CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027760	Pseudomonas sp. R4-34-07 chromosome, complete genome	4 crisprs	DEDDh,DinG,csa3,cas3	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027760_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027760_1

123986-124096

Orphan

Consensus_repeat	Method
TGTAGCTTAGTTGGTTAGAGCGCACCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027760_1

>merge|CP027760|1|123986-124096|CRISPRCasFinder
TGTAGCTTAGTTGGTTAGAGCGCACCCCATGCTTTGTGGTAAAGAGCAGGGTGAGGTCGGCCTTAGCAGCTCGAAATTGGGTCTGTAGCTCAGTTGGTTAGAGCGCACCCC

>CP027760|1|1|123986-124096|CRISPRCasFinder
TGTAGCTTAGTTGGTTAGAGCGCACCCC	ATGCTTTGTGGTAAAGAGCAGGGTGAGGTCGGCCTTAGCAGCTCGAAATTGGGTC
TGTAGCTCAGTTGGTTAGAGCGCACCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP027760.1\|AZF50641.1\|120580_121801_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224717
CP027760.1\|AZF50643.1\|130120_133495_-\|Peptide-synthetase	unknown	unknown	gnl\|CDD\|341253
CP027760.1\|AZF50644.1\|133491_134439_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378680
CP027760.1\|AZF50640.1\|119385_120567_+\|Glutaryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173840
CP027760.1\|AZF50633.1\|112069_112390_-\|Outer-membrane-receptor-protein	unknown	unknown	gnl\|CDD\|274137
CP027760.1\|AZF50646.1\|135567_136278_-\|Transcriptional-regulator,-GntR-family	unknown	unknown	gnl\|CDD\|224715
CP027760.1\|AZF50634.1\|112721_112937_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227744
CP027760.1\|AZF50635.1\|113255_114749_-\|Acetyl-CoA-hydrolase	unknown	unknown	gnl\|CDD\|274588
CP027760.1\|AZF50650.1\|139796_155873_-\|T1SS-secreted-agglutinin-RTX	unknown	unknown	gnl\|CDD\|238119
CP027760.1\|AZF50649.1\|139306_139645_-\|hypothetical-protein	unknown	unknown	unknown
CP027760.1\|AZF50651.1\|156211_157570_+\|Type-I-secretion-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
CP027760.1\|AZF50639.1\|118328_119228_-\|Transcriptional-regulator,-LysR-family	unknown	unknown	gnl\|CDD\|176170
CP027760.1\|AZF50645.1\|134435_135194_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378614
CP027760.1\|AZF50632.1\|111679_111988_-\|Holliday-junction-resolvasome,-helicase-subunit	unknown	unknown	gnl\|CDD\|274137
CP027760.1\|AZF50642.1\|128170_130051_+\|Methyl-accepting-chemotaxis-sensor/transducer-protein	unknown	unknown	gnl\|CDD\|223910
CP027760.1\|AZF50636.1\|114982_116419_-\|NAD(P)-transhydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|224201
CP027760.1\|AZF50648.1\|137235_139182_+\|Membrane-bound-c-di-GMP-receptor-LapD	unknown	unknown	gnl\|CDD\|238923
CP027760.1\|AZF50638.1\|116754_117876_-\|NAD(P)-transhydrogenase-alpha-subunit	unknown	unknown	gnl\|CDD\|240629
CP027760.1\|AZF50637.1\|116418_116739_-\|NAD(P)-transhydrogenase-alpha-subunit	unknown	unknown	gnl\|CDD\|378941
CP027760.1\|AZF50647.1\|136528_137221_+\|T1SS-associated-transglutaminase-like-cysteine-proteinase-LapP	unknown	unknown	gnl\|CDD\|226198

Protein	Function_ID	Function_description	E-value
CP027760.1\|AZF50641.1\|120580_121801_+\|hypothetical-protein	gnl\|CDD\|224717	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion].	3.13462e-173
CP027760.1\|AZF50643.1\|130120_133495_-\|Peptide-synthetase	gnl\|CDD\|341253	cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS). The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions.	2.17906e-128
CP027760.1\|AZF50644.1\|133491_134439_-\|hypothetical-protein	gnl\|CDD\|378680	pfam11583, AurF, P-aminobenzoate N-oxygenase AurF. This family is a metalloenzyme which is involved in the biosynthesis of antibiotic aureothin by catalyzing the formation of p-nitrobenzoic acid from p-aminobenzoic acid. AurF is a non-heme di-iron monooxygenase which creates nitroarenes via the sequential oxidation of aminoarenes.	4.08958e-07
CP027760.1\|AZF50640.1\|119385_120567_+\|Glutaryl-CoA-dehydrogenase	gnl\|CDD\|173840	cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.	0
CP027760.1\|AZF50633.1\|112069_112390_-\|Outer-membrane-receptor-protein	gnl\|CDD\|274137	TIGR02448, conserved_hypothetical_protein, conserverd hypothetical protein. This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1, and also in Pseudomonas putida KT2440, four in Pseudomonas syringae DC3000, and single members in several other Proteobacteria. The function is unknown.	2.23181e-22
CP027760.1\|AZF50646.1\|135567_136278_-\|Transcriptional-regulator,-GntR-family	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.05961e-37
CP027760.1\|AZF50634.1\|112721_112937_-\|hypothetical-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	7.54005e-08
CP027760.1\|AZF50635.1\|113255_114749_-\|Acetyl-CoA-hydrolase	gnl\|CDD\|274588	TIGR03458, Propionyl-CoA:succinate_CoA_transferase, succinate CoA transferase. This family of CoA transferases includes enzymes catalyzing at least two related but distinct activities. The E. coli YgfH protein has been characterized as a propionyl-CoA:succinate CoA transferase where it appears to be involved in a pathway for the decarboxylation of succinate to propionate. The Clostridium kluyveri CAT1 protein has been characterized as a acetyl-CoA:succinate CoA transferase and is believed to be involved in anaerobic succinate degradation. The propionate:succinate transferase activity has been reported in the propionic acid fermentation of propionibacterium species, where it is distinct from the coupled activities of distinct nucleotide-triphosphate dependent succinate and propionate/acetate CoA transferases (as inferred from activity in the absence of NTPs). The family represented by this model includes a member from Propionibacterium acnes KPA171202 which is likely to be responsible for this activity. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins represented by this model, possibly erroneously.	0
CP027760.1\|AZF50650.1\|139796_155873_-\|T1SS-secreted-agglutinin-RTX	gnl\|CDD\|238119	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.	1.03054e-10
CP027760.1\|AZF50651.1\|156211_157570_+\|Type-I-secretion-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	2.53308e-70
CP027760.1\|AZF50639.1\|118328_119228_-\|Transcriptional-regulator,-LysR-family	gnl\|CDD\|176170	cd08481, PBP2_GcdR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators GcdR-like, contains the type 2 periplasmic binding fold. GcdR is involved in the glutaconate/glutarate-specific activation of the Pg promoter driving expression of a glutaryl-CoA dehydrogenase-encoding gene (gcdH). The GcdH protein is essential for the anaerobic catabolism of many aromatic compounds and some alicyclic and dicarboxylic acids. The structural topology of this substrate-binding domain is most similar to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.46669e-104
CP027760.1\|AZF50645.1\|134435_135194_-\|hypothetical-protein	gnl\|CDD\|378614	pfam11251, DUF3050, Protein of unknown function (DUF3050). This bacterial family of proteins has no known function.	4.47432e-112
CP027760.1\|AZF50632.1\|111679_111988_-\|Holliday-junction-resolvasome,-helicase-subunit	gnl\|CDD\|274137	TIGR02448, conserved_hypothetical_protein, conserverd hypothetical protein. This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1, and also in Pseudomonas putida KT2440, four in Pseudomonas syringae DC3000, and single members in several other Proteobacteria. The function is unknown.	5.75946e-27
CP027760.1\|AZF50642.1\|128170_130051_+\|Methyl-accepting-chemotaxis-sensor/transducer-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	2.85436e-78
CP027760.1\|AZF50636.1\|114982_116419_-\|NAD(P)-transhydrogenase-subunit-beta	gnl\|CDD\|224201	COG1282, PntB, NAD/NADP transhydrogenase beta subunit [Energy production and conversion].	0
CP027760.1\|AZF50648.1\|137235_139182_+\|Membrane-bound-c-di-GMP-receptor-LapD	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	9.34659e-58
CP027760.1\|AZF50638.1\|116754_117876_-\|NAD(P)-transhydrogenase-alpha-subunit	gnl\|CDD\|240629	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matrix side. DI contains 2 domains in Rossmann-like folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than a classical Rossmann domain.	0
CP027760.1\|AZF50637.1\|116418_116739_-\|NAD(P)-transhydrogenase-alpha-subunit	gnl\|CDD\|378941	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch. PNTB_4TM is the region upstream of family PNTB, pfam02233, that carries four of this transporters transmembrane regions. PNTB is the beta-subunit of pyridine nucleotide transhydrogenase. This family forms part of the Proton-translocating Transhydrogenase (PTH) Family.	4.6418e-40
CP027760.1\|AZF50647.1\|136528_137221_+\|T1SS-associated-transglutaminase-like-cysteine-proteinase-LapP	gnl\|CDD\|226198	COG3672, COG3672, Predicted transglutaminase-like cysteine proteinase [General function prediction only].	4.26002e-38

>CP027760.1|AZF50641.1|120580_121801_+|hypothetical-protein
MGALSHLRVLDLSRVLAGPWSGQILADLGAEVIKVERPGNGDDTRAWGPPFLKDAYGENTSEAAYYLSANRNKESVTIDFTKPEGQRLVRDLAAKSDILIENFKVGGLAAYGLDYESLKEINPELIYCSITGFGQTGPYATRAGYDFMIQGLGGLMSLTGRPEGDDGAGPVKVGVALTDILTGLYSTVAILAALAHRDHDGGGQHIDMALLDVQVACLANQAMNYLTTGVSPKRLGNAHPNIVPYQDFPTADGDFILTVGNDGQFRKFAEVAGQPQWADDPQFSTNKMRVANRAALIPLIRQATVFKTTAEWVSQLEKVGVPCGPINDLAQMFADPQVKARGLAMELPHALAGMVPQVASPIRLSKTPVEYRSAPPLLGEHTLQVLQSVLGLTPLNVDALRKAGVI
>CP027760.1|AZF50640.1|119385_120567_+|Glutaryl-CoA-dehydrogenase
MAGKASFNWIDPLLLDQQLTEEERMVRDSAEQFAQDKLAPRVLEAFRHEKTDPAIFREMGETGLLGAMIPEQYGGSGLNYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPINEFGTEAQKQKYLPKLASGEWIGCFGLTEPNHGSDPGAMITRARKVEGGYSLSGAKMWITNSPIADVFVVWGKDDAGDIRGFVLEKGWKGLSAPAIHGKVGLRASITGEIVMDNVFVPEENIFPDVRGLKGPFTCLNSARYGISWGALGAAEFCWHTARQYTLDRHQFGRPLAATQLIQKKLADMQTEITLALQGCLRLGRMKDEGTAAVEITSIMKRNSCGKSLDIARMARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDVHALILGRAQTGLQAFY
>CP027760.1|AZF50639.1|118328_119228_-|Transcriptional-regulator,-LysR-family
MRRKIPSTTALISFEAAARHESFTKAAQELSITQGAICRQIASLEEFLSVELFRRSRRGVKLTEAGLSYSRRVATQLDAVERDTLSVMGQQGANVIELAVVPTFGTQWLIPRLKDFQQQHPEVTVNLTNRTRPFLFADTEFDAAIYFGDADWSGTESHRLMGENPVPVCSPRLLGDLAHFTPREIAELPLLQQTTRPYAWRQWFNAQQLSVPRDMTGPRYELFSMLSQAAMHDMGIALIPPFLIQRELQEKQLVIAANQTLSSDKAYYLMIPERKVESASLHAFRDWLIGQSQRYNSAI
>CP027760.1|AZF50638.1|116754_117876_-|NAD(P)-transhydrogenase-alpha-subunit
MHIGVPLETQTGETRVAATPETIKKLIGQGHKVTVQSGAGIKASIVDSAYETAGATIGSANDAFGAELILKVVAPSDSELALIKSGTVLVGMLNPFSNETIAKLAECGITAFALEAAPRTSRAQSLDVLSSQANIAGYKAVLLAAHHYPRFMPMLMTAAGTVKAARVLILGAGVAGLQAIATAKRLGAVIEASDVRPPVKEQIESLGAKFVDVPYETDEERECAVGVGGYARPMPTSWMQRQALAVHERARQADIVITTALIPGRKAPTLLSAETVAQMKPGSVVIDLAAAQGGNCPLTVADQVVVENGVIICGPTNLAGAVAADASALYARNLLDFLKLVFTKEGQFEINLEDDIVAACLMCRDGQVIRKNA
>CP027760.1|AZF50637.1|116418_116739_-|NAD(P)-transhydrogenase-alpha-subunit
MEELISPGIYNLIIFVLAIYVGYHVVWNVTPALHTPLMAVTNAISAIVIVGAMLAAALTVTPLGKTMGTLAVALAAVNVFGGFLVTRRMLEMFKKKAPKVKEEAPK
>CP027760.1|AZF50636.1|114982_116419_-|NAD(P)-transhydrogenase-subunit-beta
MSMNLVTTLYLIASICFIQALKGLSHPTTSRRGNLFGMLGMALAVLTTVGLIYKLGAELATAGIGYVIVGLLIGGTAGSIMAKRVEMTKMPELVAFMHSMIGLAAVFIAIAAVVEPQSLGIVKHLGDAIPAGNRLELFLGAAIGAITFSGSVIAFGKLSGKYKFRLFQGAPVQFGGQHKLNLVLGLLTLGLGLAFMFTGNLTAFAVMLALAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVLLGGFGNTPDATAAAGSKEARPVKSGSADDATFLLTNADTVIIVPGYGLAVARAQHALKELTEKLTHRGVTVKYAIHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINSEFGQADVVLVLGANDVVNPAAKNDPNSPIAGMPILEAFKAKTIIVNKRSMASGYAGLDNELFYLDKTMMVFGDAKKVIEDMVKAVE
>CP027760.1|AZF50635.1|113255_114749_-|Acetyl-CoA-hydrolase
MYRDRIRLPSLLNKVMSAADAAALIEDGMTVGMSGFTRAGEAKAVPHALAERAKTSPLKITLMTGASLGNDLDKQLTEAGVLSRRMPFQVDSTLRKAINAGEVMFIDQHLSETVEQLRNNQLKLPDIAVIEAVAITELGHIVPTTSVGNSASFAIFAKQVIVEINLAHNPNLERLHDIYIPSYRPTRTPIPLVKVDDRIGSPAIPIPPEKIVAIVITNQADSASTVTPPDADTQGIANHLINFLKQEVDAGRMTNKLGPLQAGIGNIANAVMCGLIDSPFEDLTMYSEVLQDSTFDLIDAGKLSFASGSSITLSERRNADVFGNLEHYKDKLVLRPQEISNHPEVVRRLGIIGINTALEFDIYGNVNSTHVCGTRMMNGIGGSGDFARNAHLAIFVTKSIAKGGAISSVVPMVSHVDHTEHDVDILVTEVGLADLRGLAPRERARVIIDNCVHPAYRDALNSYFEAACALGGHTPHILRDALSWHINLEETGHMLKG
>CP027760.1|AZF50634.1|112721_112937_-|hypothetical-protein
MERTLSSELFFEEKAVNTQASLPLRVLANLMLWQRRISSRHQLARLDSRLLADAGISEAQRYEELSKPFWR
>CP027760.1|AZF50633.1|112069_112390_-|Outer-membrane-receptor-protein
MSRLRLLCTAALLAVAANANASSFIVTTDSIVGALKATSDATSDATSSLRDNKVVRAARDDAASFVASEGAIRGVKLESALAQIRQQAPQLNTATDAQLAQAILAI
>CP027760.1|AZF50632.1|111679_111988_-|Holliday-junction-resolvasome,-helicase-subunit
MAFSYRLLIVPVMFCACWAPPASAFDVSIQSTVVSAYATSKVTSAPFDNKLVRVAKDDAAAFIATDGQWRGARLESALDYLRRTQPKLHASDLELAQAILVQ
>CP027760.1|AZF50642.1|128170_130051_+|Methyl-accepting-chemotaxis-sensor/transducer-protein
MNLKFSHKILLAASGVVVLAFALFTFYNDYLQRNTIRQNLASSIQQSGELTASSVQNWLSGRILVLESLAQNVAHQGSAADLPGLVDQPALTSNFQFTYVGQINGVFTQRPDAKMPEGYDPRQRPWYKQAVAADKTMLTPPYMAAVGGQIVTIAMPVKKNGELLGVVGGDLSLQTLVKIINSVDFGGIGHAFLVSGDGQVIVSPDQDQVMKNLKDIYPGTQVRIEKVNQEVVLNGQDRILSFTPINGLPGADWYIGLSIDKDKAYAALGKFRTSALIAMLIAVVAIAVLLSVLIQVLLRPLTTMGVAMQDIAQGEGDLTRRLDVTSKDEFGEVGSAFNQFVERIHASISEVSSATRQVHDLSQRVMASSNASIIGSDEQSARTNSVAAAINELGAATQEIARNAADASQHASGASEQADDGRKVVEQTIQAMSELSQKISLSCTQIETLNASTDNIGHILDVIKGISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAEEIHKMITSLQVGSREAVTTMNASQVSSEESVEVANQAGERLVSVTQRIVEIDGMNQSVAAATEEQTAVVETLNVDINQINLLNQQGVANLNETLKDCDALSQQASRLKQLVDSFKI
>CP027760.1|AZF50643.1|130120_133495_-|Peptide-synthetase
MRRLTIEWGGTSEALGALKQVLEQYGHIAGAGSVDLVIEDGSQSPSALSTDAPWMSLRLGIGPVSETGLPALQFRCYDRDRRLLAVHDVAEEPSGNGQRLRRRAAHALVEWVASLVSGFSRDPGCFCATANPGTLPEQGLRGLESLAFMHRFNRTADPALLRAAQAPMIERLQASLNTFADRTALNIAGRRVTYRQLQEKAVAIQQHLLPLLEGIETPMVGVCLEKSTELYASILAVLGCGAVYLPLSPDHPVKRQHSMLTSAGAGVLLENGLHPLRDKFVSLDVSTLTPHGIDSTQPLMRHRPHADAPCMALFTSGTTGQPKGVLLSQHNLAHFTAWLGTCVALDDKSRVLQFSPLSFDSSLIDIFPALIAGAALIVPSAEQRHDPRQLVELIRLQRVTHAFLPPALLGILPLDQPLGLAHLLTGGDFCEPYVIERMAGQCQFHNLYGPTEATVLATHRTFRLGDSNRNIGLPIANSQVLILDKHLQPVDEQVMGDLYLAGPGVSLGYMNGPPQADSPFIKLTLPDGQWLQAYRSGDLAKWTQDGIELGGRRDDQVKIRGFRVEPQEIEHCLRSSRLFRQVAVVIDQTHRIIGFAAQPEPGATLASLKEHARQWLPEHMQPVAWSELPSLPASSNGKIDRKALRETPITRAQEMTRCSTLTPVQAQLVDLWGELLGLPAGDVSIDDSFFNLGGHSILLSTLLLRLREQFGRSLSLSQFFEAPTIRTLALQMEGAALPNTSFSQMEKDASRALALEVLPEARAGDPRKVIVTGANSFVGVHIVQALLAGGAQEVACLVRALPGQSAADRFSQALREYRLEQLDLSRVQVYAADLRQPRLGLSAEAYDHLARNHGVLVHNAAQVNHVMDYIALANDNVEPMFECLRLCETHCKKVFNFISTLSACSRLDTDGYVLEASASRALPLYVKNGYNLSKWVAERLLGRAVEQGAWVNIHRPGNISFNSRNGVCQPHKNRLMLMLKGSLQLGRVPRMEGNFDLMPVDFLARFIAFHSARFVPGRNVFNLHNPQPLSWDQYLDAFSQAGHTFERISLQHWQRALRTVRHDNALFGVLGFYLDGLGEDIGDTSMIHYSNAQWGLEQMGTQYPPKSPALLRKGCDYLRAIGFL
>CP027760.1|AZF50644.1|133491_134439_-|hypothetical-protein
MSATGYHSFAEDWERRATIRTRPRRMLENDGKLIYPLSRQPLVLSATFLERCSQCRDFVLTQSFYRFIHDIVVFETEIVDKLARRIAKNRFSLPLPLACRYDAMTVVVDEDYHALVALDFLQQAVALTGIEPLDLPGQIELSRALPAAQAQAPEHLHDAVELIVVAIAENTVTHDVAAFSKDDSIKSSVRGLMADHLFDEGRHAQFWTQLVRIYWQSASAQDRDSIAGVLPTFLAHYLTNDIQKGFDLQLIEHLDVSTDIRLALQDEIVALDFPITRQHPLMGNIMSFLHHSGVLHTPSVARALDDYLPAAGRLA
>CP027760.1|AZF50645.1|134435_135194_-|hypothetical-protein
MHHHLLEKKKLQLCSHPLFAEITSLSKLQHFMESHVFAVWDFMTLTKRLQQDLTCTQIPWLPPANPQAARLINEIVLGEESDEHPTRGHCSHFELYLEAMAEVGANTRVIARFIDLQHQGVEVSAALRMIGAPPGVPRFVDSTWQIALSAPTHCVAAAFLHGREGVIASMFERLLCSSPLIARQAPILCHYLNRHIELDSQEHGPAAEQVLQHLIGADPTRQRQADSAAFGALESRMTFWDDVHASMHEVNP
>CP027760.1|AZF50646.1|135567_136278_-|Transcriptional-regulator,-GntR-family
MTQKPNPLSSIKVSGPIPAHLARAVIEETLRNAILDGRLPCGTAMRQQELASLFGVSRMPVREALRQLEAQSLLHVVTHKGAVVAPLIEDNSAETYALRMLLESEALRLSIPLLTESDIAEAEACITALECEKDYSEIGRLNRLFHMILYGKAPNHRLLKLVEHGLNEEERFLRFNLEAMGLGETSQEDHRELLNLVVQKKIDESILTLRNHLMRGMEVINRYLNSLETANRTAAL
>CP027760.1|AZF50647.1|136528_137221_+|T1SS-associated-transglutaminase-like-cysteine-proteinase-LapP
MAVSFIPYRVFCWLLSAILLAGLMLGGLHADWDFSQISRKASALYGPLGEGQQRIDAWQRLLSTEKQVSEQDQLKVVNVFFNKQMTYVEDIDLWRAVDYWETPIEALWKGAGDCEDYAIAKYFSLRHLGVSSDKLRITYVKALRQNRAHMVLTYYSTPDAIPLVLDSLMDDILPATRRTDLIPVYSFNAEGLYLPGAKGNKKVGDTKRLSRWQDVLRKMRAEGFPAEPAN
>CP027760.1|AZF50648.1|137235_139182_+|Membrane-bound-c-di-GMP-receptor-LapD
MSLFKQLLIAICLFLVVAFSGSFMVSLESSRTQYVNQLRSHAQDAATALALSLTPNIDDPAMVELLVSSIFDSGYYASIRVVDLATDQTIVERSGIPDNNGVPPWFVKLIGLEPAGGDALVSRGWEQAARVEVVSHPMFALAKLWQSALGSLGWLLLCGAVSVVLGGLLLRRQLKPLDYMVKQSHAIARREFLSLPDLPRTPELRRVVQAMNQMVEKLKALFQEQAERSEKLRTESYQDNLTGLANRRYFEMQLKARVSNPEETNSGYLLVLRVKDLAGLNQRLGGQRTDQLLQAVGEQLLRQCEPYPETHNLVTRIRGGEFAVLAPGLTREEALQLAQNLESTLLSLQATGASDVTPVAYIGLAPFNHGDAPQALLTLADQALAQAEGQGDSTWACLDHSAAASVGDDHHAWHTLLDQALTQQRFELYFQPVVASQDPQLVLHYKVLSRLQDFDGHTLPAGRFLPWLERFGWSARLDRMMLEQVLKQMTGHSHNLALNLSAATLQDPQALQRIYDLLRQHSNLGSRLTLEIGEEQLPEQLVLEQMTQRLRELGFSLSLQRFGGRFSMIGNLARLGLAYLKIDGSYIRDIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELKVIREMGIFGVQGQLFGEPAPWK
>CP027760.1|AZF50649.1|139306_139645_-|hypothetical-protein
MFYVQRDAQGALSRVEAAAFAESTETLPADHHEIQAWYANEVVETSLAQLKQSDLEMIRVLDDLIQVLTRKGVISVTDLPPAAQAKLMDRNQAREALGGLSQLINDDEAGLI
>CP027760.1|AZF50650.1|139796_155873_-|T1SS-secreted-agglutinin-RTX
MSNVVAIVKSIVGQVFVISPEGTRRVLVEGDRLFAGDQIDTGLSGAVSLELADGRTLDLGRDTQWSADMPDSTADLAAATEQAAPSVAELQQAIAAGADPTTDLEATAAGATAAGNGAAGGGHSFVVLDATAGRVDPTIGFPTAPIGQGTSTLNTFTGAQASTGNGNLALQPATLSLSATPSITEAGGVLTYTATVTQPGTSDLTITLSNGAVITIPSGQLTGTVNVPLAPNDSPYIDASQISVNVTGTTGGNNLVLTLDPNPAVTQITDTLDTTTVTLTAGSSVTEGGQITYTATLTNPAQTPVNVTLSNGSVITIKAGESTGTVVVDTPANDVYVNGSTVSTTITGATGGNFENLVPSTTPAVTTITDSVDTTTVTLTAGSTVTEGGQITYTATLTNPAQTPVNVTLSNGSVITIKAGESVGTVVVDTPANDVYVNGSTVSTTITGATGGNFENLVPSTTPAVTTITDSVDATAVTLTADTSVTEGGQITYTATLTNPAQTPVNVTLSNGSVITIKAGESVGTVVVDTPANDVYVNGSTVSTTITGASGGNFENLVPSTTPAVTTINDSVDATAVTLTADTNVTEGGQITYTATLTNPAQTPVNVTLSNGSVITIKAGESVGSVVVDTPANDVYVNGSTISTTITGATGGNFESLVPSTTPAVTTITDSIDATTVTLTADTAVSEGGQITYTATLTNPALTPVNVTLSNGSVITIKAGESVGSIVVDTPPNDVYVNGSTISTTITGATGGNFENLVPSTTPAVTTITDSVDATAVTLTADANVTEGGQITYTATLTNPAQTPVNVTLSNGSVITIKAGESTGTVVVDTPANDVYVNGSTVTTTITSATGGNFESLVPSTTPAVTNITDSVDTTAVTLTADANVTEGGQITYTATLTNLAQTPVNVTLSNGSVITIKAGESTGTVVVDTPANDVYVNGSTVSTTITGVTGGNFENLVPSTTPAITTITDSIDTTTVTLTAPITASEGGQITYTATLSNKADTDVTLKLDNGSSITIKAGDTVGTVTVPAPTDDVFIDKSTQTVKITDATGGNFEKLEVAGSGATTTINDTIDKVDVVLTATTTVGEGGNIVYTASLVDKNGAPVTNITNPLTVTLDNGQSITIGVNQSSGSVSVVAPDDVYKGDQTVTAAIKDVTGGEHFENLVPGTAPVNTTVTDTPGTDNTTTVTLAAPSEASEGGQITYTATLSNKAGTDVTLKLDNGSSITIKAGDTVGTVTVPAPSDDVFIDKSTQTVRITETTGGNFEKLEVAGNGATTTINDTIDKVDVVLTATTTVGEGGNIVYTASLVDKNGAPVTNITNPLTVTLDNGQSITIGVNQSSGSVSVVAPDDVYKGDQTVTAAIQTVTGGEHFENLVPGPTPVNTTVTDTPGTDNTTTVTLTAPAEANEGGQITYTATLSNKAGSDVTLKLDNGSSITIKAGDTVGTVTVPAPIDDVFIDKSSQTVKITDATGGNFEKLEVAGNGATTTINDTIDKVDVVLTATNTVGEGGNIVYTASLVDKNGAPVTNVTNPLTVTLDNGQSITIGVNQSSGSVSVVAPDDVYKGDQTVTTAIQTVTGGEHFENLVPGTTPVNTTVTDTPGTDNTTTVTLTAPAAANEGGQITYTATLSNKAGTDVTLKLDNGSSITIKAGDTVGTVTVPAPTDDVFIDKSSQTVKITDATGGNFEKLEVAGNGATTTINDTIDKVDVVLTATTTVGEGGNIVYTASLVDKNGAAVTNITNPLTVTLDNGQNITIGVNQSSGSVSVVAPDDVYKGDQTVTTAIKDVTGGEHFENLVPGTAPVNTTVTDTPGTDNTTTVTLTAPSAVSEGGQITYTATLSNKAGSDVTLKLDNGSSITIKAGDTVGTVTVPAPSDDVFIDQSAQTVKISDATGGNFEKLEVAGDGASTTINDTIDKVDVVLTATTTVGEGGNIVYTASLVDKNGAAVTNITSPLTVTLDNGQTITIGVNQSSGSVSVVAPDDVYKGDQTVTTAIKDVTGGEHFENLVPGTAPVNTTVTDTPGTDNTTTVTLTAPSAVNEGGQITYTATLSNKAGSDVTLKLDNGSSIIVKAGDTVGTVTVAAPSDDVFIDKSTQTVKITDASGGNFEKLEVAGNGATTTVNDTIDKVDVVLTATNTVGEGGNIVYTASLVDKNGTPVSNITNPLTVTLDNGQSITIGVNQSSGSVSVVAPDDVYKGDQTVTAAINGVTGGEHFENLVPGTDKVTTAVTDTPGTDNTTTVTLTAPSAVNEGGQITYTATLSNKAGSDVTLKLDNGSSITVKAGDTVGTVTVPAPTDDVFIDKSTQTVKITDASGGNFEKLEVAGNGATTTINDTIDKVDVVLTATTTVGEGGNIVYTASLVDKNGAPVTNITNPLTVTLDNGQSITIGVNQSSGSVSVVAPDDVYKGDQTVTAAIKGVTGGEHFENLVPGTAPVNTTVTDTPGTDNATTVTLTAPAEANEGGQITYTATLSNKAGTDVTLKLDHGSSITIKAGDTVGTVTVPAPTDDVFIDKSSQTVQITETTGGNFEKLEVAGNGATTTINDTIDKIDVVLTATTTVGEGGSIVYTASLVDKNGTPVNNITNPLTVTLDNGQSITIGVNQTSGSVSVVAPDDVYKGDQTVTAAIKGVTGGEHFENLVPGTTAVNTTVTDTPGTADTTTVTLTAPSAVNEGGQITYTATLSNKAGTDVTLKLDNGSSIIIKAGDTVGTVTVPAPTDDVFIDKSAQTVKITDASGGNFEKLEVAGNGATTTINDTIDKVDVVLTATPTVGEGGNIVYTATLVDKNGALVSNITNPLTVTLDNGKTITIGVNQSSGTVTSVAPNDVYKGDQTVTASIKGVTGGEHFENLVPGSTPVNTTVTDTPGTDNTTTVTLTAPTAVNEGGQITYTATLSNKAGSDVTLKLDNGSSITIKAGNTVGTVTVPAPTDDVFIDKSTQTVQITETTGGNFEKLEVAGNGATTTINDTIDKVDVVLTATPTVGEGGNIVYTATLVDKNGAPVTNITNPLTVTLDNGQSITIGVNQSSGTVTSVAPNDVYKGDQTVTTAIKGVTGGEHFENLVPGTTAVNTTVTDTPGSTDLTSVTLTAPSAVNEGGQITYTATLSNKAGSDVTLKLDNGSSITIKAGDTVGTVTVPAPTDDVFIDKSTQTVKITDATGGNFEKLEVAGNGATTTINDTIDKVDVVLTATPTVGEGGNIVYTATLVDKNGALVNNTTNPLTVTLDNGKTITIGVNQSSGTVTSVAPNDVYKGDQTVNAAIKGVTGGEHFENLVPGTTAVNTTVTDTPGTADTTTVTLTAPSAVNEGGQITYTATLSNKAGSDVTLKLDNGSSITIKAGDTVGTVTVPAPTDDVFIDKSTQTVKITDATGGNFEKLAVAGNGATTTINDTIDKVDVVLTATPTVGEGGNIVYTASLVDKNGTPVNNITNPLTVTLDNGQSITIGVNQTSGSVSVVAPDDVYKGDQTVTAAIKGVTGGEHFENLVPGTTAVNTTVTDTPGTADTTTVTLTAPSAVNEGGQITYTATLSNKAGTDVTLKLDNGSSIIIKAGDTVGTVTVPAPTDDVFIDKSAQTVKITDASGGNFEKLEVAGNGATTTINDTIDKVDVVLTATPTVGEGGNIVYTATLVDKNGALVNNITNPLTVTLDNGKTITIGVNQSSGTLTTVAPNDVYKGDQTVTAAIKGVTGGEHFENLVPGTTAVNTTVTDTPGTADTTTVTLTAPTAVNEGGQITYTATLSNKAGSDVTLKLDNGSSITIKAGNTVGTVTVPAPTDDVFIDKSTQTVKITDATGGNFEKLEVAGNGATTTINDTIDKVDVVLTATPTVGEGGNIAYTATLVDKNGALVNNTTNPLTVTLDNGKTITIGVNQSSGTLTTVAPNDVYKGDQTVTTSIKSVTGGEHFENLVPGTTAVNTTVTDTPGNTDLTSVTLTAPSAVNEGGQITYTATLSNKAGSDVTLKLDNGSSITIKAGETVGTVTVPAPSDDVFIDKSTQTVKITDATGGNFEKLAVADNGATTTINDTIDDVTVVLKATGSVSEGGQIVYTASLVDKNGAAVTNVGSDLVVKLDNGSTITIGSGKSSSFTTATAPNDAYVGANDVTAKISAVVSGGDKYEHLMVDGSTVVTKVTDVVTNTTLSISGDASVTEGGTAHYALTLSNPAQTDVTVTLKYSGTATDGSDFNGVYTVKIPAGASSVPFDIRTLDDRITEPTEKIVITIDKATGGNFENLVIDKGTVSTDILDNDAPPVIDLDANNSSGASGNDFKTSFTEGTAGPGVSIADTDIKITDPDSTLLTGATVTLTNAQAGDALNLGNSVNGISVSTNNQTGTITLTLSGSATLADYMQRIQNITFTNTSHDPSTTPRTITVAVTDGGNYSNVATTTVNVVAVNDAPVATGGAVTGTEDTALALTWANFGVSDVDSPSASLGVKITDLPVAGKLQYLATDGTTWTNVTSGQTFTKAQIDGGQLRFTPNANESGTDGYGGTGIGNKQADYAQFKFQPTDGKDLGTSATVKVDITPVADAPTLGVADNNVNSVGLIKQSWNSLPGLGTNGNGAAPDVLKKAIDGAGTPNSTAVVTNVESTTDVTPGSGGKISGLMYMEAGKNYTFSGVADDSLLINVGGKDVASGLWGTNSGKFSGTFTPAVSGYYSLEIYQANQAGPGSFDVNLSINGGATQNLSTSNVPLYTGIADLTNAGVTVSDLHGSNGDGYYVGYKLNEGLENGSVKLSKITTALTDTDGSETLAVKIGGIPAGSVLTDASGHTFTATKTVGEVNVNGWDLGTLTIKPPTYYSGQFNLTVTSTSTESIGGSATTTAQLPVTVYPAAYNSVTGTSGSDSIIGTDGNDIVVADIGGLNVVQGKNYNLAFMVDSSGSMSTASIDAAKASLTTVFNSLKNSLGANTSGTVNIFLADFDSQVNKSIAINLNAPNALAQLKVVLDSMVSEGGTNYEDVFKTTANFFQSDLASKNTGATNLTYFITDGQPTFYQSGEQTNLTLYGNVKFDDVVTTANYTPGTSVGKYLDNTHYFSIDTSGAAQLQTWNGFWWTANNLGTVRAQGDGTFELSNLDGRGNSTDTATAANSKSAFALLGGLSQVEAIGINSDISLSDLKPYDSDGKPQANIDPKDLANAILGHTEATLPGADSISGGDGNDILFGDLVSFSGVTGEGYNALQAFVAQKAGVAVSAVSTSNVHQYVTEHYADFDVSGAKDGNDTLLGGNGDDILFGQGGNDVLDGGKGNDILLGGTGNDTLMGGQGNDILIGGAGADTFVWKSGDIGNDVIKDFKASEGDRIDLRDLLKGETDSTIDNYLKITTVEGVSTLQVSSEGKLNAAGGLANADVTIKLEGNDWSHTNINSLISGADPTIKIDHTA
>CP027760.1|AZF50651.1|156211_157570_+|Type-I-secretion-outer-membrane-protein
MRLHLLKAIPFVLAASFVQAQTLPQAMQQALDVHPEIQAGVNSRIAADYQLRAAQGGYLPRVDLNAGYGRAGTDNASTRLANGTGGNHWETLNRGESSLRLQQMIFDGFATSSEVGRQQANVNARAYSLLGTSERTALTVAQVYLEVLTRREFVRLAEDNLRNHERIYDQIKLRTQRGVGNGADQDQAEARLAQARNNLITEQTNLADAQTNYLSAVGQMPDQLERPAPFMAMLPADLNEARRQMLDNSPVLRSAESDISAAEKQYAAAKSSFYPRFDAELGTNADNNVGGDANHSNGWEAMVRMRFNLFAGGSNKADLQSKSYQANQALDIRNNALRQLNEELGLAWNALNNANAQLPVAQQYVDHSTRVRTSYQQQFSLGQRTLLDLLDSENELFTASRRLEEIKNIQLFTQYRIKATMGQLLKSQGVVAPMASIVQNDVKPKVQLPGMN

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Crispr_ID: CP027760_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027760_2

767491-767601

Orphan

Consensus_repeat	Method
TGTAGCTTAGTTGGTTAGAGCGCACCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027760_2

>merge|CP027760|2|767491-767601|CRISPRCasFinder
TGTAGCTTAGTTGGTTAGAGCGCACCCCATGCTTTGTGGTAAAGAGCAGGGTGAGGTCGGCCTTAGCAGCTCGAAATTGGGTCTGTAGCTCAGTTGGTTAGAGCGCACCCC

>CP027760|2|2|767491-767601|CRISPRCasFinder
TGTAGCTTAGTTGGTTAGAGCGCACCCC	ATGCTTTGTGGTAAAGAGCAGGGTGAGGTCGGCCTTAGCAGCTCGAAATTGGGTC
TGTAGCTCAGTTGGTTAGAGCGCACCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP027760.1\|AZF51163.1\|780007_780751_+\|Periplasmic-protein-TonB	unknown	unknown	gnl\|CDD\|236940
CP027760.1\|AZF51158.1\|771972_772596_+\|Paraquat-inducible-protein-A	unknown	unknown	gnl\|CDD\|225542
CP027760.1\|AZF51162.1\|778542_779820_-\|hypothetical-protein	unknown	unknown	unknown
CP027760.1\|AZF51155.1\|762415_763765_+\|Omega-amino-acid--pyruvate-aminotransferase	unknown	unknown	gnl\|CDD\|181707
CP027760.1\|AZF51157.1\|771326_771986_+\|Paraquat-inducible-protein-A	unknown	unknown	gnl\|CDD\|377345
CP027760.1\|AZF51150.1\|757803_758490_-\|Dehydrogenase	unknown	unknown	gnl\|CDD\|236173
CP027760.1\|AZF51165.1\|781492_781897_-\|Phosphotransferase-system,-HPr-related-protein	unknown	unknown	unknown
CP027760.1\|AZF51149.1\|756206_757565_-\|Guanine-deaminase	unknown	unknown	gnl\|CDD\|236184
CP027760.1\|AZF51156.1\|763804_765298_+\|Malonate-semialdehyde-dehydrogenase-(inositol)	unknown	unknown	gnl\|CDD\|143404
CP027760.1\|AZF51161.1\|777845_778553_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319980
CP027760.1\|AZF51148.1\|754862_755954_+\|Calcium/proton-antiporter	unknown	unknown	gnl\|CDD\|223464
CP027760.1\|AZF51166.1\|782036_782681_+\|Carbonic-anhydrase,-beta-class	unknown	unknown	gnl\|CDD\|238448
CP027760.1\|AZF51154.1\|761371_762289_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
CP027760.1\|AZF51160.1\|775008_777849_-\|Chromosome-segregation-ATPase	unknown	unknown	gnl\|CDD\|224117
CP027760.1\|AZF51159.1\|772588_774892_+\|Paraquat-inducible-protein-B	unknown	unknown	gnl\|CDD\|225553
CP027760.1\|AZF51164.1\|780743_781196_+\|Ribosomal-protein-S18p-alanine-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
CP027760.1\|AZF51152.1\|759142_759802_-\|Transcriptional-regulator,-AcrR-family	unknown	unknown	gnl\|CDD\|312013
CP027760.1\|AZF51147.1\|753714_754668_-\|Adenosine-deaminase	unknown	unknown	gnl\|CDD\|236480
CP027760.1\|AZF51151.1\|758548_759130_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224653
CP027760.1\|AZF51153.1\|759889_761284_-\|Xanthine-permease	unknown	unknown	gnl\|CDD\|274468

Protein	Function_ID	Function_description	E-value
CP027760.1\|AZF51163.1\|780007_780751_+\|Periplasmic-protein-TonB	gnl\|CDD\|236940	PRK11633, PRK11633, cell division protein DedD; Provisional.	0.00168029
CP027760.1\|AZF51158.1\|771972_772596_+\|Paraquat-inducible-protein-A	gnl\|CDD\|225542	COG2995, PqiA, Uncharacterized paraquat-inducible protein A [Function unknown].	2.18669e-73
CP027760.1\|AZF51155.1\|762415_763765_+\|Omega-amino-acid--pyruvate-aminotransferase	gnl\|CDD\|181707	PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional.	0
CP027760.1\|AZF51157.1\|771326_771986_+\|Paraquat-inducible-protein-A	gnl\|CDD\|377345	pfam04403, PqiA, Paraquat-inducible protein A. Paraquat is a superoxide radical-generating agent. The promoter for the pqiA gene is also inducible by other known superoxide generators. This is predicted to be a family of integral membrane proteins, possibly located in the inner membrane. This family is related to NADH dehydrogenase subunit 2 (pfam00361).	1.56437e-52
CP027760.1\|AZF51150.1\|757803_758490_-\|Dehydrogenase	gnl\|CDD\|236173	PRK08177, PRK08177, SDR family oxidoreductase.	3.94275e-147
CP027760.1\|AZF51149.1\|756206_757565_-\|Guanine-deaminase	gnl\|CDD\|236184	PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed.	0
CP027760.1\|AZF51156.1\|763804_765298_+\|Malonate-semialdehyde-dehydrogenase-(inositol)	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
CP027760.1\|AZF51161.1\|777845_778553_-\|hypothetical-protein	gnl\|CDD\|319980	cd16336, MukE, bacterial condensin complex subunit MukE. MukE is part of the MukBEF condensin complex that is mainly found in proteobacteria and is involved in chromosome organization and condensation. The complex is believed to serve as a part of the chromosome scaffold rather than a bulk DNA packing protein. MukE and MukF form a stable complex with each other and dynamically associate with MukB, a member of the SMC protein family. MukEF does not bind DNA on its own but modulates MukB-DNA activity. The stoichiometry of the MukEF complex is MukE4F2.	4.52637e-08
CP027760.1\|AZF51148.1\|754862_755954_+\|Calcium/proton-antiporter	gnl\|CDD\|223464	COG0387, ChaA, Ca2+/H+ antiporter [Inorganic ion transport and metabolism].	6.21969e-97
CP027760.1\|AZF51166.1\|782036_782681_+\|Carbonic-anhydrase,-beta-class	gnl\|CDD\|238448	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	2.1426e-111
CP027760.1\|AZF51154.1\|761371_762289_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.60876e-34
CP027760.1\|AZF51160.1\|775008_777849_-\|Chromosome-segregation-ATPase	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	1.60846e-06
CP027760.1\|AZF51159.1\|772588_774892_+\|Paraquat-inducible-protein-B	gnl\|CDD\|225553	COG3008, PqiB, Paraquat-inducible protein B [General function prediction only].	1.57692e-160
CP027760.1\|AZF51164.1\|780743_781196_+\|Ribosomal-protein-S18p-alanine-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	1.50726e-54
CP027760.1\|AZF51152.1\|759142_759802_-\|Transcriptional-regulator,-AcrR-family	gnl\|CDD\|312013	pfam08362, TetR_C_3, YcdC-like protein, C-terminal region. This family comprises proteins that belong to the TetR family of transcriptional regulators. They bear particular similarity to YcdC, a putative HTH-containing protein. This family features the C-terminal region of these sequences, which does not include the helix-turn-helix.	5.00976e-73
CP027760.1\|AZF51147.1\|753714_754668_-\|Adenosine-deaminase	gnl\|CDD\|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	1.87681e-166
CP027760.1\|AZF51151.1\|758548_759130_-\|hypothetical-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	9.04372e-62
CP027760.1\|AZF51153.1\|759889_761284_-\|Xanthine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	8.27432e-137

>CP027760.1|AZF51156.1|763804_765298_+|Malonate-semialdehyde-dehydrogenase-(inositol)
MSLIQHLINGELVNDSGRSADVYNPSTGQVIHQVPLASRETIQQAIDAAKAAFPAWRNTPPAKRAQVMFRFKQLLEQNEARISQLISEEHGKTLEDAAGELKRGIENVEYACSAPEILKGEYSRNVGPNIDAWSDFQPLGVVAGITPFNFPAMVPLWMYPLAIVCGNCFILKPSERDPSSTLLIAQLLQEAGLPKGVLSVVHGDKGAVDALIEAPEVKALSFVGSTPIAEYIYAEATKRGKRVQALGGAKNHAVLMPDADLDNAVSALMGAAYGSCGERCMAISVAVCVGDQVADALIAKLVPQVKALKIGAGTTCGLDMGPLVTGQARDKVSGYIEDGVSAGAELVVDGRGLSVAGHEHGFFLGGSLFDRVTPEMRIYKEEIFGPVLCVVRVDSLEAAMQLINDHEYGNGTCIFTRDGEAARLFCDEIEVGMVGVNVPLPVPVAYHSFGGWKRSLFGDLHAYGPDGVRFYTRRKAITQRWPQRASHEASQFAFPSL
>CP027760.1|AZF51155.1|762415_763765_+|Omega-amino-acid--pyruvate-aminotransferase
MNMPENAPSSLASQLKLDAHWMPYTANRNFQRDPRLIVAAEGSWLTDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVARQLGTLDYSPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECADTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQSMMDVDHLPHTLLASNAFSRGMPELGGIALADELLKLIELHDASNIAAVFVEPMAGSAGVLVPPQGYLKRLREICDQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASSEIYQTFMNQATPEYAVEFPHGYTYSAHPVACAAGLAALDLLQKENLVQSVAEVAPHFENALHGLKGSKNVVDIRNYGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVLNKID
>CP027760.1|AZF51154.1|761371_762289_-|LysR-family-transcriptional-regulator
MSRRPDPLAQVSDFDIRLLRIFRSVVECGGFSAAETVLGIGRSAISQQMSDLEQRLGLRLCQRGRAGFSLTEEGREVYQSALQLLSALESFRTEVNGLHQHLRGELIIGLTDNLVTLPHMRITHALAQLKERGPDVQIQIRMIAPNEVEQGVLDGRLHVGVVPQASALSGLEYQPLYSERSLLYCAVGHPLFYADDKQLDDARLDGQDAIAPTFRLPAEIQAHYQALNCTASASDREGMAFLILTGRYIGYLPDHYASLWVQQGRLRALKSATRFYDLSLASVTRKGRRPHLVLESFLESLATTR
>CP027760.1|AZF51153.1|759889_761284_-|Xanthine-permease
MPAKSSSPNDLIYGLDDRPKPLPALLAALQHVLAAFVGIITPPLIIGSTLGLTAHLPYLISMALMVSGVGTFIQARRPFGIGAGMICLQGTSFAFLGAVLSAGFLVKQRGGSPEDILAMIFGVCFFGALVQIVLSRCMGQLRRVITPLVTGIVITLIGISLIKVGITDLGGGFNAPDFGAPTNLALGLFVVLTIILLNRSNTPWVRLSAIIIGLALGSLAAWFSGKLVPHALPDLPLISLPTPFRFGFNFDWSAFLPIALIYLISSIETVGDLTANCMIARQPISGASYISRLKGGVLGDGVSCMIAATFSAFPNTTFAQNNGVIQLTGVASRYVGLYIGAVLICLGLFPMIGAVLQQIPKPVLGGATLVMFGSVAAAGVRILAQAPLDRRSMLIIATSFGVGLGIAAQPNLLHLMPTLVQNLFDSAITSGGLTAIVLCLLLPEAKTTDAVANHTPESDSLESL
>CP027760.1|AZF51152.1|759142_759802_-|Transcriptional-regulator,-AcrR-family
MSLEVPAHSNHAGKPASRIRQKNEQAILQAAEDEFARHGYKGTSMNTIAASAGLPKANLHYYFTNKLGLYIAVLSNILELWDSTFNALTAEDDPAVALSRYIRTKMEFSRRQPQASRIFAMEIISGGECLTEYFSQDYRAWFSGRAAVFQAWIDAGKMDPIDPVHLIFLLWGSTQHYADFATQICRVTGRTKLTKQDMEDAGTNLIHIILKGCGIKPAQ
>CP027760.1|AZF51151.1|758548_759130_-|hypothetical-protein
MPFTLTGLCEFREEIRKSRFITLAAPITSPHDAQAFFEQHSDLNATHNCWAWKLADQYRSNDDGEPGGTAGRPILAAIEAQGFDQVAVLVIRWYGGIQLGTGGLARAYGGGANKCLQNAERIELISRIPLRCACAFAELNLVKLRVADLGGLVVEEIFTANGVELQLALGEEQVDTLQAQLADLSRGRILLQR
>CP027760.1|AZF51150.1|757803_758490_-|Dehydrogenase
MPTPKTALIIGASRGLGLGLVKQLLQDGWDVTATVRDPNKADALKAVGPVQIEKLDMDDQQAVIALAQRLKDRTFDLLFVNAGVKGPANQEPGHATLAEVGQLFFTNAVAPINLAQRFVGQIRKDTGVLAFMSSVLGSVTIPDGSDMALYKASKAALNSMTNSFVTQLGEHKPTVLSLHPGWVKTDMGGENAHIDVETSVRGLVDQVNAYTGKGGHHFVDYKGDTIAW
>CP027760.1|AZF51149.1|756206_757565_-|Guanine-deaminase
MPATRIWLKNPLAIFTANGLDARGGLVLQDGVITELLAQGQAPAQPCAQVFDAHEHVVLPGLINTHHHFYQTLTRAWAPVVNQPLFPWLKTLYPVWARLTPEKLALASKVALAELLLSGCTTAADHHYLFPDGLENAIDVQVDSVRELGMRAMLTRGSMSLGEAEGGLPPQQTVQQGQVILDDSQRLIRQYHERGDGAQIQIALAPCSPFSVTPEIMQASAELATSLDVRLHTHLAETLDEEDFCLQRFGLRTVDYLDSVGWLGPRTWLAHGIHFNPDEIARLGAAGTGICHCPSSNMRLASGICPTLDLLAAGAPIGLGVDGSASNDASNMILETRQALYIQRLRYGAEKITPEGVLGWATKGSAQLLGRTDIGELAVGKQADLALFKLDELRFSGSHDPISALLLCGADRADRVMIGGKWRVIDGQVEGLDLKGLIADHSQAARQLIAGN
>CP027760.1|AZF51148.1|754862_755954_+|Calcium/proton-antiporter
MLTSLKQEKFMLLALIAAIAAYPLEHWMLHSGQIVALLAGLGLIAFIVMASMRVAHHAEQLAEKVGDPYGTMILTLAAVLVEVVILAIMMSNEPSPTLVRDTIYSAVMLDINGILGLAALMGGIKHGEQSYNDDSARTYSVMILTAMGVSMVVPEFIPEADWKIYSAFTIGAMVVLYTLFLRMQVGPHSYFFSYSYPEKRRKKLPEDEQAPPVNLAFSIGILVFGVIVIGALAEVMSKTLDLGLEGTGAPPVITAIVVAAISAAPEILTALRAALANRMQSVVNIALGASLSTVILTVPVMEAMALYSGQPFQMAMTPVQTVMVFITLIVSAINLNDGETNAIEGMTHFVLFATFIMLSLLGL
>CP027760.1|AZF51147.1|753714_754668_-|Adenosine-deaminase
MYDWLNALPKAELHLHLEGSLEPELLFALAERNKIALPWNDVETLRKAYAFNNLQEFLDLYYKGADVLRTSQDFYDLTWAYLLRCKAQNVIHTEPFFDPQTHTDRGVPFEVVLNGIAAALKDGEQQLGITSGLILSFLRHLSEAEAEKTLDQALPFRDAFVAVGLDSSEMGHPPSKFQRVFDRARHEGFLTVAHAGEEGPPEYIWEAIDLLKIQRIDHGVRAIEDERLMQRIIDEQIPLTVCPLSNTKLCVFDDMAQHNILDMLERGVKVTVNSDDPAYFGGYVTENFHALHTSLGMTQDQAKRLAQNSLDARLVKP
>CP027760.1|AZF51157.1|771326_771986_+|Paraquat-inducible-protein-A
MPDPVDALEVSDLPLDDLVACHECDLLMRKPSLALGEKAECARCGYELYAHRHNVVERSLALVLAALLLYIPANFLPIMQLNLLGQSSEDTVWTGVVGLFNTGMQGVAVVVFLCSMGIPLLKLLCQLAVLLSIRWNIGRSYGLLFYRIYHHMKDWGMLEVYLMGVLVALVKLADMASITLGLGLVCFVSLLMVQILLEVVMSPHQIWQALSGENDHAGN
>CP027760.1|AZF51158.1|771972_772596_+|Paraquat-inducible-protein-A
MRAIDAGILICTECHELNKQQADADEQLCTRCGALIHPRRPNSLIRTWALLVTAAILYIPANLLPIMTVNSLGQGDPSTIMSGVIQLVQHGMFPIAAVVFIASILVPTFKLVGIGLLLFSVQRRQPLSAQQRIIMYRFIEFIGRWSMLDIFVIAILVAVVNFGRLASVEANLGAAAFASVVILTMFAAVTFDPRLIWDNTESDDDHE
>CP027760.1|AZF51159.1|772588_774892_+|Paraquat-inducible-protein-B
MSDLPKAKTRPASNWSAIWVLPLIALIIGGWLGWRAYSQQGIEIQVRFESGEGIQVNKTEVVYKGMTVGKVKALALDDEGSNRGVIATIEMNKDVEQYLKTNTRFWLVKPSVSLAGITGLETLVSGNYIAASPGDGEPTRKFKALSEEPPLSDAKPGLHLTLKADRLGSLNRGSPVFYKQIQVGQVKSYLLSEDQSTVEIKVYIEPTYANLVRKHTRFWNASGISIDANLSGVKVRSESLSSIVAGGIAFATPENRKDSPPTDPSLPFRLYEDFDAAAAGIKVKVKLTDFEGLQAGRTPVMYKGIQVGSLKTLKIDPDLTSASAELTLDPLAEDYLVQDTQFWVVKPSISLAGITGLEALVKGNYIAIRPGDKGTPPQREYVARAKAPPLDLRSPGLHMVLLTDNLGSLDVGSPILYKQVKVGSVQSYQFSRKKKQLVIGVHIEKEYESLVNGSTRFWNASGVTLTGGLTGGIQVKSESLASLMAGGIAFETPEPNVPLKRRIPRFRLFADRDAANQHGTLVTIKVDRADGLSPGTPVRFKGLEVGKLESVDLSADMQSVLLKARITQVADRIARVGSQFWVVKPELGLMKTANLETLVTGQYIEVQPAAKNAGPQKSFVALAQPPEVAHQEAGLSLTLSAARRGSLKEGVPVTYREVTVGKVTGYELGQTADRVLVHILIEPKYAPLVRSGSRFWNTSGFGLDFGLFKGATVRTESLETLVAGGIAFATPEGERMGNPARPQQTFALFDKFEDEWLTWAPKIPLGK
>CP027760.1|AZF51160.1|775008_777849_-|Chromosome-segregation-ATPase
MSKERYGIRRFALLNTAGYSLGLFPLEEPLSVYGANNLGKSASINALQFPILARMSDMSFGKYTLEQSRRFYFATDTSYILVEVSLPHGPHVIGVVGRGPGGGFGHQFFAYAGKLDLAHYQKNDTCLRQKELFTNLEREGLKAYELKPDELRRLLVGGHTSIPLDLTLIPLRSTSEQSLKTFRALFINLLHMREITAAKLKQLFLDAFEHSLRSGSVDYIAACEEAFRDVRRMEQDYNSLVAAGPLVEALANGVKQRDILRGKLHRLSPLLDSLLGTWSDYASARKEELTIQAEHYRNEQDALQNDQRGGTQELMRLEREISGIQRWLGELSVLKHRFALVDDVRVLEQQLLAAKDAHDELAGALAQSRQFSAEDLDERLRDLEKRLKSVKQQLDHADNNSYAKLREEFSQQDVERLMRLFNSALFSLPLGEHGITLDEQGQWVKSLEQILEGFKGERFEVPGLSIDLSHIEPPALQALADRAALRDQKERLEKELKQLKTQHAVASDRAASKTQTEALYQQVLDAQKALEDFRRTQTLSAEEGEKLEHLAQMEAAQDELKRSSDAFTERVQQLSAKLQLVGRQIGDMEAKQRTLDDALRRRQLLPADLPFGTPFMDPVDDSMDNLLPLLNDYQDSWQGLLRADGQIEALYAQVRLKGVAKFDSEDDMERRLQLLINAYAHRTDEALTLGKARRAAVTDIARTLRNIRSDYDSLEHQLALFNREINKRQVSNLQSFRIVLAPNKEALKHIDQIIHSAGQYEEGETLSVFDLSQSAEQDNKNEEAKEYLARLVAANHNQLGLKDLFELAFEITKVNGQPVIHTDIDGAASNGTTMTIKALTNMYLLLHLMDRDQAGRVRLPYYLDEAADIDEKNQAALLETSLQLGFVPILASVKPQVSAQVAIDLEGGSGPNGIYIDEADWKYIRRHDAVKATLNMQADEPELDVV
>CP027760.1|AZF51161.1|777845_778553_-|hypothetical-protein
MHLDLSELSQLAPIFRELFKGYHVSRRDPELYAQLSNFQDQYRTLFKALGFELVCDTRGFYYFVPDSAIASAQVNKTAQRLALFTFILVEHLADQGRDPVAVLDGGSLGRDELPSLLEKYRDLFIQAEVQTQEELEEKIMRRMTQLGFASEDNGIYRFLPPMHRFLDVCLSVQQDRDLAASVHSVLPLPAPVIIDEDSDEKLLKTDDPLDLSDFAEDSEEDALARAIAEEQETDA
>CP027760.1|AZF51162.1|778542_779820_-|hypothetical-protein
MIEPKRVLRALAEHWALLEPLCEHFDQGTLSLGELRAQLAAQQLDSTPQDITSLLDVWIRLDILVPVAKSPNRFELNAQIHDFLAYLRKEHRLGLCLEIEAYLRHLERLAGYIQDAFDIRDGHDLARQLRLLDMRVRDVLKKLANDEQALAAVADRAKTSDRQIPLRQRYAEVLATWDEYVEPMIQLVNADGAFEQGVRKVENVLLRMLTEQQRLGHLVDDDMLLRTHARILEMQTSAQLTLRHARELLLPLREEARRHNAVTRGAALALSAIRRKGLDAVPQAAMPMFSRPQSTFLGSASQVEAYVYALANFEPKPARFPKAHKTHKGEAPRAPRTVKEMLERCEDALPMPDLMTWLLEQEPDGATDELLYWFSRLSREKRFKRERLERRDYHTHEHQVSLRSFALLPASSDAAEHSASIPNAS
>CP027760.1|AZF51163.1|780007_780751_+|Periplasmic-protein-TonB
MQVVNWLPRTELPFAAPSRPELLQAPEPYEAFSPSGEEAAAPVAVIKPVPETRPTVARTKIEVPRPSPVVKAVVAEDTAPVAKAPVVPPPRFALQLLRAGRCLLLVELPTGERFQSRDPAYLLLKDMLRAAGLPDSPQIVGDPVRWPLLVRGTMDQGPDAARDFVQSFVAARLEDEPCVCLWLIGLPAVRFAGEADAEAWCRELQVEGLGSVWALPGLELLMEEPQRKADIWQAMRRLMARWKTTDE
>CP027760.1|AZF51164.1|780743_781196_+|Ribosomal-protein-S18p-alanine-acetyltransferase
MSEALSFRPMTEADLDAVLKIEYAAFSHPWTRGIFLDGLGKYQIWLMFEGEQQVGHGVVQIILDEAHLLNITVKPENQGRGLGLALLEHLMSRAYAANARECFLEVRDSNTGAFRLYERYGFNEIGRRRDYYPAVGGREDAVVMACTLVD
>CP027760.1|AZF51165.1|781492_781897_-|Phosphotransferase-system,-HPr-related-protein
MTESRRPYGATQPEPIDDNEDRMGSMRELDFDEEDQTAEIGDELPPGEREHLMPDERVREAGLTGASTDDHESTDDDMSPETLIHEDGARDAREEGEDSPADYDLSIVDEDEIGGGNGLDEAELADLDPLNGKR
>CP027760.1|AZF51166.1|782036_782681_+|Carbonic-anhydrase,-beta-class
MNELQDLLDNNERWADAIKQEDPEFFAKLARQQTPEYLWIGCSDARVPANEIVGMLPGDLFVHRNVANVVLHTDLNCLSVIQYAVDVLKVKHILVTGHYGCGGVRAAMQDRQFGLIDGWLRTIRDLYYENRDVLAQLPTEEERVDRMCELNVIQQVANVGHTSIVQNAWHRGQSLSIHGCIYGIKDGRWKSLNTTISGFEQLPPQYRLRPLGEV

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Crispr_ID: CP027760_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027760_3

4466327-4466437

Orphan

Consensus_repeat	Method
GGGGTGCGCTCTAACCAACTGAGCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027760_3

>merge|CP027760|3|4466327-4466437|CRISPRCasFinder
GGGGTGCGCTCTAACCAACTGAGCTACAGACCCAATTTCGAGCTGCTAAGGCCGACCTCACCCTGCTCTTTACCACAAAGCATGGGGTGCGCTCTAACCAACTAAGCTACA

>CP027760|3|3|4466327-4466437|CRISPRCasFinder
GGGGTGCGCTCTAACCAACTGAGCTACA	GACCCAATTTCGAGCTGCTAAGGCCGACCTCACCCTGCTCTTTACCACAAAGCAT
GGGGTGCGCTCTAACCAACTAAGCTACA

Protein	Signature genes	Signature genes Name	Protein_function
CP027760.1\|AZF54577.1\|4459235_4459559_+\|Negative-regulator-of-flagellin-synthesis-FlgM-(anti-sigma28)	unknown	unknown	gnl\|CDD\|274802
CP027760.1\|AZF54589.1\|4478450_4478960_+\|6,7-dimethyl-8-ribityllumazine-synthase,-putative	unknown	unknown	gnl\|CDD\|237096
CP027760.1\|AZF54586.1\|4472867_4474109_-\|Aspartokinase	unknown	unknown	gnl\|CDD\|235843
CP027760.1\|AZF54584.1\|4470223_4471666_-\|Mg/Co/Ni-transporter-MgtE,-CBS-domain-containing	unknown	unknown	gnl\|CDD\|225148
CP027760.1\|AZF54587.1\|4474206_4476825_-\|Alanyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|234701
CP027760.1\|AZF54590.1\|4479092_4480097_-\|Succinylglutamate-desuccinylase	unknown	unknown	gnl\|CDD\|235408
CP027760.1\|AZF54585.1\|4472504_4472693_-\|Carbon-storage-regulator	unknown	unknown	gnl\|CDD\|234973
CP027760.1\|AZF54574.1\|4456450_4457278_-\|Chemotaxis-protein-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|224271
CP027760.1\|AZF54571.1\|4454553_4455273_-\|Flagellar-basal-body-rod-modification-protein-FlgD	unknown	unknown	gnl\|CDD\|235847
CP027760.1\|AZF54582.1\|4469233_4469413_+\|hypothetical-protein	unknown	unknown	unknown
CP027760.1\|AZF54576.1\|4458341_4459094_+\|Flagellar-basal-body-P-ring-formation-protein-FlgA	unknown	unknown	gnl\|CDD\|180794
CP027760.1\|AZF54572.1\|4455289_4455733_-\|Flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|235556
CP027760.1\|AZF54581.1\|4468994_4469222_+\|hypothetical-protein	unknown	unknown	unknown
CP027760.1\|AZF54588.1\|4476971_4477976_-\|Low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
CP027760.1\|AZF54578.1\|4459607_4460078_+\|Flagellar-biosynthesis-protein-FlgN	unknown	unknown	gnl\|CDD\|377465
CP027760.1\|AZF54580.1\|4460984_4462406_-\|putative-MFS-type-transporter	unknown	unknown	gnl\|CDD\|341030
CP027760.1\|AZF54575.1\|4457321_4458254_-\|Chemotaxis-protein-CheV	unknown	unknown	gnl\|CDD\|381151
CP027760.1\|AZF54583.1\|4469796_4470123_+\|Alginate-biosynthesis-transcriptional-activator	unknown	unknown	gnl\|CDD\|367702
CP027760.1\|AZF54573.1\|4455736_4456144_-\|Flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|180196
CP027760.1\|AZF54579.1\|4460174_4460924_+\|Flagellar-brake-protein-YcgR	unknown	unknown	gnl\|CDD\|227868

Protein	Function_ID	Function_description	E-value
CP027760.1\|AZF54577.1\|4459235_4459559_+\|Negative-regulator-of-flagellin-synthesis-FlgM-(anti-sigma28)	gnl\|CDD\|274802	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.	2.44355e-21
CP027760.1\|AZF54589.1\|4478450_4478960_+\|6,7-dimethyl-8-ribityllumazine-synthase,-putative	gnl\|CDD\|237096	PRK12419, PRK12419, 6,7-dimethyl-8-ribityllumazine synthase.	1.10348e-96
CP027760.1\|AZF54586.1\|4472867_4474109_-\|Aspartokinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
CP027760.1\|AZF54584.1\|4470223_4471666_-\|Mg/Co/Ni-transporter-MgtE,-CBS-domain-containing	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	5.03409e-165
CP027760.1\|AZF54587.1\|4474206_4476825_-\|Alanyl-tRNA-synthetase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
CP027760.1\|AZF54590.1\|4479092_4480097_-\|Succinylglutamate-desuccinylase	gnl\|CDD\|235408	PRK05324, PRK05324, succinylglutamate desuccinylase; Provisional.	3.27032e-176
CP027760.1\|AZF54585.1\|4472504_4472693_-\|Carbon-storage-regulator	gnl\|CDD\|234973	PRK01712, PRK01712, carbon storage regulator CsrA.	1.55463e-29
CP027760.1\|AZF54574.1\|4456450_4457278_-\|Chemotaxis-protein-methyltransferase-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	7.20226e-104
CP027760.1\|AZF54571.1\|4454553_4455273_-\|Flagellar-basal-body-rod-modification-protein-FlgD	gnl\|CDD\|235847	PRK06655, flgD, flagellar hook assembly protein FlgD.	3.52249e-74
CP027760.1\|AZF54576.1\|4458341_4459094_+\|Flagellar-basal-body-P-ring-formation-protein-FlgA	gnl\|CDD\|180794	PRK07018, flgA, flagellar basal body P-ring formation protein FlgA.	4.62096e-90
CP027760.1\|AZF54572.1\|4455289_4455733_-\|Flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|235556	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.	5.05598e-70
CP027760.1\|AZF54588.1\|4476971_4477976_-\|Low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	2.98143e-173
CP027760.1\|AZF54578.1\|4459607_4460078_+\|Flagellar-biosynthesis-protein-FlgN	gnl\|CDD\|377465	pfam05130, FlgN, FlgN protein. This family includes the FlgN protein and export chaperone involved in flagellar synthesis.	7.33727e-19
CP027760.1\|AZF54580.1\|4460984_4462406_-\|putative-MFS-type-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.95472e-99
CP027760.1\|AZF54575.1\|4457321_4458254_-\|Chemotaxis-protein-CheV	gnl\|CDD\|381151	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins. This subfamily includes the REC domains of Bacillus subtilis chemotaxis protein CheV, Myxococcus xanthus gliding motility regulatory protein FrzE, and similar proteins. CheV is a hybrid protein with an N-terminal CheW-like domain and a C-terminal CheY-like REC domain. The CheV pathway is one of three systems employed by B. subtilis for sensory adaptation that contribute to chemotaxis. It is involved in the transmission of sensory signals from chemoreceptors to flagellar motors. Together with CheW, it is involved in the coupling of methyl-accepting chemoreceptors to the central two-component histidine kinase CheA. FrzE is a hybrid sensor histidine kinase/response regulator that is part of the Frz pathway that controls cell reversal frequency to support directional motility during swarming and fruiting body formation. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.99305e-50
CP027760.1\|AZF54583.1\|4469796_4470123_+\|Alginate-biosynthesis-transcriptional-activator	gnl\|CDD\|367702	pfam03869, Arc, Arc-like DNA binding domain. Arc repressor act by he cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognize bases in the major groove.	9.67393e-15
CP027760.1\|AZF54573.1\|4455736_4456144_-\|Flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|180196	PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed.	3.69679e-68
CP027760.1\|AZF54579.1\|4460174_4460924_+\|Flagellar-brake-protein-YcgR	gnl\|CDD\|227868	COG5581, COG5581, c-di-GMP-binding protein [Signal transduction mechanisms].	1.63621e-46

>CP027760.1|AZF54580.1|4460984_4462406_-|putative-MFS-type-transporter
MPIALSPHCKEPLGTPMRQIWKSFRALYFASLMMLIGSGLLSTYLALRLAADNVDSLWVGALMAANYFGLVLGGKIGHRLIARVGHIRAYATCAGIVGAAVLGHGLIDWLPAWIVLRVIVGLGMMCQYMVIESWLNEQADAKQRGVVFSGYMIASYLGLVLGQLILVMHPHLGLELLMLVALCFALCLVPVAMTRRIHPAPLHPAPMEPRFFIKRVPQSLSTVLGAGLIVGSFYGLAPLYASQQGLTTEQVGLFMGSCIFAGLLVQWPLGWLSDRYDRALLIRCFALCLAVAALPLAIMTQVPLEMLFVAGFLCSLVQFCLYPLAVAFSNDHVEGDRRVSLTAMLLVTYGIGASIGPLLAGVLMKLFGSQMLYAFFSLCALILVWRIRPKAVTNLHQVDDAPLHHVAMPDSMSSSPLVAALDPRVDEQVVQEQMQATVPEPEPEPTVDEAVAQTPPESTDPDDHPHDLSRARP
>CP027760.1|AZF54579.1|4460174_4460924_+|Flagellar-brake-protein-YcgR
MFNALNAEDAPQPPKVLTTPLEIASTLRMLQESHDPLIITFHERSQRFQSYLVDIDRDNKTLALDEMIPRDGERYLENGEPFRIEGFHDGVRVAWESNGTLSISEKDGHRIYTGSMPGEVVYHQRRNAFRAALKLAQLVNIELGGEKLKAPFNGKLLDISATGCKLRFEGDISDRLQLGQVYDRFVAALPFGNMTTAVELRYLHFEDKINTTFAGVRFHNMSGLVQRQVERFVYQLQREARRFDKDDDF
>CP027760.1|AZF54578.1|4459607_4460078_+|Flagellar-biosynthesis-protein-FlgN
MHHDEHLLQLIIDDLAPTQQLLELLKEESLALYGRDMPLLEEILARKQSLIVLLEQHGKKRSEILTSLGLPADHDGLAQLASHSSVGDQLLAQSKELNQLLAQCQEANLLNGQSIQLQQATTANQLRILHGGEPPALYNAQGSTSRLVKPSTRSQA
>CP027760.1|AZF54577.1|4459235_4459559_+|Negative-regulator-of-flagellin-synthesis-FlgM-(anti-sigma28)
MVIDFNRLNSTQPLPGNTRTNGTKDSVEAKSQPLPAKAEQASASHSGESVHLSNEAQQLQKVTDSLRDQPIVNKARVAELKQAIADGTYTVDSNRVASKLLNFEAER
>CP027760.1|AZF54576.1|4458341_4459094_+|Flagellar-basal-body-P-ring-formation-protein-FlgA
MTVSRRPSRPKYRRLLCAAMALLVWGVGVAARADNVTLPDLLIGVTQGFLEFTVEDYLATTQTPGRYEIQVNPLDPRLRLPMCDKELTATLESPAQPIGRVTVKVRCESASPWTVFVPAQVKLFRDVVVVARPLKRTGIIGYDDVVLRERDISLINQGYLTSLEQAVGQRLTRPMVTDQVITLVHLEQAEVIRKGDQVVISASSGGLNVRMPGEALSNGGMSEQIRVKNLNSNRVIKARVTAPGQVEVAL
>CP027760.1|AZF54575.1|4457321_4458254_-|Chemotaxis-protein-CheV
MAGVMDSVNQRTQLVGQNRLELLLFRLDGKQLYGINVFKVREVLQCPKLTIMPKSSPVVCGVANIRGATIPILDLAMATGSAGLQDRQSPFVIITEYNTKTQGFLVRSVERIVNMNWEEIHPPPKGTGRDHYLTAVTRVDNQLVEIIDVEKILAEVAPTSETISVGVVDAETAHKAVSLRVLTVDDSSVARKQVTRCLQTIGVDVVALNDGRQALDYLRKLVDEGKKPEEEFLMMISDIEMPEMDGYTLTAEIRNDPRMQKLHIILHTSLSGVFNQAMVKKVGADDFLAKFRPDDLASRVVDRIKAADHG
>CP027760.1|AZF54574.1|4456450_4457278_-|Chemotaxis-protein-methyltransferase-CheR
MSTGNLDFEQFRVFLEKACGILLGENKQYLVSSRLNKLMEQQGIKSLGELVQRIQGQPRSGLKEMVVDAMTTNETLWFRDTYPFEVLKNKVLPAAIKASPGQRLRIWSAACSSGQEPYSISMSIDEFERTNMGQLKAGAQIVATDLSGTMLTNCKTGEYDSLALGRGLSPERLQRYFDPKGAGRWAIKAPIKNRVEFRSFNLLDSYASLGKFDMVFCRNVLIYFSAEVKKDILLRIHGTLKRGGYLFLGASEALNGLPDHYQMVQCSPGIIYQAK
>CP027760.1|AZF54573.1|4455736_4456144_-|Flagellar-basal-body-rod-protein-FlgB
MSISFDKALGIHEQALGFRAQRAEVLANNIANADTPNYKARDLDFSAVLAAQQDKTKNGTFALNMTNSRHIEAQGLSSGDESLLYRTPMQPSIDQNTVDAQLEQSNYAENSVNFQASFTLLNSKFKGLMSALRGE
>CP027760.1|AZF54572.1|4455289_4455733_-|Flagellar-basal-body-rod-protein-FlgC
MSLSSVFNIAGSGMSAQTTRLNTVASNIANAETVSSSIDQTYRARHPVFATMFQGGQSGGSDSLFQNQDAAGQGVQVLGVVEDQSNLEARYEPNHPAANEKGYVYYPNVNVVEEMADMISASRSFQTNAEMMNTAKTMMQKVLTLGQ
>CP027760.1|AZF54571.1|4454553_4455273_-|Flagellar-basal-body-rod-modification-protein-FlgD
MAIVDTSNNTAVQDLFNSKVKDASNNVANVSKAATGDQALGKDAFLQLLVTQLKNQNPLSPQDNGAFVAQLAQFSSLEGINTLNDSVNNISSNFSSSQALQASSLVGRSIITQTDKALVDTSKSMTGSVAVTAATGNVSVKITDKDGNVVRTLDLGAQSAGTSDFIWDGKNEAGEVAPAGTYTFAASTKNDKGDAVALATSLPATVTSVTLSKTGGEMLLNLAGGMGSVKLSQIQTIGT
>CP027760.1|AZF54581.1|4468994_4469222_+|hypothetical-protein
MNSALLLALNAMALTALVTFHFFPAKLQDPAQITQAVPHHLQQRPQLAVMTADPQSPIRLTQGTQATPTSEHWVF
>CP027760.1|AZF54582.1|4469233_4469413_+|hypothetical-protein
MSKSAWFFLCLTLATALLGLSNAMQNTRTLAFIASAVFGCLLILTLALGRRIKFDPILR
>CP027760.1|AZF54583.1|4469796_4470123_+|Alginate-biosynthesis-transcriptional-activator
MRPLKQAIYSSRTADKFVVRLPDGMRERIAEVARNHHRSMNSEIIARLEQSLIQEGALGEELSMRLDSPELSLHERELLQRFRQLSHRQQNALVSLIAHDVEAAAEAN
>CP027760.1|AZF54584.1|4470223_4471666_-|Mg/Co/Ni-transporter-MgtE,-CBS-domain-containing
MTEVEVKKTQESLQDRLAQVIELLQRQRVVEDLTHRQEGPHHDRVENLVHRQNLVELQRKLDDLHSADVAYILEALPLDDRLTLWQLVKADRDGDILLEVSDSVRETLIADMDDHELLAAAKEMDADELADLAPELPRDVVHELMEALDTQQRERVRSALSYDEDQVGALMDFEMVTIREDVSLEVVLRYLRRLKELPGHTDKLFVVDYEGILKGVLPIKRLLVNDPEKRVADLMASDTVSFHPDEDAYDAAQAFERYDLISAPVVDKNGKLIGRLTIDEIVDLIREESETEVLNMAGLREEEDIFASVWRSLHNRWAWLAVNLITAFIASRVIGLFEGSIEKLVALAALMPIVAGIGGNSGNQTITMIVRAMALDQVSTANSSRLLRKELAVGLINGLVWGGVIGVVAYLLYGSWSLGVVMTAAMTLNLLLAALMGVLIPMTLARLGRDPAMGASVMITAMTDSGGFFIFLGLATIFLL
>CP027760.1|AZF54585.1|4472504_4472693_-|Carbon-storage-regulator
MLILTRRCAESLIIGDGEITVTVLGVKGNQVRIGVNAPKEVAVHREEIYLRIKKEKDEEPSL
>CP027760.1|AZF54586.1|4472867_4474109_-|Aspartokinase
MALIVQKFGGTSVGSVERIEQVADKVKKFRDAGDDLVVVLSAMSGETNRLIDLAKAISGDQQPLPRELDVIVSTGEQVTIALLAMALNKRGVPAVSYTGSQVRILTDSAHTKARILQIDDQKIRADLKAGRVVVVAGFQGVDEQGNITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYTTDPRVVSVAQRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYNVPLRVLHSFKEGPGTLITIDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISGANIEVDMIVQNVSHDNTTDFTFTVHRNEYDAAERILQNTASEIGAREVIGDTKIAKVSIVGVGMRSHAGVASRMFEALAKESINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELDAPARQGE
>CP027760.1|AZF54587.1|4474206_4476825_-|Alanyl-tRNA-synthetase
MKSAEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRATSSQKCVRAGGKNSDLENVGYTARHHTFFEMLGNFSFGDYFKKDAITFAWTFLTGVLKLPEEKLWVTVYATDDEAYDIWTQQIGVPAERMIRIGDNKGAPYASDNFWTMGDTGPCGPCTEIFYDHGADIWGGPPGSPDEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERISAVMQHVHSNYEIDLFTNLLSASAAAIGCANEGQSSLKVVSDHIRSCGFLIADGVLPSNEGRGYVLRRIIRRACRHGNKLGATGSFFYKIVAALVAEMGDAFPELKQQQANIERVLKAEEEQFSKTLEHGLKILEQDLAELKGTVVPGDVVFKLYDTYGFPMDLTADIARERELTVDEAGFEREMEAQRVRARSASSFGLDYNTLVKVDVPTAFIGYKATAGAAKIVAIYKDGKSVDVLNEGDEAVVVLDQTPFYAESGGQIGDCGFLSSTSGRFDVRDTTKTGGAFLHHGVLVLGNLVVGAPVETQVDADVRHATALNHSATHLLHAALRQVLGEHVQQKGSLVNSQRLRFDFSHFEAIKPDQIKALEDIVNAEIRKNTPVETEETDIETARNKGAMALFGEKYGDEVRVLSMGGSFSVELCGGIHANRTGDIGLLKIISEGGVASGVRRIEAVTGAAALAYLNAAEEQLKEAAGLVKGSRDNLIDKLSAVLERNRALEKQLEQLQAKAASAAGDDLSASAVDVKDVKVLAARLDGQDGKALLALVDQLKNKLGRAVILLGSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGGGRPDMAQGGGVDAGALDAALALTVPFVEAGI
>CP027760.1|AZF54588.1|4476971_4477976_-|Low-specificity-L-threonine-aldolase
MTVIDLRSDTVTQPTPGMLDAMASAVSGDDVYGEDPSVNRLEAELARRLGFAAALFVPTGTMSNLLALMAHCERGEEYIVGQQAHTYKYEGGGAAVLGSIQPQPLEVQPDGSLDLDQVLAAIKPDDFHFARTRLLALENTMQGKVLPLAYLAKARAFTREHGLALHLDGARLYNAAVKLGVDAREIAGHFDSVSVCLSKGLGAPVGSVLCGSTALIAKARRLRKMVGGGMRQAGSLAAAGLYALDHQVQRLADDHANAQWLGDELRQAGYTVEPVQTNMVYVQIGDRAQALKAFAAERGIKLSAAPRLRMVTHLDVSRAQIEQVVQTFVAFSQK
>CP027760.1|AZF54589.1|4478450_4478960_+|6,7-dimethyl-8-ribityllumazine-synthase,-putative
MQPTAIDSKSKNHHGERVAFIQACWHKDIVDQSRKGFLAEMIAQGYQESDIDFFEVGGAFEMPLHAKLLAKTGRYAGIVAAALVVDGGIYRHEFVAQSVVSGLMQVQLETEVPVFSVSLTPHQFHGGSEHTTFFYEHFVHKGQEAARTCADTLHKVRAIRRSEPRAVAV
>CP027760.1|AZF54590.1|4479092_4480097_-|Succinylglutamate-desuccinylase
MLALGKLLELTLAGREPAQKIQLTVDGVQMRWLSEGALEVRPPEARDNGSDLLLSSGIHGNETAPIELLDRLLHGIARGEIKPRTRILFLFGNPEAMRRGERYLELDVNRLFNGRHESNIGPEAMRAAELEQLARSFFSQPGRSRLHYDLHTAIRGSKIEQFALYPWKEGRQHSRRELERLHAAGMQAVLLQNKTSITFTAFTYEQLDAEAFTLELGKARPFGHNEGVDVSRLELRLRQIIEGTEPATDSLDGMQLFAVAREVIKHSDAFLLHLPADVENFSELEKGYLLAEDVAKTRWVIEEEGARIIFPNPKVKNGLRAGILIVPTTDADLV

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Crispr_ID: CP027760_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027760_4

4962639-4962749

Orphan

Consensus_repeat	Method
GGGGTGCGCTCTAACCAACTGAGCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027760_4

>merge|CP027760|4|4962639-4962749|CRISPRCasFinder
GGGGTGCGCTCTAACCAACTGAGCTACAGACCCAATTTCGAGCTGCTAAGGCCGACCTCACCCTGCTCTTTACCACAAAGCATGGGGTGCGCTCTAACCAACTAAGCTACA

>CP027760|4|4|4962639-4962749|CRISPRCasFinder
GGGGTGCGCTCTAACCAACTGAGCTACA	GACCCAATTTCGAGCTGCTAAGGCCGACCTCACCCTGCTCTTTACCACAAAGCAT
GGGGTGCGCTCTAACCAACTAAGCTACA

Protein	Signature genes	Signature genes Name	Protein_function
CP027760.1\|AZF55039.1\|4971601_4972336_-\|TPR-domain-protein	unknown	unknown	gnl\|CDD\|276809
CP027760.1\|AZF55036.1\|4968622_4969114_-\|Acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
CP027760.1\|AZF55040.1\|4972352_4974677_-\|Multimodular-transpeptidase-transglycosylase	unknown	unknown	gnl\|CDD\|273952
CP027760.1\|AZF55038.1\|4971272_4971602_-\|Uncharacterized-protein-YqcC	unknown	unknown	gnl\|CDD\|377282
CP027760.1\|AZF55028.1\|4949595_4949715_-\|hypothetical-protein	unknown	unknown	unknown
CP027760.1\|AZF55023.1\|4944539_4946057_-\|Methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
CP027760.1\|AZF55032.1\|4964858_4965479_-\|Sulfoxide-reductase-heme-binding-subunit-YedZ	unknown	unknown	gnl\|CDD\|235452
CP027760.1\|AZF55022.1\|4943636_4944524_-\|3-hydroxyisobutyrate-dehydrogenase	unknown	unknown	gnl\|CDD\|130753
CP027760.1\|AZF55033.1\|4965478_4966492_-\|Sulfoxide-reductase-catalytic-subunit-YedY	unknown	unknown	gnl\|CDD\|235431
CP027760.1\|AZF55037.1\|4969116_4970841_-\|Acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|180578
CP027760.1\|AZF55024.1\|4946140_4947130_+\|Transcriptional-regulator,-LysR-family	unknown	unknown	gnl\|CDD\|223656
CP027760.1\|AZF55034.1\|4966555_4967413_-\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|224104
CP027760.1\|AZF55030.1\|4951807_4955479_-\|Exodeoxyribonuclease-V-beta-chain	unknown	unknown	gnl\|CDD\|236784
CP027760.1\|AZF55031.1\|4955475_4958928_-\|Exodeoxyribonuclease-V-gamma-chain	unknown	unknown	gnl\|CDD\|273633
CP027760.1\|AZF55026.1\|4947773_4949036_-\|Inner-membrane-protein-YfiN	unknown	unknown	gnl\|CDD\|182171
CP027760.1\|AZF55027.1\|4949032_4949599_-\|Uncharacterized-protein-YfiR	unknown	unknown	gnl\|CDD\|379335
CP027760.1\|AZF55041.1\|4974795_4976352_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225098
CP027760.1\|AZF55025.1\|4947277_4947769_-\|Integral-membrane-protein-YfiB	unknown	unknown	gnl\|CDD\|182172
CP027760.1\|AZF55035.1\|4967559_4968576_-\|Ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
CP027760.1\|AZF55029.1\|4949741_4951811_-\|Exodeoxyribonuclease-V-alpha-chain	unknown	unknown	gnl\|CDD\|273631

Protein	Function_ID	Function_description	E-value
CP027760.1\|AZF55039.1\|4971601_4972336_-\|TPR-domain-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	9.12626e-08
CP027760.1\|AZF55036.1\|4968622_4969114_-\|Acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	5.80396e-92
CP027760.1\|AZF55040.1\|4972352_4974677_-\|Multimodular-transpeptidase-transglycosylase	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
CP027760.1\|AZF55038.1\|4971272_4971602_-\|Uncharacterized-protein-YqcC	gnl\|CDD\|377282	pfam04287, DUF446, tRNA pseudouridine synthase C. This family is suggested to be the catalytic domain of tRNA pseudouridine synthase C by association. The structure has been solved for one member, as Structure 2HGK, which by inference is designated in this way.	1.55447e-41
CP027760.1\|AZF55034.1\|4966555_4967413_-\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	gnl\|CDD\|224104	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].	9.85359e-65
CP027760.1\|AZF55023.1\|4944539_4946057_-\|Methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
CP027760.1\|AZF55032.1\|4964858_4965479_-\|Sulfoxide-reductase-heme-binding-subunit-YedZ	gnl\|CDD\|235452	PRK05419, PRK05419, protein-methionine-sulfoxide reductase heme-binding subunit MsrQ.	2.69545e-76
CP027760.1\|AZF55022.1\|4943636_4944524_-\|3-hydroxyisobutyrate-dehydrogenase	gnl\|CDD\|130753	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase. 3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). [Energy metabolism, Amino acids and amines].	2.07128e-139
CP027760.1\|AZF55033.1\|4965478_4966492_-\|Sulfoxide-reductase-catalytic-subunit-YedY	gnl\|CDD\|235431	PRK05363, PRK05363, protein-methionine-sulfoxide reductase catalytic subunit MsrP.	0
CP027760.1\|AZF55037.1\|4969116_4970841_-\|Acetolactate-synthase-large-subunit	gnl\|CDD\|180578	PRK06466, PRK06466, acetolactate synthase 3 large subunit.	0
CP027760.1\|AZF55024.1\|4946140_4947130_+\|Transcriptional-regulator,-LysR-family	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.48478e-34
CP027760.1\|AZF55030.1\|4951807_4955479_-\|Exodeoxyribonuclease-V-beta-chain	gnl\|CDD\|236784	PRK10876, recB, exonuclease V subunit beta; Provisional.	0
CP027760.1\|AZF55031.1\|4955475_4958928_-\|Exodeoxyribonuclease-V-gamma-chain	gnl\|CDD\|273633	TIGR01450, recC, exodeoxyribonuclease V, gamma subunit. This model describes the gamma subunit of exodeoxyribonuclease V. Species containing this protein should also have the alpha (TIGR01447) and beta (TIGR00609) subunits. Candidates from Borrelia and from the Chlamydias differ dramatically and score between trusted and noise cutoffs. [DNA metabolism, DNA replication, recombination, and repair].	0
CP027760.1\|AZF55026.1\|4947773_4949036_-\|Inner-membrane-protein-YfiN	gnl\|CDD\|182171	PRK09966, PRK09966, diguanylate cyclase DgcN.	1.18846e-82
CP027760.1\|AZF55027.1\|4949032_4949599_-\|Uncharacterized-protein-YfiR	gnl\|CDD\|379335	pfam13689, DUF4154, Domain of unknown function (DUF4154). This family of proteins is found in bacteria. Proteins in this family are typically between 172 and 207 amino acids in length. Many members are annotated as valyl-tRNA synthetase but this could not be confirmed.	2.64119e-39
CP027760.1\|AZF55041.1\|4974795_4976352_+\|hypothetical-protein	gnl\|CDD\|225098	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown].	1.02578e-153
CP027760.1\|AZF55025.1\|4947277_4947769_-\|Integral-membrane-protein-YfiB	gnl\|CDD\|182172	PRK09967, PRK09967, OmpA family protein.	5.01162e-37
CP027760.1\|AZF55035.1\|4967559_4968576_-\|Ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
CP027760.1\|AZF55029.1\|4949741_4951811_-\|Exodeoxyribonuclease-V-alpha-chain	gnl\|CDD\|273631	TIGR01447, recD, exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. [DNA metabolism, DNA replication, recombination, and repair].	0

>CP027760.1|AZF55031.1|4955475_4958928_-|Exodeoxyribonuclease-V-gamma-chain
MPGATSLSAGFMVVHGNRLDELRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAEDPQEDDMGGCGIAAAIDVQLPGSFMWQLYRMVLGRDEIPPKSLLDKAPLTWRLMRLLPQLIDQPHFEPLQRFLTHDTDLRKRYQLAERLADLFDQYQVYRADWLEDWAAGRHQLRNGRGESKPLNTANCWQAELWRALLLDVGAQGMAESRAGVHQRFIERINTLEQAPPGLPSRVIVFGISSLPAQALEALAGLARFSQVLLCVHNPCRHHWSDIVADKDLLRNEYKRQARKAGMPVTIDPQTLHQHAHPLLAAWGKQGRDYISLLDSYDDPNSYRAAFRDGRIDLFSDSQPTTLLNQLQDDILELRPLDETRELWPAVDLKRDSSIRFHIAHSAQREVEILHDQLLQRFSADPTLRPRDIIVMVPDVDSYAPHIRAVFGQLERNDPRFIPFTLTDQGQRGRDPLLIAVEHLLKLPDSRFPVSEILDLLDVPALRERFAINERDLPTLHRWIEGAGIRWGLNAEQRAGLGLPEALEQNSWRFGLRRMLLGYAVGTGVACDGIEPYDEIGGLDAALIGPLVALLDALNDAHQALSQPAPPQVWGERLQRLMQQFFLPSSEHDDYLLGQLEQLRETWLETCESVGLQDELPLTVVREAWLAGLDQGRLSQRFLAGAVNFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRPGDRSRREDDRYLLLEALLSARDQLYISWVGRSIRDNSERPASVLIGQLRDHLASGWHNADSQEALIEAMTQEHPLQPFSARYFHEGDPLFSYAREWQLLHEAPAAMAHDHALAPHHQEEPLSLGQLQDFLRNPVKHFFSQRLKVFFEAAEVPLADEEPFVLDALQRYSLSDSLLSAALARPDQLDQALNAQALRLQGSGLLPMVGFGECLRNELIEPLPDLLQRYQHLLALWPTPHAGAEPISFEYQGIQLEGWISGLHRRSDGGLLSVTTIPNSIGSIKTRKWHRLIRPWVNHVVACACGVPLSTGLVASDDTLLLAPLDTATAQHILADLLLAWHTGMSKPLPVAVKTAFAWLGQTDPAKAHAAASKAYEGDGITTDGERRETPALTRQFPDYATLVASEEFEGWCETLYRPLISAPWRSLSSAEAGA
>CP027760.1|AZF55030.1|4951807_4955479_-|Exodeoxyribonuclease-V-beta-chain
MSNKPLALAFPLKGSQLIEASAGTGKTFTISALYLRLVLGNGGDESGFGRELLPPQILVVTFTDAATKELRERIRIRLAEAARFFRGEIEPPDALIADLRNQYPEEQWPACANRLDIAAQWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMHDDALNWVRNNWGGPAALMPRVRALFGSERPAEDSREPADMITACLQERREALTRIKAPWLQWAAELRELCLQAVAAKAVDGRKMQARYFEPWFEKISAWAADETLEQLDIGTGFTRLTPDGMAEAWKGEPPRHPGIDGMAGLKAALDALPTPDAAVLQHAASWVGKRFEEEKRRRAEMGFDDMLIRLNAALQADGGERLASVIREQFPVALIDEFQDTDPVQYSIFDSIYRIEENHLDSGLFLIGDPKQAIYAFRGADIYTYLRARQSTTGRHHTLGTNFRSSHAMVEAVNHVFQRAETGRGAFLFREPDGHNPVPFHPVLSQGRKEQLQVDGHTLPAMNLWHLPTDQPISNVLYRQQLAAACATHIVALLNGGQQGSAGFVKDNTFNGVLPSDIAILVRDGKEAQAVRAELAARGVRSVYLSDKDSVFAAQEAHDLLAWLKACAEPDVERPLRAALACVTLNLSLAELERLNQDELAWESRVMQFRGYRSIWRTQGVLPMLRRLLHDFKLPQTLIARSDGERVLTNLLHLSELLQQAASELDGEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYDLVFLPFICSAKPVDGTRLPLHYHDEQGKSHVSLRPTAELIAQADDERLAEDLRLLYVALTRAKHACWLGIADLKRGNGSSSVLHLSALGYLLGAGAPLGESADLARWLMALQEGCPTISYGHVPQAQDTVFHPPRNEATLLAPLLPKRKAAENWWIASYSALRIGDSMSAANLEAPESPQAQKLFDDERLDPDAPREVAASGGDIHRFPRGPNPGTFLHGLLEWAGEEGFNLSPEAIEKAVGARCNRRHWEGWIVTLSAWLGHLLQTPLPVYDDRVSLSALQQYQIEMEFWFASHKVDVLALDKLVCQYTHHGVSRVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNWLGPDDSAYTLEAMEQSILEHRYDLQYVLYLLALHRQLKARLPDYDYERHIGGALYLFLRGTQSVSQGAYFTRPPRELIEGLDLLFQGKPIPPKAEPAWEQGVLL
>CP027760.1|AZF55029.1|4949741_4951811_-|Exodeoxyribonuclease-V-alpha-chain
MSLSPLLPQELTPLSRAADLVQLLERWVERGWLRALDKAFVGFLHELDPEADPLVLLAAALTSHQLGHGHVCLDLFETLKAPDFALSLPPEGDLQTGAMLLPSQLLEGLDGAHWCHALAASPLVALAVDGSESARSRPLVLSGKRLYLRRYWAYERRIDSALRLRLASHESVATDLPQRLNGLFDQPAPDGVIDWQKLACALATRGAFSIVTGGPGTGKTTTVVRLLALLQAPAVESGNPLRIRLAAPTGKAAARLTESISQQVLSLKVPDTVREKIPTQVTTVHRLLGSRPGTRHFRHHVGNPLPLDVLVVDEASMIDLEMMANLLDALPPHARLVLLGDKDQLASVEAGAVLGDLCRDAEAGWYSPATRQWLQAVSAENLADSGLQEDLDGTHPLAQQVVMLRYSRRFGEGSGIGQLARWVNQQNAEQARKLLAARSHDDLFCLSLKGEHDHALERVVLDGQGAGAQGYRYYLNLLHSARPALDTPRDDHTWTHWAQQLLQAFDAFQLLCAVRKGPWGVEGLNLRITAALHKVRLIEGDEQWYEGRPVLMTRNDYGLGLMNGDIGIALKLPESDGGPQVLRVAFPRNDGQGGVRFVLPSRLNDVETVYAMTVHKSQGSEFTHTALILPDALNPVLTKELIYTGITRAKRWFSLIEPRAGVFEEAVRRRVKRLSGLMLELDATPAEAD
>CP027760.1|AZF55028.1|4949595_4949715_-|hypothetical-protein
MTDFSEKIVSPAKTPASWDFPPLCYRCGITLKFLERIAA
>CP027760.1|AZF55027.1|4949032_4949599_-|Uncharacterized-protein-YfiR
MNVAVSLTERSLSWRRLLRVAVLCLLAPQAWAQTSSPAEQRAQAVTQVVLGILSYARWPVEPAQLRLCIVGPTQYTDDLIKGTTQATGRPVTVRRLLASNTDIVSACDAVYIGKLSADERSALFTSLMGHPVLSISEGGDQCTVGSLFCLRVSDAQVSFEVNLDSVARSGVRIHPSVLQLSRRRAPAP
>CP027760.1|AZF55026.1|4947773_4949036_-|Inner-membrane-protein-YfiN
MKAAKARPTLGSVIGRGHLILALVAVTLASVSLTLLGVLALRVYAEHNLHLIARSINYTVEAAVVFDDSAAATEALSLIASTEEVAQAEVFDASGKLLAQWVRPNTGMLSRVELELAHALLEQPISQPILHQGQTVGSIHLTGHGGSLLRFLLSGLAGIVICTALSAWVALHLARRLLNGITGPLQSLAAVAHAARSERDFDRRVPPAQIAELDSLGSDFNALLGEMEAWQNHLQSENETLAHQASHDSLTGLPNRAFFEGRLIRALRSAAKTNERVAVLFLDSDRFKDINDNFGHAAGDAVLMAVAERVRAQLREDDLVARLGGDEFAVLLAPLHKAEDAQRIADKIIASMDAPIPLPGNTQVVTSLSIGIAIYPEHGATPGTLLNAADAAMYQAKRLSSGSQQTAESEHSVVNVQHRS
>CP027760.1|AZF55025.1|4947277_4947769_-|Integral-membrane-protein-YfiB
MFSNLRVLFITLLVACLALGGCQTPPAKGLTPAQVTVLKQQGFELTDEGWAFGLSGKVLFGSDVESLNTPSTDIVERIGKALVGAGIERVRVEGHTDASGKETYNQTLSLRRAKSVGEVLTRVGMKEQNIQLRGLGSSEPVAANTTTAGRTENRRVSIVVIAD
>CP027760.1|AZF55024.1|4946140_4947130_+|Transcriptional-regulator,-LysR-family
MQISNKNAHKSRSNMQKNITSLGSLNWDDLKFFLEVARTRKASVAAKRLAVDYTTVSRRISSLEVSLGTLLFEKSRTNGFVLTTEGQRLLGYAESIESTLHMACEQVSGSGVALSGHVRMGCTEGFGSFFITPQLSHFVDTYPAISVDILPLPHFISLSKREADIVIALERPEHGPYVCCKLCDYKLQLYATQQYLDQHPPIRKSADLAEHPFISYVDDLAFSSELLYLANVVPGASASLRSTSVIAQYVAAQQGRSMAILPCFLAAQDPRLLPVLGEQIAITRQFWMYCREDLRKLKRITLLWDYIREVTEQNRGLLMGETREMRFAD
>CP027760.1|AZF55023.1|4944539_4946057_-|Methylmalonate-semialdehyde-dehydrogenase
MNASADISVQQVKLLINGEWVESKTTEWQDIVNPATQQVLAKVPFATADEVNAAIDAAHRAFQTWKLTPIGARMRIMLKLQALIREHSKRIAVVLSAEQGKTIADAEGDIFRGLEVVEHACSIGTLQMGEFAENVAGGVDTYTLRQPIGVCAGITPFNFPAMIPLWMFPMAIACGNTFVLKPSEQDPLSTMLLVELALEAGVPAGVLNVVHGGKDVVDALCTHKDIKAVSFVGSTAVGTHVYDLAGKHGKRVQSMMGAKNHAVVLPDANREHTLNALVGAGFGAAGQRCMATSVVVLVGAARQWLPNLKALAQKLKVNAGSEAGTDVGPVISKRAKARILELIESGVKEGAKLELDGRDIKVPGFEHGNFVGPTLFSGVTTDMRIYTEEIFGPVLVVLEVDTLDEAIALVNANPFGNGTGLFTQSGAAARKFQSEIDVGQVGINIPIPVPVPFFSFTGSRGSKLGDLGPYGKQVVQFYTQTKTVTSRWFDDDTVNDGVNTTINLR
>CP027760.1|AZF55022.1|4943636_4944524_-|3-hydroxyisobutyrate-dehydrogenase
MKIAFIGLGNMGAPMARNLIKAGHALNLFDLNQTVLKELAELGGRISDSPRNAAQGAELVITMLPAAAHVRSVWLNEDGVLAGIGEGIPAVDCSTIDPQTARDVAAAAARQGVVMADAPVSGGTGGAQAGTLTFMVGATPDLFATLQPVLAHMGRNIVHCGEVGTGQIAKICNNLLLGISMIGVSEAMALGDALGIDTQVLAGIINSSTGRCWSSDTYNPWPGVIETAPSSRGYTGGFGADLMLKDLGLATEAARQAKQPVILGAVAQQLYQSMSQRGEGGKDFSAIINSYRKPQ
>CP027760.1|AZF55032.1|4964858_4965479_-|Sulfoxide-reductase-heme-binding-subunit-YedZ
MRYPIWRIGVFIAAAVWPLFWLYEAWSFALGPDPGKVLVDRLGLGTLILLLITLAMTPLQKLSGWPGWIAVRRQLGLWCFAYVVLHLAAYCVFVLGLDWSQLGVELRKRPYIIVGALGFLSLLVLALTSNRYSQRRLGSRWKKLHRLVYVILGLGLLHMLWIVRADLKEWAIYASIGALLLLLRVPPVMRRIPRLITKKAPAATKA
>CP027760.1|AZF55033.1|4965478_4966492_-|Sulfoxide-reductase-catalytic-subunit-YedY
MLIKIPKASDCHESDVTPESFYLSRRSLLGGALAGIAASSLPRWASAEEAARYADVEPGRAPDWFTQKLPGTKWQAVTVKGEAITPFKDATHYNNFYEFGTDKGDPAANAGSLKTEPWSVVIDGEVAKPGRYALEDFMKPYELEERIYRLRCVEAWSMVIPWIGFPVSALLKQVEPTSRAKFIRFETLQDPKSMPGQRSSFGLIDWPYVEGLRLDEAMNPLAILAVGMYGRELPNQNGAPLRLVVPWKYGFKSVKSIVRISLVSEQPKTTWQSIAADEYGFYANVNPTVDHPRWTQARERRLPSGLFSPNVRETQMFNGYADEVAALYTDLDLKKNY
>CP027760.1|AZF55034.1|4966555_4967413_-|CDP-diacylglycerol--serine-O-phosphatidyltransferase
MSERPEEPSQASDAESLLPIDEHVEEGHDAEGRKVRHRGIYLLPNLFTTANLFAGFYSIINSMSAQSALAAGDAASASKYFGFAAIAIFVAMVLDGLDGRVARMTNTQSAFGAEYDSLSDMVAFGVAPALLAFAWALGDMGKVGWMVAFIYVAGAALRLARFNTQVGTADKRYFIGLASPAAAGVVAGIVWAFSDYGIQGSKMSFLVALMVAAAGMLMVSNIKYNSFKEFDLKGRVPFVAILVVVLVFAVVFSDPPRILLLAFLVYAASGPVQYLLHLRRDKTLP
>CP027760.1|AZF55035.1|4967559_4968576_-|Ketol-acid-reductoisomerase
MKVYYDKDCDLSIIQGKKVAIIGYGSQGHAQACNLKDSGVDVTVGLRKGSATVAKAEAHGLKVTDVASAVAASDLVMILTPDEFQSALYKNEIEPNIKKGATLAFSHGFAIHYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALSYAAGVGGGRTGIIETTFKDETETDLFGEQAVLCGGTVELVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMYEGGIANMNYSISNNAEYGEYVTGPEVINAESRQAMRNALKRIQDGEYAKMFISEGATGYPSMTAKRRNNAAHGIEIIGEQLRSMMPWIGANKIVDKAKN
>CP027760.1|AZF55036.1|4968622_4969114_-|Acetolactate-synthase-small-subunit
MRHIISLLLENEPGALSRVVGLFSQRNYNIESLTVAPTEDPTLSRLTLTTVGHDEVIEQITKNLNKLIEVVKLVDLSESAHIERELMLVKVKATGAQRAEIKRTTDIYRGQIVDVSASVYTVQLTGTSDKLDSFIQSIGTASILETVRSGVTGIARGDKVLSI
>CP027760.1|AZF55037.1|4969116_4970841_-|Acetolactate-synthase-large-subunit
MELLSGGEMLVRFLRDEGVDYIYGYPGGALLHVYDALFKEPAVTHILVRHEQAATHMADGYARATGKAGVVLVTSGPGATNAITGIATAYMDSIPMVIISGQVASTMVGTDAFQETDMIGISRPIVKHSFMIKHASEIPEIMKKAFYLAQSGRPGPVVVDIPKDMTNPAEKFEYIFPKKAKLRSYSPAVRGHSGQIRKAAEMLLAAKRPVLYSGGGVILGGGSAPLTELAKLLNLPVTNTLMGLGAFPGSDRQFVGMLGMHGSYTANLAMHHADVILAVGARFDDRVINGASKFCPNAKIIHIDIDPASISKTIKADVPIVGPVESVLTEMVAALKDIGETPNKESVASWWKQIDEWRGDRGLFPYDKGDGSIIKPQTVIETLCEVTKGDAFVTSDVGQHQMFAAQYYKFDKPNRWINSGGLGTMGFGFPAAMGVKLSFPDADVACVTGEGSIQMNIQELSTCLQYGLPVKIVCLNNGVLGMVRQWQDMSYGSRHSHSYMESLPDFVKLVEAYGHVGMRITDLKDLKPKMEEAFAMKDRLVFIDIQVDTSEHVYPMQIKDGSMRDMWLNKTERT
>CP027760.1|AZF55038.1|4971272_4971602_-|Uncharacterized-protein-YqcC
MDGRFPAIAEQLLLIERELRVQGWWDEVPPSAEALSSVEPFSVDTLDFHQWLQWIFLVRMKQILEHDLPLPNASGILEMAEMVYADRPRESLGLRNALKKFDQLIADAG
>CP027760.1|AZF55039.1|4971601_4972336_-|TPR-domain-protein
MNKLWIPAITVLALLGGCSSVQRGSIPVVDSSTNVSNNDRISANGGFRQTVTNRPAQAKPQAMPQDSGVVVMVPGSGAATAAPISAEPWTPGPGTSAPIDSTPIQTAPVNQGTYTMPSTPSGIPSSSSAGGLSADEQLDGPVLALLTTAQQQQAGGDLNGASSSLERAQRVAPREPQVLYRLAQVRLAQGDAPQAEQFARRGLTLANGRPDLQASLWGLIGDARAAQGDAAGAAQARAKAKVSL
>CP027760.1|AZF55040.1|4972352_4974677_-|Multimodular-transpeptidase-transglycosylase
MTRTRSPRSRKKPPSRSLRPWLGWALKLGLVGLVALAGVAVYLDAVVQEKFSGKRWTIPAKVYARPLELFAGQKLSKEDFLTELDALGYRREPVSNGPGAAAVSGNTVDLNTRGFQFYEGLEKAQPVRVRFSGDYVAELSSLNGAKLPVVRLEPLMIGGIYPKNLEDRILIKLDQAPPYLLETLVAVEDRDFYSHWGVSPKSIARAVWVNTSGGKMTQGGSTLTQQLVKNFYLTNERSLTRKLTEAMMAMLLELHYSKQEILEAYLNEVFVGQDGQRAVHGFGLASQFFFGQPLSELKLHQVALLVGMVKGPSYYNPRRNPERALERRNLVLDVLEQQGVATAEQVAAAKKMPLGVTTRGKLADSSFPGFIDLVKRQLREDYRDEDLTEEGLRIFTSFDPILQMKAEASVNDTFKRLTGRKGSDEVEAAMVVTNPETGEVQAMIGSRQASFAGFNRALDAVRPIGSLVKPAVYLTALEKPSKYTLTSWLSDDPLSIKGADGQVWTPKNFDRRSHGTVFLYQGLAHSYNISTSRLGLEVGVPNVLKTLARLGIEREFPAFPSMLLGAAAMSPMEVATMYQTLANGGFNTPMRGIRSVLTAEGEPLKRYPFQIQQRFDAGSIYLIQNAMQRVMREGTGRSVYSVLPSNLTLAGKTGTSNDSRDSWFAGFGQDVLAVVWLGRDDNGKTPFTGATGALQVWTSFMRKADPLPLNMPQPDNIVQAWIDPHTGQGSDANCPGAVQMPYIRGSEPPAGAACGGSAPADAESVMDWVKGWMN
>CP027760.1|AZF55041.1|4974795_4976352_+|hypothetical-protein
MSQSLIAALQNPALYPHPVEAFQVIETHISWVILTGPYAYKLKKPMNFGFLDFTDLEKRGHFCNEELRLNQRLTEDLYLEVLPITGTADAPQLAGDGPVIEYALKMRQFPQSQMLSTLQANGELSSAHIDEMARQIAHFHLNAPKVAQEHPAGTPEEVMAPVRQNFEQIRPFLSDKADLIQLEALQAWAQSSFERLKPLLEQRKLNGFTRECHGDIHLGNATLIDGHVVIFDCIEFNEPFRFTDVYADTAFLAMDLEDRGLKCLARRFISQYLELTGDYQGLELLNFYKAYRALVRAKVALFSMPSEADPVQRATTLRQYRNYANLAESYSTIPSRFLAITHGVSAVGKSHVAMRLVEALGAVRLRSDVERKRLFGEQQVENTPQAGIYSDDASAATYTRLNEIADTVLRAGFPVVLDATFLKREQRDAAARVAEATGAPFLILDCNAPQAVIASWLAQRQADKNDPSDATLVVIEEQNASRDPLTAQELLLSKRVETNESGTLDALVGHIRQRLPGL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1243833 : 1327339

Pseudomonas_phage(31.71%)

tRNA,plate,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF51589.1\|1243833_1244304_+\|tRNA	Cys-tRNA(Pro) deacylase YbaK	NA	NA	NA	NA
AZF51590.1\|1244426_1245470_-	Ferric iron ABC transporter, ATP-binding protein	Q6GZ03	Mycoplasma_phage	3.3e-20	37.1
AZF51591.1\|1245466_1246390_-	Ornithine carbamoyltransferase	A0A1J0F9B8	Only_Syngen_Nebraska_virus	1.2e-18	27.4
AZF51592.1\|1246820_1248929_+	Formate dehydrogenase-O, major subunit	NA	NA	NA	NA
AZF51593.1\|1249028_1249367_+	Glutaredoxin-related protein	NA	NA	NA	NA
AZF51594.1\|1249558_1250029_-	Bacterioferritin	NA	NA	NA	NA
AZF51595.1\|1250228_1250447_-	Bacterioferritin-associated ferredoxin	NA	NA	NA	NA
AZF51596.1\|1250692_1251295_+	Alkyl hydroperoxide reductase subunit C-like protein	NA	NA	NA	NA
AZF51597.1\|1251359_1252034_-	Ribonuclease T	NA	NA	NA	NA
AZF51598.1\|1252030_1253077_-	Dihydroorotase	NA	NA	NA	NA
AZF51599.1\|1253233_1254142_+	Sodium-type flagellar protein motY precursor	NA	NA	NA	NA
AZF51600.1\|1254271_1255489_+	Argininosuccinate synthase	NA	NA	NA	NA
AZF51601.1\|1256117_1256750_+	Two-component transcriptional response regulator, LuxR family	NA	NA	NA	NA
AZF51602.1\|1256837_1257020_-	hypothetical protein	NA	NA	NA	NA
AZF51603.1\|1257126_1257765_-	Endonuclease III	NA	NA	NA	NA
AZF51604.1\|1257834_1258809_-	Electron transport complex protein RnfB	NA	NA	NA	NA
AZF51605.1\|1258895_1260947_-\|tRNA	Methionyl-tRNA synthetase	NA	NA	NA	NA
AZF51606.1\|1261119_1262214_+	[4Fe-4S] cluster assembly scaffold protein Mrp (ApbC)	NA	NA	NA	NA
AZF51607.1\|1262741_1264160_-	Mobile element protein	NA	NA	NA	NA
AZF51608.1\|1264269_1264593_-	4Fe-4S dicluster domain	NA	NA	NA	NA
AZF51609.1\|1264735_1267327_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	9.6e-29	21.5
AZF51610.1\|1267510_1267882_-	hypothetical protein	NA	NA	NA	NA
AZF51611.1\|1267874_1268363_-	GepA protein	D0UIM3	Aggregatibacter_phage	6.4e-27	44.5
AZF51612.1\|1268625_1269360_+	Transcriptional regulator	B5TK58	Pseudomonas_phage	1.1e-118	87.3
AZF51613.1\|1269338_1269494_+	hypothetical protein	NA	NA	NA	NA
AZF51614.1\|1269546_1269666_+	hypothetical protein	NA	NA	NA	NA
AZF51615.1\|1269949_1270288_+	Holin	B5TK61	Pseudomonas_phage	2.8e-45	81.8
AZF51616.1\|1270307_1270823_+	hypothetical protein	NA	NA	NA	NA
AZF51617.1\|1270826_1271435_+\|plate	Baseplate assembly protein V	A0A2H4JBW8	uncultured_Caudovirales_phage	3.8e-45	52.8
AZF51618.1\|1271447_1271780_+\|plate	Baseplate assembly protein W	A0A2H4JI46	uncultured_Caudovirales_phage	1.0e-36	69.1
AZF51619.1\|1271776_1272772_+\|plate	Phage-related baseplate assembly protein	A0A2H4JC04	uncultured_Caudovirales_phage	2.0e-112	64.4
AZF51620.1\|1272768_1273407_+\|tail	Phage tail fiber	A0A2H4JDK0	uncultured_Caudovirales_phage	2.5e-39	52.5
AZF51621.1\|1273403_1273937_+\|tail	Phage tail fiber protein	A2I2X8	Vibrio_virus	1.2e-47	61.4
AZF51622.1\|1273963_1274584_+	hypothetical protein	NA	NA	NA	NA
AZF51623.1\|1274596_1274854_+	hypothetical protein	A0A1L5C071	Aquamicrobium_phage	3.6e-05	48.5
AZF51624.1\|1274939_1275113_+	hypothetical protein	NA	NA	NA	NA
AZF51625.1\|1275115_1276282_+\|tail	Major tail sheath protein	B0ZSG8	Halomonas_phage	1.2e-124	57.0
AZF51626.1\|1276281_1276788_+	hypothetical protein	Q6R4W3	Vibrio_virus	1.3e-22	34.5
AZF51627.1\|1276968_1277541_+	hypothetical protein	B0ZSH0	Halomonas_phage	1.6e-29	41.7
AZF51628.1\|1277549_1277663_+	hypothetical protein	NA	NA	NA	NA
AZF51629.1\|1277668_1279489_+\|tail	Phage tail length tape-measure protein	NA	NA	NA	NA
AZF51630.1\|1279488_1279872_+	Phage protein	B0ZSH2	Halomonas_phage	1.0e-35	59.8
AZF51631.1\|1279864_1280077_+\|tail	P2-like prophage tail protein X	A0A2H4JGD9	uncultured_Caudovirales_phage	1.1e-18	62.9
AZF51632.1\|1280086_1281097_+\|tail	Phage tail protein D	A0A2H4JH05	uncultured_Caudovirales_phage	1.8e-100	56.0
AZF51633.1\|1281164_1281362_+	hypothetical protein	NA	NA	NA	NA
AZF51634.1\|1281454_1281946_+	Acyl-CoA dehydrogenase	H2BDC0	Pseudomonas_virus	1.0e-48	62.2
AZF51635.1\|1281954_1282305_+	hypothetical protein	NA	NA	NA	NA
AZF51636.1\|1282346_1282589_+	Phage protein	A0A0U4J8S9	Pseudomonas_phage	9.0e-14	50.0
AZF51637.1\|1282651_1283830_+\|tail	Phage tail length tape-measure protein 1	A0A0S2SYD9	Pseudomonas_phage	7.2e-16	27.6
AZF51638.1\|1283858_1284197_+\|tail	Phage minor tail protein	K7PHL4	Enterobacterial_phage	8.7e-31	52.7
AZF51639.1\|1284257_1284941_+\|tail	Phage minor tail protein	A0A2I6PIA7	Pseudomonas_phage	8.0e-84	64.7
AZF51640.1\|1284943_1285717_+\|tail	Phage tail assembly protein	A0A2I6PI52	Pseudomonas_phage	1.4e-81	54.1
AZF51641.1\|1285750_1286380_+\|tail	Phage tail assembly protein I	A0A2I6PI69	Pseudomonas_phage	7.7e-49	52.2
AZF51642.1\|1286415_1287036_+\|tail	Phage tail assembly protein I	C7BGD3	Burkholderia_phage	6.4e-48	51.5
AZF51643.1\|1287095_1290947_+\|tail	Phage tail fiber protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	1.7e-276	48.2
AZF51644.1\|1291057_1291225_+	hypothetical protein	NA	NA	NA	NA
AZF51645.1\|1291224_1291932_+	hypothetical protein	NA	NA	NA	NA
AZF51646.1\|1292042_1293146_+	hypothetical protein	A0A1B0VMK1	Pseudomonas_phage	3.7e-06	52.7
AZF51647.1\|1293145_1293466_+	hypothetical protein	NA	NA	NA	NA
AZF51648.1\|1293563_1293728_+	hypothetical protein	NA	NA	NA	NA
AZF51649.1\|1293793_1294888_+	hypothetical protein	A0A1B0VMK1	Pseudomonas_phage	1.5e-10	33.3
AZF51650.1\|1294884_1295238_+	hypothetical protein	A0A0A0YUD8	Pseudomonas_phage	1.7e-08	43.0
AZF51651.1\|1295230_1295422_+	hypothetical protein	NA	NA	NA	NA
AZF51652.1\|1295418_1295970_+	Lytic enzyme	B5TK83	Pseudomonas_phage	1.8e-73	72.9
AZF51653.1\|1295957_1296458_+	hypothetical protein	A0A2H4IZW4	uncultured_Caudovirales_phage	1.4e-32	57.7
AZF51654.1\|1296539_1297040_+	Nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	3.7e-70	83.1
AZF51655.1\|1297123_1298182_+	RecA protein	A0A0S2MVG1	Bacillus_phage	2.4e-111	62.4
AZF51656.1\|1298235_1298658_+	Regulatory protein RecX	NA	NA	NA	NA
AZF51657.1\|1298719_1299832_-	Decarboxylase family protein	NA	NA	NA	NA
AZF51658.1\|1300115_1300550_-	Putative NADPH-quinone reductase (modulator of drug activity B)	NA	NA	NA	NA
AZF51659.1\|1300887_1301448_+	putative conserved protein YfiP, contains DTW domain	NA	NA	NA	NA
AZF51660.1\|1301474_1301666_-	hypothetical protein	NA	NA	NA	NA
AZF51661.1\|1301699_1302350_+	Transcriptional regulator, LuxR family	NA	NA	NA	NA
AZF51662.1\|1302425_1302788_+	Diacylglycerol kinase	NA	NA	NA	NA
AZF51663.1\|1302791_1303718_-	LysR family transcriptional regulator	NA	NA	NA	NA
AZF51664.1\|1303841_1304621_+	Ferredoxin--NADP(+) reductase	NA	NA	NA	NA
AZF51665.1\|1304734_1305430_-	S-adenosylmethionine-dependent methyltransferase YaeB	NA	NA	NA	NA
AZF51666.1\|1305433_1305895_-	Uncharacterized protein YehS	Q9EYF4	Enterobacteria_phage	2.2e-37	51.3
AZF51667.1\|1305965_1306676_-	Ribosomal large subunit pseudouridine synthase F	NA	NA	NA	NA
AZF51668.1\|1306785_1307256_-	Acetyltransferase	NA	NA	NA	NA
AZF51669.1\|1307356_1308697_-	Ribosomal protein S12p Asp88 methylthiotransferase	NA	NA	NA	NA
AZF51670.1\|1308986_1310888_+	Kup system potassium uptake protein	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	2.1e-73	32.9
AZF51671.1\|1311038_1312145_+	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA
AZF51672.1\|1312366_1312552_+	hypothetical protein	A0A2H4JHW7	uncultured_Caudovirales_phage	1.2e-05	42.6
AZF51673.1\|1312703_1314329_-	Glucans biosynthesis protein D precursor	NA	NA	NA	NA
AZF51674.1\|1314631_1315339_+	putative membrane protein	NA	NA	NA	NA
AZF51675.1\|1315528_1317151_+	Methyl-accepting chemotaxis protein	NA	NA	NA	NA
AZF51676.1\|1317150_1317663_+	Chemotaxis signal transduction protein	NA	NA	NA	NA
AZF51677.1\|1317659_1318919_+	Chemotaxis protein methyltransferase CheR	NA	NA	NA	NA
AZF51678.1\|1318915_1319617_+	Chemotaxis signal transduction protein	NA	NA	NA	NA
AZF51679.1\|1319613_1321881_+	Sensor histidine kinase/response regulator	Q56AR1	Bacillus_thuringiensis_phage	2.8e-08	27.4
AZF51680.1\|1321877_1322888_+	Chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA
AZF51681.1\|1322940_1323942_+	Two-component transcriptional response regulator, LuxR family	A0A127AWB9	Bacillus_phage	1.6e-16	35.8
AZF51682.1\|1324492_1324618_-	hypothetical protein	NA	NA	NA	NA
AZF51683.1\|1324897_1325740_+	Peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	1.5e-07	46.6
AZF51684.1\|1325836_1327339_+\|tRNA	Lysyl-tRNA synthetase (class II)	A0A2K9KZX5	Tupanvirus	7.2e-85	39.6

DBSCAN-SWA_2

1400824 : 1405812

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF51754.1\|1400824_1401574_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.6e-61	49.4
AZF51755.1\|1401573_1402251_+	Protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.1e-43	53.1
AZF51756.1\|1402460_1403297_+	Murein hydrolase activator NlpD	A0A0S2SXL7	Bacillus_phage	8.2e-06	33.3
AZF51757.1\|1403402_1404410_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.3e-34	36.2
AZF51758.1\|1404648_1404858_-	Cold shock protein of CSP family	Q9AZD3	Lactococcus_phage	2.2e-16	66.7
AZF51759.1\|1405245_1405812_+	Deoxycytidine triphosphate deaminase	S5VM63	Pseudomonas_phage	6.2e-74	73.3

DBSCAN-SWA_3

3216520 : 3256073

uncultured_Caudovirales_phage(78.79%)

portal,integrase,tail,protease,terminase,plate

attL 3227920:3227934|attR 3257792:3257806

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF53441.1\|3216520_3216733_+	hypothetical protein	A0A2H4J177	uncultured_Caudovirales_phage	8.7e-21	77.3
AZF53442.1\|3217092_3217212_+	hypothetical protein	NA	NA	NA	NA
AZF53443.1\|3217555_3218566_-	hypothetical protein	NA	NA	NA	NA
AZF53444.1\|3219064_3219859_-	Dam modification methylase	C7BGE1	Burkholderia_phage	4.6e-99	65.4
AZF53445.1\|3220008_3220551_-	hypothetical protein	B5TK84	Pseudomonas_phage	6.4e-44	57.5
AZF53446.1\|3220532_3221096_-	Lytic enzyme	B5TK83	Pseudomonas_phage	3.9e-84	80.6
AZF53447.1\|3221144_3222191_-	Phage protein D	A0A2H4JBF6	uncultured_Caudovirales_phage	1.4e-148	75.9
AZF53448.1\|3222272_3222446_-\|tail	Phage tail protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	1.4e-16	71.4
AZF53449.1\|3222453_3223299_-	Phage protein U	A0A2H4J875	uncultured_Caudovirales_phage	3.3e-111	69.3
AZF53450.1\|3223308_3226422_-	Phage protein	A0A2H4JG00	uncultured_Caudovirales_phage	2.5e-87	36.6
AZF53451.1\|3226572_3227172_-	hypothetical protein	A0A2H4J873	uncultured_Caudovirales_phage	1.3e-16	50.0
AZF53452.1\|3227186_3227690_-\|tail	Phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	1.2e-63	72.5
AZF53453.1\|3227702_3228869_-\|tail	Phage tail sheath monomer	A0A2H4J869	uncultured_Caudovirales_phage	8.1e-169	77.4
3227920:3227934	attL	NA	NA	NA	NA
AZF53454.1\|3228971_3229361_-	phage protein	NA	NA	NA	NA
AZF53455.1\|3229371_3231258_-\|tail	Phage tail fiber protein	A4PE45	Ralstonia_virus	1.3e-67	50.0
AZF53456.1\|3231254_3231944_-\|tail	Phage tail fiber	A0A2H4JDH5	uncultured_Caudovirales_phage	1.3e-68	68.5
AZF53457.1\|3231945_3232827_-\|plate	Baseplate assembly protein J	A0A2H4JFK9	uncultured_Caudovirales_phage	4.0e-104	67.5
AZF53458.1\|3232823_3233042_-\|plate	Phage baseplate assembly protein	A0A2H4JA09	uncultured_Caudovirales_phage	1.9e-18	63.8
AZF53459.1\|3233106_3233226_+	hypothetical protein	NA	NA	NA	NA
AZF53460.1\|3233482_3234049_-\|plate	Baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	2.9e-55	73.2
AZF53461.1\|3234045_3234561_-	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	6.5e-62	66.1
AZF53462.1\|3234560_3235220_-	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	1.5e-79	69.0
AZF53463.1\|3235216_3235537_-	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	2.8e-39	70.5
AZF53464.1\|3235539_3236535_-	Phage protein	A0A2H4J890	uncultured_Caudovirales_phage	1.1e-169	87.9
AZF53465.1\|3236597_3236936_-	hypothetical protein	A0A2H4JF15	uncultured_Caudovirales_phage	2.3e-44	83.5
AZF53466.1\|3236932_3238075_-\|protease	Prophage Clp protease-like protein	A0A2H4JDI2	uncultured_Caudovirales_phage	1.3e-139	69.0
AZF53467.1\|3238071_3239553_-\|portal	phage portal protein, lambda family	A0A2H4JFL5	uncultured_Caudovirales_phage	1.4e-245	85.6
AZF53468.1\|3239552_3239759_-	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	2.0e-22	76.5
AZF53469.1\|3239760_3241761_-\|terminase	terminase, large subunit, putative	A0A2H4J898	uncultured_Caudovirales_phage	0.0e+00	84.1
AZF53470.1\|3241764_3242370_-	hypothetical protein	A0A2H4JG15	uncultured_Caudovirales_phage	3.4e-62	68.8
AZF53471.1\|3242575_3242920_-	Holin	A0A2H4J893	uncultured_Caudovirales_phage	2.2e-45	79.6
AZF53472.1\|3243447_3243813_-	hypothetical protein	NA	NA	NA	NA
AZF53473.1\|3243805_3246022_-	DNA primase, phage associated	A0A2D1GN57	Marinobacter_phage	2.2e-191	47.6
AZF53474.1\|3246231_3246750_-	hypothetical protein	NA	NA	NA	NA
AZF53475.1\|3247078_3247339_-	Regulatory protein Cro of bacteriophage	A0A2H4J0V8	uncultured_Caudovirales_phage	2.2e-10	47.9
AZF53476.1\|3247418_3248156_+	repressor protein c2	A5VW98	Enterobacteria_phage	2.7e-29	38.0
AZF53477.1\|3248169_3248487_+	hypothetical protein	NA	NA	NA	NA
AZF53478.1\|3248500_3251833_+	hypothetical protein	NA	NA	NA	NA
AZF53479.1\|3251929_3252106_+	hypothetical protein	NA	NA	NA	NA
AZF53480.1\|3252102_3252693_+	hypothetical protein	NA	NA	NA	NA
AZF53481.1\|3252702_3252987_+	DNA-binding protein Roi-related protein	NA	NA	NA	NA
AZF53482.1\|3253012_3253150_+	hypothetical protein	NA	NA	NA	NA
AZF53483.1\|3253142_3253460_+	transcriptional regulator, putative	NA	NA	NA	NA
AZF53484.1\|3253515_3253914_+	hypothetical protein	NA	NA	NA	NA
AZF53485.1\|3253910_3254456_+	putative hydrolase, HD superfamily	U5P0T3	Shigella_phage	5.3e-30	47.2
AZF53486.1\|3254448_3254769_+	C-5 cytosine-specific DNA methylase	NA	NA	NA	NA
AZF53487.1\|3254765_3255005_+	Phage protein	A0A2H4JF29	uncultured_Caudovirales_phage	2.9e-25	71.4
AZF53488.1\|3255008_3256073_+\|integrase	Phage-related integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	9.5e-108	56.1
3257792:3257806	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3554935 : 3564958

uncultured_Caudovirales_phage(71.43%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF53766.1\|3554935_3555760_-\|tRNA	tRNA(Cytosine32)-2-thiocytidine synthetase	A0A0U2S5Z2	Escherichia_phage	2.0e-105	71.6
AZF53767.1\|3556055_3556658_+	Inner membrane protein YohC	NA	NA	NA	NA
AZF53768.1\|3556786_3557281_+	Protein SprT	NA	NA	NA	NA
AZF53769.1\|3557321_3558497_-	Alpha-methylacyl-CoA racemase	NA	NA	NA	NA
AZF53770.1\|3558656_3559049_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.6e-55	82.9
AZF53771.1\|3559050_3559401_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	3.8e-37	67.8
AZF53772.1\|3559400_3559679_+\|tRNA	tRNA 5-methylaminomethyl-2-thiouridine synthase TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.3e-24	58.6
AZF53773.1\|3559675_3560011_+\|tRNA	tRNA 2-thiouridine synthesis protein TusE	A0A2H4J8B6	uncultured_Caudovirales_phage	4.4e-43	73.0
AZF53774.1\|3560007_3561009_+	Anthranilate phosphoribosyltransferase like	A0A2H4JBY5	uncultured_Caudovirales_phage	1.7e-167	86.3
AZF53775.1\|3561097_3562093_+	Glutathione S-transferase, omega	NA	NA	NA	NA
AZF53776.1\|3562282_3563677_-	Precorrin-2 oxidase	NA	NA	NA	NA
AZF53777.1\|3563677_3564958_-\|tRNA	Seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.8e-98	53.3

DBSCAN-SWA_5

5520761 : 5532698

Bacillus_phage(33.33%)

bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZF55543.1\|5520761_5521007_-	hypothetical protein	B5TK57	Pseudomonas_phage	1.2e-10	50.7
AZF55544.1\|5521605_5522025_-	hypothetical protein	NA	NA	NA	NA
AZF55545.1\|5522002_5522386_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
AZF55546.1\|5522731_5523019_+	Antitoxin HigA	A0A0M3LPV0	Mannheimia_phage	1.9e-18	50.6
AZF55547.1\|5523324_5523780_-	chemotaxis protein, putative	NA	NA	NA	NA
AZF55548.1\|5523772_5529586_-	Signal transduction histidine kinase CheA	W8CYM9	Bacillus_phage	3.7e-12	35.9
AZF55549.1\|5529604_5529721_-	hypothetical protein	NA	NA	NA	NA
AZF55550.1\|5529747_5531799_-	Methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.2e-18	40.5
AZF55551.1\|5531795_5532320_-	type IV pili signal transduction protein PilI	Q56AR1	Bacillus_thuringiensis_phage	2.6e-05	35.6
AZF55552.1\|5532332_5532698_-	twitching motility protein PilH	W8CYM9	Bacillus_phage	4.4e-12	34.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027760

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection