CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027762	Pseudomonas sp. LBUM920 chromosome, complete genome	2 crisprs	RT,DEDDh,DinG,csa3,cas3,WYL	2	8	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027762_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027762_1

1199626-1199742

Orphan

Consensus_repeat	Method
GCCGGGGCTCGACAGCTCCCACAGTTAATCTCTATTGCGGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027762_1

>merge|CP027762|1|1199626-1199742|CRISPRCasFinder
GCCGGGGCTCGACAGCTCCCACAGTTAATCTCTATTGCGGGCGAGATTTGTACTTGTCGCGATGCTTTTGTGAGCCGGGGCTCGACAGCTCCCACAGTTGATCTCTATTGCGGGCGA

>CP027762|1|1|1199626-1199742|CRISPRCasFinder
GCCGGGGCTCGACAGCTCCCACAGTTAATCTCTATTGCGGGCGA	GATTTGTACTTGTCGCGATGCTTTTGTGA
GCCGGGGCTCGACAGCTCCCACAGTTGATCTCTATTGCGGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
CP027762.1\|AZF62072.1\|1204047_1204296_+\|iron-uptake-protein	unknown	unknown	unknown
CP027762.1\|AZF62067.1\|1197023_1198535_-\|Efflux-pump-transporter-of-major-facilitator-superfamily-(MFS)	unknown	unknown	gnl\|CDD\|129794
CP027762.1\|AZF62069.1\|1199970_1202307_-\|Iron(III)-dicitrate-transport-protein-FecA	unknown	unknown	gnl\|CDD\|227113
CP027762.1\|AZF62063.1\|1192524_1193817_-\|Serine-transporter	unknown	unknown	gnl\|CDD\|273283
CP027762.1\|AZF62071.1\|1203334_1203823_-\|Sigma-factor,-ECF-subfamily	unknown	unknown	gnl\|CDD\|171561
CP027762.1\|AZF62060.1\|1190863_1191124_-\|YebG-protein	unknown	unknown	gnl\|CDD\|377779
CP027762.1\|AZF62075.1\|1206201_1206780_+\|RNA-polymerase-ECF-type-sigma-factor	unknown	unknown	gnl\|CDD\|224511
CP027762.1\|AZF62065.1\|1195393_1196341_+\|Glycine-cleavage-system-transcriptional-activator	unknown	unknown	gnl\|CDD\|182990
CP027762.1\|AZF62070.1\|1202396_1203338_-\|Iron-siderophore-sensor-protein	unknown	unknown	gnl\|CDD\|226235
CP027762.1\|AZF62064.1\|1193879_1195256_-\|L-serine-dehydratase,-beta-subunit	unknown	unknown	gnl\|CDD\|273233
CP027762.1\|AZF62074.1\|1205867_1206194_+\|iron-uptake-protein	unknown	unknown	gnl\|CDD\|371735
CP027762.1\|AZF62062.1\|1191911_1192226_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|338217
CP027762.1\|AZF62061.1\|1191426_1191915_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225764
CP027762.1\|AZF62068.1\|1198640_1199513_+\|Transcriptional-regulator,-LysR-family	unknown	unknown	gnl\|CDD\|176164
CP027762.1\|AZF62066.1\|1196554_1196965_+\|Ribosome-associated-inhibitor-A	unknown	unknown	gnl\|CDD\|238308
CP027762.1\|AZF62076.1\|1206776_1207754_+\|Iron-siderophore-sensor-protein	unknown	unknown	gnl\|CDD\|226235
CP027762.1\|AZF62078.1\|1210419_1210770_-\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|239274
CP027762.1\|AZF62073.1\|1204292_1205867_+\|iron-regulated-membrane-protein	unknown	unknown	gnl\|CDD\|377164
CP027762.1\|AZF62059.1\|1189789_1190809_+\|Branched-chain-amino-acid-dehydrogenase-(deaminating)	unknown	unknown	gnl\|CDD\|223411
CP027762.1\|AZF62077.1\|1208039_1210280_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657

Protein	Function_ID	Function_description	E-value
CP027762.1\|AZF62067.1\|1197023_1198535_-\|Efflux-pump-transporter-of-major-facilitator-superfamily-(MFS)	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.86314e-50
CP027762.1\|AZF62069.1\|1199970_1202307_-\|Iron(III)-dicitrate-transport-protein-FecA	gnl\|CDD\|227113	COG4772, FecA, Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism].	0
CP027762.1\|AZF62063.1\|1192524_1193817_-\|Serine-transporter	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	3.23617e-175
CP027762.1\|AZF62071.1\|1203334_1203823_-\|Sigma-factor,-ECF-subfamily	gnl\|CDD\|171561	PRK12528, PRK12528, RNA polymerase sigma factor; Provisional.	1.57389e-105
CP027762.1\|AZF62060.1\|1190863_1191124_-\|YebG-protein	gnl\|CDD\|377779	pfam07130, YebG, YebG protein. This family consists of several bacterial YebG proteins of around 75 residues in length. The exact function of this protein is unknown but it is thought to be involved in the SOS response. The induction of the yebG gene occurs as cell enter into the stationary growth phase and is dependent on is dependent on cyclic AMP and H-NS.	4.25734e-25
CP027762.1\|AZF62075.1\|1206201_1206780_+\|RNA-polymerase-ECF-type-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	1.79551e-32
CP027762.1\|AZF62065.1\|1195393_1196341_+\|Glycine-cleavage-system-transcriptional-activator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	6.32508e-87
CP027762.1\|AZF62070.1\|1202396_1203338_-\|Iron-siderophore-sensor-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	4.32878e-85
CP027762.1\|AZF62064.1\|1193879_1195256_-\|L-serine-dehydratase,-beta-subunit	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	0
CP027762.1\|AZF62074.1\|1205867_1206194_+\|iron-uptake-protein	gnl\|CDD\|371735	pfam11804, DUF3325, Protein of unknown function (DUF3325). This family of short proteins are functionally uncharacterized. This family is restricted to Alpha-, Beta- and Gamma-proteobacteria.	1.76197e-18
CP027762.1\|AZF62062.1\|1191911_1192226_-\|hypothetical-protein	gnl\|CDD\|338217	pfam12021, DUF3509, Protein of unknown function (DUF3509). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 92 to 110 amino acids in length. This protein has two completely conserved residues (G and R) that may be functionally important.	7.42101e-31
CP027762.1\|AZF62061.1\|1191426_1191915_+\|hypothetical-protein	gnl\|CDD\|225764	COG3223, COG3223, Predicted membrane protein [Function unknown].	2.17176e-33
CP027762.1\|AZF62068.1\|1198640_1199513_+\|Transcriptional-regulator,-LysR-family	gnl\|CDD\|176164	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 6. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.9292e-83
CP027762.1\|AZF62066.1\|1196554_1196965_+\|Ribosome-associated-inhibitor-A	gnl\|CDD\|238308	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).	5.64018e-09
CP027762.1\|AZF62076.1\|1206776_1207754_+\|Iron-siderophore-sensor-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	2.30409e-70
CP027762.1\|AZF62078.1\|1210419_1210770_-\|glutaredoxin-family-protein	gnl\|CDD\|239274	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein.	2.19712e-22
CP027762.1\|AZF62073.1\|1204292_1205867_+\|iron-regulated-membrane-protein	gnl\|CDD\|377164	pfam03929, PepSY_TM, PepSY-associated TM region. The PepSY_TM family is so named because it is an alignment of up to five transmembranes helices found in bacterial species some of which carry a nested PepSY domain, pfam03413.	3.63728e-75
CP027762.1\|AZF62059.1\|1189789_1190809_+\|Branched-chain-amino-acid-dehydrogenase-(deaminating)	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	8.92141e-84
CP027762.1\|AZF62077.1\|1208039_1210280_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	2.72045e-53

>CP027762.1|AZF62068.1|1198640_1199513_+|Transcriptional-regulator,-LysR-family
MATPRFDGVELFLQIVESGNLTEAAERLNLTRSAVGKGLARLEARLGTCLLQRSTRRQRLTEDGQAYYEHCLRALAELEAAESVLESGRQQPRGRLRASLPLAFGHHYAAPALWGLMDRYPQLEVEISFSDRLIDLAQEGFDVAVRIGPLPDTDRLSARRLGEQSVGLAASPAYLQRVGPIECIDDLASHRGIAYRCNNLYRSGMTSPLVLDDLQAVADAAIAGVGLAWLPSWLIAHYVLRGQLQAVLPSHRDQPAPIHVIWPTAAHMPAKTRCAIDALVAGTPSCLAGS
>CP027762.1|AZF62067.1|1197023_1198535_-|Efflux-pump-transporter-of-major-facilitator-superfamily-(MFS)
MPPAAAVSAVSAPRTARDSLALTAVCLVALMFGLEISSVPVILPTLEQQLGTGFQDAQWIMNAYTLACTSVLMAAGTLADRFGRRRMLVLCLWLFGLASLACGLANNASTLIAARFVQGVGAGAMMICQFAILSHQFREPTTRARAFAIWGVIAGVGLGFGPMVGALILAIADWRWVFLVHAPLTLLTLVLLRISVQESRDPAGHRLDIAGMLTLTLSVFALVYFITQGSEHGFGSPAMLGWAGLSLMALLLFIAVERRSTHPMFDFSVFRIQRFNGALMGSIGMNFSFWPFMIYLPLYFQAGLGYDTMTTGGALLAYTLPTLLVPPLAERLALRYGADRIIPLGLGLMGAGFMAMAAANGAEHPSVVLVLFSCVTAGVGLALTNSPTTNTTTGSVSADRAGMASGIDLSARLITLALNIALMGLVLLLGIGHHLSGLLPDATALDWPAISQNIAAGKLDTPMLAPADAQAALRHGAGWAMLFAGIGACGLALLSRYFFRRGS
>CP027762.1|AZF62066.1|1196554_1196965_+|Ribosome-associated-inhibitor-A
MQIQVNSDNHIESSIRLEEWVRTTIESTLERYEEDLTRVEVYLKDENGDKPGPHDLSCRLEARPKGHQPLSVLHKADTLEQAIDGAATKLEHALEHLYGKLRGKPRAAGQALPDTKADEAELEEEFLENEQAALNG
>CP027762.1|AZF62065.1|1195393_1196341_+|Glycine-cleavage-system-transcriptional-activator
MTRPLHGQTYVWLHVFSCAARHLSFTRCAEELHITPGAVSQQIRQLEERLGFRLFHRRARGVELSAEGQRLAATVGEAYGSIDAELQRLDAGMISGTLRLRSIPSFLGKWLTPRLPRLQQRFPDIQLRMVAEDSSVALHEGDFDLAIDLNDGSYPGLLSTALLDEQIFPVCAPSLLRGRPPLHGPADLVHFPLLHDITAWRGSYEYAEWEFYLNAIGYHHADVRRGHTFNRNHLTIEAAIAGMGVAIARRTLLNDELERGTLIVPFGVAVPNHKRYVLLYAPGALSHPGVRAVHDWLVEEAGIFRGLHPLGEGQL
>CP027762.1|AZF62064.1|1193879_1195256_-|L-serine-dehydratase,-beta-subunit
MAISVFDLFKVGIGPSSSHTVGPMRAAATFAQALTDQQLLSQTRRVEVRLYGSLSATGVGHATDRACVMGLMGEWPDNVDPTSINARIQQLRETGQLLLAGKQAIAFNWHTDLLLLEESLPYHPNAMSLHAYGDNGLLSEQTYYSVGGGFIIEAAEAASGIAPTSDVELPYDFSSAVELLALCNKHGLRVSELMMANERAWRSDEDIRSGLLHIWSVMRECVEQGLRDEGILPGGLDVPRRAAKLHRSLLEIGKPNVITSTLSAMEWVNLFALAVNEENAAGGRMVTAPTNGAAGIIPAVLHYYMKFNADASDDDVVNFFLAAAAVGILCKKNASISGAEVGCQGEVGSACAMAAAGLADILGATPEQLENAAEIGLEHNLGLTCDPVGGLVQVPCIERNAIAAVKAINATQMALRGDGKHFISLDRVIRTMRDTGADMHDKYKETSRGGLAVSWVEC
>CP027762.1|AZF62063.1|1192524_1193817_-|Serine-transporter
MTDVRTPAAENPAVAIETTVTKGWTKHDTTWMLGLYGTAIGAGTLFLPINAGVGGFWPLIVLALLAFPMTFFAHRGLTRFVLSGKSGDITDVVEEHFGVGAGKLITLLYFFAIFPILLVYSVALTNTLSSFMEHQLHMAPPPRAILSLVLILGLMAIVRCGQGVIVKAMSVLVYPFVAALLLLAVSLIPNWNGAFFASASEGMPLPIFFKTLWLAIPVMVFSFNHSPIISAFAVDQKRVYGAQAERKSSGILATAHGMMVLTVMFFCFSCVLALSPADLAAAKAQNISILSYLANHFQTPVIAYAAPLIALVAITKSFLGHYIGASEGFQGLIVKSLRGRNRTLSSKGLERCTALFMVLACWAVATFNPSILGMIETLGGPIIACLLFLMPMYAIRRVPALRQYSGQVSNVFVVVIGLIALSAIVFSVLP
>CP027762.1|AZF62062.1|1191911_1192226_-|hypothetical-protein
MDNPFQIITDTFTPKYRVNLSIQRLDGSIMLTLSNEDGVVAKRMISAEQRNDPQRLKRLVQSIQFGIAIEQGHSAMEILTVMTDGDHKLLQQPPARALPFSVGL
>CP027762.1|AZF62061.1|1191426_1191915_+|hypothetical-protein
MKINWAEKLRQNVHGLAESLGNLFVETFHYLALFAIGAVTAWAAVMEFLGMLETGHIKIDDILLLFIYLELGAMVGIYFKTNHMPVRFLIYVAITALTRLLISNVSHHNPPDIGIIYLCGGILLLAFSILVVRYASSAFPSVKVEGPRRRGEASLETEKGEL
>CP027762.1|AZF62060.1|1190863_1191124_-|YebG-protein
MAVEVVYRSSRDLERLFMDKAEADRHDKMLELAELLAEVLQKAVPSLSEQQVEEAGIYMAKNRDVFAKAFKSQPDALSELLNPTAE
>CP027762.1|AZF62059.1|1189789_1190809_+|Branched-chain-amino-acid-dehydrogenase-(deaminating)
MFALMHSTRLESLHLSVDPVTGLKAVIAIHNSRLGPALGGCRYLSYPDDESAVADAARLAQGMSYKAALAGLPVGGGTAVIIRPVHVESRAALFEAFGRCIEKLDGRFITSIDSGTSVADMDCIAQHTRFVTSTTAAGDPAPHAAMGVFTGIRAAAMARLGSDNLEGLRVAVQGLGNVGYALAEQLHAAGAELLVSDIDNGKVQLAMEQLGAHPIANDALLSTPCDILAPCGVGAVFNRHSVGQLRCAAVAGSASAQLTTLDIADQLEGRGILYAPDYVINSGGLIYVALKHSGAELPSITAHLANIGTRLTEIFAHAQAEKRSPARVADELAERLLYP
>CP027762.1|AZF62069.1|1199970_1202307_-|Iron(III)-dicitrate-transport-protein-FecA
MPQQPTLLARTLRQLLLGASLSLTALPSVMAADAKPYHIAPATLEAALNQFGREAGVLISFGSQVTAGMQSRGLSGNYSADEGLQKLLEGTGLQARAEGDNAYSLQPASAPATLQLQTSNVVGDWLGDAAQTNVFEHPGARDVIRRDEFERQGATQARDVLNRIPGVNAPENNGTGSHDMALNFGIRGLNPRLASRSTVLMDGIPVPFAPYGQPQLSFAPISMGNMDAVDVVRGGGAVRYGPQNVGGIVNFVTRAIPDAPTVKGGLQTETSPSSSHDGFKTTGNLLAGGTADNGLGGAILYSGTRGGDWRENSNTRIDDLILKGKYQLDDANSFNAMAQYYEGQADMPGGLNVKDYKADPYQSTRPYDKFWGRRTMFNAGYRYQEDRREFTANTFFTTTLRNGYLDQGNFLSLSPREYWVRGLETRFTQGFDLGPTSHEVGIGYRYINEAGHELRYRTPISANQQLPDTNSRNDRDTRGATEANAFFVDDRIDIGKWTITPGIRYEMIESQQTNNLTNVKYKGDYNTALPALNVLYHLTEDWNLYANTEGSFGSVQYSQMPNRVSSGEVKPEKARTWELGTRYDNGTLRAEIGAFLINFDNQYDSNQINDSVIARGETRHQGIESSLNYALDGLSPALAGFDVYATYAYVDATIREDGPNKGNRVPFSSKHKGTVGVGYTEGRWKLNLDSSYQSSQFADNANTQAESADGSTGRIPGYMLFSSRAAYDFGPQLSDLNVAVGVKNILNKQYYTRSFDDNNKGKYVGEPRTVYVQTSIAF
>CP027762.1|AZF62070.1|1202396_1203338_-|Iron-siderophore-sensor-protein
MNFSTQVAEQAVHWLMEMQQGALNPRQQAAWQQWLDAHSEHQRAWDHIQRVNQRLRGMPSPLAHAALNAPKTSSRRQALKLLLILGAGSAAAWSLRQQHILPPLSADYRSPVGQRRKVQLADGSQLQLNTGSAVDVHFDGSQRLVRLLEGEILLTARPGDTPLHVLTGQGLLSSQAARLNVRQFNDHTQLAVFDGHVAVMPNHYSGLPLTVEASRQVNFTRKGWDTPRPTDANSGAWADGMLVAAHMRLDDFLAELGRYRRGQINCDPQVANLLLSGSYPLDDSERILDLLEVSLPVKVRRFTRYWVTVQARA
>CP027762.1|AZF62071.1|1203334_1203823_-|Sigma-factor,-ECF-subfamily
MQPSTLVEVLYNDHHHWLTGWLRRKLGCPESAADLAQDTFIRVLTARDAPMLIEPRAFLTTVAKRVLFNFYRRQDLERAYLDALVQMPEHVAPSEEERAIILQTLLELDQLLDGLPVQVKRAFLLAQLDGLTYAQIGAELGISIATVKRHLNKAAMRCYFAL
>CP027762.1|AZF62072.1|1204047_1204296_+|iron-uptake-protein
MLAAVVGGYLMASLAAVCLALWMPTSRADAVITGMMSSFVFYLLAVIWCFACRTAGRAWFGVMLPSAMFATLAGIGLWMTRT
>CP027762.1|AZF62073.1|1204292_1205867_+|iron-regulated-membrane-protein
MKEGFRQAMAWLHTWAGLIFGWLLFAIFLTGTLSYFKDEITHWMQPEVQAYPLDDARSLAAAQTYLQQQAPNAARWFITLPDSRDPGLSVMWQDKVDPGKRGNFIQKVLDPVTSQPVQARESMGGEFFYRFHFQLQMPYPWGRWLSTIAAMVMFVALITGIITHKKIFKDFFTFRPRKGQRSWLDGHNAVGVLVLPFHLMITYSSLVIFMSMVMPAPIVASYGDDSRAFFNEVFPNTNNAPALGQPGVLLPLGPMYEQARQQWAGGHVGRLVVNNPGDVNASVNVVRAGADRVVHDFGSSVSFNGTTGELLRVSGEQSLPAAIGGSFYGLHMGHFAGPVLRWLYFICGLAGTAMIGTGLVIWLGKRQLKHAKTAAMPFELRLVEVLNMASMAGLMIAIAAFFWANRLLPVSFAERSDWEVQTFFIAWGLSLLHAVLRRGRQGWVEQLSLGALLFVAIPLLNALTTSQHLGVSLASGDWAMAGFDLTCLASGLFLTWAAWKMQRRAAPQLKAERARGLTLKQEAN
>CP027762.1|AZF62074.1|1205867_1206194_+|iron-uptake-protein
MLLALLMCYAGFTALCLSTDRHHGELLHSKPSPPRRLTLRVAGWLLLALSMWPAVAASNWAQGVVEWCAVLMLSALLLVLLLPYRPRLALILAGVGLLASPVAAFALL
>CP027762.1|AZF62075.1|1206201_1206780_+|RNA-polymerase-ECF-type-sigma-factor
MMISPPPESQDSQHTDAAGGRAHFLQVFLSQRSQMEALVSRRVGCRATAADLVQDLFLRFWRRPLVQVEELSTYLLRCAGNIAIDHLRSEGARVRSSEGWLPEQQDNQGSEPQAAFEAGNDLRHVEAALRSLPERTRQIFLLNRIHGRKYAQIAQAMGLSQSAVEKHMMRALEACKASLREPSSPRTPGKAP
>CP027762.1|AZF62076.1|1206776_1207754_+|Iron-siderophore-sensor-protein
MNVTPTPAQEQAALEWLSLLHDQPSSGDQATFSRWLRADPAHVEAYAQAQVLWELSEVPARKLADEEALALQGYLNAMNPPKRSRAVRWSGALAAAACLLVMVSMGAGWQPSRWVDDFGADYVTAPGQVQTVTLADQSQVTLDADSAIAVDFSHGERHIQLRRGAGFFSVTHTGQPFVVAAGSGEARVLGTQFEVRLQPAGAQVTVLSGRVGVTPSRQGQQQILTAGQQVAYADGVADPLHAVDCESRLAWRDGWLNYYKVPLADVVRDLGRYYPGRILLLNDEMGARRVSGSFPSKDPLAVLSALQAVLGFEQHAVLGRMIVLR
>CP027762.1|AZF62077.1|1208039_1210280_+|TonB-dependent-receptor
MTINTLSALLLASGLGSFAPLVLADTTQDVGSVNVAGKQTLGNGHMIREESAKARSTVTKEAMDEMSATANAIDKLKYTPGINVSSDDASGTSGTNFTMRGMSSDQVGVSVDGVPINDSGNYSVYSNQLGDPENLAEVFATQGSSEADGPHIGSSGGNIGMITIRPTKESGLFAKQIVGANDLRKTFVRVNTGDFGGLKSWVSASHLEGDKWRGKGTLRSDKVEWSSLFEDGNGNSTLATVKYNNQENYNYNTLSKSQFETDGRRKDYSQTPVYKSGLLSSSYKLNRNPFESVNATLTQRWQLQDNLALTVTPYYYWANGGSFSGQTASNLGPKSDKAGNYNLSNLQSANYYRPSWTETWRPGVTAKMKWDINEEHSLDYGYWYERARQRQTQPFIGINREGAPDDVWGDYNSGGQVVDKNGATVQGRHYYTVTPSQKLWVQDSWQATPDLSFVGGVAYQYVERDGNNLGSLYDKPEKRNTRYHQFLPSFSAKYQVDESNQTFYNVTRNMRTPPNYVLYNKGDSVSLKSELSWNQELGWRYTEDDMALSATLFYISFKDRQVSTTDSAGDYMVLNVGSVDNKGLELEWSGLLPHNFNYYASYTYTKSEQQDDLLSKNVLLPTSGKQLANVPENMFNLVFGYDDSRFYANAAGKYVGSFYGDLTNKEKIEGRTVFDLNAGIYLPVDKKVIKSATLRFSMLNVFDKEYLSSARTVAFNSVPVNGLAPSTAFYNVGEERTAMVSLEANF
>CP027762.1|AZF62078.1|1210419_1210770_-|glutaredoxin-family-protein
MLGGVFKKVLLVLLVVVVIQNWGKIERLFNPSQVVSEQVRTSARVVLYSTEWCGYCKQIRRFLDQKGIPYQALDIEKDAQARTTYEALGGGGIPFVDVNGTLIREFNPEAIMAALK

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Crispr_ID: CP027762_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027762_3

2008064-2008159

Orphan

Consensus_repeat	Method
GCCGCCCAGTATCTTGCTGACCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027762_3

>merge|CP027762|3|2008064-2008159|CRISPRCasFinder
GCCGCCCAGTATCTTGCTGACCCAGCACATTCCAACTGTGGGAGCGGGCTTGCCTGCGATTGCGGTCTCCGGGCCGCCCAGTATTTTGCTGACCCA

>CP027762|3|3|2008064-2008159|CRISPRCasFinder
GCCGCCCAGTATCTTGCTGACCCA	GCACATTCCAACTGTGGGAGCGGGCTTGCCTGCGATTGCGGTCTCCGG
GCCGCCCAGTATTTTGCTGACCCA

Protein	Signature genes	Signature genes Name	Protein_function
CP027762.1\|AZF62857.1\|2012412_2012781_+\|hypothetical-protein	unknown	unknown	unknown
CP027762.1\|AZF62859.1\|2014756_2015608_+\|Glycine-betaine/L-proline-ABC-transporter,-glycine-betaine/L-proline--binding/permease-protein	unknown	unknown	gnl\|CDD\|270357
CP027762.1\|AZF62849.1\|2000401_2003464_+\|Multidrug-efflux-system-MdtABC-TolC,-inner-membrane-proton/drug-antiporter-MdtB-(RND-type)	unknown	unknown	gnl\|CDD\|182501
CP027762.1\|AZF62860.1\|2015825_2016137_+\|Inner-membrane-protein-YjcH	unknown	unknown	gnl\|CDD\|225704
CP027762.1\|AZF62847.1\|1998413_1999019_-\|Transcriptional-regulator,-AcrR-family	unknown	unknown	gnl\|CDD\|312013
CP027762.1\|AZF62855.1\|2010878_2012177_-\|Surface-lipoprotein	unknown	unknown	unknown
CP027762.1\|AZF62858.1\|2012871_2014425_-\|putative-glucosyl-transferase	unknown	unknown	gnl\|CDD\|227625
CP027762.1\|AZF62854.1\|2010097_2010886_-\|Outer-membrane-phospholipid-binding-lipoprotein-MlaA	unknown	unknown	gnl\|CDD\|377309
CP027762.1\|AZF62843.1\|1995154_1996930_-\|Glyoxylate-carboligase	unknown	unknown	gnl\|CDD\|183066
CP027762.1\|AZF62846.1\|1998217_1998346_-\|hypothetical-protein	unknown	unknown	unknown
CP027762.1\|AZF62844.1\|1997186_1997627_+\|GlcG-protein	unknown	unknown	gnl\|CDD\|225734
CP027762.1\|AZF62851.1\|2006590_2008003_+\|Efflux-transport-system,-outer-membrane-factor-(OMF)-lipoprotein	unknown	unknown	gnl\|CDD\|273830
CP027762.1\|AZF62856.1\|2012206_2012296_+\|hypothetical-protein	unknown	unknown	unknown
CP027762.1\|AZF62848.1\|1999260_2000388_+\|Multidrug-efflux-system-MdtABC-TolC,-membrane-fusion-component-MdtA	unknown	unknown	gnl\|CDD\|183194
CP027762.1\|AZF62861.1\|2016133_2017792_+\|Acetate-permease-ActP-(cation/acetate-symporter)	unknown	unknown	gnl\|CDD\|236495
CP027762.1\|AZF62852.1\|2008609_2009515_+\|Inner-membrane-protein-YedI	unknown	unknown	gnl\|CDD\|377542
CP027762.1\|AZF62842.1\|1994361_1995144_-\|Hydroxypyruvate-isomerase	unknown	unknown	gnl\|CDD\|163190
CP027762.1\|AZF62845.1\|1997744_1998203_-\|Transposase	unknown	unknown	gnl\|CDD\|376616
CP027762.1\|AZF62853.1\|2009661_2010033_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377540
CP027762.1\|AZF62850.1\|2003468_2006594_+\|Multidrug-efflux-system-MdtABC-TolC,-inner-membrane-proton/drug-antiporter-MdtC-(RND-type)	unknown	unknown	gnl\|CDD\|182589

Protein	Function_ID	Function_description	E-value
CP027762.1\|AZF62858.1\|2012871_2014425_-\|putative-glucosyl-transferase	gnl\|CDD\|227625	COG5309, COG5309, Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism].	3.79582e-48
CP027762.1\|AZF62849.1\|2000401_2003464_+\|Multidrug-efflux-system-MdtABC-TolC,-inner-membrane-proton/drug-antiporter-MdtB-(RND-type)	gnl\|CDD\|182501	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit.	0
CP027762.1\|AZF62853.1\|2009661_2010033_+\|hypothetical-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	7.95018e-09
CP027762.1\|AZF62859.1\|2014756_2015608_+\|Glycine-betaine/L-proline-ABC-transporter,-glycine-betaine/L-proline--binding/permease-protein	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.65763e-121
CP027762.1\|AZF62860.1\|2015825_2016137_+\|Inner-membrane-protein-YjcH	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	2.9181e-43
CP027762.1\|AZF62854.1\|2010097_2010886_-\|Outer-membrane-phospholipid-binding-lipoprotein-MlaA	gnl\|CDD\|377309	pfam04333, MlaA, MlaA lipoprotein. MlaA is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. MlaA is required for the intercellular spreading of Shigella flexneri. It is attached to the outer membrane by a lipid anchor.	2.74065e-90
CP027762.1\|AZF62843.1\|1995154_1996930_-\|Glyoxylate-carboligase	gnl\|CDD\|183066	PRK11269, PRK11269, glyoxylate carboligase; Provisional.	0
CP027762.1\|AZF62844.1\|1997186_1997627_+\|GlcG-protein	gnl\|CDD\|225734	COG3193, GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only].	6.30685e-34
CP027762.1\|AZF62851.1\|2006590_2008003_+\|Efflux-transport-system,-outer-membrane-factor-(OMF)-lipoprotein	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.86295e-94
CP027762.1\|AZF62848.1\|1999260_2000388_+\|Multidrug-efflux-system-MdtABC-TolC,-membrane-fusion-component-MdtA	gnl\|CDD\|183194	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit.	8.10239e-115
CP027762.1\|AZF62861.1\|2016133_2017792_+\|Acetate-permease-ActP-(cation/acetate-symporter)	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
CP027762.1\|AZF62852.1\|2008609_2009515_+\|Inner-membrane-protein-YedI	gnl\|CDD\|377542	pfam05661, DUF808, Protein of unknown function (DUF808). This family consists of several bacterial proteins of unknown function.	1.46248e-147
CP027762.1\|AZF62842.1\|1994361_1995144_-\|Hydroxypyruvate-isomerase	gnl\|CDD\|163190	TIGR03234, OH-pyruv-isom, hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.	2.80146e-158
CP027762.1\|AZF62845.1\|1997744_1998203_-\|Transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	3.46126e-07
CP027762.1\|AZF62847.1\|1998413_1999019_-\|Transcriptional-regulator,-AcrR-family	gnl\|CDD\|312013	pfam08362, TetR_C_3, YcdC-like protein, C-terminal region. This family comprises proteins that belong to the TetR family of transcriptional regulators. They bear particular similarity to YcdC, a putative HTH-containing protein. This family features the C-terminal region of these sequences, which does not include the helix-turn-helix.	7.3372e-81
CP027762.1\|AZF62850.1\|2003468_2006594_+\|Multidrug-efflux-system-MdtABC-TolC,-inner-membrane-proton/drug-antiporter-MdtC-(RND-type)	gnl\|CDD\|182589	PRK10614, PRK10614, multidrug efflux system subunit MdtC; Provisional.	0

>CP027762.1|AZF62851.1|2006590_2008003_+|Efflux-transport-system,-outer-membrane-factor-(OMF)-lipoprotein
MKLRYSVLLASLVLGGCMVGPDYQKPAMELPQSFKEGAQWQRAVSNPQGALDSQWWLAYQDPVLNDLVARSAKANQSIIAAEAAYRLAQAQVASSRAGLWPTVGVGLSGSRGEGGDGSTSSTTTASTGVKNSVSATLTASWEPDLWGEVRRGIESSQATAQQSDALLAGVRLSISSSVASNYLALRQMDIDVRLLQQQQSINQQLLDMIQAQFTQGVATNDQLLVAQDQLTTSIAGLQTSLRDREQYEHALAVLVGVAPSEFSIAPRTDFAFVVPRPPLTLASTLLQRRPDVVAAERSAAAANAKIGVAEAAFFPTLDLTAQLGYRGSALGGLFSLPNRIWTLGPALAETIFDGGAREAAVKQAEASYDQIAANYRGTVLGALQNVEDNLSAINHLQTQADAFQQVYARNQQLFGSQEAQLRAGTVSQETVLTQQLVLLQAEQNLRDTQGQLSQGSVALIQSLGGGWQAP
>CP027762.1|AZF62850.1|2003468_2006594_+|Multidrug-efflux-system-MdtABC-TolC,-inner-membrane-proton/drug-antiporter-MdtC-(RND-type)
MNLSAPFIHRPIATTLLAAGLALFGVLAFNLLPVAPLPEVDFPTISVSASLPGADPTTVASSVATPLERQFGQIAGVTQMTSASSLGSTRITLQFDLSRDIDGAARDVQAAINAARSNLPSDLSGNPTYRKVNPADSPILIISLTSDSATPGQMYDAASTVLEQRLLQTTGVGDVTVGGGALPAVRIELNPDRLNQYGVSLEQVRQVISASNANLPKGNVAVGDRSYGIGANDQLLDSNDYGPLVVKAKNGDLIHIADLGYVREDVQDLRNFGLSNGKPAVLLVVFKQPGANVIDTVDAVKASLPFLQSSIPASIKLNLLMDRTTTIRASLHDVEVTLLASILLVTLVTFGFFRDWRSTLVPAVVVPLSLLGTFGAMYFLGYSLNNLSLMALTISTGFVVDDAIVVVENIMRHLERGKTRVEAALAGAQEVGFTVLTISVSLVAVFIPLLLMGGIVGRLFREFSVSLSVAIVISMVISLTVTPMLASVLLRAPKEIREGNEHPDSRFHRFYDRTLGWVIEHSILMGGVTVLVIVLAGVLYVLVPKGFFPQEDTGRLQGSIIAAQSISYGAMQKDFTEINHKVMQNPNVQTAAGFVGGGGGGGGAVNSAQLFVLLKPIDQRKDSAVDVIGQIRRSLGDLPGTKLFLQAAQDITVGGRQSGAQYQYTLTADDQQSLDEWVPKVVEVLHTLPQLTDLNTDQQDNSLLANVSINRDTAARLGVGMSAVDQTLYDAFGQRQVSTLYRAANQYHVVMEIAPQYWTDPQALEGIYVPAGNTAVAAKGTTVAPNLTTPTTLVPLSALADNSISRTAISISHQGTFPAVTVSFNLAPGTSIGQATALVEDAVKQLRMPASVTGQFAGTAQVFQSSVASEPLLIVAALLSVYIVLGILYENLMHPLTILSTLPSAGVGALIALLLTGTELSIIALVGVILLIGIVKKNAIMMIDFAITERREFGLTAKEAIRRACLIRFRPIMMTTLAAILGALPLVLGSGYGSELRRPLGIAIIGGLLLSQVLTLYTTPVIYLWLDRASQRLGRHKEARS
>CP027762.1|AZF62849.1|2000401_2003464_+|Multidrug-efflux-system-MdtABC-TolC,-inner-membrane-proton/drug-antiporter-MdtB-(RND-type)
MNISRPFIERPVATTLMMVAVLLLGLLGYHLLSVSALPEVDYPTIQVFTQYPGASPDVVSSSITAPLERQLGEMPGLKSMNSTSSDGASVVTLQFDLSLSLDVAEQEVQAAINAAGTFLPANLPYPPVYSKVNPADAPVLTLSLTSDVLPLTKVEDLADTRLAQKISQITGVGLVTISGGQRPAVRVEANTSALNSLGLSLDDLRTSLGTANVNQAKGNIDGKFQAYSIGANDQLQSAEEYRDLVIAYKNGAPIRLSQIASSTQGAENPRQAAWTNDTPSIVLNIQRQPGANVIEVVDRVQQLLPKLRASLPGTLKVAVLTDRTQTIRASVTDVQYELGLAILLVVIVIFIFLRNIAATIIPAVTIPLTLIGTLAVAYALGFSLNNLTLMALTIAIGFVVDDAIVMIENITRYLEAGDTPLQAALKGAEQIGFTIISLSIALIAVMIPLLFMGDVVGRLFREFAMTVAVTIVISAVISLTLTPMMCARMLKSKHEERRPDFFDRINNHYVRGLDWVLAHRTLTLISVVLTAALTLFTLVIMPKGFFPDQDTGLIQGISQASPTISFQQMQVEQQRLAARILKDPAVLSLSSFVGIDQTNPTINQGNLLINLKPRGERDSSTEVIRRLADANADDAGIRLYLHSVQDLTLDATVSTTSYRLGLQATDPDELEQWTTKLLAAIKQDPMFTDVQSQAMQFGNQIKLTFDRATASRLGITPQAIDDVLYDAFGQRQVSTIYTQLNQYHVVIATDHPPRNLPDLLTGLYVDIPGGGVAPLSSMATLEVVRSPVTINRLGQFPYADVSFNLAPGQTLGAAVTRLQDIEAKVGLPLSVQANLEGAAATFQASLSNQVFLVLAAIVVVYLMLGILYESFVHPVTILSTLLSAALGALLALLVTGTQFDIIGLIGIVLLIGIVMKNGIMMVDFALELLREGGLSPVEAIRQAAELRFRPILMTSMASLFGAVPLALGTGIGSELRHPLGIAIIGGLLLSQLLTLFSTPVIFLAMHGLGQRFSRRPVALE
>CP027762.1|AZF62848.1|1999260_2000388_+|Multidrug-efflux-system-MdtABC-TolC,-membrane-fusion-component-MdtA
MEKSRRRTFAWVVGALLVVALLIGLGMHLFGGAHKGKPVSPGEPVAAVPVALQDVPVYIDALGTVTPTRSVTVVTQVDGILSSVEFKEGQHVSKGQVIARIDDRALKAQLAVAKGTLAHDQAVLSNAQRDLARYRDLVKAGSTSQQTLDTQASLVQQQQGTVAADQGNVQNLEVQLSYCTITSPVDGVVGLRLVDPGNYVTTASTTGIVVITQMNPATVVFAVPEDDLGAINQAMSHGSVTVLAYDRNKKSLLATGALLALDNEVNTSTGTIKVKAQFDDSGNALFPNQFVNARLKADTLSQIAVVPTRAIQHGSKGDFVFVVNGNKASLQTIKTGPSTGDVSAVLDNGVKAGEQVITEGADKLDDGSAVKVVAQ
>CP027762.1|AZF62847.1|1998413_1999019_-|Transcriptional-regulator,-AcrR-family
MSTIRERNKEMILRAASEEFADKGFAATKTSDIAAKAGLPKPNVYYYFKSKDNLYREVLESIIEPILAASTPFNPDGEPAVVLSNYIRSKIRISRDLPFASKVFASEIMHGAPHLSSQQVEQLNAQAKHNIDCIQSWVDRGLIAAIDPNHLMFSIWAATQTYADFDWQISAVTGKAKLDEADYEAAAQTIIRLVLKGCEPD
>CP027762.1|AZF62846.1|1998217_1998346_-|hypothetical-protein
MYERRKANVGAGLLAKAPSQTHPANSLSISIRHQDLASQNTL
>CP027762.1|AZF62845.1|1997744_1998203_-|Transposase
MPDHATSHRLRIGRFSESNRTYLITTNTHERVPIFSDFHLGRLVVWQFRLAQYQGLANSLAWVVMPDHFHWLIELKKGSLGDLLCQVKSKSTRTVNGATGRKGRLWQTSFHDRALRKEDDLVKMARYVVANPLRAGLVKRIGDYPLWDAVWV
>CP027762.1|AZF62844.1|1997186_1997627_+|GlcG-protein
MSALTLKLATQLASQALTAGRTICAAPLTIAVLDSGGHLVTLQREDGASLLRPQIAIGKAWGAIALGKGSRLLALDAQQRPAFIAALNSLGQGSVVPAPGGVLIRDQAGAVLGAIGISGDTSDIDEQCAITAIEGVGLLADAGVSA
>CP027762.1|AZF62843.1|1995154_1996930_-|Glyoxylate-carboligase
MSKMRAIEAAVLVMRREGVDTAFGIPGAAINPLYSALQKVGGIDHVLARHVEGASHMAEGYTRTKAGNIGVCIGTSGPAGTDMVTGLYSASADSIPILCITGQAPRARMHKEDFQAVDITSIVKPVTKWATTVLEPGQVPYAFQKAFYEMRSGRPGPVLIDLPFDVQMAEIEFDIDAYQPLPLAKPLATRIQVEKALALLEQAERPLLVSGGGVINADASELLVEFAELTGIPVIPTLMGWGTIPDDHPQMVGMVGLQTSHRYGNATLLKSDVVLGIGNRWANRHTGSVEVYTEGRKFIHVDIEPTQIGRVFTPDLGIVSDAGSALTMFIEVAREWKAAGKLKDRSAWLHDCQERKATLHRKTHFDNVPVKPQRVYEEMNQVFGKDTCYVSTIGLSQIAGAQFLHVYKPRHWINCGQAGPLGWTIPAALGVVKADPSRKVVALSGDYDFQFMIEELAVGAQFKLPYIHVVVNNSYLGLIRQAQRGFEMDYCVQLSFDNLNAPELNGYGVDHVAVAEGLGCKALRVFEPGQIAPALRKAKEMIEEFKVPVIVEIILERVTNISMGTEINAVNEFEDLALVGNDAPTAISLLD
>CP027762.1|AZF62842.1|1994361_1995144_-|Hydroxypyruvate-isomerase
MPRFAANLSMLFTEQDFLARFKAAADAGFQGVEYLFPYEFSSAEIKAHLDANGLTQVLFNLPAGDWAKGERGVACHPDRVEEFRAGVKLAIAYAQVLGNTQINCLAGIRPQGVDDQTVEKTFVANLKYAADKLQAAGIKLVMEMINTRDIPGFYLNNTAQALSIREQVGSANLFLQYDIYHMQIMEGDLARTMAAHLDEINHIQLADNPGRNEPGTGEINYRFLFEHLDRIGYTGWVGCEYKPLTTTEAGLGWLKSHNAI
>CP027762.1|AZF62852.1|2008609_2009515_+|Inner-membrane-protein-YedI
MAGSSLLVLIDDIAAVLDDVALMTKMAAKKTAGVLGDDLALNAQQVSGVRAEREIPVVWAVAKGSFLNKLILVPAALLISAFAPWAVTPLLMLGGAYLCFEGFEKLAHSFIHKRTEEQAHLVEAVADPATDLVAFEKDKIKGAIRTDFILSAEIIAITLGTVADAPLMQQVIVLSGIAIVMTIGVYGLVAGIVKLDDLGLWLTQKPGQAARSIGGAILRAAPYMMKSLSVIGTAAMFMVGGGILTHGVPVVHHWIEVVSQSTGGLAWLMPTLLNAVAGIIAGAVALVVVQIFEKIWHAVRH
>CP027762.1|AZF62853.1|2009661_2010033_+|hypothetical-protein
MNWYLDALKKSFVFEGRSHRRAFWYFQLVDKVIEGAYIAICWWFFEEWIKTTLGIGLGYLLLTLPARVTLLCRRLTDNGISQVNSFWTLLPFVGSLFWVGFGLWPGAKEQSASRSVDTSRTAE
>CP027762.1|AZF62854.1|2010097_2010886_-|Outer-membrane-phospholipid-binding-lipoprotein-MlaA
MAKYLLLLAALMCAGVANADNSKAHEPVKVDSDGFKEPLTKLKFNPGLDQREFERSSLTALNVYDPLESWNRRVYHFNYRFDQWVFLPVVDGYRYVTPSFLRTGVSNFFNNLGDVPNLLNSLLQLKGHRSLETTGRLLLNTTIGVAGLWDPATAMGLPRQSEDFGQTLGFYGVPGGAYLVLPIFGPSNLRDTTGLIVDYGAETEINFLNVSKVSENHPEIWALRAVDKRYQTSFRYGQMNSPFEYEKVRYIYTESRKLQIAE
>CP027762.1|AZF62855.1|2010878_2012177_-|Surface-lipoprotein
MLRSLRCAALLGSLFLSASALAVDIDQASYGYPLTNPFEATIATTPPDLRPKLPTDDEINQSDYTLNMRPEREFSLPDNFWAVKKLTYRIAKQDHAAPLIFLIAGTGARFDSSINEYLKKLYYQAGYHVVQLSSPTSFDFISAASRFATPGITQEDAEDMYRVMQAVRAQNASLPVTDFYLTGYSLGALDAAFVSKLDETRRSFNFKKVLLLNPPVNLYTSITNLDKLVQTEVKGINNTTTFYELVLSKLTRYFQQKGYIDLNDALLYDFQNSKQHLTNEQMAMLIGTSFRFSAADIAFTSDLINRRGLIIPPKYPITEGTSLTPFLKRALQCDFDCYLTEQVIPMWRARSDGGSLLQLVDQVSLYALKDYLHSSPKIAVMHNADDVILGPGDLGFLRKTFGDRLTVYPLGGHCGNLNYRVNADAMLEFFRG
>CP027762.1|AZF62856.1|2012206_2012296_+|hypothetical-protein
MKFAGYDHRVATEVPAFGTKSRKKATESG
>CP027762.1|AZF62857.1|2012412_2012781_+|hypothetical-protein
MSRRLPLILLLIALPLWLAASYGARYGFMEDGQWVGICADEASRWECQLRSNLGLMIHFKVLGWAALVTSVLGFFVPGRAGWGLAVLGMVFGLPALALYNTTFAVFAVVIAGLRLVRKPRAA
>CP027762.1|AZF62858.1|2012871_2014425_-|putative-glucosyl-transferase
MPATARFPALPYIFALILGVLALVGYWYGLGRPVVLPDVASASHKMQCASYTPFDKDQSPFDQPFKLRPERMDADLALLATRFECIRTYSMTGLEALPDLARKHGLKLMAGAWVSSDPVATEKEVAELIAAANANPDVVTSVIVGNEALLRKEVTAKQLVTLIHKVKSQIKQPVTYADVWEFWLKHPEIAPAVDFLTIHLLPYWEDDPSGIDQALKHVGDVRQTFGNQFAPKDVLIGETGWPSEGRQRETAVPSRVNEAKFMRGFVAMAEANGWHYNLIEAFDQPWKRASEGAVGGYWGLFDADRQDKGILAGPVSNVPYWPLWLGVGGIILLGTLVLGGRVRSTRAALMLPLLGAVAACSIGTWAELTRVTARFNDEWVWAGLLVVLNLLVLAHAALALSARDGWRERAFNWLEQRAGWLVAIAGFAGAVMMLALVFDPRYRSFPSAALVLPALVYLVRPVTGPRREIALLAFIIGAGIAPQLYREGLQNQQAWGWAIVSVLMVVALWRCLRVRKA
>CP027762.1|AZF62859.1|2014756_2015608_+|Glycine-betaine/L-proline-ABC-transporter,-glycine-betaine/L-proline--binding/permease-protein
MKMRRLLGAAATLVVAMSSTLANADSKTLSIGYVDGWSDSVATTHVAAEVIKEKLGYDVKLQAVATGIMWQGVATGKLDAMLSAWLPVTHGEYWAKNKDKVVDYGPNFKDAKIGLIVPEYVKAKSIEDLKTDTTFKNKIVGIDAGSGVMLKTDEAIKAYGLDYKLQASSGAAMIAELTRAEDKQESIAVTGWVPHWMFAKWKLRFLDDPKGIYGAAETVNSIGSKGLEKKAPEVAAFLKKFQWASKDEIGEVMLAIQEGAKPDAAAKDWVAKHPERVAEWIGK
>CP027762.1|AZF62860.1|2015825_2016137_+|Inner-membrane-protein-YjcH
MNDSIYLSIQNSPRFKELVRKRERFAWILSAIMLGLYSAFILLIAYGPQVLGAKLSPGSSITWGIPIGVGLIVSAFILTGIYVRRANGEFDDLNNAILKEAAQ
>CP027762.1|AZF62861.1|2016133_2017792_+|Acetate-permease-ActP-(cation/acetate-symporter)
MIRRLLAVGGASIFAPAVWAADALTGEVHKQPLNIAAILMFVAFVGATLCITYWASKRNKSAADYYAAGGKITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLGQTQIRSLSACGSLVVVAFYLIAQMVGAGKLIQLLFGLDYHVAVILVGILMCLYVLFGGMLATTWVQIIKAVLLLSGASFMALMVMKHVNFDFNTLFAEAIKVHPKGEAIMSPGGLVKDPISAFSLGLALMFGTAGLPHILMRFFTVSDAKEARKSVLYATGFIGYFYILTFIIGFGAILLVSTNPAFKDAAGALLGGNNMAAVHLANAVGGSIFLGFISAVAFATILAVVAGLTLAGASAVSHDLYASVIKKGKANEKDEIRVSKITTIALAVLAIGLGILFESQNIAFMVGLAFSIAASCNFPVLLLSMYWKNLTTRGAMIGGWLGLISAVGLMILGPTIWVSILHHEKAIFPYEYPALFSMIIAFIGIWFFSITDKSAAAEKERALYFPQFVRSQTGLGASGAVNH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP027762_4	4.18\|3867341\|25\|CP027762\|CRISPRCasFinder	3867341-3867365	25	CP027762.1	3867629-3867653	0	1.0
CP027762_4	4.19\|3867389\|25\|CP027762\|CRISPRCasFinder	3867389-3867413	25	CP027762.1	3867533-3867557	2	0.92

1. spacer 4.18|3867341|25|CP027762|CRISPRCasFinder matches to position: 3867629-3867653, mismatch: 0, identity: 1.0

cgagctttcgccgcctgccgtttgc	CRISPR spacer
cgagctttcgccgcctgccgtttgc	Protospacer
*************************

2. spacer 4.19|3867389|25|CP027762|CRISPRCasFinder matches to position: 3867533-3867557, mismatch: 2, identity: 0.92

cgaactgtcggagccggcggtgccg	CRISPR spacer
cgaactgtcggagcctgcagtgccg	Protospacer
*************** **.******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP027762_4	4.17\|3867293\|25\|CP027762\|CRISPRCasFinder	3867293-3867317	25	NC_010679	Paraburkholderia phytofirmans PsJN plasmid pBPHYT01, complete sequence	106734-106758	3	0.88
CP027762_4	4.10\|3866957\|25\|CP027762\|CRISPRCasFinder	3866957-3866981	25	NZ_CP024924	Sphingomonas sp. Cra20 plasmid unnamed, complete sequence	49354-49378	4	0.84
CP027762_4	4.13\|3867101\|25\|CP027762\|CRISPRCasFinder	3867101-3867125	25	NZ_CP024924	Sphingomonas sp. Cra20 plasmid unnamed, complete sequence	49354-49378	4	0.84
CP027762_4	4.15\|3867197\|25\|CP027762\|CRISPRCasFinder	3867197-3867221	25	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	496994-497018	4	0.84
CP027762_4	4.16\|3867245\|25\|CP027762\|CRISPRCasFinder	3867245-3867269	25	NZ_CP054033	Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence	93981-94005	4	0.84
CP027762_4	4.13\|3867101\|25\|CP027762\|CRISPRCasFinder	3867101-3867125	25	NZ_CP021355	Rhodococcus sp. S2-17 plasmid pRB98, complete sequence	948871-948895	5	0.8
CP027762_4	4.15\|3867197\|25\|CP027762\|CRISPRCasFinder	3867197-3867221	25	NC_003064	Agrobacterium fabrum str. C58 plasmid At, complete sequence	280850-280874	5	0.8
CP027762_4	4.15\|3867197\|25\|CP027762\|CRISPRCasFinder	3867197-3867221	25	CP047390	Agrobacterium sp. CGMCC 11546 plasmid pB	221431-221455	5	0.8
CP027762_4	4.10\|3866957\|25\|CP027762\|CRISPRCasFinder	3866957-3866981	25	NZ_CP021355	Rhodococcus sp. S2-17 plasmid pRB98, complete sequence	948871-948895	6	0.76
CP027762_4	4.18\|3867341\|25\|CP027762\|CRISPRCasFinder	3867341-3867365	25	NZ_CP047178	Rathayibacter sp. VKM Ac-2759 plasmid unnamed2, complete sequence	38326-38350	6	0.76
CP027762_4	4.19\|3867389\|25\|CP027762\|CRISPRCasFinder	3867389-3867413	25	KY940711	Bradyrhizobium phage BDU-MI-1, complete genome	63520-63544	6	0.76
CP027762_1	1.1\|1199670\|29\|CP027762\|CRISPRCasFinder	1199670-1199698	29	NZ_CP049142	Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_1, complete sequence	97764-97792	7	0.759
CP027762_1	1.1\|1199670\|29\|CP027762\|CRISPRCasFinder	1199670-1199698	29	MH321493	Salmonella phage Skate, complete genome	4837-4865	7	0.759

1. spacer 4.17|3867293|25|CP027762|CRISPRCasFinder matches to NC_010679 (Paraburkholderia phytofirmans PsJN plasmid pBPHYT01, complete sequence) position: , mismatch: 3, identity: 0.88

atcactgccttcttgagccgtttgg	CRISPR spacer
atcccagccttcttgagccgtttgc	Protospacer
*** * ******************

2. spacer 4.10|3866957|25|CP027762|CRISPRCasFinder matches to NZ_CP024924 (Sphingomonas sp. Cra20 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.84

tgagctgtcggaacccgcagtgctt	CRISPR spacer
cgagctgtcggaacccgaagttctc	Protospacer
.**************** *** **.

3. spacer 4.13|3867101|25|CP027762|CRISPRCasFinder matches to NZ_CP024924 (Sphingomonas sp. Cra20 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.84

tgagctgtcggaacccgcagtgctg	CRISPR spacer
cgagctgtcggaacccgaagttctc	Protospacer
.**************** *** **

4. spacer 4.15|3867197|25|CP027762|CRISPRCasFinder matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 4, identity: 0.84

agagctttcaccgccggcagtttgc	CRISPR spacer
cggtctttgaccgccggcagtttgc	Protospacer
 *. **** ****************

5. spacer 4.16|3867245|25|CP027762|CRISPRCasFinder matches to NZ_CP054033 (Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence) position: , mismatch: 4, identity: 0.84

caaactgtcggagccggcggtgctc	CRISPR spacer
gaggctgccggagccggcggtgctc	Protospacer
 *..***.*****************

6. spacer 4.13|3867101|25|CP027762|CRISPRCasFinder matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 5, identity: 0.8

tgagctgtcggaacccgcagtgctg	CRISPR spacer
accaatgtcggaacccgcagtgctg	Protospacer
   . ********************

7. spacer 4.15|3867197|25|CP027762|CRISPRCasFinder matches to NC_003064 (Agrobacterium fabrum str. C58 plasmid At, complete sequence) position: , mismatch: 5, identity: 0.8

agagctttcaccgccggcagtttgc	CRISPR spacer
tctcctttcaccgccggcagttcgc	Protospacer
    ******************.**

8. spacer 4.15|3867197|25|CP027762|CRISPRCasFinder matches to CP047390 (Agrobacterium sp. CGMCC 11546 plasmid pB) position: , mismatch: 5, identity: 0.8

agagctttcaccgccggcagtttgc	CRISPR spacer
tctcctttcaccgccggcagttcgc	Protospacer
    ******************.**

9. spacer 4.10|3866957|25|CP027762|CRISPRCasFinder matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 6, identity: 0.76

tgagctgtcggaacccgcagtgctt	CRISPR spacer
accaatgtcggaacccgcagtgctg	Protospacer
   . *******************

10. spacer 4.18|3867341|25|CP027762|CRISPRCasFinder matches to NZ_CP047178 (Rathayibacter sp. VKM Ac-2759 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.76

cgagctttcgccgcctgccgtttgc	CRISPR spacer
cgagctttcgccgcctgccacagtt	Protospacer
*******************..   .

11. spacer 4.19|3867389|25|CP027762|CRISPRCasFinder matches to KY940711 (Bradyrhizobium phage BDU-MI-1, complete genome) position: , mismatch: 6, identity: 0.76

cgaactgtcggagccggcggtgccg	CRISPR spacer
gtcgttgtcggagccggcggtgccc	Protospacer
   ..*******************

12. spacer 1.1|1199670|29|CP027762|CRISPRCasFinder matches to NZ_CP049142 (Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_1, complete sequence) position: , mismatch: 7, identity: 0.759

gatttgtacttgtcgcgatgcttttgtga	CRISPR spacer
gctttgtactgggcgcgatgcttttccag	Protospacer
* ******** * ************ ...

13. spacer 1.1|1199670|29|CP027762|CRISPRCasFinder matches to MH321493 (Salmonella phage Skate, complete genome) position: , mismatch: 7, identity: 0.759

gatttgtacttgtcgcgatgcttttgtga	CRISPR spacer
taaatgtacttgtcaccatgcttttgtct	Protospacer
 *  **********.* **********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1315031 : 1372592

Pseudomonas_phage(34.29%)

tail,plate,tRNA,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF62159.1\|1315031_1315502_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
AZF62160.1\|1315650_1316760_-	Ferric iron ABC transporter, ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.2e-20	37.7
AZF62161.1\|1316756_1317680_-	Ornithine carbamoyltransferase	A0A1J0F9B8	Only_Syngen_Nebraska_virus	2.7e-18	27.7
AZF62162.1\|1318100_1320209_+	Formate dehydrogenase-O, major subunit	NA	NA	NA	NA
AZF62163.1\|1320295_1320634_+	Glutaredoxin-related protein	NA	NA	NA	NA
AZF62164.1\|1320736_1321207_-	Bacterioferritin	NA	NA	NA	NA
AZF62165.1\|1321867_1322470_+	Alkyl hydroperoxide reductase subunit C-like protein	NA	NA	NA	NA
AZF62166.1\|1322806_1323478_-	Ribonuclease T	NA	NA	NA	NA
AZF62167.1\|1323474_1324521_-	Dihydroorotase	NA	NA	NA	NA
AZF62168.1\|1324677_1325586_+	outer membrane protein, OmpA family	NA	NA	NA	NA
AZF62169.1\|1325715_1326933_+	Argininosuccinate synthase	NA	NA	NA	NA
AZF62170.1\|1327240_1327387_+	hypothetical protein	NA	NA	NA	NA
AZF62171.1\|1327564_1328197_+	Two-component transcriptional response regulator, LuxR family	NA	NA	NA	NA
AZF62172.1\|1328266_1328449_-	hypothetical protein	NA	NA	NA	NA
AZF62173.1\|1328556_1329195_-	Endonuclease III	NA	NA	NA	NA
AZF62174.1\|1329293_1330457_-	Electron transport complex protein RnfB	NA	NA	NA	NA
AZF62175.1\|1330697_1332749_-\|tRNA	Methionyl-tRNA synthetase	NA	NA	NA	NA
AZF62176.1\|1332921_1334016_+	[4Fe-4S] cluster assembly scaffold protein Mrp (ApbC)	NA	NA	NA	NA
AZF62177.1\|1334514_1334838_-	4Fe-4S dicluster domain	NA	NA	NA	NA
AZF62178.1\|1334980_1337572_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.5e-29	22.0
AZF62179.1\|1337947_1338229_-	hypothetical protein	NA	NA	NA	NA
AZF62180.1\|1339004_1340627_-	Methyl-accepting chemotaxis sensor/transducer protein	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-23	31.8
AZF62181.1\|1340937_1341672_+	Transcriptional regulator	B5TK58	Pseudomonas_phage	6.3e-119	87.7
AZF62182.1\|1341821_1341980_+	hypothetical protein	NA	NA	NA	NA
AZF62183.1\|1342268_1342607_+	Holin	B5TK61	Pseudomonas_phage	6.2e-45	81.8
AZF62184.1\|1342630_1343146_+	hypothetical protein	NA	NA	NA	NA
AZF62185.1\|1343149_1343761_+\|plate	Baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	5.0e-45	52.3
AZF62186.1\|1343770_1344103_+\|plate	Baseplate assembly protein W	A0A2H4JI46	uncultured_Caudovirales_phage	4.7e-37	69.1
AZF62187.1\|1344099_1345095_+\|plate	Phage-related baseplate assembly protein	A0A2H4JC04	uncultured_Caudovirales_phage	2.0e-112	63.2
AZF62188.1\|1345091_1345721_+	Tail protein I	A0A2H4JDK0	uncultured_Caudovirales_phage	1.7e-43	52.8
AZF62189.1\|1345721_1347179_+\|tail	Prophage long tail fiber protein	A0A077K818	Ralstonia_phage	2.0e-55	37.3
AZF62190.1\|1347180_1347615_+\|tail	Phage tail fiber assembly protein	Q9ZXK5	Pseudomonas_virus	1.4e-20	43.2
AZF62191.1\|1347701_1347875_+	hypothetical protein	NA	NA	NA	NA
AZF62192.1\|1347877_1349044_+\|tail	Major tail sheath protein	B0ZSG8	Halomonas_phage	7.9e-124	56.4
AZF62193.1\|1349043_1349550_+	hypothetical protein	Q6R4W3	Vibrio_virus	7.1e-21	33.9
AZF62194.1\|1349732_1350305_+	hypothetical protein	B0ZSH0	Halomonas_phage	1.6e-29	39.8
AZF62195.1\|1350313_1350427_+	hypothetical protein	NA	NA	NA	NA
AZF62196.1\|1350432_1352376_+\|tail	Phage tail length tape-measure protein	NA	NA	NA	NA
AZF62197.1\|1352375_1352759_+\|tail	Unclassified tail protein	B0ZSH2	Halomonas_phage	2.0e-36	60.6
AZF62198.1\|1352751_1352964_+\|tail	P2-like prophage tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	3.1e-18	62.9
AZF62199.1\|1352973_1353984_+\|tail	Phage tail protein D	A0A2H4JH05	uncultured_Caudovirales_phage	1.7e-98	54.8
AZF62200.1\|1354059_1354257_+	hypothetical protein	NA	NA	NA	NA
AZF62201.1\|1354338_1354830_+	Acyl-CoA dehydrogenase	H2BDC0	Pseudomonas_virus	7.9e-49	61.6
AZF62202.1\|1354838_1355189_+	hypothetical protein	NA	NA	NA	NA
AZF62203.1\|1355230_1355473_+	Phage protein	A0A0U4J8S9	Pseudomonas_phage	2.0e-13	48.8
AZF62204.1\|1355536_1356766_+\|tail	Phage tail length tape-measure protein 1	A0A0S2SYD9	Pseudomonas_phage	2.0e-16	30.1
AZF62205.1\|1356794_1357133_+\|tail	Phage minor tail protein	K7PHJ6	Enterobacteria_phage	2.5e-30	55.4
AZF62206.1\|1357192_1357876_+\|tail	Phage minor tail protein	A0A2I6PIA7	Pseudomonas_phage	6.1e-84	64.3
AZF62207.1\|1357878_1358652_+\|tail	Phage tail assembly protein	A0A2I6PI52	Pseudomonas_phage	7.0e-84	55.3
AZF62208.1\|1358685_1359312_+\|tail	Phage tail assembly protein I	A0A2I6PI69	Pseudomonas_phage	1.2e-46	48.0
AZF62209.1\|1359343_1359952_+	Phage protein	Q8W6T1	Burkholderia_virus	3.1e-39	45.9
AZF62210.1\|1360011_1363971_+\|tail	Phage tail fiber protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	2.6e-275	47.6
AZF62211.1\|1364126_1364297_+	hypothetical protein	NA	NA	NA	NA
AZF62212.1\|1364293_1364977_+	hypothetical protein	NA	NA	NA	NA
AZF62213.1\|1365083_1366112_+	phage protein	A0A1B0VMK1	Pseudomonas_phage	2.1e-11	43.1
AZF62214.1\|1366114_1366441_+	hypothetical protein	NA	NA	NA	NA
AZF62215.1\|1366507_1367611_+	hypothetical protein	A0A1B0VMK1	Pseudomonas_phage	8.9e-08	56.4
AZF62216.1\|1367610_1367931_+	hypothetical protein	NA	NA	NA	NA
AZF62217.1\|1367920_1368193_+	hypothetical protein	NA	NA	NA	NA
AZF62218.1\|1368262_1369348_+	hypothetical protein	A0A1B0VMK1	Pseudomonas_phage	1.6e-14	26.2
AZF62219.1\|1369347_1369677_+	hypothetical protein	A0A2D1GNF5	Pseudomonas_phage	4.1e-25	56.3
AZF62220.1\|1369663_1369873_+	hypothetical protein	NA	NA	NA	NA
AZF62221.1\|1369929_1370355_+\|capsid	Phage capsid and scaffold	A0A2H4J6R1	uncultured_Caudovirales_phage	2.3e-60	79.3
AZF62222.1\|1370387_1370552_+	hypothetical protein	NA	NA	NA	NA
AZF62223.1\|1370733_1370868_+	hypothetical protein	A0A2H4IZW4	uncultured_Caudovirales_phage	1.8e-11	77.3
AZF62224.1\|1370949_1371450_+	Nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	2.0e-71	84.3
AZF62225.1\|1371533_1372592_+	RecA protein	A0A0S2MVG1	Bacillus_phage	2.4e-111	62.4

DBSCAN-SWA_2

1485257 : 1490246

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF62330.1\|1485257_1486007_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.1e-65	51.0
AZF62331.1\|1486006_1486684_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.1e-43	53.1
AZF62332.1\|1486893_1487730_+	Murein hydrolase activator NlpD	A0A0S2SXL7	Bacillus_phage	8.2e-06	33.3
AZF62333.1\|1487836_1488847_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.3e-34	36.2
AZF62334.1\|1489080_1489290_-	Cold shock protein of CSP family	Q9AZD3	Lactococcus_phage	2.2e-16	66.7
AZF62335.1\|1489679_1490246_+	Deoxycytidine triphosphate deaminase	S5VM63	Pseudomonas_phage	4.8e-74	73.3

DBSCAN-SWA_3

1739734 : 1806502

Pseudomonas_virus(45.65%)

holin,plate,terminase,protease,capsid,head,integrase,tail,tRNA

attL 1767042:1767058|attR 1778992:1779008

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF62579.1\|1739734_1740343_-\|protease	SOS-response repressor and protease LexA	A0A2H4JG58	uncultured_Caudovirales_phage	5.6e-12	53.8
AZF62580.1\|1740606_1741314_+	putative transcriptional regulator for fatty acid degradation FadQ, TetR family	NA	NA	NA	NA
AZF62581.1\|1741458_1742469_+	beta-N-acetylglucosaminidase	NA	NA	NA	NA
AZF62582.1\|1742570_1745261_-	DNA/RNA helicase, SNF2 family	V9XTV7	Choristoneura_murinana_nucleopolyhedrovirus	1.3e-49	30.8
AZF62583.1\|1745270_1745840_-	hypothetical protein	NA	NA	NA	NA
AZF62584.1\|1745851_1749301_-	Transcription-repair coupling factor	NA	NA	NA	NA
AZF62585.1\|1749641_1751105_+	NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
AZF62586.1\|1751269_1752568_-	putative MFS-type transporter	Q6JIH2	Burkholderia_virus	1.3e-69	38.8
AZF62587.1\|1752718_1753261_-	putative periplasmic protein	NA	NA	NA	NA
AZF62588.1\|1753496_1754891_+	Soluble pyridine nucleotide transhydrogenase	NA	NA	NA	NA
AZF62589.1\|1754933_1755656_-	Glycerophosphoryl diester phosphodiesterase	A0A292GJA3	Xanthomonas_phage	1.6e-05	36.5
AZF62590.1\|1755700_1756285_-	hypothetical protein	NA	NA	NA	NA
AZF62591.1\|1756268_1756442_-	hypothetical protein	NA	NA	NA	NA
AZF62592.1\|1756445_1757630_+	Lipoprotein releasing system transmembrane protein LolC	NA	NA	NA	NA
AZF62593.1\|1757622_1758321_+	Lipoprotein-releasing system ATP-binding protein LolD	G9BWD6	Planktothrix_phage	6.8e-38	41.6
AZF62594.1\|1758381_1759626_+	Lipoprotein releasing system transmembrane protein LolE	NA	NA	NA	NA
AZF62595.1\|1759741_1761103_-	Copper sensory histidine kinase CusS	NA	NA	NA	NA
AZF62596.1\|1761093_1761774_-	Copper-sensing two-component system response regulator CusR	W8CYM9	Bacillus_phage	7.3e-29	34.8
AZF62597.1\|1761930_1762452_+	Copper tolerance protein	NA	NA	NA	NA
AZF62598.1\|1762518_1763349_+	NADPH-dependent 7-cyano-7-deazaguanine reductase	A0A2I7SAX1	Vibrio_phage	1.8e-37	38.1
AZF62599.1\|1763485_1763752_-	Chromosome segregation ATPase	NA	NA	NA	NA
AZF62600.1\|1763862_1764471_-	Phosphonoacetaldehyde phosphonohydrolase-related protein	NA	NA	NA	NA
AZF62601.1\|1764667_1765357_+	Outer-membrane-phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
AZF62602.1\|1765417_1765714_-	hypothetical protein	NA	NA	NA	NA
AZF62603.1\|1765990_1767172_+	Serine phosphatase RsbU, regulator of sigma subunit	NA	NA	NA	NA
1767042:1767058	attL	NA	NA	NA	NA
AZF62604.1\|1767171_1767654_+	Serine-protein kinase RsbW	NA	NA	NA	NA
AZF62605.1\|1767856_1768783_-	Transaldolase	A0A127KNC6	Cyanophage	7.0e-14	34.8
AZF62606.1\|1769118_1770057_-\|tRNA	tRNA-dihydrouridine(20/20a) synthase	NA	NA	NA	NA
AZF62607.1\|1770232_1771384_+\|integrase	integrase family protein	L7TP61	Pseudomonas_virus	7.6e-135	63.3
AZF62608.1\|1771644_1771896_-	hypothetical protein	NA	NA	NA	NA
AZF62609.1\|1771899_1772160_-	hypothetical protein	NA	NA	NA	NA
AZF62610.1\|1772218_1772530_-	hypothetical protein	NA	NA	NA	NA
AZF62611.1\|1772592_1775406_-	Phage protein	A0A2H4J936	uncultured_Caudovirales_phage	0.0e+00	61.8
AZF62612.1\|1775402_1775648_-	hypothetical protein	Q9ZXI9	Pseudomonas_virus	6.7e-17	56.5
AZF62613.1\|1775718_1776093_-	hypothetical protein	NA	NA	NA	NA
AZF62614.1\|1776089_1776392_-	Phage transcriptional activator Ogr/delta	Q9ZXJ1	Pseudomonas_virus	8.8e-35	72.3
AZF62615.1\|1776388_1776862_-	Phage protein	A0A2H4JG61	uncultured_Caudovirales_phage	7.8e-54	65.2
AZF62616.1\|1776902_1777163_-	hypothetical protein	NA	NA	NA	NA
AZF62617.1\|1777180_1777660_+	hypothetical protein	A0A2K9V3G4	Faecalibacterium_phage	8.9e-05	29.9
AZF62618.1\|1778258_1779350_+	hypothetical protein	U5P4L0	Shigella_phage	1.9e-63	41.0
1778992:1779008	attR	NA	NA	NA	NA
AZF62619.1\|1779346_1779892_+	hypothetical protein	NA	NA	NA	NA
AZF62620.1\|1779900_1781160_-	hypothetical protein	Q9ZXJ8	Pseudomonas_virus	1.1e-190	80.4
AZF62621.1\|1781156_1781597_-\|tail	Unclassified tail protein	A0A2H4JG54	uncultured_Caudovirales_phage	2.7e-56	71.9
AZF62622.1\|1781602_1785040_-\|tail	Phage tail length tape-measure protein	E5FFG5	Burkholderia_phage	6.4e-121	33.1
AZF62623.1\|1785029_1785149_-\|tail	Phage tail protein GpE, GpE'	Q9ZXK1	Pseudomonas_virus	6.5e-10	76.9
AZF62624.1\|1785157_1785493_-\|tail	Phage tail fiber	Q9ZXK2	Pseudomonas_virus	6.0e-24	60.2
AZF62625.1\|1785542_1786058_-\|tail	Phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	9.7e-74	77.2
AZF62626.1\|1786115_1787285_-\|tail	Phage tail sheath monomer	Q9ZXK4	Pseudomonas_virus	9.3e-165	73.6
AZF62627.1\|1787412_1787844_-\|tail	Phage tail fiber assembly protein	Q9ZXK5	Pseudomonas_virus	1.4e-28	51.4
AZF62628.1\|1787840_1789382_-\|tail	Phage tail fiber protein	A4PE45	Ralstonia_virus	2.1e-71	47.3
AZF62629.1\|1789378_1790080_-\|tail	Phage tail fiber	A0A2H4JAU2	uncultured_Caudovirales_phage	2.3e-70	71.2
AZF62630.1\|1790079_1790991_-\|plate	Baseplate assembly protein J	Q9ZXK8	Pseudomonas_virus	1.8e-123	76.4
AZF62631.1\|1790987_1791332_-\|plate	Phage baseplate assembly protein	Q9ZXK9	Pseudomonas_virus	5.7e-38	69.0
AZF62632.1\|1791328_1791907_-\|plate	Phage baseplate assembly protein W	Q9ZXL0	Pseudomonas_virus	1.5e-54	57.7
AZF62633.1\|1792017_1792563_-	hypothetical protein	NA	NA	NA	NA
AZF62634.1\|1792604_1793078_-\|tail	Phage tail completion protein	Q9ZXL2	Pseudomonas_virus	4.0e-42	59.9
AZF62635.1\|1793059_1793536_-\|tail	Phage tail protein	Q9ZXL3	Pseudomonas_virus	1.8e-42	56.9
AZF62636.1\|1793632_1794076_-	Phage spanin Rz LysB	Q9ZXL5	Pseudomonas_virus	1.4e-25	50.0
AZF62637.1\|1794072_1794276_-	hypothetical protein	NA	NA	NA	NA
AZF62638.1\|1794272_1795118_-	Putative phage-encoded peptidoglycan binding protein	Q9ZXL6	Pseudomonas_virus	4.0e-101	70.8
AZF62639.1\|1795114_1795393_-\|holin	Putative holin	Q9ZXL7	Pseudomonas_virus	2.1e-22	67.4
AZF62640.1\|1795394_1795748_-\|holin	Phage holin or membrane protein	Q9ZXL8	Pseudomonas_virus	2.2e-29	58.1
AZF62641.1\|1795775_1795988_-\|tail	Unclassified tail protein	Q9ZXL9	Pseudomonas_virus	1.2e-22	72.1
AZF62642.1\|1795987_1796449_-\|head	Phage head completion protein	Q9ZXM1	Pseudomonas_virus	2.5e-49	62.1
AZF62643.1\|1796550_1797270_-\|terminase	Phage terminase, endonuclease subunit	A0A2H4J948	uncultured_Caudovirales_phage	2.9e-68	58.1
AZF62644.1\|1797281_1798289_-\|capsid	Phage major capsid protein	A4PE30	Ralstonia_virus	5.3e-124	66.1
AZF62645.1\|1798334_1799213_-\|capsid	Phage capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	6.9e-80	58.8
AZF62646.1\|1799365_1801123_+\|terminase	Phage terminase, ATPase subunit	Q9ZXM5	Pseudomonas_virus	1.2e-285	81.1
AZF62647.1\|1801122_1802175_+\|capsid	Phage-related capsid packaging protein	A0A2H4J922	uncultured_Caudovirales_phage	4.3e-161	81.7
AZF62648.1\|1802331_1803126_+	Dam modification methylase	C7BGE1	Burkholderia_phage	2.2e-101	66.5
AZF62649.1\|1803122_1803803_-	Gifsy-2 prophage protein	A0A2H4J991	uncultured_Caudovirales_phage	5.7e-122	89.8
AZF62650.1\|1803886_1804096_+	hypothetical protein	A0A2H4J2T0	uncultured_Caudovirales_phage	9.7e-25	76.8
AZF62651.1\|1804132_1804360_+	hypothetical protein	NA	NA	NA	NA
AZF62652.1\|1804340_1804718_-	hypothetical protein	A0A2D1GNN8	Pseudomonas_phage	5.3e-29	61.2
AZF62653.1\|1805691_1806168_-	hypothetical protein	NA	NA	NA	NA
AZF62654.1\|1806286_1806502_-	hypothetical protein	A0A2H4J177	uncultured_Caudovirales_phage	8.2e-19	76.1

DBSCAN-SWA_4

2996100 : 3000952

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF63743.1\|2996100_2996586_-	hypothetical protein	A0A1B0VMB5	Pseudomonas_phage	2.6e-68	83.2
AZF63744.1\|2996655_2997126_-	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	1.2e-73	88.7
AZF63745.1\|2997122_2997365_-	hypothetical protein	A0A2H4J1H1	uncultured_Caudovirales_phage	2.2e-12	56.2
AZF63746.1\|2997367_2998036_-	phage-related exonuclease	F8TUK8	EBPR_podovirus	5.5e-37	42.3
AZF63747.1\|2998032_2999013_-	RecT protein	A0A0F6TJP0	Escherichia_coli_O157_typing_phage	1.1e-65	54.9
AZF63748.1\|2999068_3000199_-	hypothetical protein	NA	NA	NA	NA
AZF63749.1\|3000253_3000481_-	hypothetical protein	NA	NA	NA	NA
AZF63750.1\|3000516_3000651_+	hypothetical protein	NA	NA	NA	NA
AZF63751.1\|3000685_3000952_-	hypothetical protein	A0A2H4J404	uncultured_Caudovirales_phage	1.2e-24	73.4

DBSCAN-SWA_5

3005093 : 3043169

Pseudomonas_phage(83.33%)

tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF63758.1\|3005093_3005828_-	putative phage repressor	A0A0U4JEE2	Pseudomonas_phage	2.1e-37	40.8
AZF63759.1\|3005931_3006165_+	hypothetical protein	NA	NA	NA	NA
AZF63760.1\|3006215_3006833_+	hypothetical protein	NA	NA	NA	NA
AZF63761.1\|3007416_3008346_+	Primosomal protein I	A0A1B0VME0	Pseudomonas_phage	9.3e-51	65.3
AZF63762.1\|3008347_3009130_+	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	2.2e-93	66.9
AZF63763.1\|3009126_3009642_+	hypothetical protein	A0A2K8I9A9	Pseudomonas_phage	1.2e-34	43.6
AZF63764.1\|3009638_3009815_+	hypothetical protein	A0A1B0VP53	Pseudomonas_phage	7.7e-23	78.9
AZF63765.1\|3009811_3010453_+	Phage NinG rap recombination	A0A1B0VME4	Pseudomonas_phage	1.3e-83	74.8
AZF63766.1\|3010449_3010998_+	hypothetical protein	A0A0H5AWB8	Pseudomonas_phage	7.9e-66	69.8
AZF63767.1\|3011096_3012905_-	diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA
AZF63768.1\|3013710_3014082_+	Methyl-accepting chemotaxis protein	A0A059VK40	Pseudomonas_phage	4.0e-37	82.6
AZF63769.1\|3014081_3014399_+	lipoprotein, putative	A0A059VJW1	Pseudomonas_phage	1.9e-16	53.4
AZF63770.1\|3014524_3015076_-	hypothetical protein	NA	NA	NA	NA
AZF63771.1\|3015182_3015407_-	hypothetical protein	NA	NA	NA	NA
AZF63772.1\|3015767_3016106_+	hypothetical protein	A0A1B0VRJ1	Pseudomonas_phage	2.4e-57	95.5
AZF63773.1\|3016137_3016614_+	Phage protein	A0A1B0VMH2	Pseudomonas_phage	1.3e-80	96.8
AZF63774.1\|3016588_3017911_+\|terminase	Phage terminase	A0A1B0VP58	Pseudomonas_phage	1.1e-265	99.1
AZF63775.1\|3017907_3019326_+	structural protein	A0A1B0VMH0	Pseudomonas_phage	1.2e-272	96.4
AZF63776.1\|3019300_3020392_+	Phage protein	A0A1B0VMF3	Pseudomonas_phage	5.2e-186	94.2
AZF63777.1\|3020420_3020732_+	hypothetical protein	NA	NA	NA	NA
AZF63778.1\|3020824_3021553_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	4.3e-120	93.4
AZF63779.1\|3021565_3022531_+	putative phage protein	A0A1B0VMF8	Pseudomonas_phage	7.2e-163	90.6
AZF63780.1\|3022578_3023163_+	hypothetical protein	A0A1B0VMF7	Pseudomonas_phage	5.8e-67	71.9
AZF63781.1\|3023222_3023726_+	phage-related conserved hypothetical protein	A0A1B0VND3	Pseudomonas_phage	4.0e-72	82.6
AZF63782.1\|3023760_3023952_+	hypothetical protein	NA	NA	NA	NA
AZF63783.1\|3024003_3024372_+	phage-related conserved hypothetical protein	A0A1B0VRJ4	Pseudomonas_phage	9.1e-58	91.7
AZF63784.1\|3024368_3025025_+	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	7.0e-85	74.3
AZF63785.1\|3025021_3025216_+	hypothetical protein	A0A1B0VP65	Pseudomonas_phage	2.2e-26	87.3
AZF63786.1\|3025215_3025632_+	hypothetical protein	A0A1B0VMI0	Pseudomonas_phage	3.0e-65	90.6
AZF63787.1\|3025704_3026361_+	putative phage protein	A0A2H4J6K6	uncultured_Caudovirales_phage	1.3e-51	47.2
AZF63788.1\|3026364_3026745_+	hypothetical protein	A0A2H4IYQ5	uncultured_Caudovirales_phage	1.5e-31	54.3
AZF63789.1\|3026792_3027065_+	hypothetical protein	A0A1B0VMG9	Pseudomonas_phage	1.0e-21	58.1
AZF63790.1\|3027092_3030146_+\|tail	GTA tail tape measure	A0A1B0VMG8	Pseudomonas_phage	9.2e-172	41.1
AZF63791.1\|3030145_3030484_+\|tail	Phage minor tail protein	A0A1B0VMG7	Pseudomonas_phage	2.9e-50	80.4
AZF63792.1\|3030495_3031248_+\|tail	Phage minor tail protein	A0A1B0VNE0	Pseudomonas_phage	3.3e-139	92.4
AZF63793.1\|3031250_3032024_+\|tail	Phage tail assembly protein	A0A1B0VP68	Pseudomonas_phage	5.4e-137	88.0
AZF63794.1\|3032223_3033486_+	Methyl-accepting chemotaxis sensor/transducer protein	NA	NA	NA	NA
AZF63795.1\|3033697_3034309_+\|tail	Phage tail assembly protein I	A0A1B0VMI5	Pseudomonas_phage	4.8e-80	76.4
AZF63796.1\|3034368_3038094_+\|tail	Phage tail fiber protein	A0A1B0VMH5	Pseudomonas_phage	0.0e+00	67.9
AZF63797.1\|3038443_3039106_+	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	1.6e-65	54.8
AZF63798.1\|3039137_3040064_+	hypothetical protein	A0A2H4JCD3	uncultured_Caudovirales_phage	5.0e-12	70.0
AZF63799.1\|3040175_3040409_-	hypothetical protein	NA	NA	NA	NA
AZF63800.1\|3040573_3040999_+	structural protein P5, putative	A0A2H4J6R1	uncultured_Caudovirales_phage	5.0e-68	88.7
AZF63801.1\|3040995_3041511_+	hypothetical protein	A0A2H4IZW4	uncultured_Caudovirales_phage	5.3e-64	78.8
AZF63802.1\|3041543_3043169_-	Methyl-accepting chemotaxis sensor/transducer protein	A0A2H4J162	uncultured_Caudovirales_phage	3.0e-60	44.9

DBSCAN-SWA_6

3437305 : 3462232

uncultured_Caudovirales_phage(79.31%)

plate,terminase,tail,protease,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF64158.1\|3437305_3437518_+	hypothetical protein	A0A2H4J177	uncultured_Caudovirales_phage	4.0e-18	75.4
AZF64159.1\|3437681_3438476_-	Dam modification methylase	C7BGE1	Burkholderia_phage	5.4e-100	66.2
AZF64160.1\|3438626_3439169_-	hypothetical protein	B5TK84	Pseudomonas_phage	1.4e-43	56.9
AZF64161.1\|3439150_3439714_-	Phage endolysin	B5TK83	Pseudomonas_phage	8.9e-81	76.9
AZF64162.1\|3440318_3441365_-	Phage protein D	A0A2H4JBF6	uncultured_Caudovirales_phage	2.1e-147	75.1
AZF64163.1\|3441457_3441631_-\|tail	Phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	8.6e-19	76.8
AZF64164.1\|3441638_3442484_-	Phage protein U	A0A2H4J875	uncultured_Caudovirales_phage	9.2e-114	71.8
AZF64165.1\|3442493_3445628_-	Phage protein	A0A2H4JG00	uncultured_Caudovirales_phage	3.6e-94	37.8
AZF64166.1\|3445778_3446378_-	hypothetical protein	A0A2H4J873	uncultured_Caudovirales_phage	8.2e-16	46.8
AZF64167.1\|3446392_3446896_-\|tail	Phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	1.3e-62	71.3
AZF64168.1\|3446908_3448075_-\|tail	Phage tail sheath monomer	A0A2H4J869	uncultured_Caudovirales_phage	7.3e-170	77.7
AZF64169.1\|3448179_3448611_-\|tail	Phage tail fiber assembly protein	A0A291LAV4	Bordetella_phage	1.2e-24	47.8
AZF64170.1\|3448607_3450149_-\|tail	Phage tail fiber protein	A4PE45	Ralstonia_virus	6.5e-73	47.3
AZF64171.1\|3450145_3450835_-\|tail	Phage tail fiber	A0A2H4JDH5	uncultured_Caudovirales_phage	2.8e-68	68.2
AZF64172.1\|3450836_3451718_-\|plate	Baseplate assembly protein J	A0A2H4JFK9	uncultured_Caudovirales_phage	7.4e-106	67.9
AZF64173.1\|3451714_3452041_-\|plate	Phage baseplate assembly protein	A0A2H4JA09	uncultured_Caudovirales_phage	2.1e-34	66.0
AZF64174.1\|3452046_3452325_-	hypothetical protein	A0A2H4J885	uncultured_Caudovirales_phage	2.0e-09	57.1
AZF64175.1\|3452381_3452948_-\|plate	Baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	2.6e-56	74.6
AZF64176.1\|3452944_3453460_-	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	7.9e-60	63.7
AZF64177.1\|3453452_3454118_-	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	9.9e-79	69.0
AZF64178.1\|3454114_3454435_-	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	2.8e-39	70.5
AZF64179.1\|3454437_3455433_-	Phage protein	A0A2H4J890	uncultured_Caudovirales_phage	5.1e-172	89.4
AZF64180.1\|3455495_3455834_-	hypothetical protein	A0A2H4JF15	uncultured_Caudovirales_phage	9.5e-46	85.3
AZF64181.1\|3455830_3456967_-\|protease	Prophage Clp protease-like protein	A0A2H4JDI2	uncultured_Caudovirales_phage	1.6e-140	68.9
AZF64182.1\|3456963_3458445_-\|portal	phage portal protein, lambda family	A0A2H4JFL5	uncultured_Caudovirales_phage	8.0e-246	85.4
AZF64183.1\|3458444_3458651_-	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	2.0e-22	75.0
AZF64184.1\|3458652_3460677_-\|terminase	Phage terminase, large subunit	A0A2H4J898	uncultured_Caudovirales_phage	0.0e+00	79.5
AZF64185.1\|3460680_3461283_-	hypothetical protein	A0A2H4JG15	uncultured_Caudovirales_phage	1.1e-52	59.1
AZF64186.1\|3461529_3461769_-	hypothetical protein	NA	NA	NA	NA
AZF64187.1\|3462067_3462232_-	Holin	B5TK61	Pseudomonas_phage	1.1e-12	86.7

DBSCAN-SWA_7

3466370 : 3472812

uncultured_Caudovirales_phage(81.82%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF64188.1\|3466370_3466859_-	hypothetical protein	A0A2H4JFM0	uncultured_Caudovirales_phage	3.0e-40	63.6
AZF64189.1\|3467721_3467979_+	Phage repressor	A0A2H4J8I0	uncultured_Caudovirales_phage	3.3e-22	59.0
AZF64190.1\|3468114_3468333_+	hypothetical protein	A0A2H4JG20	uncultured_Caudovirales_phage	3.1e-13	59.7
AZF64191.1\|3468329_3468911_+	putative deoxynucleotide monophosphate kinase	A0A2H4J8A1	uncultured_Caudovirales_phage	1.1e-76	72.6
AZF64192.1\|3468921_3469197_+	hypothetical protein	A0A2H4JBX5	uncultured_Caudovirales_phage	2.3e-29	72.8
AZF64193.1\|3469193_3469571_+	hypothetical protein	A0A2H4J897	uncultured_Caudovirales_phage	2.9e-43	75.2
AZF64194.1\|3469567_3469810_+	transcriptional regulator PrtN, putative	A0A2H4J8B4	uncultured_Caudovirales_phage	2.1e-23	68.8
AZF64195.1\|3469864_3470212_+	hypothetical protein	C5IHK2	Burkholderia_virus	1.2e-14	41.0
AZF64196.1\|3470263_3471085_+	hypothetical protein	I6WAZ8	Burkholderia_virus	5.4e-42	42.9
AZF64197.1\|3471160_3471505_+	hypothetical protein	NA	NA	NA	NA
AZF64198.1\|3471504_3471744_+	Phage protein	A0A2H4JF29	uncultured_Caudovirales_phage	3.1e-27	70.5
AZF64199.1\|3471747_3472812_+	Integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	8.6e-117	61.7

DBSCAN-SWA_8

3910549 : 3915523

uncultured_Caudovirales_phage(75.0%)

integrase

attL 3900122:3900134|attR 3914564:3914576

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3900122:3900134	attL	NA	NA	NA	NA
AZF64565.1\|3910549_3910759_-	hypothetical protein	A0A2H4J2T0	uncultured_Caudovirales_phage	4.8e-24	76.8
AZF64566.1\|3910842_3911523_+	Gifsy-2 prophage protein	A0A2H4J991	uncultured_Caudovirales_phage	1.7e-126	92.4
AZF64567.1\|3911850_3912366_-	hypothetical protein	A0A2H4IZW4	uncultured_Caudovirales_phage	6.9e-64	79.3
AZF64568.1\|3912362_3912653_-	Phage endolysin	A0A059VA40	Pseudomonas_phage	1.9e-26	75.6
AZF64569.1\|3912828_3913098_-	structural protein P5, putative	A0A2H4J6R1	uncultured_Caudovirales_phage	4.2e-20	88.5
AZF64570.1\|3913169_3913661_-	hypothetical protein	A0A0C4K5Y2	Synechococcus_phage	1.1e-07	34.1
AZF64571.1\|3913747_3913996_+	hypothetical protein	NA	NA	NA	NA
AZF64572.1\|3914086_3914203_-	hypothetical protein	NA	NA	NA	NA
AZF64573.1\|3914244_3914481_+\|integrase	Phage integrase family protein	A0A2H4JDJ8	uncultured_Caudovirales_phage	8.2e-28	83.3
AZF64574.1\|3914851_3915523_+	Putative TEGT family carrier/transport protein	A0A2H4JFM9	uncultured_Caudovirales_phage	3.3e-106	92.8
3914564:3914576	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3936863 : 3943166

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF64599.1\|3936863_3937256_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	6.9e-56	83.1
AZF64600.1\|3937257_3937608_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	8.6e-42	72.5
AZF64601.1\|3937607_3937886_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.5e-25	59.6
AZF64602.1\|3937882_3938218_+\|tRNA	tRNA 2-thiouridine synthesis protein TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	7.2e-46	79.3
AZF64603.1\|3938214_3939216_+	Anthranilate phosphoribosyltransferase like	A0A2H4JBY5	uncultured_Caudovirales_phage	1.0e-167	85.7
AZF64604.1\|3939304_3940300_+	Glutathione S-transferase, omega	NA	NA	NA	NA
AZF64605.1\|3940490_3941885_-	Precorrin-2 oxidase	NA	NA	NA	NA
AZF64606.1\|3941885_3943166_-\|tRNA	Seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.4e-97	52.7

DBSCAN-SWA_10

6022435 : 6065911

Bacillus_virus(22.22%)

holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF66498.1\|6022435_6023383_+\|holin	Choline binding ABC transporter protein ChoX	NA	NA	NA	NA
AZF66499.1\|6023449_6024295_+\|holin	Choline binding ABC transport system permease protein ChoW	NA	NA	NA	NA
AZF66500.1\|6024291_6025470_+\|holin	Choline binding ABC transport system ATP-binding protein ChoV	G3M9Y6	Bacillus_virus	5.9e-26	37.1
AZF66501.1\|6025636_6027628_-\|holin	High-affinity choline uptake protein BetT	A0A2I7QNT1	Vibrio_phage	5.3e-19	27.1
AZF66502.1\|6027962_6028556_+	HTH-type transcriptional regulator BetI	NA	NA	NA	NA
AZF66503.1\|6028666_6030139_+	Betaine aldehyde dehydrogenase	NA	NA	NA	NA
AZF66504.1\|6030274_6031978_+\|holin	Choline dehydrogenase	A0A1V0SI18	Klosneuvirus	2.0e-51	30.7
AZF66505.1\|6032174_6033617_+	TldD family protein	NA	NA	NA	NA
AZF66506.1\|6033616_6034933_+	TldE/PmbA family protein	NA	NA	NA	NA
AZF66507.1\|6035233_6036124_+	RhlA, 3-(3-hydroxyalkanoyloxy)alkanoic acid (HAAs) synthase	NA	NA	NA	NA
AZF66508.1\|6036160_6037588_+	Efflux pump transporter of major facilitator superfamily (MFS)	NA	NA	NA	NA
AZF66509.1\|6037738_6039124_+	ATP-dependent 23S rRNA helicase DbpA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	1.1e-44	30.7
AZF66510.1\|6039288_6040467_+	Uncharacterized protein YhiN	NA	NA	NA	NA
AZF66511.1\|6040681_6042865_+	hypothetical protein	NA	NA	NA	NA
AZF66512.1\|6042976_6043672_-	amino acid ABC transporter, periplasmic amino acid-binding protein, putative	NA	NA	NA	NA
AZF66513.1\|6043912_6044365_+	N-acetyltransferase ElaA	NA	NA	NA	NA
AZF66514.1\|6044479_6044776_-	hypothetical protein	NA	NA	NA	NA
AZF66515.1\|6044795_6045296_-	Uncharacterized protein YgjP	NA	NA	NA	NA
AZF66516.1\|6045338_6047444_-	Sensory box/GGDEF family protein	G3MA91	Bacillus_virus	9.9e-24	38.6
AZF66517.1\|6047753_6048419_+	Alginate lyase	NA	NA	NA	NA
AZF66518.1\|6048419_6048551_+	hypothetical protein	NA	NA	NA	NA
AZF66519.1\|6048704_6049769_-	Fructose-bisphosphate aldolase class II	NA	NA	NA	NA
AZF66520.1\|6050037_6050370_-	Inhibitor of vertebrate c-type lysozyme, outer membrane	NA	NA	NA	NA
AZF66521.1\|6050432_6050660_-	hypothetical protein	NA	NA	NA	NA
AZF66522.1\|6050689_6051853_-	Phosphoglycerate kinase	NA	NA	NA	NA
AZF66523.1\|6051870_6052926_-	Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA
AZF66524.1\|6053064_6055062_-	Transketolase	NA	NA	NA	NA
AZF66525.1\|6055319_6056315_+	Transcriptional regulator, ArsR family	NA	NA	NA	NA
AZF66526.1\|6056334_6057525_+	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	3.9e-118	57.4
AZF66527.1\|6057953_6059618_+	DNA ligase (NAD(+))	A0A1Y0SVC9	Pseudomonas_phage	5.2e-28	24.7
AZF66528.1\|6059686_6060082_+	Protein yqjC precursor	NA	NA	NA	NA
AZF66529.1\|6060088_6060538_-	Cytochrome c556	NA	NA	NA	NA
AZF66530.1\|6060665_6061850_+	Membrane-bound lytic murein transglycosylase A	NA	NA	NA	NA
AZF66531.1\|6062165_6062552_-	putative membrane protein	A0A2H4J146	uncultured_Caudovirales_phage	1.5e-50	82.0
AZF66532.1\|6062617_6062731_-	hypothetical protein	NA	NA	NA	NA
AZF66533.1\|6062747_6064007_+	Putative Na+/H+ antiporter	A0A2H4J178	uncultured_Caudovirales_phage	1.6e-114	90.0
AZF66534.1\|6064048_6065911_-\|protease	Transglutaminase-like enzyme, putative cysteine protease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027762

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection