	uncultured_Caudovirales_phage	3.4e-09	49.2
AZF57430.1\|1711091_1711250_+	hypothetical protein	NA	NA	NA	NA
AZF57431.1\|1711302_1712571_-	hypothetical protein	Q9ZXJ8	Pseudomonas_virus	1.2e-189	79.5
AZF57432.1\|1712567_1713008_-\|tail	Phage tail protein	Q9ZXJ9	Pseudomonas_virus	7.0e-57	74.7
AZF57433.1\|1713013_1716700_-\|tail	Phage tail length tape-measure protein	E5FFG5	Burkholderia_phage	9.6e-107	30.6
AZF57434.1\|1716689_1716809_-\|tail	Phage tail protein GpE, GpE'	Q9ZXK1	Pseudomonas_virus	6.5e-10	76.9
AZF57435.1\|1716817_1717153_-\|tail	Phage tail fiber	Q9ZXK2	Pseudomonas_virus	6.0e-24	59.5
AZF57436.1\|1717202_1717718_-\|tail	Phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	1.9e-74	78.4
AZF57437.1\|1717775_1718945_-\|tail	Phage tail sheath monomer	Q9ZXK4	Pseudomonas_virus	3.8e-166	73.8
AZF57438.1\|1719050_1719440_-	phage protein	Q9ZXK5	Pseudomonas_virus	3.0e-11	49.3
AZF57439.1\|1719450_1721337_-\|tail	Phage tail fiber protein	A4PE45	Ralstonia_virus	2.5e-71	53.4
AZF57440.1\|1721333_1722035_-\|tail	Phage tail fiber	A0A2H4JAU2	uncultured_Caudovirales_phage	1.0e-70	71.8
AZF57441.1\|1722034_1722946_-\|plate	Baseplate assembly protein J	Q9ZXK8	Pseudomonas_virus	1.3e-124	76.1
AZF57442.1\|1722942_1723287_-\|plate	Phage baseplate assembly protein	Q9ZXK9	Pseudomonas_virus	1.3e-37	66.4
AZF57443.1\|1723283_1723862_-\|plate	Baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	6.0e-56	58.2
AZF57444.1\|1723923_1724382_-\|tail	Phage tail completion protein	Q9ZXL2	Pseudomonas_virus	1.5e-46	62.0
AZF57445.1\|1724371_1724854_-\|tail	Phage tail protein	Q9ZXL3	Pseudomonas_virus	1.6e-41	63.2
AZF57446.1\|1724850_1724991_-	hypothetical protein	NA	NA	NA	NA
AZF57447.1\|1724950_1725394_-	Phage spanin Rz LysB	Q9ZXL5	Pseudomonas_virus	1.1e-28	54.3
AZF57448.1\|1725390_1725594_-	hypothetical protein	NA	NA	NA	NA
AZF57449.1\|1725590_1726436_-	Putative phage-encoded peptidoglycan binding protein	Q9ZXL6	Pseudomonas_virus	5.1e-104	70.8
AZF57450.1\|1726432_1726711_-\|holin	Putative holin	Q9ZXL7	Pseudomonas_virus	2.1e-22	68.6
AZF57451.1\|1726712_1727066_-\|holin	Phage holin or membrane protein	Q9ZXL8	Pseudomonas_virus	2.9e-29	58.1
AZF57452.1\|1727093_1727306_-\|tail	Unclassified tail protein	Q9ZXL9	Pseudomonas_virus	9.3e-23	74.2
AZF57453.1\|1727305_1727767_-\|head	Phage head completion protein	Q9ZXM1	Pseudomonas_virus	1.6e-48	60.8
AZF57454.1\|1727763_1728060_-	hypothetical protein	E5FFG0	Burkholderia_phage	3.8e-06	52.6
AZF57455.1\|1728158_1728860_-\|terminase	Phage terminase, endonuclease subunit	Q9ZXM2	Pseudomonas_virus	4.7e-87	71.6
AZF57456.1\|1728864_1729887_-\|capsid	Phage major capsid protein	Q9ZXM3	Pseudomonas_virus	1.9e-121	61.8
AZF57457.1\|1729927_1730758_-\|capsid	Phage capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	1.7e-72	54.7
AZF57458.1\|1730913_1732671_+\|terminase	Phage terminase, ATPase subunit	Q9ZXM5	Pseudomonas_virus	1.1e-286	80.9
AZF57459.1\|1732670_1733720_+\|capsid	Phage-related capsid packaging protein	A0A2H4J922	uncultured_Caudovirales_phage	1.4e-143	76.4
AZF57460.1\|1733877_1734672_+	Dam modification methylase	C7BGE1	Burkholderia_phage	1.3e-101	66.5
AZF57461.1\|1734668_1735349_-	Gifsy-2 prophage protein	A0A2H4J991	uncultured_Caudovirales_phage	3.3e-122	89.3
1743145:1743180	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3267520 : 3277521

uncultured_Caudovirales_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF58835.1\|3267520_3268345_-\|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	A0A0U2S5Z2	Escherichia_phage	2.0e-105	71.6
AZF58836.1\|3268640_3269243_+	Inner membrane protein YohC	NA	NA	NA	NA
AZF58837.1\|3269371_3269866_+	Protein SprT	NA	NA	NA	NA
AZF58838.1\|3269959_3271135_-	Alpha-methylacyl-CoA racemase	NA	NA	NA	NA
AZF58839.1\|3271294_3271687_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.6e-55	83.7
AZF58840.1\|3271688_3272039_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	6.9e-39	71.1
AZF58841.1\|3272038_3272317_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.7e-24	59.6
AZF58842.1\|3272313_3272649_+\|tRNA	tRNA 2-thiouridine synthesis protein TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	4.4e-43	73.0
AZF58843.1\|3272645_3273647_+	Anthranilate phosphoribosyltransferase like	A0A2H4JBY5	uncultured_Caudovirales_phage	9.1e-169	86.6
AZF58844.1\|3273735_3274731_+	Glutathione S-transferase, omega	NA	NA	NA	NA
AZF58845.1\|3274845_3276240_-	Precorrin-2 oxidase	NA	NA	NA	NA
AZF58846.1\|3276240_3277521_-\|tRNA	Seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	53.3

DBSCAN-SWA_6

5291488 : 5302666

Mannheimia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF60661.1\|5291488_5291767_+	HigB toxin protein	A0A0M3LQB1	Mannheimia_phage	7.1e-15	39.1
AZF60662.1\|5291781_5292069_+	Antitoxin HigA	A0A0M3LPV0	Mannheimia_phage	8.4e-19	51.7
AZF60663.1\|5292257_5292662_-	hypothetical protein	NA	NA	NA	NA
AZF60664.1\|5292639_5292990_-	hypothetical protein	NA	NA	NA	NA
AZF60665.1\|5293354_5293810_-	chemotaxis protein, putative	NA	NA	NA	NA
AZF60666.1\|5293802_5299616_-	Signal transduction histidine kinase CheA	W8CYM9	Bacillus_phage	3.7e-12	35.9
AZF60667.1\|5299715_5301767_-	Methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.1e-18	40.5
AZF60668.1\|5301763_5302288_-	type IV pili signal transduction protein PilI	Q56AR1	Bacillus_thuringiensis_phage	2.0e-05	35.6
AZF60669.1\|5302300_5302666_-	twitching motility protein PilH	W8CYM9	Bacillus_phage	4.4e-12	34.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027761

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection